Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Mon Nov 9 12:00:15 2015 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-blas-lapack-dir=/opt/intel/mkl/ --with-mpi-dir=/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc --with-openmp=1 --with-hdf5-dir=/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/ --with-cgns-dir=/gpfs/rrcfd/rruk-students/apps/CGNS/ --with-cmake-dir=/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/ Working directory: /gpfs/rrcfd/rruk-students/apps/petsc Machine platform: ('Linux', 'login02', '2.6.32-358.el6.x86_64', '#1 SMP Tue Jan 29 11:47:41 EST 2013', 'x86_64', 'x86_64') Python version: 2.6.6 (r266:84292, Oct 12 2012, 14:23:48) [GCC 4.4.6 20120305 (Red Hat 4.4.6-4)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/framework.py:833) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:833) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gdb...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/gdb...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/gdb...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/gdb...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/gdb...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/gdb...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gdb...not found Checking for program /usr/lib64/qt-3.3/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/dbx...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/dbx...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/dbx...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/dbx...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/dbx...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/dbx...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/dbx...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/dbx...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/dbx...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/dbx...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/dbx...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/dbx...not found Checking for program /usr/lib64/qt-3.3/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /opt/ibutils/bin/dbx...not found Checking for program /usr/local/sbin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/dbx...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/dbx...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/xdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/xdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/xdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/xdb...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/xdb...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/xdb...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/xdb...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/xdb...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/xdb...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/xdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/xdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/xdb...not found Checking for program /usr/lib64/qt-3.3/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /opt/ibutils/bin/xdb...not found Checking for program /usr/local/sbin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/xdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/xdb...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/dsymutil...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/dsymutil...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/dsymutil...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/dsymutil...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/dsymutil...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/dsymutil...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/dsymutil...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/dsymutil...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/dsymutil...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/dsymutil...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/dsymutil...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/dsymutil...not found Checking for program /usr/lib64/qt-3.3/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /opt/ibutils/bin/dsymutil...not found Checking for program /usr/local/sbin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/dsymutil...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/git...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/git...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/git...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/git...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/git...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/git...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/git...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/git...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/git...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/git...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/git...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/git...not found Checking for program /usr/lib64/qt-3.3/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.7.1 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 6 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/gpfs/rrcfd/rruk-students/apps/petsc" ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) bin/maint exists. This appears to be a repository clone .git directory exists Executing: cd /gpfs/rrcfd/rruk-students/apps/petsc && git describe stdout: v3.6.2-1596-g20ebc73 Executing: cd /gpfs/rrcfd/rruk-students/apps/petsc && git log -1 --pretty=format:%H stdout: 20ebc73b5a65a6aa3c4dffdda7797c91c450b24c Executing: cd /gpfs/rrcfd/rruk-students/apps/petsc && git log -1 --pretty=format:%ci stdout: 2015-11-08 17:25:16 -0600 Executing: cd /gpfs/rrcfd/rruk-students/apps/petsc && git branch stdout: * master Defined "VERSION_GIT" to ""v3.6.2-1596-g20ebc73"" Defined "VERSION_DATE_GIT" to ""2015-11-08 17:25:16 -0600"" Defined "VERSION_BRANCH_GIT" to ""master"" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureArchitecture from PETSc.options.arch(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/arch.py:25) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-linux2-c-debug"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/installDir.py:74) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:74) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/installDir.py:67) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:67) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/installDir.py:51) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:51) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/installDir.py:87) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:87) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1572) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1572) **** printenv **** SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass INCLUDE=/opt/intel/composer_xe_2015.0.090/mkl/include:/opt/intel/composer_xe_2015.0.090/mkl/include:/opt/intel/composer_xe_2015.0.090/mkl/include LOADEDMODULES=gcc/gcc-4.9.2:openmpi/openmpi-1.8.6-gcc:mkl:cuda/cuda7.5:sge62u5 KDE_IS_PRELINKED=1 INTEL_LICENSE_FILE=28518@license-server:28518@b02 KDE_SESSION_VERSION=4 LESSOPEN=|/usr/bin/lesspipe.sh %s SGE_EXECD_PORT=6445 SGE_CLUSTER_NAME=CFMS SGE_CELL=default CPATH=/opt/intel/composer_xe_2015.0.090/mkl/include:/opt/intel/composer_xe_2015.0.090/mkl/include:/opt/intel/composer_xe_2015.0.090/mkl/include LD_LIBRARY_PATH=/gpfs/apps/cuda/cuda-7.5/lib64:/gpfs/apps/cuda/cuda-7.5/lib:/opt/intel/mkl/lib/intel64:/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64:/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/magma-1.6.2/lib:/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib: USER=mleoni XCURSOR_THEME=default PATH=/gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux:/gpfs/rrcfd/rruk-students/home/mleoni/.scripts:/gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux:/gpfs/rrcfd/rruk-students/home/mleoni/.scripts:/gpfs/apps/CD-adapco/STAR-View+9.04.011:/gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin:/gpfs/apps/sge62u5/bin/lx-amd64:/gpfs/apps/cuda/cuda-7.5/bin:/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin:/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin:/gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux:/gpfs/rrcfd/rruk-students/home/mleoni/.scripts:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/opt/ibutils/bin:/usr/local/sbin:/usr/sbin:/sbin:/gpfs/rrcfd/rruk-students/home/mleoni/bin QTDIR=/usr/lib64/qt-3.3 PS1=\[\e[1;31m\]\u@\h\[\033[00m\]:\[\e[0;36m\] \@ \w \[\033[00m\]\$ MIC_LD_LIBRARY_PATH=/opt/intel/mic/coi/device-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/composer_xe_2015.0.090/compiler/lib/mic:/opt/intel/composer_xe_2015.0.090/mkl/lib/mic:/opt/intel/mic/coi/device-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/composer_xe_2015.0.090/compiler/lib/mic:/opt/intel/composer_xe_2015.0.090/mkl/lib/mic:/opt/intel/mic/coi/device-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/composer_xe_2015.0.090/compiler/lib/mic:/opt/intel/composer_xe_2015.0.090/mkl/lib/mic SSH_AGENT_PID=10308 LANG=en_US.UTF-8 QTLIB=/usr/lib64/qt-3.3/lib TERM=xterm SHELL=/bin/bash LM_LICENSE_FILE=6915@172.20.3.18 LIBRARY_PATH=/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 LANGUAGE= SESSION_MANAGER=local/unix:@/tmp/.ICE-unix/10408,unix/unix:/tmp/.ICE-unix/10408 QTINC=/usr/lib64/qt-3.3/include G_BROKEN_FILENAMES=1 PWD=/gpfs/rrcfd/rruk-students/apps/petsc HISTSIZE=1000 WINDOWID=7108586 PETSC_DIR=/gpfs/rrcfd/rruk-students/apps/petsc EDITOR=vim MANPATH=/opt/intel/composer_xe_2015.0.090/man/en_US:/opt/intel/composer_xe_2015.0.090/man/en_US:/gpfs/apps/sge62u5/man:/gpfs/apps/cuda/cuda-7.5/man:/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/share/man:/gpfs/apps6/compilers/gcc/gcc-4.9.2/share/man:/opt/intel/composer_xe_2015.0.090/man/en_US:/gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/man:/usr/local/share/man:/usr/share/man/overrides:/usr/share/man/en:/usr/share/man QT_PLUGIN_PATH=/gpfs/rrcfd/rruk-students/home/mleoni/.kde/lib64/kde4/plugins/:/usr/lib64/kde4/plugins/ SGE_QMASTER_PORT=6444 RR_LD_LICENSE_FILE=6915@172.20.5.42:/rr/licensing/sc03 GPG_AGENT_INFO=/tmp/gpg-jU1uxI/S.gpg-agent:10383:1 HOME=/gpfs/rrcfd/rruk-students/home/mleoni KONSOLE_DBUS_SESSION=/Sessions/170 SGE_ROOT=/gpfs/apps/sge62u5 KDE_SESSION_UID=10653 NXSESSIONID=login02-1001-E1A4815B3BC737C414AE62621FB8801B PROFILEHOME=/gpfs/rrcfd/rruk-students/home/mleoni/LESold SLEPC_DIR=/gpfs/rrcfd/rruk-students/apps/slepc SSH_AUTH_SOCK=/tmp/ssh-dWiQi10306/agent.10306 KONSOLE_DBUS_SERVICE=:1.41 CLICKS_SERVER=172.20.3.18:8343 MPI_HOME=/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc LOGNAME=mleoni SHADOW_XAUTHORITY=/gpfs/rrcfd/rruk-students/home/mleoni/.nx/C-login02-1001-E1A4815B3BC737C414AE62621FB8801B/authority KRB5CCNAME=FILE:/tmp/krb5cc_10653_GtxkFA GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/gpfs/rrcfd/rruk-students/home/mleoni/.gtkrc-2.0::/gpfs/rrcfd/rruk-students/home/mleoni/.kde/share/config/gtkrc-2.0 MAIL=/var/spool/mail/mleoni COLORFGBG=15;0 SSH_CONNECTION=127.0.0.1 38673 127.0.0.1 22 NLSPATH=/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/locale/%l_%t/%N GS_LIB= DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-Hn1hLqLJ3h,guid=820e201a7954d1de8de7d23900f8274b ORBIT_SOCKETDIR=/tmp/orbit-mleoni MODULEPATH=/gpfs/apps6/Modules/modulefiles:/etc/modulefiles KDEDIRS=/usr SLAVE_PID=9669 _LMFILES_=/gpfs/apps6/Modules/modulefiles/gcc/gcc-4.9.2:/gpfs/apps6/Modules/modulefiles/openmpi/openmpi-1.8.6-gcc:/gpfs/apps6/Modules/modulefiles/mkl:/gpfs/apps6/Modules/modulefiles/cuda/cuda7.5:/gpfs/apps6/Modules/modulefiles/sge62u5 DISPLAY=:1001 MKLROOT=/opt/intel/composer_xe_2015.0.090/mkl OLDPWD=/gpfs/rrcfd/rruk-students/home/mleoni/RRI/optimiser/postprocessor/build HOSTNAME=login02 SSH_CLIENT=127.0.0.1 38673 22 MODULESHOME=/usr/share/Modules HISTCONTROL=ignoredups SHLVL=5 PETSC_ARCH=arch-linux2-c-debug CVS_RSH=ssh GTK_RC_FILES=/etc/gtk/gtkrc:/gpfs/rrcfd/rruk-students/home/mleoni/.gtkrc::/gpfs/rrcfd/rruk-students/home/mleoni/.kde/share/config/gtkrc KDE_FULL_SESSION=true XDG_MENU_PREFIX=kde4- LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36: _=./configure XDG_DATA_DIRS=/usr/share/kde-settings/kde-profile/default/share:/usr/local/share:/usr/share BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*` } KDE_MULTIHEAD=false ================================================================================ TEST resetEnvCompilers from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1579) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1579) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1609) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1609) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1544) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1544) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1563) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1563) OpenMPI wrappers require LD_LIBRARY_PATH set Adding to LD_LIBRARY_PATH /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib ================================================================================ TEST checkVendor from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:402) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:402) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:412) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:412) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:538) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:538) Locate a functional C compiler Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc...found Defined make macro "CC" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc" Pushing language C All intermediate test results are stored in /tmp/petsc-6utHXg All intermediate test results are stored in /tmp/petsc-6utHXg/config.setCompilers Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o Testing executable /tmp/petsc-6utHXg/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:571) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:571) Locate a functional C preprocessor Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc...found Defined make macro "CPP" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E" Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.setCompilers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:612) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:612) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:652) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:652) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:764) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:764) Locate a functional Cxx compiler Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx...found Defined make macro "CXX" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx" Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o Testing executable /tmp/petsc-6utHXg/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:802) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:802) Locate a functional Cxx preprocessor Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx...found Defined make macro "CXXCPP" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -E" Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -E -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-6utHXg/config.setCompilers/conftest.cc" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-6utHXg/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-6utHXg/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-6utHXg/config.setCompilers/conftest.cc" 2 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 1 3 # 39 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 3 # 40 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 3 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/c++config.h" 1 3 # 186 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 430 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/c++config.h" 3 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/os_defines.h" 1 3 # 39 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 40 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/os_defines.h" 2 3 # 431 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/c++config.h" 2 3 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/cpu_defines.h" 1 3 # 434 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/c++config.h" 2 3 # 42 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 2 3 # 72 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 33 "/usr/include/stdlib.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 236 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 # 55 "/usr/include/sys/select.h" 3 4 typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 extern "C" { # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw (); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw (); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw (); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 263 "/usr/include/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 } # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 674 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 694 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 } # 73 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 2 3 # 114 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } } # 196 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 228 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-6utHXg/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:919) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:919) Locate a functional Fortran compiler Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90...found Defined make macro "FC" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90" Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o Testing executable /tmp/petsc-6utHXg/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:940) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:940) Make sure fortran comment "!" works Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1053) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1053) ================================================================================ TEST checkArchiver from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1152) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1152) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ar...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/ar...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/ar...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/ar...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/ar...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/ar...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ranlib...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/ranlib...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/ranlib...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/ranlib...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/ranlib...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/ranlib...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-6utHXg/config.setCompilers/libconf1.a /tmp/petsc-6utHXg/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-6utHXg/config.setCompilers/libconf1.a Possible ERROR while running ranlib: exit code 256 stderr: /usr/bin/ranlib: '-c': No such file Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ar...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/ar...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/ar...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/ar...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/ar...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/ar...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ranlib...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/ranlib...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/ranlib...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/ranlib...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/ranlib...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/ranlib...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-6utHXg/config.setCompilers/libconf1.a /tmp/petsc-6utHXg/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-6utHXg/config.setCompilers/libconf1.a Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest /tmp/petsc-6utHXg/config.setCompilers/conftest.o -L/tmp/petsc-6utHXg/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1263) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1263) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc using flags ['-shared'] Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc...found Defined make macro "LD_SHARED" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc" Trying C compiler flag Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -shared /tmp/petsc-6utHXg/config.setCompilers/conftest.o Valid C linker flag -shared Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared /tmp/petsc-6utHXg/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /tmp/petsc-6utHXg/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o: could not read symbols: Bad value collect2: error: ld returned 1 exit status Rejected C compiler flag because it was not compatible with shared linker /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc using flags ['-shared'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Valid C linker flag -shared Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o -L/tmp/petsc-6utHXg/config.setCompilers -lconftest Using shared linker /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1014) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1014) Determine the PIC option for each compiler Pushing language C Trying C compiler flag Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void foo(void); void bar(void){foo();} Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Accepted C compiler flag Popping language C Pushing language Cxx Trying Cxx compiler flag Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" void foo(void); void bar(void){foo();} Pushing language C Pushing language C Popping language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /tmp/petsc-6utHXg/config.setCompilers/conftest.o: relocation R_X86_64_PC32 against undefined symbol `_Z3foov' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Bad value collect2: error: ld returned 1 exit status Rejected Cxx compiler flag because shared linker cannot handle it Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" void foo(void); void bar(void){foo();} Pushing language C Pushing language C Popping language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Trying FC compiler flag Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: function foo(a) real:: a, bar foo = bar(a) end Pushing language C Pushing language C Popping language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /tmp/petsc-6utHXg/config.setCompilers/conftest.o: relocation R_X86_64_PC32 against undefined symbol `bar_' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Bad value collect2: error: ld returned 1 exit status Rejected FC compiler flag because shared linker cannot handle it Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -fPIC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: function foo(a) real:: a, bar foo = bar(a) end Pushing language C Pushing language C Popping language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1352) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1352) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/petsc -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.setCompilers/conftest -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/petsc /tmp/petsc-6utHXg/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/petsc Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/petsc -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/petsc Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1387) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1387) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1436) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1436) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-6utHXg/config.headers Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-6utHXg/config.libraries Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.libraries -fPIC /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC /tmp/petsc-6utHXg/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc using flags ['-shared'] Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’ printf("Could not load symbol\n"); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’ printf("Invalid return from foo()\n"); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’ printf("Could not close library\n"); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-6utHXg/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.o -ldl Using dynamic linker /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/setCompilers.py:1488) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1488) Output module data as defines and substitutions Substituting "CC" with "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc" Substituting "CFLAGS" with " -fPIC " Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" Executing: uname -s stdout: Linux ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined make macro "PETSC_INDEX_SIZE" to "32" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "MPICC_SHOW" to "/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi" Trying C compiler flag -Wall Trying C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Defined make macro "MPICC_SHOW" to "/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi" Trying C compiler flag -g3 Defined make macro "MPICXX_SHOW" to "/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_cxx -lmpi" Trying Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Defined make macro "MPICXX_SHOW" to "/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_cxx -lmpi" Trying Cxx compiler flag -g Defined make macro "MPIFC_SHOW" to "gfortran -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" Trying FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable Trying FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Defined make macro "MPIFC_SHOW" to "gfortran -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" Trying FC compiler flag -g Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Popping language C Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -Wall -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Popping language Cxx Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wall Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -g Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc --version stdout: gcc (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc gcc (GCC) 4.9.2 Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -show stdout: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi Executing: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -show stdout: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx --version stdout: g++ (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx g++ (GCC) 4.9.2 Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -show stdout: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_cxx -lmpi Executing: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -show stdout: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_cxx -lmpi Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 GNU Fortran (GCC) 4.9.2 Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -show stdout: gfortran -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Executing: gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gfortran --version stdout: GNU Fortran (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -show stdout: gfortran -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi ================================================================================ TEST configureDebugging from PETSc.options.debugging(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST checkRestrict from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -V Pushing language C All intermediate test results are stored in /tmp/petsc-6utHXg/config.compilers Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ float * restrict x;; ^ /tmp/petsc-6utHXg/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function) /tmp/petsc-6utHXg/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.compilers/conftest.c:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:318) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:318) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:329) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:329) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:168) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:168) Determines the libraries needed to link with C Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.9.2/configure --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 --enable-languages=c,c++,fortran Thread model: posix gcc version 4.9.2 (GCC) COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-6utHXg/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-g3' '-I' '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include' '-pthread' '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-mtune=generic' '-march=x86-64' /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-6utHXg/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../.. /tmp/petsc-6utHXg/config.compilers/conftest.o -ldl -rpath /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib --enable-new-dtags -lmpi -lgcc --as-needed -lgcc_s --no-as-needed -lpthread -lc -lgcc --as-needed -lgcc_s --no-as-needed /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o /usr/lib/../lib64/crtn.o Popping language C compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc compilers: Unknown arg COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-unknown-linux-gnu compilers: Unknown arg x86_64-unknown-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../gcc-4.9.2/configure compilers: Unknown arg ../gcc-4.9.2/configure compilers: Checking arg --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 compilers: Unknown arg --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 compilers: Checking arg --enable-languages=c,c++,fortran compilers: Unknown arg --enable-languages=c,c++,fortran compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.9.2 compilers: Unknown arg 4.9.2 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-6utHXg/config.compilers/conftest compilers: Unknown arg /tmp/petsc-6utHXg/config.compilers/conftest compilers: Checking arg /usr/lib/../lib64/crt1.o compilers: Unknown arg /usr/lib/../lib64/crt1.o compilers: Checking arg /usr/lib/../lib64/crti.o compilers: Unknown arg /usr/lib/../lib64/crti.o compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o compilers: Checking arg -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Found library directory: -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64 compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../.. compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Checking arg /tmp/petsc-6utHXg/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-6utHXg/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Found library : -lmpi compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lpthread compilers: Found library : -lpthread compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o compilers: Checking arg /usr/lib/../lib64/crtn.o compilers: Unknown arg /usr/lib/../lib64/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-ldl', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-lmpi', '-lgcc_s', '-lpthread'] compilers: Check that C libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1360) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1360) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -MMD -MP /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -MMD -MP /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -MMD -MP /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Popping language FC ================================================================================ TEST checkC99Flag from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1406) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1406) Check for -std=c99 or equivalent flag Accepted C99 compile flag: -std=c99 Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.setCompilers/conftest.c:10:5: error: ‘for’ loop initial declarations are only allowed in C99 or C11 mode for (int i=0; i<2; i++){ ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.c:10:5: note: use option -std=c99, -std=gnu99, -std=c11 or -std=gnu11 to compile your code /tmp/petsc-6utHXg/config.setCompilers/conftest.c:6:9: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] int x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { int x[2],y; y = 5; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-6utHXg/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.setCompilers/conftest.c:10:5: error: ‘for’ loop initial declarations are only allowed in C99 or C11 mode for (int i=0; i<2; i++){ ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.c:10:5: note: use option -std=c99, -std=gnu99, -std=c11 or -std=gnu11 to compile your code /tmp/petsc-6utHXg/config.setCompilers/conftest.c:6:9: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] int x[2],y; ^ PETSc Error: No output file produced Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -std=c99 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.setCompilers/conftest.c:6:9: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] int x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { int x[2],y; y = 5; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Popping language C ================================================================================ TEST checkRestrict from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -V Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-6utHXg/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’ float * restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-6utHXg/config.compilers/conftest.cc:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:369) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:369) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:342) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:342) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:427) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:427) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.compilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.9.2/configure --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 --enable-languages=c,c++,fortran Thread model: posix gcc version 4.9.2 (GCC) COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-6utHXg/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-g' '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib' '-I' '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include' '-pthread' '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-6utHXg/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../.. /tmp/petsc-6utHXg/config.compilers/conftest.o -rpath /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -rpath /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -rpath /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -rpath /opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -rpath /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -rpath /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -rpath /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib --enable-new-dtags -lmpi_cxx -lmpi -lstdc++ -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o /usr/lib/../lib64/crtn.o Popping language Cxx compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ compilers: Unknown arg COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-unknown-linux-gnu compilers: Unknown arg x86_64-unknown-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../gcc-4.9.2/configure compilers: Unknown arg ../gcc-4.9.2/configure compilers: Checking arg --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 compilers: Unknown arg --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 compilers: Checking arg --enable-languages=c,c++,fortran compilers: Unknown arg --enable-languages=c,c++,fortran compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.9.2 compilers: Unknown arg 4.9.2 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-6utHXg/config.compilers/conftest compilers: Unknown arg /tmp/petsc-6utHXg/config.compilers/conftest compilers: Checking arg /usr/lib/../lib64/crt1.o compilers: Unknown arg /usr/lib/../lib64/crt1.o compilers: Checking arg /usr/lib/../lib64/crti.o compilers: Unknown arg /usr/lib/../lib64/crti.o compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o compilers: Checking arg -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Found library directory: -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Checking arg -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../.. compilers: Checking arg /tmp/petsc-6utHXg/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-6utHXg/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Checking arg -rpath compilers: Found -rpath library: /opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -rpath compilers: Found -rpath library: /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi_cxx compilers: Found library: -lmpi_cxx compilers: Checking arg -lmpi compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lpthread compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o compilers: Checking arg /usr/lib/../lib64/crtn.o compilers: Unknown arg /usr/lib/../lib64/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_cxx', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:384) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:384) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/random:35:0, from /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:4: /gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-6utHXg/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/random:35:0, from /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:4: /gpfs/apps6/compilers/gcc/gcc-4.9.2/include/c++/4.9.2/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-6utHXg/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-6utHXg/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:590) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:590) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:649) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:649) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o /tmp/petsc-6utHXg/config.compilers/confc.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:686) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:686) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o /tmp/petsc-6utHXg/config.compilers/confc.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.compilers/conftest.o: In function `MAIN__': conftest.F:(.text+0xa): undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:696) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:696) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:720) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:720) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -DTesting /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC ================================================================================ TEST checkFortranLibraries from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:740) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:740) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -V Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: stderr: Driving: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gfortran -o /tmp/petsc-6utHXg/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gfortran COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.9.2/configure --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 --enable-languages=c,c++,fortran Thread model: posix gcc version 4.9.2 (GCC) Reading specs from /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-6utHXg/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib' '-I' '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include' '-pthread' '-I' '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-6utHXg/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64' '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64' '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib' '-I' '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include' '-pthread' '-I' '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-6utHXg/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../.. /tmp/petsc-6utHXg/config.compilers/conftest.o -rpath /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -rpath /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -rpath /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -rpath /opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -rpath /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -rpath /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -rpath /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -rpath /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib --enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o /usr/lib/../lib64/crtn.o Popping language FC compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gfortran compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-6utHXg/config.compilers/conftest compilers: Unknown arg /tmp/petsc-6utHXg/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -Wno-unused-variable compilers: Unknown arg -Wno-unused-variable compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /tmp/petsc-6utHXg/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-6utHXg/config.compilers/conftest.o compilers: Checking arg -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Unknown arg -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Found library directory: -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Unknown arg -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Unknown arg -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Checking arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Unknown arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Found library directory: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Unknown arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Unknown arg -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Unknown arg -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Found library directory: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Unknown arg -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include compilers: Found include directory: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include compilers: Checking arg -pthread compilers: Unknown arg -pthread compilers: Checking arg -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Found include directory: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -Wl,-rpath compilers: Unknown arg -Wl,-rpath compilers: Checking arg -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Unknown arg -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Already in lflags so skipping: -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -lmpi_usempif08 compilers: Found library: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Found library: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Found library: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gfortran compilers: Unknown arg COLLECT_GCC=/gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-unknown-linux-gnu compilers: Unknown arg x86_64-unknown-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../gcc-4.9.2/configure compilers: Unknown arg ../gcc-4.9.2/configure compilers: Checking arg --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 compilers: Unknown arg --prefix=/gpfs/apps6/compilers/gcc/gcc-4.9.2 compilers: Checking arg --enable-languages=c,c++,fortran compilers: Unknown arg --enable-languages=c,c++,fortran compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.9.2 compilers: Unknown arg 4.9.2 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/libgfortran.spec compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64/:/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/:/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-6utHXg/config.compilers/conftest compilers: Unknown arg /tmp/petsc-6utHXg/config.compilers/conftest compilers: Checking arg /usr/lib/../lib64/crt1.o compilers: Unknown arg /usr/lib/../lib64/crt1.o compilers: Checking arg /usr/lib/../lib64/crti.o compilers: Unknown arg /usr/lib/../lib64/crti.o compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o compilers: Checking arg -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Already in lflags so skipping: -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Already in lflags so skipping: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Already in lflags so skipping: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Already in lflags so skipping: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Checking arg -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Already in lflags so skipping: -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Already in lflags so skipping: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64 compilers: Already in lflags so skipping: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../.. compilers: Already in lflags so skipping: -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Checking arg /tmp/petsc-6utHXg/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-6utHXg/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 compilers: Checking arg -rpath compilers: Found -rpath library: /opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 compilers: Checking arg -rpath compilers: Found -rpath library: /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Found -rpath library: /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi_usempif08 compilers: Already in lflags: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Already in lflags: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Already in lflags: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o compilers: Unknown arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o compilers: Checking arg /usr/lib/../lib64/crtn.o compilers: Unknown arg /usr/lib/../lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX compilers: Fortran libraries can be used from C++ Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Executing: /tmp/petsc-6utHXg/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1094) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1094) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o /tmp/petsc-6utHXg/config.compilers/cxxobj.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread /tmp/petsc-6utHXg/config.compilers/confc.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1129) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1129) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1142) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1142) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1162) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1162) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o /tmp/petsc-6utHXg/config.compilers/fooobj.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.compilers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.compilers/conftest Executing: /tmp/petsc-6utHXg/config.compilers/conftest stdout: arrays [0x7fff45869e70 0x7fff45869e70 0x7fff45869e70] arrays [0x7fff45869e20 0x7fff45869dd0 0x7fff45869e20] pointers do not match! [0xffffffff 0x7fff45869e70] [(nil)] ERROR while running executable: Could not execute "/tmp/petsc-6utHXg/config.compilers/conftest": arrays [0x7fff45869e70 0x7fff45869e70 0x7fff45869e70] arrays [0x7fff45869e20 0x7fff45869dd0 0x7fff45869e20] pointers do not match! [0xffffffff 0x7fff45869e70] [(nil)] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1249) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1249) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.compilers/conftest -I/tmp/petsc-6utHXg/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.o /tmp/petsc-6utHXg/config.compilers/configtest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1315) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1315) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -module /tmp/petsc-6utHXg/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-module’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -module:/tmp/petsc-6utHXg/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-6utHXg/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -fmod=/tmp/petsc-6utHXg/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-fmod=/tmp/petsc-6utHXg/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.compilers/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -J/tmp/petsc-6utHXg/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/compilers.py:1473) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1473) ================================================================================ TEST configureClosure from config.utilities.closure(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /tmp/petsc-6utHXg/config.utilities.closure Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.closure/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.utilities.closure/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.utilities.closure/conftest.c:6:6: error: expected identifier or ‘(’ before ‘^’ token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.options.fortranCPP(config/PETSc/options/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.headers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Source: #include "confdefs.h" #include "conffix.h" #include Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.headers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.headers/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.headers/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.headers/conftest Executing: /tmp/petsc-6utHXg/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 5 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/stat.h" 1 3 4 # 39 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 40 "/usr/include/sys/stat.h" 2 3 4 # 105 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/bits/stat.h" 1 3 4 # 46 "/usr/include/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 4 long int __unused[3]; # 115 "/usr/include/bits/stat.h" 3 4 }; # 108 "/usr/include/sys/stat.h" 2 3 4 # 211 "/usr/include/sys/stat.h" 3 4 extern int stat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 240 "/usr/include/sys/stat.h" 3 4 extern int fstatat (int __fd, __const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 265 "/usr/include/sys/stat.h" 3 4 extern int lstat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 286 "/usr/include/sys/stat.h" 3 4 extern int chmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__)); extern int fchmodat (int __fd, __const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__)); # 323 "/usr/include/sys/stat.h" 3 4 extern int mkdir (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, __const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, __const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, __const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, __const char *__path, __const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, __const struct timespec __times[2]) __attribute__ ((__nothrow__)); # 401 "/usr/include/sys/stat.h" 3 4 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, __const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))); # 444 "/usr/include/sys/stat.h" 3 4 extern int __xmknod (int __ver, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 5))); # 536 "/usr/include/sys/stat.h" 3 4 # 6 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.headers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 417 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 23 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 28 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 32 "/usr/include/sys/time.h" 2 3 4 # 57 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)); # 191 "/usr/include/sys/time.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.headers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 28 "/usr/include/math.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/huge_val.h" 1 3 4 # 35 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/huge_valf.h" 1 3 4 # 37 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/huge_vall.h" 1 3 4 # 38 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/inf.h" 1 3 4 # 41 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/nan.h" 1 3 4 # 44 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/mathdef.h" 1 3 4 # 26 "/usr/include/bits/mathdef.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/bits/mathdef.h" 2 3 4 typedef float float_t; typedef double double_t; # 48 "/usr/include/math.h" 2 3 4 # 71 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/bits/mathcalls.h" 3 4 extern double acos (double __x) __attribute__ ((__nothrow__)); extern double __acos (double __x) __attribute__ ((__nothrow__)); extern double asin (double __x) __attribute__ ((__nothrow__)); extern double __asin (double __x) __attribute__ ((__nothrow__)); extern double atan (double __x) __attribute__ ((__nothrow__)); extern double __atan (double __x) __attribute__ ((__nothrow__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double cos (double __x) __attribute__ ((__nothrow__)); extern double __cos (double __x) __attribute__ ((__nothrow__)); extern double sin (double __x) __attribute__ ((__nothrow__)); extern double __sin (double __x) __attribute__ ((__nothrow__)); extern double tan (double __x) __attribute__ ((__nothrow__)); extern double __tan (double __x) __attribute__ ((__nothrow__)); extern double cosh (double __x) __attribute__ ((__nothrow__)); extern double __cosh (double __x) __attribute__ ((__nothrow__)); extern double sinh (double __x) __attribute__ ((__nothrow__)); extern double __sinh (double __x) __attribute__ ((__nothrow__)); extern double tanh (double __x) __attribute__ ((__nothrow__)); extern double __tanh (double __x) __attribute__ ((__nothrow__)); # 87 "/usr/include/bits/mathcalls.h" 3 4 extern double acosh (double __x) __attribute__ ((__nothrow__)); extern double __acosh (double __x) __attribute__ ((__nothrow__)); extern double asinh (double __x) __attribute__ ((__nothrow__)); extern double __asinh (double __x) __attribute__ ((__nothrow__)); extern double atanh (double __x) __attribute__ ((__nothrow__)); extern double __atanh (double __x) __attribute__ ((__nothrow__)); extern double exp (double __x) __attribute__ ((__nothrow__)); extern double __exp (double __x) __attribute__ ((__nothrow__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double log (double __x) __attribute__ ((__nothrow__)); extern double __log (double __x) __attribute__ ((__nothrow__)); extern double log10 (double __x) __attribute__ ((__nothrow__)); extern double __log10 (double __x) __attribute__ ((__nothrow__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); # 127 "/usr/include/bits/mathcalls.h" 3 4 extern double expm1 (double __x) __attribute__ ((__nothrow__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__)); extern double log1p (double __x) __attribute__ ((__nothrow__)); extern double __log1p (double __x) __attribute__ ((__nothrow__)); extern double logb (double __x) __attribute__ ((__nothrow__)); extern double __logb (double __x) __attribute__ ((__nothrow__)); extern double exp2 (double __x) __attribute__ ((__nothrow__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__)); extern double log2 (double __x) __attribute__ ((__nothrow__)); extern double __log2 (double __x) __attribute__ ((__nothrow__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double sqrt (double __x) __attribute__ ((__nothrow__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double cbrt (double __x) __attribute__ ((__nothrow__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__)); extern double ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern int __isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double significand (double __x) __attribute__ ((__nothrow__)); extern double __significand (double __x) __attribute__ ((__nothrow__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double nan (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nan (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__)); extern double __j0 (double) __attribute__ ((__nothrow__)); extern double j1 (double) __attribute__ ((__nothrow__)); extern double __j1 (double) __attribute__ ((__nothrow__)); extern double jn (int, double) __attribute__ ((__nothrow__)); extern double __jn (int, double) __attribute__ ((__nothrow__)); extern double y0 (double) __attribute__ ((__nothrow__)); extern double __y0 (double) __attribute__ ((__nothrow__)); extern double y1 (double) __attribute__ ((__nothrow__)); extern double __y1 (double) __attribute__ ((__nothrow__)); extern double yn (int, double) __attribute__ ((__nothrow__)); extern double __yn (int, double) __attribute__ ((__nothrow__)); extern double erf (double) __attribute__ ((__nothrow__)); extern double __erf (double) __attribute__ ((__nothrow__)); extern double erfc (double) __attribute__ ((__nothrow__)); extern double __erfc (double) __attribute__ ((__nothrow__)); extern double lgamma (double) __attribute__ ((__nothrow__)); extern double __lgamma (double) __attribute__ ((__nothrow__)); extern double tgamma (double) __attribute__ ((__nothrow__)); extern double __tgamma (double) __attribute__ ((__nothrow__)); extern double gamma (double) __attribute__ ((__nothrow__)); extern double __gamma (double) __attribute__ ((__nothrow__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double rint (double __x) __attribute__ ((__nothrow__)); extern double __rint (double __x) __attribute__ ((__nothrow__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern int ilogb (double __x) __attribute__ ((__nothrow__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__)); extern double round (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrint (double __x) __attribute__ ((__nothrow__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__)); extern long long int llrint (double __x) __attribute__ ((__nothrow__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__)); extern long int lround (double __x) __attribute__ ((__nothrow__)); extern long int __lround (double __x) __attribute__ ((__nothrow__)); extern long long int llround (double __x) __attribute__ ((__nothrow__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__)); extern double scalb (double __x, double __n) __attribute__ ((__nothrow__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__)); # 72 "/usr/include/math.h" 2 3 4 # 94 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/bits/mathcalls.h" 3 4 extern float acosf (float __x) __attribute__ ((__nothrow__)); extern float __acosf (float __x) __attribute__ ((__nothrow__)); extern float asinf (float __x) __attribute__ ((__nothrow__)); extern float __asinf (float __x) __attribute__ ((__nothrow__)); extern float atanf (float __x) __attribute__ ((__nothrow__)); extern float __atanf (float __x) __attribute__ ((__nothrow__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float cosf (float __x) __attribute__ ((__nothrow__)); extern float __cosf (float __x) __attribute__ ((__nothrow__)); extern float sinf (float __x) __attribute__ ((__nothrow__)); extern float __sinf (float __x) __attribute__ ((__nothrow__)); extern float tanf (float __x) __attribute__ ((__nothrow__)); extern float __tanf (float __x) __attribute__ ((__nothrow__)); extern float coshf (float __x) __attribute__ ((__nothrow__)); extern float __coshf (float __x) __attribute__ ((__nothrow__)); extern float sinhf (float __x) __attribute__ ((__nothrow__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__)); extern float tanhf (float __x) __attribute__ ((__nothrow__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__)); # 87 "/usr/include/bits/mathcalls.h" 3 4 extern float acoshf (float __x) __attribute__ ((__nothrow__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__)); extern float asinhf (float __x) __attribute__ ((__nothrow__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__)); extern float atanhf (float __x) __attribute__ ((__nothrow__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__)); extern float expf (float __x) __attribute__ ((__nothrow__)); extern float __expf (float __x) __attribute__ ((__nothrow__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float logf (float __x) __attribute__ ((__nothrow__)); extern float __logf (float __x) __attribute__ ((__nothrow__)); extern float log10f (float __x) __attribute__ ((__nothrow__)); extern float __log10f (float __x) __attribute__ ((__nothrow__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); # 127 "/usr/include/bits/mathcalls.h" 3 4 extern float expm1f (float __x) __attribute__ ((__nothrow__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__)); extern float log1pf (float __x) __attribute__ ((__nothrow__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__)); extern float logbf (float __x) __attribute__ ((__nothrow__)); extern float __logbf (float __x) __attribute__ ((__nothrow__)); extern float exp2f (float __x) __attribute__ ((__nothrow__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__)); extern float log2f (float __x) __attribute__ ((__nothrow__)); extern float __log2f (float __x) __attribute__ ((__nothrow__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__)); extern float ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern int __isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float significandf (float __x) __attribute__ ((__nothrow__)); extern float __significandf (float __x) __attribute__ ((__nothrow__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float nanf (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nanf (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__)); extern float __j0f (float) __attribute__ ((__nothrow__)); extern float j1f (float) __attribute__ ((__nothrow__)); extern float __j1f (float) __attribute__ ((__nothrow__)); extern float jnf (int, float) __attribute__ ((__nothrow__)); extern float __jnf (int, float) __attribute__ ((__nothrow__)); extern float y0f (float) __attribute__ ((__nothrow__)); extern float __y0f (float) __attribute__ ((__nothrow__)); extern float y1f (float) __attribute__ ((__nothrow__)); extern float __y1f (float) __attribute__ ((__nothrow__)); extern float ynf (int, float) __attribute__ ((__nothrow__)); extern float __ynf (int, float) __attribute__ ((__nothrow__)); extern float erff (float) __attribute__ ((__nothrow__)); extern float __erff (float) __attribute__ ((__nothrow__)); extern float erfcf (float) __attribute__ ((__nothrow__)); extern float __erfcf (float) __attribute__ ((__nothrow__)); extern float lgammaf (float) __attribute__ ((__nothrow__)); extern float __lgammaf (float) __attribute__ ((__nothrow__)); extern float tgammaf (float) __attribute__ ((__nothrow__)); extern float __tgammaf (float) __attribute__ ((__nothrow__)); extern float gammaf (float) __attribute__ ((__nothrow__)); extern float __gammaf (float) __attribute__ ((__nothrow__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float rintf (float __x) __attribute__ ((__nothrow__)); extern float __rintf (float __x) __attribute__ ((__nothrow__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__)); extern float roundf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__)); extern long long int llrintf (float __x) __attribute__ ((__nothrow__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__)); extern long long int llroundf (float __x) __attribute__ ((__nothrow__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__)); extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__)); # 95 "/usr/include/math.h" 2 3 4 # 141 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/bits/mathcalls.h" 3 4 extern long double acosl (long double __x) __attribute__ ((__nothrow__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__)); # 87 "/usr/include/bits/mathcalls.h" 3 4 extern long double acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double expl (long double __x) __attribute__ ((__nothrow__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double logl (long double __x) __attribute__ ((__nothrow__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); # 127 "/usr/include/bits/mathcalls.h" 3 4 extern long double expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double nanl (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nanl (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__)); extern long double __j0l (long double) __attribute__ ((__nothrow__)); extern long double j1l (long double) __attribute__ ((__nothrow__)); extern long double __j1l (long double) __attribute__ ((__nothrow__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__)); extern long double y0l (long double) __attribute__ ((__nothrow__)); extern long double __y0l (long double) __attribute__ ((__nothrow__)); extern long double y1l (long double) __attribute__ ((__nothrow__)); extern long double __y1l (long double) __attribute__ ((__nothrow__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__)); extern long double erfl (long double) __attribute__ ((__nothrow__)); extern long double __erfl (long double) __attribute__ ((__nothrow__)); extern long double erfcl (long double) __attribute__ ((__nothrow__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__)); extern long double lgammal (long double) __attribute__ ((__nothrow__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__)); extern long double tgammal (long double) __attribute__ ((__nothrow__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__)); extern long double gammal (long double) __attribute__ ((__nothrow__)); extern long double __gammal (long double) __attribute__ ((__nothrow__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__)); extern long long int llrintl (long double __x) __attribute__ ((__nothrow__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__)); extern long long int llroundl (long double __x) __attribute__ ((__nothrow__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__)); extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); # 142 "/usr/include/math.h" 2 3 4 # 157 "/usr/include/math.h" 3 4 extern int signgam; # 198 "/usr/include/math.h" 3 4 enum { FP_NAN, FP_INFINITE, FP_ZERO, FP_SUBNORMAL, FP_NORMAL }; # 291 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 316 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 472 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATH_H" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.headers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 24 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 24 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 25 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 44 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 4 # 40 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/sys/uio.h" 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 31 "/usr/include/sys/socket.h" 2 3 4 # 40 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 29 "/usr/include/bits/socket.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 30 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 171 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 187 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 274 "/usr/include/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 304 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 331 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 377 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 378 "/usr/include/bits/socket.h" 2 3 4 # 411 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); # 129 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); # 214 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 254 "/usr/include/sys/socket.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 24 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/malloc.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 147 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 26 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 30 "/usr/include/stdio.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 35 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 37 "/usr/include/stdio.h" 2 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 75 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 32 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 83 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 53 "/usr/include/_G_config.h" 3 4 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 33 "/usr/include/libio.h" 2 3 4 # 53 "/usr/include/libio.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdarg.h" 1 3 4 # 40 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 54 "/usr/include/libio.h" 2 3 4 # 170 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 271 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 4 __off64_t _offset; # 328 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 364 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 416 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 460 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__)); # 490 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__)); # 76 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 91 "/usr/include/stdio.h" 3 4 typedef __off_t off_t; # 103 "/usr/include/stdio.h" 3 4 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 161 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 162 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) __attribute__ ((__nothrow__)); extern int rename (__const char *__old, __const char *__new) __attribute__ ((__nothrow__)); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) __attribute__ ((__nothrow__)); extern FILE *tmpfile (void) ; # 208 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__)) ; # 226 "/usr/include/stdio.h" 3 4 extern char *tempnam (__const char *__dir, __const char *__pfx) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 251 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 265 "/usr/include/stdio.h" 3 4 extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 4 # 305 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, __const char *__modes) __attribute__ ((__nothrow__)) ; # 318 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) __attribute__ ((__nothrow__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__)); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 416 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); # 447 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (__const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__)); # 467 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 498 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 526 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 554 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 565 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 598 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; # 660 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; # 732 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 768 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 787 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 4 # 819 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 4 # 27 "/usr/include/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern __const char *__const sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; # 868 "/usr/include/stdio.h" 3 4 extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__)); # 908 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__)); # 938 "/usr/include/stdio.h" 3 4 # 27 "/usr/include/malloc.h" 2 3 4 # 48 "/usr/include/malloc.h" 3 4 extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void * pvalloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__)); # 135 "/usr/include/malloc.h" 3 4 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__)); extern void malloc_stats (void) __attribute__ ((__nothrow__)); extern int malloc_info (int __options, FILE *__fp); extern void *malloc_get_state (void) __attribute__ ((__nothrow__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__)); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void *__ptr, __const void *) ; extern void *(*__malloc_hook) (size_t __size, __const void *) ; extern void *(*__realloc_hook) (void *__ptr, size_t __size, __const void *) ; extern void *(*__memalign_hook) (size_t __alignment, size_t __size, __const void *) ; extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 417 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 28 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/strings.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/strings.h" 2 3 4 extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)); # 74 "/usr/include/strings.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 102 "/usr/include/strings.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((const)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 126 "/usr/include/strings.h" 2 3 4 extern int strcasecmp_l (__const char *__s1, __const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (__const char *__s1, __const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 24 "/usr/include/sched.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 4 # 74 "/usr/include/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) __attribute__ ((__nothrow__)); extern int unshare (int __flags) __attribute__ ((__nothrow__)); extern int sched_getcpu (void) __attribute__ ((__nothrow__)); struct __sched_param { int __sched_priority; }; # 116 "/usr/include/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 199 "/usr/include/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__)); extern int sched_yield (void) __attribute__ ((__nothrow__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__)); # 126 "/usr/include/sched.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 11 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 67 "/usr/include/linux/kernel.h" 3 4 struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 26 "/usr/include/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__)); extern int get_nprocs (void) __attribute__ ((__nothrow__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 27 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 31 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 104 "/usr/include/bits/sigset.h" 3 4 extern int __sigismember (__const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 34 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 58 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/signum.h" 1 3 4 # 59 "/usr/include/signal.h" 2 3 4 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 77 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/siginfo.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 26 "/usr/include/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 51 "/usr/include/bits/siginfo.h" 3 4 typedef struct siginfo { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __clock_t si_utime; __clock_t si_stime; } _sigchld; struct { void *si_addr; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; } _sifields; } siginfo_t; # 129 "/usr/include/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 273 "/usr/include/bits/siginfo.h" 3 4 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); void *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 80 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); # 99 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); # 113 "/usr/include/signal.h" 3 4 # 126 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__)); extern int raise (int __sig) __attribute__ ((__nothrow__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__)); extern void psignal (int __sig, __const char *__s); extern void psiginfo (__const siginfo_t *__pinfo, __const char *__s); # 168 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 196 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); # 216 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (__const sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 252 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigaction.h" 1 3 4 # 25 "/usr/include/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 253 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, __const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__)); extern int sigsuspend (__const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, __const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (__const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (__const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (__const sigset_t *__restrict __set, siginfo_t *__restrict __info, __const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, __const union sigval __val) __attribute__ ((__nothrow__)); # 310 "/usr/include/signal.h" 3 4 extern __const char *__const _sys_siglist[65]; extern __const char *__const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 334 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, __const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__)); # 1 "/usr/include/bits/sigcontext.h" 1 3 4 # 26 "/usr/include/bits/sigcontext.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/bits/sigcontext.h" 2 3 4 struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 109 "/usr/include/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { unsigned long r8; unsigned long r9; unsigned long r10; unsigned long r11; unsigned long r12; unsigned long r13; unsigned long r14; unsigned long r15; unsigned long rdi; unsigned long rsi; unsigned long rbp; unsigned long rbx; unsigned long rdx; unsigned long rax; unsigned long rcx; unsigned long rsp; unsigned long rip; unsigned long eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; unsigned long err; unsigned long trapno; unsigned long oldmask; unsigned long cr2; struct _fpstate * fpstate; unsigned long __reserved1 [8]; }; # 340 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__)); # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 350 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__)); # 1 "/usr/include/bits/sigstack.h" 1 3 4 # 26 "/usr/include/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 50 "/usr/include/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 357 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/sys/ucontext.h" 1 3 4 # 23 "/usr/include/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 24 "/usr/include/sys/ucontext.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 25 "/usr/include/sys/ucontext.h" 2 3 4 # 33 "/usr/include/sys/ucontext.h" 3 4 typedef long int greg_t; typedef greg_t gregset_t[23]; # 94 "/usr/include/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; unsigned long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 360 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int sigaltstack (__const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__)); # 394 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 395 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/sigthread.h" 1 3 4 # 31 "/usr/include/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, __const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__)); # 396 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__)); # 32 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 25 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/bits/resource.h" 1 3 4 # 33 "/usr/include/bits/resource.h" 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_NLIMITS = 15, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 127 "/usr/include/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 154 "/usr/include/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 172 "/usr/include/bits/resource.h" 3 4 }; # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 176 "/usr/include/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 26 "/usr/include/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 70 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 88 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__)); # 33 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 39 "/usr/include/sys/wait.h" 2 3 4 # 63 "/usr/include/sys/wait.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 80 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 81 "/usr/include/sys/wait.h" 2 3 4 # 102 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 116 "/usr/include/sys/wait.h" 3 4 extern __pid_t wait (__WAIT_STATUS __stat_loc); # 139 "/usr/include/sys/wait.h" 3 4 extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); # 1 "/usr/include/bits/siginfo.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 26 "/usr/include/bits/siginfo.h" 2 3 4 # 144 "/usr/include/sys/wait.h" 2 3 4 # 155 "/usr/include/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 23 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 4 # 74 "/usr/include/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) __attribute__ ((__nothrow__)); extern int unshare (int __flags) __attribute__ ((__nothrow__)); extern int sched_getcpu (void) __attribute__ ((__nothrow__)); struct __sched_param { int __sched_priority; }; # 116 "/usr/include/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 199 "/usr/include/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__)); extern int sched_yield (void) __attribute__ ((__nothrow__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__)); # 126 "/usr/include/sched.h" 3 4 # 26 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 30 "/usr/include/time.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 417 "/usr/include/time.h" 3 4 # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/setjmp.h" 1 3 4 # 27 "/usr/include/bits/setjmp.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 31 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; # 115 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 147 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 182 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 220 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 263 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 413 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__)); # 478 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 490 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 524 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 664 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 676 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 717 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 790 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (__const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 872 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 984 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 1028 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 1095 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__)); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) __attribute__ ((__nothrow__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 1129 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__)); # 1143 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 26 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/bits/setjmp.h" 1 3 4 # 27 "/usr/include/bits/setjmp.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 31 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 32 "/usr/include/setjmp.h" 2 3 4 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); # 78 "/usr/include/setjmp.h" 3 4 extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; # 110 "/usr/include/setjmp.h" 3 4 extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 120 "/usr/include/setjmp.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 26 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 31 "/usr/include/sys/utsname.h" 2 3 4 # 49 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 1 3 4 # 34 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/syslimits.h" 1 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 1 3 4 # 168 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/limits.h" 2 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/bits/local_lim.h" 2 3 4 # 158 "/usr/include/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 169 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 2 3 4 # 8 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/syslimits.h" 2 3 4 # 35 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 2 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 27 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/bits/fcntl.h" 1 3 4 # 25 "/usr/include/bits/fcntl.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 26 "/usr/include/bits/fcntl.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/bits/fcntl.h" 2 3 4 # 165 "/usr/include/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 250 "/usr/include/bits/fcntl.h" 3 4 # 295 "/usr/include/bits/fcntl.h" 3 4 # 35 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 41 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/bits/stat.h" 1 3 4 # 46 "/usr/include/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 4 long int __unused[3]; # 115 "/usr/include/bits/stat.h" 3 4 }; # 42 "/usr/include/fcntl.h" 2 3 4 # 122 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 131 "/usr/include/fcntl.h" 3 4 extern int open (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 155 "/usr/include/fcntl.h" 3 4 extern int openat (int __fd, __const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 177 "/usr/include/fcntl.h" 3 4 extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1))); # 206 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len); # 223 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len, int __advise) __attribute__ ((__nothrow__)); # 245 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len); # 267 "/usr/include/fcntl.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 26 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 30 "/usr/include/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 1 3 4 # 9 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/pwd.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/pwd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/pwd.h" 2 3 4 # 73 "/usr/include/pwd.h" 3 4 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); # 95 "/usr/include/pwd.h" 3 4 extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (__const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (__const char *__name); # 140 "/usr/include/pwd.h" 3 4 extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/float.h" 1 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 26 "/usr/include/sys/param.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 1 3 4 # 34 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/syslimits.h" 1 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 1 3 4 # 168 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/limits.h" 2 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/bits/local_lim.h" 2 3 4 # 158 "/usr/include/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 169 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 2 3 4 # 8 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/syslimits.h" 2 3 4 # 35 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 2 3 4 # 27 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/linux/param.h" 1 3 4 # 1 "/usr/include/asm/param.h" 1 3 4 # 1 "/usr/include/asm-generic/param.h" 1 3 4 # 1 "/usr/include/asm/param.h" 2 3 4 # 5 "/usr/include/linux/param.h" 2 3 4 # 29 "/usr/include/sys/param.h" 2 3 4 # 52 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 53 "/usr/include/sys/param.h" 2 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 26 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 24 "/usr/include/netinet/in.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 1 3 4 # 9 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 2 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 26 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 24 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 201 "/usr/include/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 25 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 44 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 4 # 40 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/sys/uio.h" 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 31 "/usr/include/sys/socket.h" 2 3 4 # 40 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 29 "/usr/include/bits/socket.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 30 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 171 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 187 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 274 "/usr/include/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 304 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 331 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 377 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 378 "/usr/include/bits/socket.h" 2 3 4 # 411 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); # 129 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); # 214 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 254 "/usr/include/sys/socket.h" 3 4 # 26 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 198 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 225 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 356 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/bits/in.h" 1 3 4 # 99 "/usr/include/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 357 "/usr/include/netinet/in.h" 2 3 4 # 365 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 377 "/usr/include/netinet/in.h" 2 3 4 # 440 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__)); # 565 "/usr/include/netinet/in.h" 3 4 # 29 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/rpc/netdb.h" 1 3 4 # 42 "/usr/include/rpc/netdb.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 43 "/usr/include/rpc/netdb.h" 2 3 4 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__)); extern void endrpcent (void) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcbyname (__const char *__name) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__)); extern int getrpcbyname_r (__const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); # 34 "/usr/include/netdb.h" 2 3 4 # 43 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/bits/netdb.h" 1 3 4 # 27 "/usr/include/bits/netdb.h" 3 4 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 44 "/usr/include/netdb.h" 2 3 4 # 54 "/usr/include/netdb.h" 3 4 extern int *__h_errno_location (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 93 "/usr/include/netdb.h" 3 4 extern void herror (__const char *__str) __attribute__ ((__nothrow__)); extern __const char *hstrerror (int __err_num) __attribute__ ((__nothrow__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (__const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (__const char *__name); # 156 "/usr/include/netdb.h" 3 4 extern struct hostent *gethostbyname2 (__const char *__name, int __af); # 168 "/usr/include/netdb.h" 3 4 extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (__const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (__const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (__const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); # 199 "/usr/include/netdb.h" 3 4 extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (__const char *__name); # 238 "/usr/include/netdb.h" 3 4 extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (__const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (__const char *__name, __const char *__proto); extern struct servent *getservbyport (int __port, __const char *__proto); # 310 "/usr/include/netdb.h" 3 4 extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (__const char *__restrict __name, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (__const char *__name); extern struct protoent *getprotobynumber (int __proto); # 376 "/usr/include/netdb.h" 3 4 extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (__const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); # 397 "/usr/include/netdb.h" 3 4 extern int setnetgrent (__const char *__netgroup); extern void endnetgrent (void); # 414 "/usr/include/netdb.h" 3 4 extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); # 425 "/usr/include/netdb.h" 3 4 extern int innetgr (__const char *__netgroup, __const char *__host, __const char *__user, __const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); # 453 "/usr/include/netdb.h" 3 4 extern int rcmd (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p); # 465 "/usr/include/netdb.h" 3 4 extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 481 "/usr/include/netdb.h" 3 4 extern int rexec (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p); # 493 "/usr/include/netdb.h" 3 4 extern int rexec_af (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 507 "/usr/include/netdb.h" 3 4 extern int ruserok (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser); # 517 "/usr/include/netdb.h" 3 4 extern int ruserok_af (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); # 530 "/usr/include/netdb.h" 3 4 extern int iruserok (uint32_t __raddr, int __suser, __const char *__remuser, __const char *__locuser); # 541 "/usr/include/netdb.h" 3 4 extern int iruserok_af (__const void *__raddr, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); # 553 "/usr/include/netdb.h" 3 4 extern int rresvport (int *__alport); # 562 "/usr/include/netdb.h" 3 4 extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 664 "/usr/include/netdb.h" 3 4 extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__)); extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__)); extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 715 "/usr/include/netdb.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 23 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/search.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 27 "/usr/include/search.h" 2 3 4 # 45 "/usr/include/search.h" 3 4 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__)); extern void remque (void *__elem) __attribute__ ((__nothrow__)); typedef int (*__compar_fn_t) (__const void *, __const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; # 88 "/usr/include/search.h" 3 4 extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__)); extern void hdestroy (void) __attribute__ ((__nothrow__)); # 119 "/usr/include/search.h" 3 4 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (__const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (__const void *__key, void *__const *__rootp, __compar_fn_t __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 4 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 31 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 32 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 25 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 28 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 32 "/usr/include/sys/time.h" 2 3 4 # 57 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)); # 191 "/usr/include/sys/time.h" 3 4 # 33 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 34 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/user.h" 1 3 4 # 26 "/usr/include/sys/user.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/sys/user.h" 2 3 4 struct user_fpregs_struct { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; __uint32_t st_space[32]; __uint32_t xmm_space[64]; __uint32_t padding[24]; }; struct user_regs_struct { unsigned long r15; unsigned long r14; unsigned long r13; unsigned long r12; unsigned long rbp; unsigned long rbx; unsigned long r11; unsigned long r10; unsigned long r9; unsigned long r8; unsigned long rax; unsigned long rcx; unsigned long rdx; unsigned long rsi; unsigned long rdi; unsigned long orig_rax; unsigned long rip; unsigned long cs; unsigned long eflags; unsigned long rsp; unsigned long ss; unsigned long fs_base; unsigned long gs_base; unsigned long ds; unsigned long es; unsigned long fs; unsigned long gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; unsigned long int u_tsize; unsigned long int u_dsize; unsigned long int u_ssize; unsigned long start_code; unsigned long start_stack; long int signal; int reserved; struct user_regs_struct* u_ar0; struct user_fpregs_struct* u_fpstate; unsigned long int magic; char u_comm [32]; unsigned long int u_debugreg [8]; }; # 35 "/usr/include/sys/procfs.h" 2 3 4 typedef unsigned long elf_greg_t; typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 60 "/usr/include/sys/procfs.h" 3 4 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; # 79 "/usr/include/sys/procfs.h" 3 4 struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 22 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/bits/resource.h" 1 3 4 # 25 "/usr/include/bits/resource.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/bits/resource.h" 2 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_NLIMITS = 15, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 127 "/usr/include/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 154 "/usr/include/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 172 "/usr/include/bits/resource.h" 3 4 }; # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 176 "/usr/include/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 26 "/usr/include/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 70 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 88 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 26 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/unistd.h" 2 3 4 # 203 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/bits/posix_opt.h" 1 3 4 # 204 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/bits/environments.h" 1 3 4 # 23 "/usr/include/bits/environments.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/environments.h" 2 3 4 # 208 "/usr/include/unistd.h" 2 3 4 # 218 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 219 "/usr/include/unistd.h" 2 3 4 typedef __ssize_t ssize_t; # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 228 "/usr/include/unistd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 256 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 288 "/usr/include/unistd.h" 3 4 extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, __const char *__file, int __type, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; # 331 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__)); # 350 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, __const void *__buf, size_t __n) ; # 373 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, __const void *__buf, size_t __n, __off_t __offset) ; # 414 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__)) ; # 429 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__)); # 441 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__)); extern int usleep (__useconds_t __useconds); # 466 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) ; extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, __const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__)) ; # 508 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__)) ; # 522 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__)); # 540 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (__const char *__path, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int execv (__const char *__path, char *__const __argv[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (__const char *__file, char *__const __argv[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (__const char *__file, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 595 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/bits/confname.h" 1 3 4 # 26 "/usr/include/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 607 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (__const char *__path, int __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__)); # 643 "/usr/include/unistd.h" 3 4 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__)); # 669 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__)); # 686 "/usr/include/unistd.h" 3 4 extern __pid_t setsid (void) __attribute__ ((__nothrow__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__)) ; # 719 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__)); extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__)); extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__)); extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__)); extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__)); extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__)); # 775 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__)); extern int ttyslot (void) __attribute__ ((__nothrow__)); extern int link (__const char *__from, __const char *__to) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, __const char *__from, int __tofd, __const char *__to, int __flags) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (__const char *__from, __const char *__to) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (__const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (__const char *__from, int __tofd, __const char *__to) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, __const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, __const char *__name, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 890 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 59 "/usr/include/getopt.h" 3 4 extern char *optarg; # 73 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 152 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__)); # 891 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (__const char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (__const char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__)); extern int revoke (__const char *__file) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int acct (__const char *__name) __attribute__ ((__nothrow__)); extern char *getusershell (void) __attribute__ ((__nothrow__)); extern void endusershell (void) __attribute__ ((__nothrow__)); extern void setusershell (void) __attribute__ ((__nothrow__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__)) ; extern int chroot (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1))); # 976 "/usr/include/unistd.h" 3 4 extern int fsync (int __fd); extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__)); extern int getpagesize (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__)); # 1007 "/usr/include/unistd.h" 3 4 extern int truncate (__const char *__file, __off_t __length) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 1026 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ; # 1047 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__)); # 1068 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__)); # 1091 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1122 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1151 "/usr/include/unistd.h" 3 4 extern char *ctermid (char *__s) __attribute__ ((__nothrow__)); # 1160 "/usr/include/unistd.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 1 3 4 # 9 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 2 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 26 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 24 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 201 "/usr/include/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 25 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 44 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 4 # 40 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/sys/uio.h" 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 31 "/usr/include/sys/socket.h" 2 3 4 # 40 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 29 "/usr/include/bits/socket.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 30 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 171 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 187 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 274 "/usr/include/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 304 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 331 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 377 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 378 "/usr/include/bits/socket.h" 2 3 4 # 411 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); # 129 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); # 214 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 254 "/usr/include/sys/socket.h" 3 4 # 26 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 198 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 225 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 356 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/bits/in.h" 1 3 4 # 99 "/usr/include/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 357 "/usr/include/netinet/in.h" 2 3 4 # 365 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 377 "/usr/include/netinet/in.h" 2 3 4 # 440 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__)); # 565 "/usr/include/netinet/in.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.headers/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-6utHXg/config.utilities.cacheDetails Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-6utHXg/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST check_siginfo_t from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-6utHXg/config.types Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:13:11: warning: unused variable ‘a’ [-Wunused-variable] siginfo_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:13:1: error: unknown type name ‘__int64’ __int64 a;; ^ /tmp/petsc-6utHXg/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.types/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.types/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.types/conftest.c" # 1 "/tmp/petsc-6utHXg/config.types/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.types/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.types/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 3 "/tmp/petsc-6utHXg/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:30:9: warning: ‘t’ is used uninitialized in this function [-Wuninitialized] *t++ = 0; ^ /tmp/petsc-6utHXg/config.types/conftest.c:46:25: warning: ‘b’ is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:11:3: error: unknown type name ‘not’ not big endian ^ /tmp/petsc-6utHXg/config.types/conftest.c:11:11: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘endian’ not big endian ^ Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:356) ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -lfpe -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -lfpe -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-6utHXg/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_sin() { double x = 0,y; y = sin(x); ^ /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-6utHXg/config.libraries/conftest.c:8:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_floor() { double x = 0,y; y = floor(x); ^ /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-6utHXg/config.libraries/conftest.c:11:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_log10() { double x = 0,y; y = log10(x); ^ /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-6utHXg/config.libraries/conftest.c:14:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_pow() { double x = 0,y ; y = pow(x, x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_erf’: /tmp/petsc-6utHXg/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_erf() { double x = 0,y; y = erf(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_tgamma’: /tmp/petsc-6utHXg/config.libraries/conftest.c:5:44: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double x = 0,y; y = tgamma(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:293) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:293) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_log2’: /tmp/petsc-6utHXg/config.libraries/conftest.c:5:42: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_log2() { double x = 1,y; y = log2(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log2(double); static void _check_log2() { double x = 1,y; y = log2(x); ; } int main() { _check_log2();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkCompression from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:302) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:302) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-6utHXg/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-6utHXg/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_compress': conftest.c:(.text+0x43): undefined reference to `compress' /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_uncompress': conftest.c:(.text+0x8f): undefined reference to `uncompress' collect2: error: ld returned 1 exit status Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-6utHXg/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-6utHXg/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-6utHXg/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -lz -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBZ" to "1" Popping language C Using libz for the compression library ================================================================================ TEST checkRealtime from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:323) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:323) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:339) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:339) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': conftest.c:(.text+0xa): undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': conftest.c:(.text+0xa): undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/libraryOptions.py:89) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:89) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_SIZE" to "PETSC_SIZEOF_SHORT" ================================================================================ TEST configureCPURelax from config.atomics(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-6utHXg/config.atomics Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.atomics/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.atomics/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.atomics/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.atomics/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST checkMemcmp from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /tmp/petsc-6utHXg/config.functions Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.functions/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.functions/conftest Executing: /tmp/petsc-6utHXg/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 11 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 67 "/usr/include/linux/kernel.h" 3 4 struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 11 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 67 "/usr/include/linux/kernel.h" 3 4 struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 26 "/usr/include/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__)); extern int get_nprocs (void) __attribute__ ((__nothrow__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-6utHXg/config.functions/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.functions/conftest.c:17:1: warning: implicit declaration of function ‘sysinfo’ [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vprintf’ char vprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_VPRINTF" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl ================================================================================ TEST checkVFPrintf from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vfprintf’ char vfprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_VFPRINTF" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.functions/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.functions/conftest.c:6:1: warning: implicit declaration of function ‘_vsnprintf’ [-Wimplicit-function-declaration] _vsnprintf(0,0,0,0); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { _vsnprintf(0,0,0,0); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x1e): undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status Checking for functions [vsnprintf] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vsnprintf’ char vsnprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl ================================================================================ TEST checkNanosleep from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:206) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:206) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:182) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:182) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:192) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:192) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-6utHXg/config.functions/conftest.c:6:5: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:198) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:198) Checks whether the variable argument list functionality is working Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _mkdir time sysctlbyname stricmp] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ‘snprintf’ char snprintf(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘bzero’ char bzero(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:36:6: warning: conflicting types for built-in function ‘fork’ char fork(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:48:6: warning: conflicting types for built-in function ‘strcasecmp’ char strcasecmp(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:52:6: warning: conflicting types for built-in function ‘memmove’ char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _mkdir(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': /tmp/petsc-6utHXg/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x1e): undefined reference to `_sleep' conftest.c:(.text+0x50): undefined reference to `_getcwd' conftest.c:(.text+0x6e): undefined reference to `_lseek' conftest.c:(.text+0x82): undefined reference to `_access' conftest.c:(.text+0xd2): undefined reference to `_snprintf' conftest.c:(.text+0x104): undefined reference to `sbreak' conftest.c:(.text+0x14a): undefined reference to `_set_output_format' conftest.c:(.text+0x154): undefined reference to `PXFGETARG' conftest.c:(.text+0x1c2): undefined reference to `_mkdir' conftest.c:(.text+0x1d6): undefined reference to `sysctlbyname' conftest.c:(.text+0x1e0): undefined reference to `stricmp' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:17:6: warning: conflicting types for built-in function ‘bzero’ char bzero(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:26:6: warning: conflicting types for built-in function ‘fork’ char fork(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘strcasecmp’ char strcasecmp(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:23:6: warning: conflicting types for built-in function ‘memmove’ char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_sleep' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’ char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [getwd] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': /tmp/petsc-6utHXg/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_lseek' collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_access' collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Checking for functions [sysctlbyname] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `stricmp' collect2: error: ld returned 1 exit status ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language FC Popping language FC Pushing language C Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C Checking for functions [get_command_argument_] in library [''] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_get_command_argument_': conftest.c:(.text+0xa): undefined reference to `get_command_argument_' collect2: error: ld returned 1 exit status Popping language C Checking for functions [getarg_] in library [''] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_getarg_': conftest.c:(.text+0xa): undefined reference to `getarg_' collect2: error: ld returned 1 exit status Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Checking for functions [ipxfargc_] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [iargc_] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `iargc_' collect2: error: ld returned 1 exit status Checking for functions [GETARG@16] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.functions/conftest.c:13:12: error: stray ‘@’ in program char GETARG@16(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:13:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before numeric constant char GETARG@16(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.functions/conftest.c:21:27: error: missing ')' after "defined" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-6utHXg/config.functions/conftest.c:21:28: error: missing binary operator before token "16" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-6utHXg/config.functions/conftest.c:24:7: error: stray ‘@’ in program GETARG@16(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:24:1: error: ‘GETARG’ undeclared (first use in this function) GETARG@16(); ^ /tmp/petsc-6utHXg/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-6utHXg/config.functions/conftest.c:24:8: error: expected ‘;’ before numeric constant GETARG@16(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) GETARG@16_will_always_fail_with_ENOSYS(); #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.functions/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.functions/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm Defined "HAVE__GFORTRAN_IARGC" to "1" ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-6utHXg/config.utilities.featureTestMacros Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMissingDefines from config.utilities.missing(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /tmp/petsc-6utHXg/config.utilities.missing Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.utilities.missing/conftest.c:6:9: warning: unused variable ‘foo’ [-Wunused-variable] u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:110) Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:135) Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-6utHXg/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.utilities.missing/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language Cxx ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^compilation terminated.: Checking for header: fpxcp.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^compilation terminated.: Checking for header: floatingpoint.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST configureMkdir from config.programs(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mkdir...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mkdir...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mkdir...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mkdir...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/mkdir...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/mkdir...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/mkdir...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/mkdir...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mkdir...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/mkdir...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mkdir...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mkdir...not found Checking for program /usr/lib64/qt-3.3/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/autoreconf...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/autoreconf...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/autoreconf...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/autoreconf...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/autoreconf...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/autoreconf...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/autoreconf...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/autoreconf...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/autoreconf...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/autoreconf...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/autoreconf...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/autoreconf...not found Checking for program /usr/lib64/qt-3.3/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-6utHXg/config.programs Executing: cd /tmp/petsc-6utHXg/config.programs/autoconfdir&&/usr/bin/autoreconf autoreconf test successful! ================================================================================ TEST configurePrograms from config.programs(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/programs.py:66) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:66) Check for the programs needed to build and run PETSc Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/sh...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/sh...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/sh...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/sh...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/sh...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/sh...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/sh...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/sh...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/sh...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/sh...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/sh...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/sh...not found Checking for program /usr/lib64/qt-3.3/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/sed...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/sed...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/sed...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/sed...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/sed...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/sed...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/sed...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/sed...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/sed...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/sed...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/sed...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/sed...not found Checking for program /usr/lib64/qt-3.3/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-6utHXg/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mv...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mv...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mv...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mv...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/mv...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/mv...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/mv...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/mv...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mv...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/mv...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mv...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mv...not found Checking for program /usr/lib64/qt-3.3/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/cp...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cp...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/cp...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cp...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/cp...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/cp...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/cp...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/cp...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/cp...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/cp...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/cp...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cp...not found Checking for program /usr/lib64/qt-3.3/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/grep...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/grep...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/grep...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/grep...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/grep...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/grep...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/grep...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/grep...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/grep...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/grep...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/grep...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/grep...not found Checking for program /usr/lib64/qt-3.3/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/rm...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/rm...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/rm...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/rm...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/rm...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/rm...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/rm...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/rm...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/rm...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/rm...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/rm...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/rm...not found Checking for program /usr/lib64/qt-3.3/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/diff...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/diff...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/diff...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/diff...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/diff...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/diff...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/diff...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/diff...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/diff...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/diff...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/diff...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/diff...not found Checking for program /usr/lib64/qt-3.3/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-6utHXg/config.programs/diff1" "/tmp/petsc-6utHXg/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/ps...not found Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/bin/win32fe/ps...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gzip...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gzip...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gzip...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gzip...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/gzip...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/gzip...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/gzip...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/gzip...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/gzip...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gzip...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gzip...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gzip...not found Checking for program /usr/lib64/qt-3.3/bin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMake from config.packages.make(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/make.py:66) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:66) Check for user specified make - or gmake, make Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gmake...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gmake...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gmake...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gmake...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/gmake...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/gmake...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/gmake...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/gmake...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/gmake...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gmake...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/gmake...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/gmake...not found Checking for program /usr/lib64/qt-3.3/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/make.py:84) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:84) Check for GNU make Executing: /usr/bin/gmake --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-redhat-linux-gnu Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:480) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:480) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents: ['share', 'etc', 'lib', 'bin', 'include'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Checking for headers User specified root directory MPI: ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.headers -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 1 # 223 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 147 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 224 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 2 # 256 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" # 1 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi_portable_platform.h" 1 # 257 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 2 # 321 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" typedef ptrdiff_t MPI_Aint; typedef long long MPI_Offset; typedef long long MPI_Count; typedef struct ompi_communicator_t *MPI_Comm; typedef struct ompi_datatype_t *MPI_Datatype; typedef struct ompi_errhandler_t *MPI_Errhandler; typedef struct ompi_file_t *MPI_File; typedef struct ompi_group_t *MPI_Group; typedef struct ompi_info_t *MPI_Info; typedef struct ompi_op_t *MPI_Op; typedef struct ompi_request_t *MPI_Request; typedef struct ompi_message_t *MPI_Message; typedef struct ompi_status_public_t MPI_Status; typedef struct ompi_win_t *MPI_Win; typedef struct mca_base_var_enum_t *MPI_T_enum; typedef struct ompi_mpit_cvar_handle_t *MPI_T_cvar_handle; typedef struct mca_base_pvar_handle_t *MPI_T_pvar_handle; typedef struct mca_base_pvar_session_t *MPI_T_pvar_session; struct ompi_status_public_t { int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; int _cancelled; size_t _ucount; }; typedef struct ompi_status_public_t ompi_status_public_t; # 368 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" typedef int (MPI_Copy_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Delete_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype, MPI_Aint *, void *); typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn ; typedef void (ompi_file_errhandler_fn)(MPI_File *, int *, ...); typedef ompi_file_errhandler_fn MPI_File_errhandler_fn ; typedef ompi_file_errhandler_fn MPI_File_errhandler_function; typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn ; typedef void (MPI_Handler_function)(MPI_Comm *, int *, ...); typedef void (MPI_User_function)(void *, void *, int *, MPI_Datatype *); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_cancel_function)(void *, int); # 504 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" enum { MPI_TAG_UB, MPI_HOST, MPI_IO, MPI_WTIME_IS_GLOBAL, MPI_APPNUM, MPI_LASTUSEDCODE, MPI_UNIVERSE_SIZE, MPI_WIN_BASE, MPI_WIN_SIZE, MPI_WIN_DISP_UNIT, MPI_WIN_CREATE_FLAVOR, MPI_WIN_MODEL, IMPI_CLIENT_SIZE, IMPI_CLIENT_COLOR, IMPI_HOST_SIZE, IMPI_HOST_COLOR }; # 619 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" enum { MPI_IDENT, MPI_CONGRUENT, MPI_SIMILAR, MPI_UNEQUAL }; enum { MPI_THREAD_SINGLE, MPI_THREAD_FUNNELED, MPI_THREAD_SERIALIZED, MPI_THREAD_MULTIPLE }; enum { MPI_COMBINER_NAMED, MPI_COMBINER_DUP, MPI_COMBINER_CONTIGUOUS, MPI_COMBINER_VECTOR, MPI_COMBINER_HVECTOR_INTEGER, MPI_COMBINER_HVECTOR, MPI_COMBINER_INDEXED, MPI_COMBINER_HINDEXED_INTEGER, MPI_COMBINER_HINDEXED, MPI_COMBINER_INDEXED_BLOCK, MPI_COMBINER_STRUCT_INTEGER, MPI_COMBINER_STRUCT, MPI_COMBINER_SUBARRAY, MPI_COMBINER_DARRAY, MPI_COMBINER_F90_REAL, MPI_COMBINER_F90_COMPLEX, MPI_COMBINER_F90_INTEGER, MPI_COMBINER_RESIZED, MPI_COMBINER_HINDEXED_BLOCK }; enum { MPI_COMM_TYPE_SHARED }; enum { MPI_T_VERBOSITY_USER_BASIC, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL }; enum { MPI_T_SCOPE_CONSTANT, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ }; enum { MPI_T_BIND_NO_OBJECT, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO }; enum { MPI_T_PVAR_CLASS_STATE, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC }; # 808 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_DELETE_FN( MPI_Datatype datatype, int type_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_COPY_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_DUP_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_DELETE_FN( MPI_Win window, int win_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_COPY_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_DUP_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); # 878 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_world; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_self; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_null; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_empty; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_null; __attribute__((visibility("default"))) extern struct ompi_predefined_request_t ompi_request_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_no_proc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_null; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_min; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_max; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_sum; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_prod; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_land; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_band; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_maxloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_minloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_replace; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_no_op; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_datatype_null; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_lb ; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ub ; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_signed_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_byte; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_wchar; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_packed; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_character; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_longdbl_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex32; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_aint; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_offset; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_count; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_float_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_long_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errhandler_null; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_are_fatal; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_return; __attribute__((visibility("default"))) extern struct ompi_predefined_win_t ompi_mpi_win_null; __attribute__((visibility("default"))) extern struct ompi_predefined_file_t ompi_mpi_file_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_env; __attribute__((visibility("default"))) extern int *MPI_F_STATUS_IGNORE; __attribute__((visibility("default"))) extern int *MPI_F_STATUSES_IGNORE; # 1171 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) int MPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int MPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int MPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int MPI_Address(void *location, MPI_Aint *address) ; __attribute__((visibility("default"))) int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Attr_delete(MPI_Comm comm, int keyval) ; __attribute__((visibility("default"))) int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ; __attribute__((visibility("default"))) int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) ; __attribute__((visibility("default"))) int MPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int MPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int MPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int MPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int MPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int MPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm MPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int MPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int MPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int MPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int MPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int MPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int MPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) MPI_Errhandler MPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ; __attribute__((visibility("default"))) int MPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int MPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File MPI_File_f2c(int file); __attribute__((visibility("default"))) int MPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int MPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int MPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int MPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int MPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int MPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int MPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int MPI_Finalize(void); __attribute__((visibility("default"))) int MPI_Finalized(int *flag); __attribute__((visibility("default"))) int MPI_Free_mem(void *base); __attribute__((visibility("default"))) int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int MPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int MPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group MPI_Group_f2c(int group); __attribute__((visibility("default"))) int MPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int MPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int MPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info MPI_Info_f2c(int info); __attribute__((visibility("default"))) int MPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int MPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int MPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int MPI_Initialized(int *flag); __attribute__((visibility("default"))) int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) ; __attribute__((visibility("default"))) int MPI_Keyval_free(int *keyval) ; __attribute__((visibility("default"))) int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int MPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message MPI_Message_f2c(int message); __attribute__((visibility("default"))) int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int MPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int MPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int MPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op MPI_Op_f2c(int op); __attribute__((visibility("default"))) int MPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Query_thread(int *provided); __attribute__((visibility("default"))) int MPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); __attribute__((visibility("default"))) int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int MPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request MPI_Request_f2c(int request); __attribute__((visibility("default"))) int MPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int MPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int MPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int MPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int MPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int MPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ; __attribute__((visibility("default"))) int MPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype MPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int MPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int MPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int MPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int MPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int MPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) ; __attribute__((visibility("default"))) int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int MPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int MPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int MPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int MPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) ; __attribute__((visibility("default"))) int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status *array_of_statuses); __attribute__((visibility("default"))) int MPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int MPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int MPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int MPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win MPI_Win_f2c(int win); __attribute__((visibility("default"))) int MPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int MPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int MPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double MPI_Wtick(void); __attribute__((visibility("default"))) double MPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int PMPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int PMPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int PMPI_Address(void *location, MPI_Aint *address) ; __attribute__((visibility("default"))) int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Attr_delete(MPI_Comm comm, int keyval) ; __attribute__((visibility("default"))) int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ; __attribute__((visibility("default"))) int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) ; __attribute__((visibility("default"))) int PMPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int PMPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int PMPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int PMPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm PMPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int PMPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int PMPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int PMPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int PMPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int PMPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) MPI_Errhandler PMPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ; __attribute__((visibility("default"))) int PMPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int PMPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File PMPI_File_f2c(int file); __attribute__((visibility("default"))) int PMPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int PMPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int PMPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int PMPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int PMPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int PMPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int PMPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int PMPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int PMPI_Finalize(void); __attribute__((visibility("default"))) int PMPI_Finalized(int *flag); __attribute__((visibility("default"))) int PMPI_Free_mem(void *base); __attribute__((visibility("default"))) int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int PMPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group PMPI_Group_f2c(int group); __attribute__((visibility("default"))) int PMPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int PMPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int PMPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info PMPI_Info_f2c(int info); __attribute__((visibility("default"))) int PMPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int PMPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int PMPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int PMPI_Initialized(int *flag); __attribute__((visibility("default"))) int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) ; __attribute__((visibility("default"))) int PMPI_Keyval_free(int *keyval) ; __attribute__((visibility("default"))) int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int PMPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message PMPI_Message_f2c(int message); __attribute__((visibility("default"))) int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int PMPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int PMPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op PMPI_Op_f2c(int op); __attribute__((visibility("default"))) int PMPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Query_thread(int *provided); __attribute__((visibility("default"))) int PMPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op); __attribute__((visibility("default"))) int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int PMPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request PMPI_Request_f2c(int request); __attribute__((visibility("default"))) int PMPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int PMPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int PMPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int PMPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int PMPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int PMPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ; __attribute__((visibility("default"))) int PMPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype PMPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int PMPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int PMPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int PMPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int PMPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int PMPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) ; __attribute__((visibility("default"))) int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int PMPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int PMPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int PMPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int PMPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) ; __attribute__((visibility("default"))) int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int PMPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int PMPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int PMPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win PMPI_Win_f2c(int win); __attribute__((visibility("default"))) int PMPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int PMPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double PMPI_Wtick(void); __attribute__((visibility("default"))) double PMPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int PMPI_T_finalize (void); __attribute__((visibility("default"))) int PMPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int PMPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int PMPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int PMPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int PMPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int PMPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int PMPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int MPI_T_finalize (void); __attribute__((visibility("default"))) int MPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int MPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int MPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int MPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int MPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int MPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int MPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int MPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /tmp/petsc-6utHXg/config.packages.MPI Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:6:10: warning: unused variable ‘a’ [-Wunused-variable] MPI_Fint a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:180) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:180) Check for functions added to the interface in MPI-2 Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:6:1: warning: initialization makes pointer from integer without a cast int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; ^ /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:6:1: warning: (near initialization for ‘old_types[1]’) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl ================================================================================ TEST configureTypes from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "8" Checking for size of type: MPI_Fint Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.types/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.types/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.types/conftest Executing: /tmp/petsc-6utHXg/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.packages.MPI/conftest Executing: /tmp/petsc-6utHXg/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.packages.MPI/conftest Executing: /tmp/petsc-6utHXg/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.packages.MPI/conftest Executing: /tmp/petsc-6utHXg/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:322) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:322) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:341) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:341) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': conftest.c:(.text+0xa): undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:351) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:351) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.libraries/conftest.cc: In function ‘void _check_MPI_Finalize()’: /tmp/petsc-6utHXg/config.libraries/conftest.cc:5:41: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:369) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:369) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" end Checking for fortran mpi_init() Checking for functions [] in library [] [] Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language FC Checking for mpi.mod Checking for functions [] in library [] [] Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:394) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:394) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:9:5: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:9:5: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:9:5: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:9:5: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:9:5: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:9:5: warning: ‘disp’ is used uninitialized in this function [-Wuninitialized] /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:9:5: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:8:5: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:7:10: warning: unused variable ‘info’ [-Wunused-variable] MPI_Info info; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:456) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:456) Find MPI include paths from "mpicc -show" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -show stdout: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi compilers: Checking arg /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc compilers: Checking arg -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include compilers: Found include directory: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include compilers: Checking arg -pthread compilers: Checking arg -Wl,-rpath compilers: Checking arg -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Checking arg -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib compilers: Checking arg -lmpi ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:431) TESTING: checkMPICHorOpenMPI from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:431) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:4:17: error: ‘MPICH_NUMVERSION’ undeclared here (not in a function) int mpich_ver = MPICH_NUMVERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.headers /tmp/petsc-6utHXg/config.packages.MPI/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.packages.MPI/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.packages.MPI/conftest.c" # 1 "/tmp/petsc-6utHXg/config.packages.MPI/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.packages.MPI/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.packages.MPI/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.packages.MPI/conftest.c" 2 # 1 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 1 # 223 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 147 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 224 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 2 # 256 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" # 1 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi_portable_platform.h" 1 # 257 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 2 # 321 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" typedef ptrdiff_t MPI_Aint; typedef long long MPI_Offset; typedef long long MPI_Count; typedef struct ompi_communicator_t *MPI_Comm; typedef struct ompi_datatype_t *MPI_Datatype; typedef struct ompi_errhandler_t *MPI_Errhandler; typedef struct ompi_file_t *MPI_File; typedef struct ompi_group_t *MPI_Group; typedef struct ompi_info_t *MPI_Info; typedef struct ompi_op_t *MPI_Op; typedef struct ompi_request_t *MPI_Request; typedef struct ompi_message_t *MPI_Message; typedef struct ompi_status_public_t MPI_Status; typedef struct ompi_win_t *MPI_Win; typedef struct mca_base_var_enum_t *MPI_T_enum; typedef struct ompi_mpit_cvar_handle_t *MPI_T_cvar_handle; typedef struct mca_base_pvar_handle_t *MPI_T_pvar_handle; typedef struct mca_base_pvar_session_t *MPI_T_pvar_session; struct ompi_status_public_t { int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; int _cancelled; size_t _ucount; }; typedef struct ompi_status_public_t ompi_status_public_t; # 368 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" typedef int (MPI_Copy_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Delete_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype, MPI_Aint *, void *); typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn ; typedef void (ompi_file_errhandler_fn)(MPI_File *, int *, ...); typedef ompi_file_errhandler_fn MPI_File_errhandler_fn ; typedef ompi_file_errhandler_fn MPI_File_errhandler_function; typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn ; typedef void (MPI_Handler_function)(MPI_Comm *, int *, ...); typedef void (MPI_User_function)(void *, void *, int *, MPI_Datatype *); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_cancel_function)(void *, int); # 504 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" enum { MPI_TAG_UB, MPI_HOST, MPI_IO, MPI_WTIME_IS_GLOBAL, MPI_APPNUM, MPI_LASTUSEDCODE, MPI_UNIVERSE_SIZE, MPI_WIN_BASE, MPI_WIN_SIZE, MPI_WIN_DISP_UNIT, MPI_WIN_CREATE_FLAVOR, MPI_WIN_MODEL, IMPI_CLIENT_SIZE, IMPI_CLIENT_COLOR, IMPI_HOST_SIZE, IMPI_HOST_COLOR }; # 619 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" enum { MPI_IDENT, MPI_CONGRUENT, MPI_SIMILAR, MPI_UNEQUAL }; enum { MPI_THREAD_SINGLE, MPI_THREAD_FUNNELED, MPI_THREAD_SERIALIZED, MPI_THREAD_MULTIPLE }; enum { MPI_COMBINER_NAMED, MPI_COMBINER_DUP, MPI_COMBINER_CONTIGUOUS, MPI_COMBINER_VECTOR, MPI_COMBINER_HVECTOR_INTEGER, MPI_COMBINER_HVECTOR, MPI_COMBINER_INDEXED, MPI_COMBINER_HINDEXED_INTEGER, MPI_COMBINER_HINDEXED, MPI_COMBINER_INDEXED_BLOCK, MPI_COMBINER_STRUCT_INTEGER, MPI_COMBINER_STRUCT, MPI_COMBINER_SUBARRAY, MPI_COMBINER_DARRAY, MPI_COMBINER_F90_REAL, MPI_COMBINER_F90_COMPLEX, MPI_COMBINER_F90_INTEGER, MPI_COMBINER_RESIZED, MPI_COMBINER_HINDEXED_BLOCK }; enum { MPI_COMM_TYPE_SHARED }; enum { MPI_T_VERBOSITY_USER_BASIC, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL }; enum { MPI_T_SCOPE_CONSTANT, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ }; enum { MPI_T_BIND_NO_OBJECT, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO }; enum { MPI_T_PVAR_CLASS_STATE, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC }; # 808 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_DELETE_FN( MPI_Datatype datatype, int type_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_COPY_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_DUP_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_DELETE_FN( MPI_Win window, int win_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_COPY_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_DUP_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); # 878 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_world; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_self; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_null; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_empty; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_null; __attribute__((visibility("default"))) extern struct ompi_predefined_request_t ompi_request_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_no_proc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_null; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_min; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_max; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_sum; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_prod; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_land; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_band; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_maxloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_minloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_replace; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_no_op; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_datatype_null; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_lb ; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ub ; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_signed_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_byte; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_wchar; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_packed; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_character; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_longdbl_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex32; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_aint; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_offset; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_count; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_float_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_long_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errhandler_null; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_are_fatal; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_return; __attribute__((visibility("default"))) extern struct ompi_predefined_win_t ompi_mpi_win_null; __attribute__((visibility("default"))) extern struct ompi_predefined_file_t ompi_mpi_file_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_env; __attribute__((visibility("default"))) extern int *MPI_F_STATUS_IGNORE; __attribute__((visibility("default"))) extern int *MPI_F_STATUSES_IGNORE; # 1171 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) int MPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int MPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int MPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int MPI_Address(void *location, MPI_Aint *address) ; __attribute__((visibility("default"))) int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Attr_delete(MPI_Comm comm, int keyval) ; __attribute__((visibility("default"))) int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ; __attribute__((visibility("default"))) int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) ; __attribute__((visibility("default"))) int MPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int MPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int MPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int MPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int MPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int MPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm MPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int MPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int MPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int MPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int MPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int MPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int MPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) MPI_Errhandler MPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ; __attribute__((visibility("default"))) int MPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int MPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File MPI_File_f2c(int file); __attribute__((visibility("default"))) int MPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int MPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int MPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int MPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int MPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int MPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int MPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int MPI_Finalize(void); __attribute__((visibility("default"))) int MPI_Finalized(int *flag); __attribute__((visibility("default"))) int MPI_Free_mem(void *base); __attribute__((visibility("default"))) int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int MPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int MPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group MPI_Group_f2c(int group); __attribute__((visibility("default"))) int MPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int MPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int MPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info MPI_Info_f2c(int info); __attribute__((visibility("default"))) int MPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int MPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int MPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int MPI_Initialized(int *flag); __attribute__((visibility("default"))) int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) ; __attribute__((visibility("default"))) int MPI_Keyval_free(int *keyval) ; __attribute__((visibility("default"))) int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int MPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message MPI_Message_f2c(int message); __attribute__((visibility("default"))) int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int MPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int MPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int MPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op MPI_Op_f2c(int op); __attribute__((visibility("default"))) int MPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Query_thread(int *provided); __attribute__((visibility("default"))) int MPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); __attribute__((visibility("default"))) int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int MPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request MPI_Request_f2c(int request); __attribute__((visibility("default"))) int MPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int MPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int MPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int MPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int MPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int MPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ; __attribute__((visibility("default"))) int MPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype MPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int MPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int MPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int MPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int MPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int MPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) ; __attribute__((visibility("default"))) int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int MPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int MPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int MPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int MPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) ; __attribute__((visibility("default"))) int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status *array_of_statuses); __attribute__((visibility("default"))) int MPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int MPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int MPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int MPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win MPI_Win_f2c(int win); __attribute__((visibility("default"))) int MPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int MPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int MPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double MPI_Wtick(void); __attribute__((visibility("default"))) double MPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int PMPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int PMPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int PMPI_Address(void *location, MPI_Aint *address) ; __attribute__((visibility("default"))) int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Attr_delete(MPI_Comm comm, int keyval) ; __attribute__((visibility("default"))) int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ; __attribute__((visibility("default"))) int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) ; __attribute__((visibility("default"))) int PMPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int PMPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int PMPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int PMPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm PMPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int PMPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int PMPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int PMPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int PMPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int PMPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) MPI_Errhandler PMPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ; __attribute__((visibility("default"))) int PMPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int PMPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File PMPI_File_f2c(int file); __attribute__((visibility("default"))) int PMPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int PMPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int PMPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int PMPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int PMPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int PMPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int PMPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int PMPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int PMPI_Finalize(void); __attribute__((visibility("default"))) int PMPI_Finalized(int *flag); __attribute__((visibility("default"))) int PMPI_Free_mem(void *base); __attribute__((visibility("default"))) int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int PMPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group PMPI_Group_f2c(int group); __attribute__((visibility("default"))) int PMPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int PMPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int PMPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info PMPI_Info_f2c(int info); __attribute__((visibility("default"))) int PMPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int PMPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int PMPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int PMPI_Initialized(int *flag); __attribute__((visibility("default"))) int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) ; __attribute__((visibility("default"))) int PMPI_Keyval_free(int *keyval) ; __attribute__((visibility("default"))) int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int PMPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message PMPI_Message_f2c(int message); __attribute__((visibility("default"))) int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int PMPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int PMPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op PMPI_Op_f2c(int op); __attribute__((visibility("default"))) int PMPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Query_thread(int *provided); __attribute__((visibility("default"))) int PMPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op); __attribute__((visibility("default"))) int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int PMPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request PMPI_Request_f2c(int request); __attribute__((visibility("default"))) int PMPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int PMPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int PMPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int PMPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int PMPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int PMPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ; __attribute__((visibility("default"))) int PMPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype PMPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int PMPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int PMPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int PMPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int PMPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int PMPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) ; __attribute__((visibility("default"))) int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int PMPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int PMPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int PMPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int PMPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) ; __attribute__((visibility("default"))) int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int PMPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int PMPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int PMPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win PMPI_Win_f2c(int win); __attribute__((visibility("default"))) int PMPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int PMPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double PMPI_Wtick(void); __attribute__((visibility("default"))) double PMPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int PMPI_T_finalize (void); __attribute__((visibility("default"))) int PMPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int PMPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int PMPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int PMPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int PMPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int PMPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int PMPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int MPI_T_finalize (void); __attribute__((visibility("default"))) int MPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int MPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int MPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int MPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int MPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int MPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int MPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int MPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); # 4 "/tmp/petsc-6utHXg/config.packages.MPI/conftest.c" 2 int ompi_major = 1; int ompi_minor = 8; int ompi_release = 6; Defined "HAVE_OMPI_MAJOR_VERSION" to "1" Defined "HAVE_OMPI_MINOR_VERSION" to "8" Defined "HAVE_OMPI_RELEASE_VERSION" to "6" Checking for functions [MPI_Alltoallw] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': conftest.c:(.text+0xa): undefined reference to `MPIX_Iallreduce' collect2: error: ld returned 1 exit status Popping language C Checking for functions [MPIX_Ibarrier] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_MPIX_Ibarrier': conftest.c:(.text+0xa): undefined reference to `MPIX_Ibarrier' collect2: error: ld returned 1 exit status Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_MPIDI_CH3I_sock_set': conftest.c:(.text+0xa): undefined reference to `MPIDI_CH3I_sock_set' collect2: error: ld returned 1 exit status Popping language C Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_MPIDI_CH3I_sock_fixed_nbc_progress': conftest.c:(.text+0xa): undefined reference to `MPIDI_CH3I_sock_fixed_nbc_progress' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:130) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:130) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/MPI.py:143) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:143) Checking for mpiexec Pushing language C Popping language C Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpiexec...found Defined make macro "MPIEXEC" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpiexec" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.MPI/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.MPI/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/petsc-6utHXg/config.libraries/lib1.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/petsc-6utHXg/config.libraries/lib2.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl -ldl Testing executable /tmp/petsc-6utHXg/config.libraries/conftest to see if it can be run Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpiexec /tmp/petsc-6utHXg/config.libraries/conftest Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpiexec /tmp/petsc-6utHXg/config.libraries/conftest Library was shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.valgrind(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:626) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:626) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Compiler specific search VALGRIND: ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.headers -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.headers -I/usr/local/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.headers -I/usr/local/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2stderr: /tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-6utHXg/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: Popping language C VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Linux =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.ssl(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/ssl.py:23) TESTING: configureLibrary from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:23) ================================================================================== Checking for a functional ssl Checking for library in Compiler specific search SSL: [] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_SSLv23_method': conftest.c:(.text+0xa): undefined reference to `SSLv23_method' collect2: error: ld returned 1 exit status Popping language C Checking for library in Compiler specific search SSL: ['libssl.a', 'libcrypto.a'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library ['libssl.a', 'libcrypto.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -lssl -lcrypto -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBSSL" to "1" Defined "HAVE_LIBCRYPTO" to "1" Popping language C Checking for headers Compiler specific search SSL: ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['openssl/ssl.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.headers -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/openssl/ssl.h" 1 3 4 # 146 "/usr/include/openssl/ssl.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 147 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/comp.h" 1 3 4 # 1 "/usr/include/openssl/crypto.h" 1 3 4 # 120 "/usr/include/openssl/crypto.h" 3 4 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 121 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 123 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 30 "/usr/include/stdio.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 35 "/usr/include/stdio.h" 2 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 75 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 32 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 83 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 53 "/usr/include/_G_config.h" 3 4 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 33 "/usr/include/libio.h" 2 3 4 # 53 "/usr/include/libio.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdarg.h" 1 3 4 # 40 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 54 "/usr/include/libio.h" 2 3 4 # 170 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 271 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 4 __off64_t _offset; # 328 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 364 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 416 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 460 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__)); # 490 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__)); # 76 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 109 "/usr/include/stdio.h" 3 4 typedef _G_fpos_t fpos_t; # 161 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 162 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) __attribute__ ((__nothrow__)); extern int rename (__const char *__old, __const char *__new) __attribute__ ((__nothrow__)); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) __attribute__ ((__nothrow__)); extern FILE *tmpfile (void) ; # 208 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__)) ; # 226 "/usr/include/stdio.h" 3 4 extern char *tempnam (__const char *__dir, __const char *__pfx) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 251 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 265 "/usr/include/stdio.h" 3 4 extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 4 # 305 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, __const char *__modes) __attribute__ ((__nothrow__)) ; # 318 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) __attribute__ ((__nothrow__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__)); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 416 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); # 447 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (__const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__)); # 467 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 498 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 526 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 554 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 565 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 598 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; # 660 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; # 732 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 768 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 787 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 4 # 819 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 4 # 27 "/usr/include/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern __const char *__const sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; # 868 "/usr/include/stdio.h" 3 4 extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__)); # 908 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__)); # 938 "/usr/include/stdio.h" 3 4 # 126 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/stack.h" 1 3 4 # 66 "/usr/include/openssl/stack.h" 3 4 typedef struct stack_st { int num; char **data; int sorted; int num_alloc; int (*comp)(const void *, const void *); } _STACK; int sk_num(const _STACK *); void *sk_value(const _STACK *, int); void *sk_set(_STACK *, int, void *); _STACK *sk_new(int (*cmp)(const void *, const void *)); _STACK *sk_new_null(void); void sk_free(_STACK *); void sk_pop_free(_STACK *st, void (*func)(void *)); int sk_insert(_STACK *sk, void *data, int where); void *sk_delete(_STACK *st, int loc); void *sk_delete_ptr(_STACK *st, void *p); int sk_find(_STACK *st, void *data); int sk_find_ex(_STACK *st, void *data); int sk_push(_STACK *st, void *data); int sk_unshift(_STACK *st, void *data); void *sk_shift(_STACK *st); void *sk_pop(_STACK *st); void sk_zero(_STACK *st); int (*sk_set_cmp_func(_STACK *sk, int (*c)(const void *, const void *))) (const void *, const void *); _STACK *sk_dup(_STACK *st); void sk_sort(_STACK *st); int sk_is_sorted(const _STACK *st); # 129 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/safestack.h" 1 3 4 # 113 "/usr/include/openssl/safestack.h" 3 4 typedef char *OPENSSL_STRING; typedef const char *OPENSSL_CSTRING; # 125 "/usr/include/openssl/safestack.h" 3 4 struct stack_st_OPENSSL_STRING { _STACK stack; }; typedef void *OPENSSL_BLOCK; struct stack_st_OPENSSL_BLOCK { _STACK stack; }; # 130 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/opensslv.h" 1 3 4 # 131 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/ossl_typ.h" 1 3 4 # 58 "/usr/include/openssl/ossl_typ.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 59 "/usr/include/openssl/ossl_typ.h" 2 3 4 # 79 "/usr/include/openssl/ossl_typ.h" 3 4 typedef struct asn1_string_st ASN1_INTEGER; typedef struct asn1_string_st ASN1_ENUMERATED; typedef struct asn1_string_st ASN1_BIT_STRING; typedef struct asn1_string_st ASN1_OCTET_STRING; typedef struct asn1_string_st ASN1_PRINTABLESTRING; typedef struct asn1_string_st ASN1_T61STRING; typedef struct asn1_string_st ASN1_IA5STRING; typedef struct asn1_string_st ASN1_GENERALSTRING; typedef struct asn1_string_st ASN1_UNIVERSALSTRING; typedef struct asn1_string_st ASN1_BMPSTRING; typedef struct asn1_string_st ASN1_UTCTIME; typedef struct asn1_string_st ASN1_TIME; typedef struct asn1_string_st ASN1_GENERALIZEDTIME; typedef struct asn1_string_st ASN1_VISIBLESTRING; typedef struct asn1_string_st ASN1_UTF8STRING; typedef int ASN1_BOOLEAN; typedef int ASN1_NULL; typedef struct asn1_pctx_st ASN1_PCTX; # 112 "/usr/include/openssl/ossl_typ.h" 3 4 typedef struct bignum_st BIGNUM; typedef struct bignum_ctx BN_CTX; typedef struct bn_blinding_st BN_BLINDING; typedef struct bn_mont_ctx_st BN_MONT_CTX; typedef struct bn_recp_ctx_st BN_RECP_CTX; typedef struct bn_gencb_st BN_GENCB; typedef struct buf_mem_st BUF_MEM; typedef struct evp_cipher_st EVP_CIPHER; typedef struct evp_cipher_ctx_st EVP_CIPHER_CTX; typedef struct env_md_st EVP_MD; typedef struct env_md_ctx_st EVP_MD_CTX; typedef struct evp_pkey_st EVP_PKEY; typedef struct evp_pkey_asn1_method_st EVP_PKEY_ASN1_METHOD; typedef struct evp_pkey_method_st EVP_PKEY_METHOD; typedef struct evp_pkey_ctx_st EVP_PKEY_CTX; typedef struct dh_st DH; typedef struct dh_method DH_METHOD; typedef struct dsa_st DSA; typedef struct dsa_method DSA_METHOD; typedef struct rsa_st RSA; typedef struct rsa_meth_st RSA_METHOD; typedef struct rand_meth_st RAND_METHOD; typedef struct ecdh_method ECDH_METHOD; typedef struct ecdsa_method ECDSA_METHOD; typedef struct x509_st X509; typedef struct X509_algor_st X509_ALGOR; typedef struct X509_crl_st X509_CRL; typedef struct x509_crl_method_st X509_CRL_METHOD; typedef struct x509_revoked_st X509_REVOKED; typedef struct X509_name_st X509_NAME; typedef struct X509_pubkey_st X509_PUBKEY; typedef struct x509_store_st X509_STORE; typedef struct x509_store_ctx_st X509_STORE_CTX; typedef struct pkcs8_priv_key_info_st PKCS8_PRIV_KEY_INFO; typedef struct v3_ext_ctx X509V3_CTX; typedef struct conf_st CONF; typedef struct store_st STORE; typedef struct store_method_st STORE_METHOD; typedef struct ui_st UI; typedef struct ui_method_st UI_METHOD; typedef struct st_ERR_FNS ERR_FNS; typedef struct engine_st ENGINE; typedef struct ssl_st SSL; typedef struct ssl_ctx_st SSL_CTX; typedef struct X509_POLICY_NODE_st X509_POLICY_NODE; typedef struct X509_POLICY_LEVEL_st X509_POLICY_LEVEL; typedef struct X509_POLICY_TREE_st X509_POLICY_TREE; typedef struct X509_POLICY_CACHE_st X509_POLICY_CACHE; typedef struct AUTHORITY_KEYID_st AUTHORITY_KEYID; typedef struct DIST_POINT_st DIST_POINT; typedef struct ISSUING_DIST_POINT_st ISSUING_DIST_POINT; typedef struct NAME_CONSTRAINTS_st NAME_CONSTRAINTS; typedef struct crypto_ex_data_st CRYPTO_EX_DATA; typedef int CRYPTO_EX_new(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef void CRYPTO_EX_free(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef int CRYPTO_EX_dup(CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from, void *from_d, int idx, long argl, void *argp); typedef struct ocsp_req_ctx_st OCSP_REQ_CTX; typedef struct ocsp_response_st OCSP_RESPONSE; typedef struct ocsp_responder_id_st OCSP_RESPID; # 132 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 58 "/usr/include/openssl/symhacks.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 59 "/usr/include/openssl/symhacks.h" 2 3 4 # 140 "/usr/include/openssl/crypto.h" 2 3 4 # 171 "/usr/include/openssl/crypto.h" 3 4 typedef struct openssl_item_st { int code; void *value; size_t value_size; size_t *value_length; } OPENSSL_ITEM; # 256 "/usr/include/openssl/crypto.h" 3 4 typedef struct { int references; struct CRYPTO_dynlock_value *data; } CRYPTO_dynlock; # 283 "/usr/include/openssl/crypto.h" 3 4 typedef struct bio_st BIO_dummy; struct crypto_ex_data_st { struct stack_st_void *sk; int dummy; }; struct stack_st_void { _STACK stack; }; typedef struct crypto_ex_data_func_st { long argl; void *argp; CRYPTO_EX_new *new_func; CRYPTO_EX_free *free_func; CRYPTO_EX_dup *dup_func; } CRYPTO_EX_DATA_FUNCS; struct stack_st_CRYPTO_EX_DATA_FUNCS { _STACK stack; }; # 356 "/usr/include/openssl/crypto.h" 3 4 int CRYPTO_mem_ctrl(int mode); int CRYPTO_is_mem_check_on(void); # 384 "/usr/include/openssl/crypto.h" 3 4 const char *SSLeay_version(int type); unsigned long SSLeay(void); int OPENSSL_issetugid(void); typedef struct st_CRYPTO_EX_DATA_IMPL CRYPTO_EX_DATA_IMPL; const CRYPTO_EX_DATA_IMPL *CRYPTO_get_ex_data_implementation(void); int CRYPTO_set_ex_data_implementation(const CRYPTO_EX_DATA_IMPL *i); int CRYPTO_ex_data_new_class(void); int CRYPTO_get_ex_new_index(int class_index, long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int CRYPTO_new_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad); int CRYPTO_dup_ex_data(int class_index, CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from); void CRYPTO_free_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad); int CRYPTO_set_ex_data(CRYPTO_EX_DATA *ad, int idx, void *val); void *CRYPTO_get_ex_data(const CRYPTO_EX_DATA *ad,int idx); void CRYPTO_cleanup_all_ex_data(void); int CRYPTO_get_new_lockid(char *name); int CRYPTO_num_locks(void); void CRYPTO_lock(int mode, int type,const char *file,int line); void CRYPTO_set_locking_callback(void (*func)(int mode,int type, const char *file,int line)); void (*CRYPTO_get_locking_callback(void))(int mode,int type,const char *file, int line); void CRYPTO_set_add_lock_callback(int (*func)(int *num,int mount,int type, const char *file, int line)); int (*CRYPTO_get_add_lock_callback(void))(int *num,int mount,int type, const char *file,int line); typedef struct crypto_threadid_st { void *ptr; unsigned long val; } CRYPTO_THREADID; void CRYPTO_THREADID_set_numeric(CRYPTO_THREADID *id, unsigned long val); void CRYPTO_THREADID_set_pointer(CRYPTO_THREADID *id, void *ptr); int CRYPTO_THREADID_set_callback(void (*threadid_func)(CRYPTO_THREADID *)); void (*CRYPTO_THREADID_get_callback(void))(CRYPTO_THREADID *); void CRYPTO_THREADID_current(CRYPTO_THREADID *id); int CRYPTO_THREADID_cmp(const CRYPTO_THREADID *a, const CRYPTO_THREADID *b); void CRYPTO_THREADID_cpy(CRYPTO_THREADID *dest, const CRYPTO_THREADID *src); unsigned long CRYPTO_THREADID_hash(const CRYPTO_THREADID *id); void CRYPTO_set_id_callback(unsigned long (*func)(void)); unsigned long (*CRYPTO_get_id_callback(void))(void); unsigned long CRYPTO_thread_id(void); const char *CRYPTO_get_lock_name(int type); int CRYPTO_add_lock(int *pointer,int amount,int type, const char *file, int line); int CRYPTO_get_new_dynlockid(void); void CRYPTO_destroy_dynlockid(int i); struct CRYPTO_dynlock_value *CRYPTO_get_dynlock_value(int i); void CRYPTO_set_dynlock_create_callback(struct CRYPTO_dynlock_value *(*dyn_create_function)(const char *file, int line)); void CRYPTO_set_dynlock_lock_callback(void (*dyn_lock_function)(int mode, struct CRYPTO_dynlock_value *l, const char *file, int line)); void CRYPTO_set_dynlock_destroy_callback(void (*dyn_destroy_function)(struct CRYPTO_dynlock_value *l, const char *file, int line)); struct CRYPTO_dynlock_value *(*CRYPTO_get_dynlock_create_callback(void))(const char *file,int line); void (*CRYPTO_get_dynlock_lock_callback(void))(int mode, struct CRYPTO_dynlock_value *l, const char *file,int line); void (*CRYPTO_get_dynlock_destroy_callback(void))(struct CRYPTO_dynlock_value *l, const char *file,int line); int CRYPTO_set_mem_functions(void *(*m)(size_t),void *(*r)(void *,size_t), void (*f)(void *)); int CRYPTO_set_locked_mem_functions(void *(*m)(size_t), void (*free_func)(void *)); int CRYPTO_set_mem_ex_functions(void *(*m)(size_t,const char *,int), void *(*r)(void *,size_t,const char *,int), void (*f)(void *)); int CRYPTO_set_locked_mem_ex_functions(void *(*m)(size_t,const char *,int), void (*free_func)(void *)); int CRYPTO_set_mem_debug_functions(void (*m)(void *,int,const char *,int,int), void (*r)(void *,void *,int,const char *,int,int), void (*f)(void *,int), void (*so)(long), long (*go)(void)); void CRYPTO_get_mem_functions(void *(**m)(size_t),void *(**r)(void *, size_t), void (**f)(void *)); void CRYPTO_get_locked_mem_functions(void *(**m)(size_t), void (**f)(void *)); void CRYPTO_get_mem_ex_functions(void *(**m)(size_t,const char *,int), void *(**r)(void *, size_t,const char *,int), void (**f)(void *)); void CRYPTO_get_locked_mem_ex_functions(void *(**m)(size_t,const char *,int), void (**f)(void *)); void CRYPTO_get_mem_debug_functions(void (**m)(void *,int,const char *,int,int), void (**r)(void *,void *,int,const char *,int,int), void (**f)(void *,int), void (**so)(long), long (**go)(void)); void *CRYPTO_malloc_locked(int num, const char *file, int line); void CRYPTO_free_locked(void *); void *CRYPTO_malloc(int num, const char *file, int line); char *CRYPTO_strdup(const char *str, const char *file, int line); void CRYPTO_free(void *); void *CRYPTO_realloc(void *addr,int num, const char *file, int line); void *CRYPTO_realloc_clean(void *addr,int old_num,int num,const char *file, int line); void *CRYPTO_remalloc(void *addr,int num, const char *file, int line); void OPENSSL_cleanse(void *ptr, size_t len); void CRYPTO_set_mem_debug_options(long bits); long CRYPTO_get_mem_debug_options(void); int CRYPTO_push_info_(const char *info, const char *file, int line); int CRYPTO_pop_info(void); int CRYPTO_remove_all_info(void); # 519 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_dbg_malloc(void *addr,int num,const char *file,int line,int before_p); void CRYPTO_dbg_realloc(void *addr1,void *addr2,int num,const char *file,int line,int before_p); void CRYPTO_dbg_free(void *addr,int before_p); # 530 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_dbg_set_options(long bits); long CRYPTO_dbg_get_options(void); void CRYPTO_mem_leaks_fp(FILE *); void CRYPTO_mem_leaks(struct bio_st *bio); typedef void *CRYPTO_MEM_LEAK_CB(unsigned long, const char *, int, int, void *); void CRYPTO_mem_leaks_cb(CRYPTO_MEM_LEAK_CB *cb); void OpenSSLDie(const char *file,int line,const char *assertion); unsigned long *OPENSSL_ia32cap_loc(void); int OPENSSL_isservice(void); # 609 "/usr/include/openssl/crypto.h" 3 4 void ERR_load_CRYPTO_strings(void); void OPENSSL_init_library(void); # 6 "/usr/include/openssl/comp.h" 2 3 4 typedef struct comp_ctx_st COMP_CTX; typedef struct comp_method_st { int type; const char *name; int (*init)(COMP_CTX *ctx); void (*finish)(COMP_CTX *ctx); int (*compress)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen); int (*expand)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen); long (*ctrl)(void); long (*callback_ctrl)(void); } COMP_METHOD; struct comp_ctx_st { COMP_METHOD *meth; unsigned long compress_in; unsigned long compress_out; unsigned long expand_in; unsigned long expand_out; CRYPTO_EX_DATA ex_data; }; COMP_CTX *COMP_CTX_new(COMP_METHOD *meth); void COMP_CTX_free(COMP_CTX *ctx); int COMP_compress_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen); int COMP_expand_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen); COMP_METHOD *COMP_rle(void ); COMP_METHOD *COMP_zlib(void ); void COMP_zlib_cleanup(void); # 62 "/usr/include/openssl/comp.h" 3 4 void ERR_load_COMP_strings(void); # 150 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/bio.h" 1 3 4 # 62 "/usr/include/openssl/bio.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/bio.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdarg.h" 1 3 4 # 68 "/usr/include/openssl/bio.h" 2 3 4 # 204 "/usr/include/openssl/bio.h" 3 4 typedef struct bio_st BIO; void BIO_set_flags(BIO *b, int flags); int BIO_test_flags(const BIO *b, int flags); void BIO_clear_flags(BIO *b, int flags); # 258 "/usr/include/openssl/bio.h" 3 4 long (*BIO_get_callback(const BIO *b)) (struct bio_st *,int,const char *,int, long,long); void BIO_set_callback(BIO *b, long (*callback)(struct bio_st *,int,const char *,int, long,long)); char *BIO_get_callback_arg(const BIO *b); void BIO_set_callback_arg(BIO *b, char *arg); const char * BIO_method_name(const BIO *b); int BIO_method_type(const BIO *b); typedef void bio_info_cb(struct bio_st *, int, const char *, int, long, long); typedef struct bio_method_st { int type; const char *name; int (*bwrite)(BIO *, const char *, int); int (*bread)(BIO *, char *, int); int (*bputs)(BIO *, const char *); int (*bgets)(BIO *, char *, int); long (*ctrl)(BIO *, int, long, void *); int (*create)(BIO *); int (*destroy)(BIO *); long (*callback_ctrl)(BIO *, int, bio_info_cb *); } BIO_METHOD; struct bio_st { BIO_METHOD *method; long (*callback)(struct bio_st *,int,const char *,int, long,long); char *cb_arg; int init; int shutdown; int flags; int retry_reason; int num; void *ptr; struct bio_st *next_bio; struct bio_st *prev_bio; int references; unsigned long num_read; unsigned long num_write; CRYPTO_EX_DATA ex_data; }; struct stack_st_BIO { _STACK stack; }; typedef struct bio_f_buffer_ctx_struct { int ibuf_size; int obuf_size; char *ibuf; int ibuf_len; int ibuf_off; char *obuf; int obuf_len; int obuf_off; } BIO_F_BUFFER_CTX; typedef int asn1_ps_func(BIO *b, unsigned char **pbuf, int *plen, void *parg); # 510 "/usr/include/openssl/bio.h" 3 4 size_t BIO_ctrl_pending(BIO *b); size_t BIO_ctrl_wpending(BIO *b); # 529 "/usr/include/openssl/bio.h" 3 4 size_t BIO_ctrl_get_write_guarantee(BIO *b); size_t BIO_ctrl_get_read_request(BIO *b); int BIO_ctrl_reset_read_request(BIO *b); # 550 "/usr/include/openssl/bio.h" 3 4 int BIO_set_ex_data(BIO *bio,int idx,void *data); void *BIO_get_ex_data(BIO *bio,int idx); int BIO_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); unsigned long BIO_number_read(BIO *bio); unsigned long BIO_number_written(BIO *bio); int BIO_asn1_set_prefix(BIO *b, asn1_ps_func *prefix, asn1_ps_func *prefix_free); int BIO_asn1_get_prefix(BIO *b, asn1_ps_func **pprefix, asn1_ps_func **pprefix_free); int BIO_asn1_set_suffix(BIO *b, asn1_ps_func *suffix, asn1_ps_func *suffix_free); int BIO_asn1_get_suffix(BIO *b, asn1_ps_func **psuffix, asn1_ps_func **psuffix_free); BIO_METHOD *BIO_s_file(void ); BIO *BIO_new_file(const char *filename, const char *mode); BIO *BIO_new_fp(FILE *stream, int close_flag); BIO * BIO_new(BIO_METHOD *type); int BIO_set(BIO *a,BIO_METHOD *type); int BIO_free(BIO *a); void BIO_vfree(BIO *a); int BIO_read(BIO *b, void *data, int len); int BIO_gets(BIO *bp,char *buf, int size); int BIO_write(BIO *b, const void *data, int len); int BIO_puts(BIO *bp,const char *buf); int BIO_indent(BIO *b,int indent,int max); long BIO_ctrl(BIO *bp,int cmd,long larg,void *parg); long BIO_callback_ctrl(BIO *b, int cmd, void (*fp)(struct bio_st *, int, const char *, int, long, long)); char * BIO_ptr_ctrl(BIO *bp,int cmd,long larg); long BIO_int_ctrl(BIO *bp,int cmd,long larg,int iarg); BIO * BIO_push(BIO *b,BIO *append); BIO * BIO_pop(BIO *b); void BIO_free_all(BIO *a); BIO * BIO_find_type(BIO *b,int bio_type); BIO * BIO_next(BIO *b); BIO * BIO_get_retry_BIO(BIO *bio, int *reason); int BIO_get_retry_reason(BIO *bio); BIO * BIO_dup_chain(BIO *in); int BIO_nread0(BIO *bio, char **buf); int BIO_nread(BIO *bio, char **buf, int num); int BIO_nwrite0(BIO *bio, char **buf); int BIO_nwrite(BIO *bio, char **buf, int num); long BIO_debug_callback(BIO *bio,int cmd,const char *argp,int argi, long argl,long ret); BIO_METHOD *BIO_s_mem(void); BIO *BIO_new_mem_buf(void *buf, int len); BIO_METHOD *BIO_s_socket(void); BIO_METHOD *BIO_s_connect(void); BIO_METHOD *BIO_s_accept(void); BIO_METHOD *BIO_s_fd(void); BIO_METHOD *BIO_s_log(void); BIO_METHOD *BIO_s_bio(void); BIO_METHOD *BIO_s_null(void); BIO_METHOD *BIO_f_null(void); BIO_METHOD *BIO_f_buffer(void); BIO_METHOD *BIO_f_nbio_test(void); BIO_METHOD *BIO_s_datagram(void); int BIO_sock_should_retry(int i); int BIO_sock_non_fatal_error(int error); int BIO_dgram_non_fatal_error(int error); int BIO_fd_should_retry(int i); int BIO_fd_non_fatal_error(int error); int BIO_dump_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len); int BIO_dump_indent_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len, int indent); int BIO_dump(BIO *b,const char *bytes,int len); int BIO_dump_indent(BIO *b,const char *bytes,int len,int indent); int BIO_dump_fp(FILE *fp, const char *s, int len); int BIO_dump_indent_fp(FILE *fp, const char *s, int len, int indent); struct hostent *BIO_gethostbyname(const char *name); # 651 "/usr/include/openssl/bio.h" 3 4 int BIO_sock_error(int sock); int BIO_socket_ioctl(int fd, long type, void *arg); int BIO_socket_nbio(int fd,int mode); int BIO_get_port(const char *str, unsigned short *port_ptr); int BIO_get_host_ip(const char *str, unsigned char *ip); int BIO_get_accept_socket(char *host_port,int mode); int BIO_accept(int sock,char **ip_port); int BIO_sock_init(void ); void BIO_sock_cleanup(void); int BIO_set_tcp_ndelay(int sock,int turn_on); BIO *BIO_new_socket(int sock, int close_flag); BIO *BIO_new_dgram(int fd, int close_flag); BIO *BIO_new_fd(int fd, int close_flag); BIO *BIO_new_connect(char *host_port); BIO *BIO_new_accept(char *host_port); int BIO_new_bio_pair(BIO **bio1, size_t writebuf1, BIO **bio2, size_t writebuf2); void BIO_copy_next_retry(BIO *b); # 684 "/usr/include/openssl/bio.h" 3 4 int BIO_printf(BIO *bio, const char *format, ...) __attribute__((__format__(__printf__,2,3))); int BIO_vprintf(BIO *bio, const char *format, va_list args) __attribute__((__format__(__printf__,2,0))); int BIO_snprintf(char *buf, size_t n, const char *format, ...) __attribute__((__format__(__printf__,3,4))); int BIO_vsnprintf(char *buf, size_t n, const char *format, va_list args) __attribute__((__format__(__printf__,3,0))); void ERR_load_BIO_strings(void); # 153 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/x509.h" 1 3 4 # 67 "/usr/include/openssl/x509.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 68 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/buffer.h" 1 3 4 # 68 "/usr/include/openssl/buffer.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 147 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 69 "/usr/include/openssl/buffer.h" 2 3 4 # 77 "/usr/include/openssl/buffer.h" 3 4 struct buf_mem_st { size_t length; char *data; size_t max; }; BUF_MEM *BUF_MEM_new(void); void BUF_MEM_free(BUF_MEM *a); int BUF_MEM_grow(BUF_MEM *str, size_t len); int BUF_MEM_grow_clean(BUF_MEM *str, size_t len); char * BUF_strdup(const char *str); char * BUF_strndup(const char *str, size_t siz); void * BUF_memdup(const void *data, size_t siz); void BUF_reverse(unsigned char *out, unsigned char *in, size_t siz); size_t BUF_strlcpy(char *dst,const char *src,size_t siz); size_t BUF_strlcat(char *dst,const char *src,size_t siz); void ERR_load_BUF_strings(void); # 71 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/evp.h" 1 3 4 # 66 "/usr/include/openssl/evp.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 67 "/usr/include/openssl/evp.h" 2 3 4 # 79 "/usr/include/openssl/evp.h" 3 4 # 1 "/usr/include/openssl/fips.h" 1 3 4 # 50 "/usr/include/openssl/fips.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 51 "/usr/include/openssl/fips.h" 2 3 4 # 62 "/usr/include/openssl/fips.h" 3 4 struct dsa_st; struct evp_pkey_st; struct env_md_st; struct evp_cipher_st; struct evp_cipher_ctx_st; int FIPS_mode_set(int onoff); int FIPS_mode(void); const void *FIPS_rand_check(void); int FIPS_selftest_failed(void); void FIPS_selftest_check(void); void FIPS_corrupt_sha1(void); int FIPS_selftest_sha1(void); int FIPS_selftest_sha2(void); void FIPS_corrupt_aes(void); int FIPS_selftest_aes(void); void FIPS_corrupt_des(void); int FIPS_selftest_des(void); void FIPS_corrupt_rsa(void); void FIPS_corrupt_rsa_keygen(void); int FIPS_selftest_rsa(void); void FIPS_corrupt_dsa(void); void FIPS_corrupt_dsa_keygen(void); int FIPS_selftest_dsa(void); void FIPS_corrupt_rng(void); void FIPS_rng_stick(void); int FIPS_selftest_rng(void); int FIPS_selftest_hmac(void); int fips_pkey_signature_test(struct evp_pkey_st *pkey, const unsigned char *tbs, int tbslen, const unsigned char *kat, unsigned int katlen, const struct env_md_st *digest, unsigned int md_flags, const char *fail_str); int fips_cipher_test(struct evp_cipher_ctx_st *ctx, const struct evp_cipher_st *cipher, const unsigned char *key, const unsigned char *iv, const unsigned char *plaintext, const unsigned char *ciphertext, int len); void ERR_load_FIPS_strings(void); # 80 "/usr/include/openssl/evp.h" 2 3 4 # 98 "/usr/include/openssl/evp.h" 3 4 # 1 "/usr/include/openssl/objects.h" 1 3 4 # 65 "/usr/include/openssl/objects.h" 3 4 # 1 "/usr/include/openssl/obj_mac.h" 1 3 4 # 66 "/usr/include/openssl/objects.h" 2 3 4 # 960 "/usr/include/openssl/objects.h" 3 4 # 1 "/usr/include/openssl/asn1.h" 1 3 4 # 62 "/usr/include/openssl/asn1.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 30 "/usr/include/time.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 417 "/usr/include/time.h" 3 4 # 63 "/usr/include/openssl/asn1.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 64 "/usr/include/openssl/asn1.h" 2 3 4 # 74 "/usr/include/openssl/asn1.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/openssl/bn.h" 1 3 4 # 137 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/openssl/bn.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 138 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/openssl/bn.h" 2 3 4 # 309 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/openssl/bn.h" 3 4 struct bignum_st { unsigned long *d; int top; int dmax; int neg; int flags; }; struct bn_mont_ctx_st { int ri; BIGNUM RR; BIGNUM N; BIGNUM Ni; unsigned long n0[2]; int flags; }; struct bn_recp_ctx_st { BIGNUM N; BIGNUM Nr; int num_bits; int shift; int flags; }; struct bn_gencb_st { unsigned int ver; void *arg; union { void (*cb_1)(int, int, void *); int (*cb_2)(int, int, BN_GENCB *); } cb; }; int BN_GENCB_call(BN_GENCB *cb, int a, int b); # 416 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/openssl/bn.h" 3 4 const BIGNUM *BN_value_one(void); char * BN_options(void); BN_CTX *BN_CTX_new(void); void BN_CTX_init(BN_CTX *c); void BN_CTX_free(BN_CTX *c); void BN_CTX_start(BN_CTX *ctx); BIGNUM *BN_CTX_get(BN_CTX *ctx); void BN_CTX_end(BN_CTX *ctx); int BN_rand(BIGNUM *rnd, int bits, int top,int bottom); int BN_pseudo_rand(BIGNUM *rnd, int bits, int top,int bottom); int BN_rand_range(BIGNUM *rnd, const BIGNUM *range); int BN_pseudo_rand_range(BIGNUM *rnd, const BIGNUM *range); int BN_num_bits(const BIGNUM *a); int BN_num_bits_word(unsigned long); BIGNUM *BN_new(void); void BN_init(BIGNUM *); void BN_clear_free(BIGNUM *a); BIGNUM *BN_copy(BIGNUM *a, const BIGNUM *b); void BN_swap(BIGNUM *a, BIGNUM *b); BIGNUM *BN_bin2bn(const unsigned char *s,int len,BIGNUM *ret); int BN_bn2bin(const BIGNUM *a, unsigned char *to); BIGNUM *BN_mpi2bn(const unsigned char *s,int len,BIGNUM *ret); int BN_bn2mpi(const BIGNUM *a, unsigned char *to); int BN_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_usub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_uadd(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); int BN_sqr(BIGNUM *r, const BIGNUM *a,BN_CTX *ctx); void BN_set_negative(BIGNUM *b, int n); int BN_div(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx); int BN_nnmod(BIGNUM *r, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx); int BN_mod_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_add_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m); int BN_mod_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_sub_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m); int BN_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift1(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift1_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *m); int BN_mod_lshift(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift_quick(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m); unsigned long BN_mod_word(const BIGNUM *a, unsigned long w); unsigned long BN_div_word(BIGNUM *a, unsigned long w); int BN_mul_word(BIGNUM *a, unsigned long w); int BN_add_word(BIGNUM *a, unsigned long w); int BN_sub_word(BIGNUM *a, unsigned long w); int BN_set_word(BIGNUM *a, unsigned long w); unsigned long BN_get_word(const BIGNUM *a); int BN_cmp(const BIGNUM *a, const BIGNUM *b); void BN_free(BIGNUM *a); int BN_is_bit_set(const BIGNUM *a, int n); int BN_lshift(BIGNUM *r, const BIGNUM *a, int n); int BN_lshift1(BIGNUM *r, const BIGNUM *a); int BN_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p,BN_CTX *ctx); int BN_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx); int BN_mod_exp_mont(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int BN_mod_exp_mont_consttime(BIGNUM *rr, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont); int BN_mod_exp_mont_word(BIGNUM *r, unsigned long a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int BN_mod_exp2_mont(BIGNUM *r, const BIGNUM *a1, const BIGNUM *p1, const BIGNUM *a2, const BIGNUM *p2,const BIGNUM *m, BN_CTX *ctx,BN_MONT_CTX *m_ctx); int BN_mod_exp_simple(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx); int BN_mask_bits(BIGNUM *a,int n); int BN_print_fp(FILE *fp, const BIGNUM *a); int BN_print(BIO *fp, const BIGNUM *a); int BN_reciprocal(BIGNUM *r, const BIGNUM *m, int len, BN_CTX *ctx); int BN_rshift(BIGNUM *r, const BIGNUM *a, int n); int BN_rshift1(BIGNUM *r, const BIGNUM *a); void BN_clear(BIGNUM *a); BIGNUM *BN_dup(const BIGNUM *a); int BN_ucmp(const BIGNUM *a, const BIGNUM *b); int BN_set_bit(BIGNUM *a, int n); int BN_clear_bit(BIGNUM *a, int n); char * BN_bn2hex(const BIGNUM *a); char * BN_bn2dec(const BIGNUM *a); int BN_hex2bn(BIGNUM **a, const char *str); int BN_dec2bn(BIGNUM **a, const char *str); int BN_asc2bn(BIGNUM **a, const char *str); int BN_gcd(BIGNUM *r,const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx); int BN_kronecker(const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx); BIGNUM *BN_mod_inverse(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx); BIGNUM *BN_mod_sqrt(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx); BIGNUM *BN_generate_prime(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, void (*callback)(int,int,void *),void *cb_arg); int BN_is_prime(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *), BN_CTX *ctx,void *cb_arg); int BN_is_prime_fasttest(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *),BN_CTX *ctx,void *cb_arg, int do_trial_division); int BN_generate_prime_ex(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, BN_GENCB *cb); int BN_is_prime_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, BN_GENCB *cb); int BN_is_prime_fasttest_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, int do_trial_division, BN_GENCB *cb); int BN_X931_generate_Xpq(BIGNUM *Xp, BIGNUM *Xq, int nbits, BN_CTX *ctx); int BN_X931_derive_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, const BIGNUM *Xp, const BIGNUM *Xp1, const BIGNUM *Xp2, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb); int BN_X931_generate_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, BIGNUM *Xp1, BIGNUM *Xp2, const BIGNUM *Xp, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb); BN_MONT_CTX *BN_MONT_CTX_new(void ); void BN_MONT_CTX_init(BN_MONT_CTX *ctx); int BN_mod_mul_montgomery(BIGNUM *r,const BIGNUM *a,const BIGNUM *b, BN_MONT_CTX *mont, BN_CTX *ctx); int BN_from_montgomery(BIGNUM *r,const BIGNUM *a, BN_MONT_CTX *mont, BN_CTX *ctx); void BN_MONT_CTX_free(BN_MONT_CTX *mont); int BN_MONT_CTX_set(BN_MONT_CTX *mont,const BIGNUM *mod,BN_CTX *ctx); BN_MONT_CTX *BN_MONT_CTX_copy(BN_MONT_CTX *to,BN_MONT_CTX *from); BN_MONT_CTX *BN_MONT_CTX_set_locked(BN_MONT_CTX **pmont, int lock, const BIGNUM *mod, BN_CTX *ctx); BN_BLINDING *BN_BLINDING_new(const BIGNUM *A, const BIGNUM *Ai, BIGNUM *mod); void BN_BLINDING_free(BN_BLINDING *b); int BN_BLINDING_update(BN_BLINDING *b,BN_CTX *ctx); int BN_BLINDING_convert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx); int BN_BLINDING_invert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx); int BN_BLINDING_convert_ex(BIGNUM *n, BIGNUM *r, BN_BLINDING *b, BN_CTX *); int BN_BLINDING_invert_ex(BIGNUM *n, const BIGNUM *r, BN_BLINDING *b, BN_CTX *); unsigned long BN_BLINDING_get_thread_id(const BN_BLINDING *); void BN_BLINDING_set_thread_id(BN_BLINDING *, unsigned long); CRYPTO_THREADID *BN_BLINDING_thread_id(BN_BLINDING *); unsigned long BN_BLINDING_get_flags(const BN_BLINDING *); void BN_BLINDING_set_flags(BN_BLINDING *, unsigned long); BN_BLINDING *BN_BLINDING_create_param(BN_BLINDING *b, const BIGNUM *e, BIGNUM *m, BN_CTX *ctx, int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx), BN_MONT_CTX *m_ctx); void BN_set_params(int mul,int high,int low,int mont); int BN_get_params(int which); void BN_RECP_CTX_init(BN_RECP_CTX *recp); BN_RECP_CTX *BN_RECP_CTX_new(void); void BN_RECP_CTX_free(BN_RECP_CTX *recp); int BN_RECP_CTX_set(BN_RECP_CTX *recp,const BIGNUM *rdiv,BN_CTX *ctx); int BN_mod_mul_reciprocal(BIGNUM *r, const BIGNUM *x, const BIGNUM *y, BN_RECP_CTX *recp,BN_CTX *ctx); int BN_mod_exp_recp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx); int BN_div_recp(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, BN_RECP_CTX *recp, BN_CTX *ctx); # 626 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/openssl/bn.h" 3 4 int BN_GF2m_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_GF2m_mod(BIGNUM *r, const BIGNUM *a, const BIGNUM *p); int BN_GF2m_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_inv(BIGNUM *r, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_div(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_sqrt(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_solve_quad(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_arr(BIGNUM *r, const BIGNUM *a, const int p[]); int BN_GF2m_mod_mul_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_sqr_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_mod_inv_arr(BIGNUM *r, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_div_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_exp_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_sqrt_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_mod_solve_quad_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_poly2arr(const BIGNUM *a, int p[], int max); int BN_GF2m_arr2poly(const int p[], BIGNUM *a); int BN_nist_mod_192(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_224(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_256(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_384(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_521(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); const BIGNUM *BN_get0_nist_prime_192(void); const BIGNUM *BN_get0_nist_prime_224(void); const BIGNUM *BN_get0_nist_prime_256(void); const BIGNUM *BN_get0_nist_prime_384(void); const BIGNUM *BN_get0_nist_prime_521(void); BIGNUM *bn_expand2(BIGNUM *a, int words); BIGNUM *bn_dup_expand(const BIGNUM *a, int words); # 785 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/openssl/bn.h" 3 4 unsigned long bn_mul_add_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w); unsigned long bn_mul_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w); void bn_sqr_words(unsigned long *rp, const unsigned long *ap, int num); unsigned long bn_div_words(unsigned long h, unsigned long l, unsigned long d); unsigned long bn_add_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num); unsigned long bn_sub_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num); BIGNUM *get_rfc2409_prime_768(BIGNUM *bn); BIGNUM *get_rfc2409_prime_1024(BIGNUM *bn); BIGNUM *get_rfc3526_prime_1536(BIGNUM *bn); BIGNUM *get_rfc3526_prime_2048(BIGNUM *bn); BIGNUM *get_rfc3526_prime_3072(BIGNUM *bn); BIGNUM *get_rfc3526_prime_4096(BIGNUM *bn); BIGNUM *get_rfc3526_prime_6144(BIGNUM *bn); BIGNUM *get_rfc3526_prime_8192(BIGNUM *bn); int BN_bntest_rand(BIGNUM *rnd, int bits, int top,int bottom); void ERR_load_BN_strings(void); # 75 "/usr/include/openssl/asn1.h" 2 3 4 # 165 "/usr/include/openssl/asn1.h" 3 4 struct X509_algor_st; struct stack_st_X509_ALGOR { _STACK stack; }; # 175 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_ctx_st { unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; unsigned char *max; unsigned char *q; unsigned char **pp; int line; } ASN1_CTX; typedef struct asn1_const_ctx_st { const unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; const unsigned char *max; const unsigned char *q; const unsigned char **pp; int line; } ASN1_const_CTX; typedef struct asn1_object_st { const char *sn,*ln; int nid; int length; const unsigned char *data; int flags; } ASN1_OBJECT; # 238 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_string_st { int length; int type; unsigned char *data; long flags; } ASN1_STRING; typedef struct ASN1_ENCODING_st { unsigned char *enc; long len; int modified; } ASN1_ENCODING; # 271 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_string_table_st { int nid; long minsize; long maxsize; unsigned long mask; unsigned long flags; } ASN1_STRING_TABLE; struct stack_st_ASN1_STRING_TABLE { _STACK stack; }; # 295 "/usr/include/openssl/asn1.h" 3 4 typedef struct ASN1_TEMPLATE_st ASN1_TEMPLATE; typedef struct ASN1_ITEM_st ASN1_ITEM; typedef struct ASN1_TLC_st ASN1_TLC; typedef struct ASN1_VALUE_st ASN1_VALUE; # 363 "/usr/include/openssl/asn1.h" 3 4 typedef void *d2i_of_void(void **,const unsigned char **,long); typedef int i2d_of_void(void *,unsigned char **); # 403 "/usr/include/openssl/asn1.h" 3 4 typedef const ASN1_ITEM ASN1_ITEM_EXP; # 517 "/usr/include/openssl/asn1.h" 3 4 struct stack_st_ASN1_INTEGER { _STACK stack; }; struct stack_st_ASN1_GENERALSTRING { _STACK stack; }; typedef struct asn1_type_st { int type; union { char *ptr; ASN1_BOOLEAN boolean; ASN1_STRING * asn1_string; ASN1_OBJECT * object; ASN1_INTEGER * integer; ASN1_ENUMERATED * enumerated; ASN1_BIT_STRING * bit_string; ASN1_OCTET_STRING * octet_string; ASN1_PRINTABLESTRING * printablestring; ASN1_T61STRING * t61string; ASN1_IA5STRING * ia5string; ASN1_GENERALSTRING * generalstring; ASN1_BMPSTRING * bmpstring; ASN1_UNIVERSALSTRING * universalstring; ASN1_UTCTIME * utctime; ASN1_GENERALIZEDTIME * generalizedtime; ASN1_VISIBLESTRING * visiblestring; ASN1_UTF8STRING * utf8string; ASN1_STRING * set; ASN1_STRING * sequence; ASN1_VALUE * asn1_value; } value; } ASN1_TYPE; struct stack_st_ASN1_TYPE { _STACK stack; }; typedef struct stack_st_ASN1_TYPE ASN1_SEQUENCE_ANY; ASN1_SEQUENCE_ANY *d2i_ASN1_SEQUENCE_ANY(ASN1_SEQUENCE_ANY **a, const unsigned char **in, long len); int i2d_ASN1_SEQUENCE_ANY(const ASN1_SEQUENCE_ANY *a, unsigned char **out); extern const ASN1_ITEM ASN1_SEQUENCE_ANY_it; ASN1_SEQUENCE_ANY *d2i_ASN1_SET_ANY(ASN1_SEQUENCE_ANY **a, const unsigned char **in, long len); int i2d_ASN1_SET_ANY(const ASN1_SEQUENCE_ANY *a, unsigned char **out); extern const ASN1_ITEM ASN1_SET_ANY_it; typedef struct NETSCAPE_X509_st { ASN1_OCTET_STRING *header; X509 *cert; } NETSCAPE_X509; typedef struct BIT_STRING_BITNAME_st { int bitnum; const char *lname; const char *sname; } BIT_STRING_BITNAME; # 775 "/usr/include/openssl/asn1.h" 3 4 ASN1_TYPE *ASN1_TYPE_new(void); void ASN1_TYPE_free(ASN1_TYPE *a); ASN1_TYPE *d2i_ASN1_TYPE(ASN1_TYPE **a, const unsigned char **in, long len); int i2d_ASN1_TYPE(ASN1_TYPE *a, unsigned char **out); extern const ASN1_ITEM ASN1_ANY_it; int ASN1_TYPE_get(ASN1_TYPE *a); void ASN1_TYPE_set(ASN1_TYPE *a, int type, void *value); int ASN1_TYPE_set1(ASN1_TYPE *a, int type, const void *value); int ASN1_TYPE_cmp(ASN1_TYPE *a, ASN1_TYPE *b); ASN1_OBJECT * ASN1_OBJECT_new(void ); void ASN1_OBJECT_free(ASN1_OBJECT *a); int i2d_ASN1_OBJECT(ASN1_OBJECT *a,unsigned char **pp); ASN1_OBJECT * c2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length); ASN1_OBJECT * d2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length); extern const ASN1_ITEM ASN1_OBJECT_it; struct stack_st_ASN1_OBJECT { _STACK stack; }; ASN1_STRING * ASN1_STRING_new(void); void ASN1_STRING_free(ASN1_STRING *a); int ASN1_STRING_copy(ASN1_STRING *dst, const ASN1_STRING *str); ASN1_STRING * ASN1_STRING_dup(const ASN1_STRING *a); ASN1_STRING * ASN1_STRING_type_new(int type ); int ASN1_STRING_cmp(const ASN1_STRING *a, const ASN1_STRING *b); int ASN1_STRING_set(ASN1_STRING *str, const void *data, int len); void ASN1_STRING_set0(ASN1_STRING *str, void *data, int len); int ASN1_STRING_length(const ASN1_STRING *x); void ASN1_STRING_length_set(ASN1_STRING *x, int n); int ASN1_STRING_type(ASN1_STRING *x); unsigned char * ASN1_STRING_data(ASN1_STRING *x); ASN1_BIT_STRING *ASN1_BIT_STRING_new(void); void ASN1_BIT_STRING_free(ASN1_BIT_STRING *a); ASN1_BIT_STRING *d2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a, const unsigned char **in, long len); int i2d_ASN1_BIT_STRING(ASN1_BIT_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_BIT_STRING_it; int i2c_ASN1_BIT_STRING(ASN1_BIT_STRING *a,unsigned char **pp); ASN1_BIT_STRING *c2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a,const unsigned char **pp, long length); int ASN1_BIT_STRING_set(ASN1_BIT_STRING *a, unsigned char *d, int length ); int ASN1_BIT_STRING_set_bit(ASN1_BIT_STRING *a, int n, int value); int ASN1_BIT_STRING_get_bit(ASN1_BIT_STRING *a, int n); int ASN1_BIT_STRING_check(ASN1_BIT_STRING *a, unsigned char *flags, int flags_len); int ASN1_BIT_STRING_name_print(BIO *out, ASN1_BIT_STRING *bs, BIT_STRING_BITNAME *tbl, int indent); int ASN1_BIT_STRING_num_asc(char *name, BIT_STRING_BITNAME *tbl); int ASN1_BIT_STRING_set_asc(ASN1_BIT_STRING *bs, char *name, int value, BIT_STRING_BITNAME *tbl); int i2d_ASN1_BOOLEAN(int a,unsigned char **pp); int d2i_ASN1_BOOLEAN(int *a,const unsigned char **pp,long length); ASN1_INTEGER *ASN1_INTEGER_new(void); void ASN1_INTEGER_free(ASN1_INTEGER *a); ASN1_INTEGER *d2i_ASN1_INTEGER(ASN1_INTEGER **a, const unsigned char **in, long len); int i2d_ASN1_INTEGER(ASN1_INTEGER *a, unsigned char **out); extern const ASN1_ITEM ASN1_INTEGER_it; int i2c_ASN1_INTEGER(ASN1_INTEGER *a,unsigned char **pp); ASN1_INTEGER *c2i_ASN1_INTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length); ASN1_INTEGER *d2i_ASN1_UINTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length); ASN1_INTEGER * ASN1_INTEGER_dup(const ASN1_INTEGER *x); int ASN1_INTEGER_cmp(const ASN1_INTEGER *x, const ASN1_INTEGER *y); ASN1_ENUMERATED *ASN1_ENUMERATED_new(void); void ASN1_ENUMERATED_free(ASN1_ENUMERATED *a); ASN1_ENUMERATED *d2i_ASN1_ENUMERATED(ASN1_ENUMERATED **a, const unsigned char **in, long len); int i2d_ASN1_ENUMERATED(ASN1_ENUMERATED *a, unsigned char **out); extern const ASN1_ITEM ASN1_ENUMERATED_it; int ASN1_UTCTIME_check(ASN1_UTCTIME *a); ASN1_UTCTIME *ASN1_UTCTIME_set(ASN1_UTCTIME *s,time_t t); ASN1_UTCTIME *ASN1_UTCTIME_adj(ASN1_UTCTIME *s, time_t t, int offset_day, long offset_sec); int ASN1_UTCTIME_set_string(ASN1_UTCTIME *s, const char *str); int ASN1_UTCTIME_cmp_time_t(const ASN1_UTCTIME *s, time_t t); int ASN1_GENERALIZEDTIME_check(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_set(ASN1_GENERALIZEDTIME *s,time_t t); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_adj(ASN1_GENERALIZEDTIME *s, time_t t, int offset_day, long offset_sec); int ASN1_GENERALIZEDTIME_set_string(ASN1_GENERALIZEDTIME *s, const char *str); ASN1_OCTET_STRING *ASN1_OCTET_STRING_new(void); void ASN1_OCTET_STRING_free(ASN1_OCTET_STRING *a); ASN1_OCTET_STRING *d2i_ASN1_OCTET_STRING(ASN1_OCTET_STRING **a, const unsigned char **in, long len); int i2d_ASN1_OCTET_STRING(ASN1_OCTET_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_OCTET_STRING_it; ASN1_OCTET_STRING * ASN1_OCTET_STRING_dup(const ASN1_OCTET_STRING *a); int ASN1_OCTET_STRING_cmp(const ASN1_OCTET_STRING *a, const ASN1_OCTET_STRING *b); int ASN1_OCTET_STRING_set(ASN1_OCTET_STRING *str, const unsigned char *data, int len); ASN1_VISIBLESTRING *ASN1_VISIBLESTRING_new(void); void ASN1_VISIBLESTRING_free(ASN1_VISIBLESTRING *a); ASN1_VISIBLESTRING *d2i_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING **a, const unsigned char **in, long len); int i2d_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_VISIBLESTRING_it; ASN1_UNIVERSALSTRING *ASN1_UNIVERSALSTRING_new(void); void ASN1_UNIVERSALSTRING_free(ASN1_UNIVERSALSTRING *a); ASN1_UNIVERSALSTRING *d2i_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING **a, const unsigned char **in, long len); int i2d_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_UNIVERSALSTRING_it; ASN1_UTF8STRING *ASN1_UTF8STRING_new(void); void ASN1_UTF8STRING_free(ASN1_UTF8STRING *a); ASN1_UTF8STRING *d2i_ASN1_UTF8STRING(ASN1_UTF8STRING **a, const unsigned char **in, long len); int i2d_ASN1_UTF8STRING(ASN1_UTF8STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_UTF8STRING_it; ASN1_NULL *ASN1_NULL_new(void); void ASN1_NULL_free(ASN1_NULL *a); ASN1_NULL *d2i_ASN1_NULL(ASN1_NULL **a, const unsigned char **in, long len); int i2d_ASN1_NULL(ASN1_NULL *a, unsigned char **out); extern const ASN1_ITEM ASN1_NULL_it; ASN1_BMPSTRING *ASN1_BMPSTRING_new(void); void ASN1_BMPSTRING_free(ASN1_BMPSTRING *a); ASN1_BMPSTRING *d2i_ASN1_BMPSTRING(ASN1_BMPSTRING **a, const unsigned char **in, long len); int i2d_ASN1_BMPSTRING(ASN1_BMPSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_BMPSTRING_it; int UTF8_getc(const unsigned char *str, int len, unsigned long *val); int UTF8_putc(unsigned char *str, int len, unsigned long value); ASN1_STRING *ASN1_PRINTABLE_new(void); void ASN1_PRINTABLE_free(ASN1_STRING *a); ASN1_STRING *d2i_ASN1_PRINTABLE(ASN1_STRING **a, const unsigned char **in, long len); int i2d_ASN1_PRINTABLE(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_PRINTABLE_it; ASN1_STRING *DIRECTORYSTRING_new(void); void DIRECTORYSTRING_free(ASN1_STRING *a); ASN1_STRING *d2i_DIRECTORYSTRING(ASN1_STRING **a, const unsigned char **in, long len); int i2d_DIRECTORYSTRING(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM DIRECTORYSTRING_it; ASN1_STRING *DISPLAYTEXT_new(void); void DISPLAYTEXT_free(ASN1_STRING *a); ASN1_STRING *d2i_DISPLAYTEXT(ASN1_STRING **a, const unsigned char **in, long len); int i2d_DISPLAYTEXT(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM DISPLAYTEXT_it; ASN1_PRINTABLESTRING *ASN1_PRINTABLESTRING_new(void); void ASN1_PRINTABLESTRING_free(ASN1_PRINTABLESTRING *a); ASN1_PRINTABLESTRING *d2i_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING **a, const unsigned char **in, long len); int i2d_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_PRINTABLESTRING_it; ASN1_T61STRING *ASN1_T61STRING_new(void); void ASN1_T61STRING_free(ASN1_T61STRING *a); ASN1_T61STRING *d2i_ASN1_T61STRING(ASN1_T61STRING **a, const unsigned char **in, long len); int i2d_ASN1_T61STRING(ASN1_T61STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_T61STRING_it; ASN1_IA5STRING *ASN1_IA5STRING_new(void); void ASN1_IA5STRING_free(ASN1_IA5STRING *a); ASN1_IA5STRING *d2i_ASN1_IA5STRING(ASN1_IA5STRING **a, const unsigned char **in, long len); int i2d_ASN1_IA5STRING(ASN1_IA5STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_IA5STRING_it; ASN1_GENERALSTRING *ASN1_GENERALSTRING_new(void); void ASN1_GENERALSTRING_free(ASN1_GENERALSTRING *a); ASN1_GENERALSTRING *d2i_ASN1_GENERALSTRING(ASN1_GENERALSTRING **a, const unsigned char **in, long len); int i2d_ASN1_GENERALSTRING(ASN1_GENERALSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_GENERALSTRING_it; ASN1_UTCTIME *ASN1_UTCTIME_new(void); void ASN1_UTCTIME_free(ASN1_UTCTIME *a); ASN1_UTCTIME *d2i_ASN1_UTCTIME(ASN1_UTCTIME **a, const unsigned char **in, long len); int i2d_ASN1_UTCTIME(ASN1_UTCTIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_UTCTIME_it; ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_new(void); void ASN1_GENERALIZEDTIME_free(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *d2i_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME **a, const unsigned char **in, long len); int i2d_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_GENERALIZEDTIME_it; ASN1_TIME *ASN1_TIME_new(void); void ASN1_TIME_free(ASN1_TIME *a); ASN1_TIME *d2i_ASN1_TIME(ASN1_TIME **a, const unsigned char **in, long len); int i2d_ASN1_TIME(ASN1_TIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_TIME_it; extern const ASN1_ITEM ASN1_OCTET_STRING_NDEF_it; ASN1_TIME *ASN1_TIME_set(ASN1_TIME *s,time_t t); ASN1_TIME *ASN1_TIME_adj(ASN1_TIME *s,time_t t, int offset_day, long offset_sec); int ASN1_TIME_check(ASN1_TIME *t); ASN1_GENERALIZEDTIME *ASN1_TIME_to_generalizedtime(ASN1_TIME *t, ASN1_GENERALIZEDTIME **out); int ASN1_TIME_set_string(ASN1_TIME *s, const char *str); int i2d_ASN1_SET(struct stack_st_OPENSSL_BLOCK *a, unsigned char **pp, i2d_of_void *i2d, int ex_tag, int ex_class, int is_set); struct stack_st_OPENSSL_BLOCK *d2i_ASN1_SET(struct stack_st_OPENSSL_BLOCK **a, const unsigned char **pp, long length, d2i_of_void *d2i, void (*free_func)(OPENSSL_BLOCK), int ex_tag, int ex_class); int i2a_ASN1_INTEGER(BIO *bp, ASN1_INTEGER *a); int a2i_ASN1_INTEGER(BIO *bp,ASN1_INTEGER *bs,char *buf,int size); int i2a_ASN1_ENUMERATED(BIO *bp, ASN1_ENUMERATED *a); int a2i_ASN1_ENUMERATED(BIO *bp,ASN1_ENUMERATED *bs,char *buf,int size); int i2a_ASN1_OBJECT(BIO *bp,ASN1_OBJECT *a); int a2i_ASN1_STRING(BIO *bp,ASN1_STRING *bs,char *buf,int size); int i2a_ASN1_STRING(BIO *bp, ASN1_STRING *a, int type); int i2t_ASN1_OBJECT(char *buf,int buf_len,ASN1_OBJECT *a); int a2d_ASN1_OBJECT(unsigned char *out,int olen, const char *buf, int num); ASN1_OBJECT *ASN1_OBJECT_create(int nid, unsigned char *data,int len, const char *sn, const char *ln); int ASN1_INTEGER_set(ASN1_INTEGER *a, long v); long ASN1_INTEGER_get(const ASN1_INTEGER *a); ASN1_INTEGER *BN_to_ASN1_INTEGER(const BIGNUM *bn, ASN1_INTEGER *ai); BIGNUM *ASN1_INTEGER_to_BN(const ASN1_INTEGER *ai,BIGNUM *bn); int ASN1_ENUMERATED_set(ASN1_ENUMERATED *a, long v); long ASN1_ENUMERATED_get(ASN1_ENUMERATED *a); ASN1_ENUMERATED *BN_to_ASN1_ENUMERATED(BIGNUM *bn, ASN1_ENUMERATED *ai); BIGNUM *ASN1_ENUMERATED_to_BN(ASN1_ENUMERATED *ai,BIGNUM *bn); int ASN1_PRINTABLE_type(const unsigned char *s, int max); int i2d_ASN1_bytes(ASN1_STRING *a, unsigned char **pp, int tag, int xclass); ASN1_STRING *d2i_ASN1_bytes(ASN1_STRING **a, const unsigned char **pp, long length, int Ptag, int Pclass); unsigned long ASN1_tag2bit(int tag); ASN1_STRING *d2i_ASN1_type_bytes(ASN1_STRING **a,const unsigned char **pp, long length,int type); int asn1_Finish(ASN1_CTX *c); int asn1_const_Finish(ASN1_const_CTX *c); int ASN1_get_object(const unsigned char **pp, long *plength, int *ptag, int *pclass, long omax); int ASN1_check_infinite_end(unsigned char **p,long len); int ASN1_const_check_infinite_end(const unsigned char **p,long len); void ASN1_put_object(unsigned char **pp, int constructed, int length, int tag, int xclass); int ASN1_put_eoc(unsigned char **pp); int ASN1_object_size(int constructed, int length, int tag); void *ASN1_dup(i2d_of_void *i2d, d2i_of_void *d2i, void *x); # 967 "/usr/include/openssl/asn1.h" 3 4 void *ASN1_item_dup(const ASN1_ITEM *it, void *x); # 976 "/usr/include/openssl/asn1.h" 3 4 void *ASN1_d2i_fp(void *(*xnew)(void), d2i_of_void *d2i, FILE *in, void **x); void *ASN1_item_d2i_fp(const ASN1_ITEM *it, FILE *in, void *x); int ASN1_i2d_fp(i2d_of_void *i2d,FILE *out,void *x); # 997 "/usr/include/openssl/asn1.h" 3 4 int ASN1_item_i2d_fp(const ASN1_ITEM *it, FILE *out, void *x); int ASN1_STRING_print_ex_fp(FILE *fp, ASN1_STRING *str, unsigned long flags); int ASN1_STRING_to_UTF8(unsigned char **out, ASN1_STRING *in); void *ASN1_d2i_bio(void *(*xnew)(void), d2i_of_void *d2i, BIO *in, void **x); void *ASN1_item_d2i_bio(const ASN1_ITEM *it, BIO *in, void *x); int ASN1_i2d_bio(i2d_of_void *i2d,BIO *out, unsigned char *x); # 1025 "/usr/include/openssl/asn1.h" 3 4 int ASN1_item_i2d_bio(const ASN1_ITEM *it, BIO *out, void *x); int ASN1_UTCTIME_print(BIO *fp, const ASN1_UTCTIME *a); int ASN1_GENERALIZEDTIME_print(BIO *fp, const ASN1_GENERALIZEDTIME *a); int ASN1_TIME_print(BIO *fp, const ASN1_TIME *a); int ASN1_STRING_print(BIO *bp, const ASN1_STRING *v); int ASN1_STRING_print_ex(BIO *out, ASN1_STRING *str, unsigned long flags); int ASN1_bn_print(BIO *bp, const char *number, const BIGNUM *num, unsigned char *buf, int off); int ASN1_parse(BIO *bp,const unsigned char *pp,long len,int indent); int ASN1_parse_dump(BIO *bp,const unsigned char *pp,long len,int indent,int dump); const char *ASN1_tag2str(int tag); NETSCAPE_X509 *NETSCAPE_X509_new(void); void NETSCAPE_X509_free(NETSCAPE_X509 *a); NETSCAPE_X509 *d2i_NETSCAPE_X509(NETSCAPE_X509 **a, const unsigned char **in, long len); int i2d_NETSCAPE_X509(NETSCAPE_X509 *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_X509_it; int ASN1_UNIVERSALSTRING_to_string(ASN1_UNIVERSALSTRING *s); int ASN1_TYPE_set_octetstring(ASN1_TYPE *a, unsigned char *data, int len); int ASN1_TYPE_get_octetstring(ASN1_TYPE *a, unsigned char *data, int max_len); int ASN1_TYPE_set_int_octetstring(ASN1_TYPE *a, long num, unsigned char *data, int len); int ASN1_TYPE_get_int_octetstring(ASN1_TYPE *a,long *num, unsigned char *data, int max_len); struct stack_st_OPENSSL_BLOCK *ASN1_seq_unpack(const unsigned char *buf, int len, d2i_of_void *d2i, void (*free_func)(OPENSSL_BLOCK)); unsigned char *ASN1_seq_pack(struct stack_st_OPENSSL_BLOCK *safes, i2d_of_void *i2d, unsigned char **buf, int *len ); void *ASN1_unpack_string(ASN1_STRING *oct, d2i_of_void *d2i); void *ASN1_item_unpack(ASN1_STRING *oct, const ASN1_ITEM *it); ASN1_STRING *ASN1_pack_string(void *obj, i2d_of_void *i2d, ASN1_OCTET_STRING **oct); ASN1_STRING *ASN1_item_pack(void *obj, const ASN1_ITEM *it, ASN1_OCTET_STRING **oct); void ASN1_STRING_set_default_mask(unsigned long mask); int ASN1_STRING_set_default_mask_asc(char *p); unsigned long ASN1_STRING_get_default_mask(void); int ASN1_mbstring_copy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask); int ASN1_mbstring_ncopy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask, long minsize, long maxsize); ASN1_STRING *ASN1_STRING_set_by_NID(ASN1_STRING **out, const unsigned char *in, int inlen, int inform, int nid); ASN1_STRING_TABLE *ASN1_STRING_TABLE_get(int nid); int ASN1_STRING_TABLE_add(int, long, long, unsigned long, unsigned long); void ASN1_STRING_TABLE_cleanup(void); ASN1_VALUE *ASN1_item_new(const ASN1_ITEM *it); void ASN1_item_free(ASN1_VALUE *val, const ASN1_ITEM *it); ASN1_VALUE * ASN1_item_d2i(ASN1_VALUE **val, const unsigned char **in, long len, const ASN1_ITEM *it); int ASN1_item_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it); int ASN1_item_ndef_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it); void ASN1_add_oid_module(void); ASN1_TYPE *ASN1_generate_nconf(char *str, CONF *nconf); ASN1_TYPE *ASN1_generate_v3(char *str, X509V3_CTX *cnf); # 1119 "/usr/include/openssl/asn1.h" 3 4 int ASN1_item_print(BIO *out, ASN1_VALUE *ifld, int indent, const ASN1_ITEM *it, const ASN1_PCTX *pctx); ASN1_PCTX *ASN1_PCTX_new(void); void ASN1_PCTX_free(ASN1_PCTX *p); unsigned long ASN1_PCTX_get_flags(ASN1_PCTX *p); void ASN1_PCTX_set_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_nm_flags(ASN1_PCTX *p); void ASN1_PCTX_set_nm_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_cert_flags(ASN1_PCTX *p); void ASN1_PCTX_set_cert_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_oid_flags(ASN1_PCTX *p); void ASN1_PCTX_set_oid_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_str_flags(ASN1_PCTX *p); void ASN1_PCTX_set_str_flags(ASN1_PCTX *p, unsigned long flags); BIO_METHOD *BIO_f_asn1(void); BIO *BIO_new_NDEF(BIO *out, ASN1_VALUE *val, const ASN1_ITEM *it); int i2d_ASN1_bio_stream(BIO *out, ASN1_VALUE *val, BIO *in, int flags, const ASN1_ITEM *it); int PEM_write_bio_ASN1_stream(BIO *out, ASN1_VALUE *val, BIO *in, int flags, const char *hdr, const ASN1_ITEM *it); int SMIME_write_ASN1(BIO *bio, ASN1_VALUE *val, BIO *data, int flags, int ctype_nid, int econt_nid, struct stack_st_X509_ALGOR *mdalgs, const ASN1_ITEM *it); ASN1_VALUE *SMIME_read_ASN1(BIO *bio, BIO **bcont, const ASN1_ITEM *it); int SMIME_crlf_copy(BIO *in, BIO *out, int flags); int SMIME_text(BIO *in, BIO *out); void ERR_load_ASN1_strings(void); # 961 "/usr/include/openssl/objects.h" 2 3 4 # 979 "/usr/include/openssl/objects.h" 3 4 typedef struct obj_name_st { int type; int alias; const char *name; const char *data; } OBJ_NAME; int OBJ_NAME_init(void); int OBJ_NAME_new_index(unsigned long (*hash_func)(const char *), int (*cmp_func)(const char *, const char *), void (*free_func)(const char *, int, const char *)); const char *OBJ_NAME_get(const char *name,int type); int OBJ_NAME_add(const char *name,int type,const char *data); int OBJ_NAME_remove(const char *name,int type); void OBJ_NAME_cleanup(int type); void OBJ_NAME_do_all(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg); void OBJ_NAME_do_all_sorted(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg); ASN1_OBJECT * OBJ_dup(const ASN1_OBJECT *o); ASN1_OBJECT * OBJ_nid2obj(int n); const char * OBJ_nid2ln(int n); const char * OBJ_nid2sn(int n); int OBJ_obj2nid(const ASN1_OBJECT *o); ASN1_OBJECT * OBJ_txt2obj(const char *s, int no_name); int OBJ_obj2txt(char *buf, int buf_len, const ASN1_OBJECT *a, int no_name); int OBJ_txt2nid(const char *s); int OBJ_ln2nid(const char *s); int OBJ_sn2nid(const char *s); int OBJ_cmp(const ASN1_OBJECT *a,const ASN1_OBJECT *b); const void * OBJ_bsearch_(const void *key,const void *base,int num,int size, int (*cmp)(const void *, const void *)); const void * OBJ_bsearch_ex_(const void *key,const void *base,int num, int size, int (*cmp)(const void *, const void *), int flags); # 1100 "/usr/include/openssl/objects.h" 3 4 int OBJ_new_nid(int num); int OBJ_add_object(const ASN1_OBJECT *obj); int OBJ_create(const char *oid,const char *sn,const char *ln); void OBJ_cleanup(void ); int OBJ_create_objects(BIO *in); int OBJ_find_sigid_algs(int signid, int *pdig_nid, int *ppkey_nid); int OBJ_find_sigid_by_algs(int *psignid, int dig_nid, int pkey_nid); int OBJ_add_sigid(int signid, int dig_id, int pkey_id); void OBJ_sigid_free(void); extern int obj_cleanup_defer; void check_defer(int nid); void ERR_load_OBJ_strings(void); # 99 "/usr/include/openssl/evp.h" 2 3 4 # 131 "/usr/include/openssl/evp.h" 3 4 struct evp_pkey_st { int type; int save_type; int references; const EVP_PKEY_ASN1_METHOD *ameth; ENGINE *engine; union { char *ptr; struct rsa_st *rsa; struct dsa_st *dsa; struct dh_st *dh; } pkey; int save_parameters; struct stack_st_X509_ATTRIBUTE *attributes; } ; struct env_md_st { int type; int pkey_type; int md_size; unsigned long flags; int (*init)(EVP_MD_CTX *ctx); int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count); int (*final)(EVP_MD_CTX *ctx,unsigned char *md); int (*copy)(EVP_MD_CTX *to,const EVP_MD_CTX *from); int (*cleanup)(EVP_MD_CTX *ctx); int (*sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, void *key); int (*verify)(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, void *key); int required_pkey_type[5]; int block_size; int ctx_size; int (*md_ctrl)(EVP_MD_CTX *ctx, int cmd, int p1, void *p2); } ; typedef int evp_sign_method(int type,const unsigned char *m, unsigned int m_length,unsigned char *sigret, unsigned int *siglen, void *key); typedef int evp_verify_method(int type,const unsigned char *m, unsigned int m_length,const unsigned char *sigbuf, unsigned int siglen, void *key); # 258 "/usr/include/openssl/evp.h" 3 4 struct env_md_ctx_st { const EVP_MD *digest; ENGINE *engine; unsigned long flags; void *md_data; EVP_PKEY_CTX *pctx; int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count); } ; # 296 "/usr/include/openssl/evp.h" 3 4 struct evp_cipher_st { int nid; int block_size; int key_len; int iv_len; unsigned long flags; int (*init)(EVP_CIPHER_CTX *ctx, const unsigned char *key, const unsigned char *iv, int enc); int (*do_cipher)(EVP_CIPHER_CTX *ctx, unsigned char *out, const unsigned char *in, size_t inl); int (*cleanup)(EVP_CIPHER_CTX *); int ctx_size; int (*set_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *); int (*get_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *); int (*ctrl)(EVP_CIPHER_CTX *, int type, int arg, void *ptr); void *app_data; } ; # 362 "/usr/include/openssl/evp.h" 3 4 typedef struct evp_cipher_info_st { const EVP_CIPHER *cipher; unsigned char iv[16]; } EVP_CIPHER_INFO; struct evp_cipher_ctx_st { const EVP_CIPHER *cipher; ENGINE *engine; int encrypt; int buf_len; unsigned char oiv[16]; unsigned char iv[16]; unsigned char buf[32]; int num; void *app_data; int key_len; unsigned long flags; void *cipher_data; int final_used; int block_mask; unsigned char final[32]; } ; typedef struct evp_Encode_Ctx_st { int num; int length; unsigned char enc_data[80]; int line_num; int expect_nl; } EVP_ENCODE_CTX; typedef int (EVP_PBE_KEYGEN)(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); # 429 "/usr/include/openssl/evp.h" 3 4 int EVP_MD_type(const EVP_MD *md); int EVP_MD_pkey_type(const EVP_MD *md); int EVP_MD_size(const EVP_MD *md); int EVP_MD_block_size(const EVP_MD *md); unsigned long EVP_MD_flags(const EVP_MD *md); const EVP_MD *EVP_MD_CTX_md(const EVP_MD_CTX *ctx); int EVP_CIPHER_nid(const EVP_CIPHER *cipher); int EVP_CIPHER_block_size(const EVP_CIPHER *cipher); int EVP_CIPHER_key_length(const EVP_CIPHER *cipher); int EVP_CIPHER_iv_length(const EVP_CIPHER *cipher); unsigned long EVP_CIPHER_flags(const EVP_CIPHER *cipher); const EVP_CIPHER * EVP_CIPHER_CTX_cipher(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_nid(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_block_size(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_key_length(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_iv_length(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_copy(EVP_CIPHER_CTX *out, const EVP_CIPHER_CTX *in); void * EVP_CIPHER_CTX_get_app_data(const EVP_CIPHER_CTX *ctx); void EVP_CIPHER_CTX_set_app_data(EVP_CIPHER_CTX *ctx, void *data); unsigned long EVP_CIPHER_CTX_flags(const EVP_CIPHER_CTX *ctx); # 487 "/usr/include/openssl/evp.h" 3 4 int EVP_Cipher(EVP_CIPHER_CTX *c, unsigned char *out, const unsigned char *in, unsigned int inl); # 501 "/usr/include/openssl/evp.h" 3 4 void EVP_MD_CTX_init(EVP_MD_CTX *ctx); int EVP_MD_CTX_cleanup(EVP_MD_CTX *ctx); EVP_MD_CTX *EVP_MD_CTX_create(void); void EVP_MD_CTX_destroy(EVP_MD_CTX *ctx); int EVP_MD_CTX_copy_ex(EVP_MD_CTX *out,const EVP_MD_CTX *in); void EVP_MD_CTX_set_flags(EVP_MD_CTX *ctx, int flags); void EVP_MD_CTX_clear_flags(EVP_MD_CTX *ctx, int flags); int EVP_MD_CTX_test_flags(const EVP_MD_CTX *ctx,int flags); int EVP_DigestInit_ex(EVP_MD_CTX *ctx, const EVP_MD *type, ENGINE *impl); int EVP_DigestUpdate(EVP_MD_CTX *ctx,const void *d, size_t cnt); int EVP_DigestFinal_ex(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s); int EVP_Digest(const void *data, size_t count, unsigned char *md, unsigned int *size, const EVP_MD *type, ENGINE *impl); int EVP_MD_CTX_copy(EVP_MD_CTX *out,const EVP_MD_CTX *in); int EVP_DigestInit(EVP_MD_CTX *ctx, const EVP_MD *type); int EVP_DigestFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s); int EVP_read_pw_string(char *buf,int length,const char *prompt,int verify); int EVP_read_pw_string_min(char *buf,int minlen,int maxlen,const char *prompt,int verify); void EVP_set_pw_prompt(const char *prompt); char * EVP_get_pw_prompt(void); int EVP_BytesToKey(const EVP_CIPHER *type,const EVP_MD *md, const unsigned char *salt, const unsigned char *data, int datal, int count, unsigned char *key,unsigned char *iv); void EVP_CIPHER_CTX_set_flags(EVP_CIPHER_CTX *ctx, int flags); void EVP_CIPHER_CTX_clear_flags(EVP_CIPHER_CTX *ctx, int flags); int EVP_CIPHER_CTX_test_flags(const EVP_CIPHER_CTX *ctx,int flags); int EVP_EncryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv); int EVP_EncryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv); int EVP_EncryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_EncryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_EncryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_DecryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv); int EVP_DecryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv); int EVP_DecryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_DecryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_DecryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_CipherInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key,const unsigned char *iv, int enc); int EVP_CipherInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key,const unsigned char *iv, int enc); int EVP_CipherUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_CipherFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_CipherFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_SignFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s, EVP_PKEY *pkey); int EVP_VerifyFinal(EVP_MD_CTX *ctx,const unsigned char *sigbuf, unsigned int siglen,EVP_PKEY *pkey); int EVP_DigestSignInit(EVP_MD_CTX *ctx, EVP_PKEY_CTX **pctx, const EVP_MD *type, ENGINE *e, EVP_PKEY *pkey); int EVP_DigestSignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, size_t *siglen); int EVP_DigestVerifyInit(EVP_MD_CTX *ctx, EVP_PKEY_CTX **pctx, const EVP_MD *type, ENGINE *e, EVP_PKEY *pkey); int EVP_DigestVerifyFinal(EVP_MD_CTX *ctx, unsigned char *sig, size_t siglen); int EVP_OpenInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *type, const unsigned char *ek, int ekl, const unsigned char *iv, EVP_PKEY *priv); int EVP_OpenFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_SealInit(EVP_CIPHER_CTX *ctx, const EVP_CIPHER *type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk); int EVP_SealFinal(EVP_CIPHER_CTX *ctx,unsigned char *out,int *outl); void EVP_EncodeInit(EVP_ENCODE_CTX *ctx); void EVP_EncodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in,int inl); void EVP_EncodeFinal(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl); int EVP_EncodeBlock(unsigned char *t, const unsigned char *f, int n); void EVP_DecodeInit(EVP_ENCODE_CTX *ctx); int EVP_DecodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in, int inl); int EVP_DecodeFinal(EVP_ENCODE_CTX *ctx, unsigned char *out, int *outl); int EVP_DecodeBlock(unsigned char *t, const unsigned char *f, int n); void EVP_CIPHER_CTX_init(EVP_CIPHER_CTX *a); int EVP_CIPHER_CTX_cleanup(EVP_CIPHER_CTX *a); EVP_CIPHER_CTX *EVP_CIPHER_CTX_new(void); void EVP_CIPHER_CTX_free(EVP_CIPHER_CTX *a); int EVP_CIPHER_CTX_set_key_length(EVP_CIPHER_CTX *x, int keylen); int EVP_CIPHER_CTX_set_padding(EVP_CIPHER_CTX *c, int pad); int EVP_CIPHER_CTX_ctrl(EVP_CIPHER_CTX *ctx, int type, int arg, void *ptr); int EVP_CIPHER_CTX_rand_key(EVP_CIPHER_CTX *ctx, unsigned char *key); BIO_METHOD *BIO_f_md(void); BIO_METHOD *BIO_f_base64(void); BIO_METHOD *BIO_f_cipher(void); BIO_METHOD *BIO_f_reliable(void); void BIO_set_cipher(BIO *b,const EVP_CIPHER *c,const unsigned char *k, const unsigned char *i, int enc); const EVP_MD *EVP_md_null(void); const EVP_MD *EVP_md2(void); const EVP_MD *EVP_md4(void); const EVP_MD *EVP_md5(void); const EVP_MD *EVP_sha(void); const EVP_MD *EVP_sha1(void); const EVP_MD *EVP_dss(void); const EVP_MD *EVP_dss1(void); const EVP_MD *EVP_ecdsa(void); const EVP_MD *EVP_sha224(void); const EVP_MD *EVP_sha256(void); const EVP_MD *EVP_sha384(void); const EVP_MD *EVP_sha512(void); const EVP_MD *EVP_ripemd160(void); const EVP_MD *EVP_whirlpool(void); const EVP_CIPHER *EVP_enc_null(void); const EVP_CIPHER *EVP_des_ecb(void); const EVP_CIPHER *EVP_des_ede(void); const EVP_CIPHER *EVP_des_ede3(void); const EVP_CIPHER *EVP_des_ede_ecb(void); const EVP_CIPHER *EVP_des_ede3_ecb(void); const EVP_CIPHER *EVP_des_cfb64(void); const EVP_CIPHER *EVP_des_cfb1(void); const EVP_CIPHER *EVP_des_cfb8(void); const EVP_CIPHER *EVP_des_ede_cfb64(void); const EVP_CIPHER *EVP_des_ede3_cfb64(void); const EVP_CIPHER *EVP_des_ede3_cfb1(void); const EVP_CIPHER *EVP_des_ede3_cfb8(void); const EVP_CIPHER *EVP_des_ofb(void); const EVP_CIPHER *EVP_des_ede_ofb(void); const EVP_CIPHER *EVP_des_ede3_ofb(void); const EVP_CIPHER *EVP_des_cbc(void); const EVP_CIPHER *EVP_des_ede_cbc(void); const EVP_CIPHER *EVP_des_ede3_cbc(void); const EVP_CIPHER *EVP_desx_cbc(void); # 692 "/usr/include/openssl/evp.h" 3 4 const EVP_CIPHER *EVP_rc4(void); const EVP_CIPHER *EVP_rc4_40(void); const EVP_CIPHER *EVP_rc2_ecb(void); const EVP_CIPHER *EVP_rc2_cbc(void); const EVP_CIPHER *EVP_rc2_40_cbc(void); const EVP_CIPHER *EVP_rc2_64_cbc(void); const EVP_CIPHER *EVP_rc2_cfb64(void); const EVP_CIPHER *EVP_rc2_ofb(void); const EVP_CIPHER *EVP_bf_ecb(void); const EVP_CIPHER *EVP_bf_cbc(void); const EVP_CIPHER *EVP_bf_cfb64(void); const EVP_CIPHER *EVP_bf_ofb(void); const EVP_CIPHER *EVP_cast5_ecb(void); const EVP_CIPHER *EVP_cast5_cbc(void); const EVP_CIPHER *EVP_cast5_cfb64(void); const EVP_CIPHER *EVP_cast5_ofb(void); const EVP_CIPHER *EVP_aes_128_ecb(void); const EVP_CIPHER *EVP_aes_128_cbc(void); const EVP_CIPHER *EVP_aes_128_cfb1(void); const EVP_CIPHER *EVP_aes_128_cfb8(void); const EVP_CIPHER *EVP_aes_128_cfb128(void); const EVP_CIPHER *EVP_aes_128_ofb(void); const EVP_CIPHER *EVP_aes_192_ecb(void); const EVP_CIPHER *EVP_aes_192_cbc(void); const EVP_CIPHER *EVP_aes_192_cfb1(void); const EVP_CIPHER *EVP_aes_192_cfb8(void); const EVP_CIPHER *EVP_aes_192_cfb128(void); const EVP_CIPHER *EVP_aes_192_ofb(void); const EVP_CIPHER *EVP_aes_256_ecb(void); const EVP_CIPHER *EVP_aes_256_cbc(void); const EVP_CIPHER *EVP_aes_256_cfb1(void); const EVP_CIPHER *EVP_aes_256_cfb8(void); const EVP_CIPHER *EVP_aes_256_cfb128(void); const EVP_CIPHER *EVP_aes_256_ofb(void); const EVP_CIPHER *EVP_camellia_128_ecb(void); const EVP_CIPHER *EVP_camellia_128_cbc(void); const EVP_CIPHER *EVP_camellia_128_cfb1(void); const EVP_CIPHER *EVP_camellia_128_cfb8(void); const EVP_CIPHER *EVP_camellia_128_cfb128(void); const EVP_CIPHER *EVP_camellia_128_ofb(void); const EVP_CIPHER *EVP_camellia_192_ecb(void); const EVP_CIPHER *EVP_camellia_192_cbc(void); const EVP_CIPHER *EVP_camellia_192_cfb1(void); const EVP_CIPHER *EVP_camellia_192_cfb8(void); const EVP_CIPHER *EVP_camellia_192_cfb128(void); const EVP_CIPHER *EVP_camellia_192_ofb(void); const EVP_CIPHER *EVP_camellia_256_ecb(void); const EVP_CIPHER *EVP_camellia_256_cbc(void); const EVP_CIPHER *EVP_camellia_256_cfb1(void); const EVP_CIPHER *EVP_camellia_256_cfb8(void); const EVP_CIPHER *EVP_camellia_256_cfb128(void); const EVP_CIPHER *EVP_camellia_256_ofb(void); const EVP_CIPHER *EVP_seed_ecb(void); const EVP_CIPHER *EVP_seed_cbc(void); const EVP_CIPHER *EVP_seed_cfb128(void); const EVP_CIPHER *EVP_seed_ofb(void); void OPENSSL_add_all_algorithms_noconf(void); void OPENSSL_add_all_algorithms_conf(void); # 793 "/usr/include/openssl/evp.h" 3 4 void OpenSSL_add_all_ciphers(void); void OpenSSL_add_all_digests(void); int EVP_add_cipher(const EVP_CIPHER *cipher); int EVP_add_digest(const EVP_MD *digest); const EVP_CIPHER *EVP_get_cipherbyname(const char *name); const EVP_MD *EVP_get_digestbyname(const char *name); void EVP_cleanup(void); void EVP_CIPHER_do_all(void (*fn)(const EVP_CIPHER *ciph, const char *from, const char *to, void *x), void *arg); void EVP_CIPHER_do_all_sorted(void (*fn)(const EVP_CIPHER *ciph, const char *from, const char *to, void *x), void *arg); void EVP_MD_do_all(void (*fn)(const EVP_MD *ciph, const char *from, const char *to, void *x), void *arg); void EVP_MD_do_all_sorted(void (*fn)(const EVP_MD *ciph, const char *from, const char *to, void *x), void *arg); int EVP_PKEY_decrypt_old(unsigned char *dec_key, const unsigned char *enc_key,int enc_key_len, EVP_PKEY *private_key); int EVP_PKEY_encrypt_old(unsigned char *enc_key, const unsigned char *key,int key_len, EVP_PKEY *pub_key); int EVP_PKEY_type(int type); int EVP_PKEY_id(const EVP_PKEY *pkey); int EVP_PKEY_base_id(const EVP_PKEY *pkey); int EVP_PKEY_bits(EVP_PKEY *pkey); int EVP_PKEY_size(EVP_PKEY *pkey); int EVP_PKEY_set_type(EVP_PKEY *pkey,int type); int EVP_PKEY_set_type_str(EVP_PKEY *pkey, const char *str, int len); int EVP_PKEY_assign(EVP_PKEY *pkey,int type,void *key); void * EVP_PKEY_get0(EVP_PKEY *pkey); struct rsa_st; int EVP_PKEY_set1_RSA(EVP_PKEY *pkey,struct rsa_st *key); struct rsa_st *EVP_PKEY_get1_RSA(EVP_PKEY *pkey); struct dsa_st; int EVP_PKEY_set1_DSA(EVP_PKEY *pkey,struct dsa_st *key); struct dsa_st *EVP_PKEY_get1_DSA(EVP_PKEY *pkey); struct dh_st; int EVP_PKEY_set1_DH(EVP_PKEY *pkey,struct dh_st *key); struct dh_st *EVP_PKEY_get1_DH(EVP_PKEY *pkey); EVP_PKEY * EVP_PKEY_new(void); void EVP_PKEY_free(EVP_PKEY *pkey); EVP_PKEY * d2i_PublicKey(int type,EVP_PKEY **a, const unsigned char **pp, long length); int i2d_PublicKey(EVP_PKEY *a, unsigned char **pp); EVP_PKEY * d2i_PrivateKey(int type,EVP_PKEY **a, const unsigned char **pp, long length); EVP_PKEY * d2i_AutoPrivateKey(EVP_PKEY **a, const unsigned char **pp, long length); int i2d_PrivateKey(EVP_PKEY *a, unsigned char **pp); int EVP_PKEY_copy_parameters(EVP_PKEY *to, const EVP_PKEY *from); int EVP_PKEY_missing_parameters(const EVP_PKEY *pkey); int EVP_PKEY_save_parameters(EVP_PKEY *pkey,int mode); int EVP_PKEY_cmp_parameters(const EVP_PKEY *a, const EVP_PKEY *b); int EVP_PKEY_cmp(const EVP_PKEY *a, const EVP_PKEY *b); int EVP_PKEY_print_public(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_print_private(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_print_params(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_get_default_digest_nid(EVP_PKEY *pkey, int *pnid); int EVP_CIPHER_type(const EVP_CIPHER *ctx); int EVP_CIPHER_param_to_asn1(EVP_CIPHER_CTX *c, ASN1_TYPE *type); int EVP_CIPHER_asn1_to_param(EVP_CIPHER_CTX *c, ASN1_TYPE *type); int EVP_CIPHER_set_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type); int EVP_CIPHER_get_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type); int PKCS5_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); int PKCS5_PBKDF2_HMAC_SHA1(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, int keylen, unsigned char *out); int PKCS5_PBKDF2_HMAC(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, const EVP_MD *digest, int keylen, unsigned char *out); int PKCS5_v2_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); void PKCS5_PBE_add(void); int EVP_PBE_CipherInit (ASN1_OBJECT *pbe_obj, const char *pass, int passlen, ASN1_TYPE *param, EVP_CIPHER_CTX *ctx, int en_de); # 914 "/usr/include/openssl/evp.h" 3 4 int EVP_PBE_alg_add_type(int pbe_type, int pbe_nid, int cipher_nid, int md_nid, EVP_PBE_KEYGEN *keygen); int EVP_PBE_alg_add(int nid, const EVP_CIPHER *cipher, const EVP_MD *md, EVP_PBE_KEYGEN *keygen); int EVP_PBE_find(int type, int pbe_nid, int *pcnid, int *pmnid, EVP_PBE_KEYGEN **pkeygen); void EVP_PBE_cleanup(void); # 932 "/usr/include/openssl/evp.h" 3 4 int EVP_PKEY_asn1_get_count(void); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_get0(int idx); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_find(ENGINE **pe, int type); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_find_str(ENGINE **pe, const char *str, int len); int EVP_PKEY_asn1_add0(const EVP_PKEY_ASN1_METHOD *ameth); int EVP_PKEY_asn1_add_alias(int to, int from); int EVP_PKEY_asn1_get0_info(int *ppkey_id, int *pkey_base_id, int *ppkey_flags, const char **pinfo, const char **ppem_str, const EVP_PKEY_ASN1_METHOD *ameth); const EVP_PKEY_ASN1_METHOD* EVP_PKEY_get0_asn1(EVP_PKEY *pkey); EVP_PKEY_ASN1_METHOD* EVP_PKEY_asn1_new(int id, int flags, const char *pem_str, const char *info); void EVP_PKEY_asn1_copy(EVP_PKEY_ASN1_METHOD *dst, const EVP_PKEY_ASN1_METHOD *src); void EVP_PKEY_asn1_free(EVP_PKEY_ASN1_METHOD *ameth); void EVP_PKEY_asn1_set_public(EVP_PKEY_ASN1_METHOD *ameth, int (*pub_decode)(EVP_PKEY *pk, X509_PUBKEY *pub), int (*pub_encode)(X509_PUBKEY *pub, const EVP_PKEY *pk), int (*pub_cmp)(const EVP_PKEY *a, const EVP_PKEY *b), int (*pub_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx), int (*pkey_size)(const EVP_PKEY *pk), int (*pkey_bits)(const EVP_PKEY *pk)); void EVP_PKEY_asn1_set_private(EVP_PKEY_ASN1_METHOD *ameth, int (*priv_decode)(EVP_PKEY *pk, PKCS8_PRIV_KEY_INFO *p8inf), int (*priv_encode)(PKCS8_PRIV_KEY_INFO *p8, const EVP_PKEY *pk), int (*priv_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx)); void EVP_PKEY_asn1_set_param(EVP_PKEY_ASN1_METHOD *ameth, int (*param_decode)(EVP_PKEY *pkey, const unsigned char **pder, int derlen), int (*param_encode)(const EVP_PKEY *pkey, unsigned char **pder), int (*param_missing)(const EVP_PKEY *pk), int (*param_copy)(EVP_PKEY *to, const EVP_PKEY *from), int (*param_cmp)(const EVP_PKEY *a, const EVP_PKEY *b), int (*param_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx)); void EVP_PKEY_asn1_set_free(EVP_PKEY_ASN1_METHOD *ameth, void (*pkey_free)(EVP_PKEY *pkey)); void EVP_PKEY_asn1_set_ctrl(EVP_PKEY_ASN1_METHOD *ameth, int (*pkey_ctrl)(EVP_PKEY *pkey, int op, long arg1, void *arg2)); # 1032 "/usr/include/openssl/evp.h" 3 4 const EVP_PKEY_METHOD *EVP_PKEY_meth_find(int type); EVP_PKEY_METHOD* EVP_PKEY_meth_new(int id, int flags); void EVP_PKEY_meth_free(EVP_PKEY_METHOD *pmeth); int EVP_PKEY_meth_add0(const EVP_PKEY_METHOD *pmeth); EVP_PKEY_CTX *EVP_PKEY_CTX_new(EVP_PKEY *pkey, ENGINE *e); EVP_PKEY_CTX *EVP_PKEY_CTX_new_id(int id, ENGINE *e); EVP_PKEY_CTX *EVP_PKEY_CTX_dup(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_free(EVP_PKEY_CTX *ctx); int EVP_PKEY_CTX_ctrl(EVP_PKEY_CTX *ctx, int keytype, int optype, int cmd, int p1, void *p2); int EVP_PKEY_CTX_ctrl_str(EVP_PKEY_CTX *ctx, const char *type, const char *value); int EVP_PKEY_CTX_get_operation(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_set0_keygen_info(EVP_PKEY_CTX *ctx, int *dat, int datlen); EVP_PKEY *EVP_PKEY_new_mac_key(int type, ENGINE *e, unsigned char *key, int keylen); void EVP_PKEY_CTX_set_data(EVP_PKEY_CTX *ctx, void *data); void *EVP_PKEY_CTX_get_data(EVP_PKEY_CTX *ctx); EVP_PKEY *EVP_PKEY_CTX_get0_pkey(EVP_PKEY_CTX *ctx); EVP_PKEY *EVP_PKEY_CTX_get0_peerkey(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_set_app_data(EVP_PKEY_CTX *ctx, void *data); void *EVP_PKEY_CTX_get_app_data(EVP_PKEY_CTX *ctx); int EVP_PKEY_sign_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_sign(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen); int EVP_PKEY_verify_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_verify(EVP_PKEY_CTX *ctx, const unsigned char *sig, size_t siglen, const unsigned char *tbs, size_t tbslen); int EVP_PKEY_verify_recover_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_verify_recover(EVP_PKEY_CTX *ctx, unsigned char *rout, size_t *routlen, const unsigned char *sig, size_t siglen); int EVP_PKEY_encrypt_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_encrypt(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen); int EVP_PKEY_decrypt_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_decrypt(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen); int EVP_PKEY_derive_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_derive_set_peer(EVP_PKEY_CTX *ctx, EVP_PKEY *peer); int EVP_PKEY_derive(EVP_PKEY_CTX *ctx, unsigned char *key, size_t *keylen); typedef int EVP_PKEY_gen_cb(EVP_PKEY_CTX *ctx); int EVP_PKEY_paramgen_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_paramgen(EVP_PKEY_CTX *ctx, EVP_PKEY **ppkey); int EVP_PKEY_keygen_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_keygen(EVP_PKEY_CTX *ctx, EVP_PKEY **ppkey); void EVP_PKEY_CTX_set_cb(EVP_PKEY_CTX *ctx, EVP_PKEY_gen_cb *cb); EVP_PKEY_gen_cb *EVP_PKEY_CTX_get_cb(EVP_PKEY_CTX *ctx); int EVP_PKEY_CTX_get_keygen_info(EVP_PKEY_CTX *ctx, int idx); void EVP_PKEY_meth_set_init(EVP_PKEY_METHOD *pmeth, int (*init)(EVP_PKEY_CTX *ctx)); void EVP_PKEY_meth_set_copy(EVP_PKEY_METHOD *pmeth, int (*copy)(EVP_PKEY_CTX *dst, EVP_PKEY_CTX *src)); void EVP_PKEY_meth_set_cleanup(EVP_PKEY_METHOD *pmeth, void (*cleanup)(EVP_PKEY_CTX *ctx)); void EVP_PKEY_meth_set_paramgen(EVP_PKEY_METHOD *pmeth, int (*paramgen_init)(EVP_PKEY_CTX *ctx), int (*paramgen)(EVP_PKEY_CTX *ctx, EVP_PKEY *pkey)); void EVP_PKEY_meth_set_keygen(EVP_PKEY_METHOD *pmeth, int (*keygen_init)(EVP_PKEY_CTX *ctx), int (*keygen)(EVP_PKEY_CTX *ctx, EVP_PKEY *pkey)); void EVP_PKEY_meth_set_sign(EVP_PKEY_METHOD *pmeth, int (*sign_init)(EVP_PKEY_CTX *ctx), int (*sign)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_verify(EVP_PKEY_METHOD *pmeth, int (*verify_init)(EVP_PKEY_CTX *ctx), int (*verify)(EVP_PKEY_CTX *ctx, const unsigned char *sig, size_t siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_verify_recover(EVP_PKEY_METHOD *pmeth, int (*verify_recover_init)(EVP_PKEY_CTX *ctx), int (*verify_recover)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_signctx(EVP_PKEY_METHOD *pmeth, int (*signctx_init)(EVP_PKEY_CTX *ctx, EVP_MD_CTX *mctx), int (*signctx)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, EVP_MD_CTX *mctx)); void EVP_PKEY_meth_set_verifyctx(EVP_PKEY_METHOD *pmeth, int (*verifyctx_init)(EVP_PKEY_CTX *ctx, EVP_MD_CTX *mctx), int (*verifyctx)(EVP_PKEY_CTX *ctx, const unsigned char *sig,int siglen, EVP_MD_CTX *mctx)); void EVP_PKEY_meth_set_encrypt(EVP_PKEY_METHOD *pmeth, int (*encrypt_init)(EVP_PKEY_CTX *ctx), int (*encryptfn)(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen)); void EVP_PKEY_meth_set_decrypt(EVP_PKEY_METHOD *pmeth, int (*decrypt_init)(EVP_PKEY_CTX *ctx), int (*decrypt)(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen)); void EVP_PKEY_meth_set_derive(EVP_PKEY_METHOD *pmeth, int (*derive_init)(EVP_PKEY_CTX *ctx), int (*derive)(EVP_PKEY_CTX *ctx, unsigned char *key, size_t *keylen)); void EVP_PKEY_meth_set_ctrl(EVP_PKEY_METHOD *pmeth, int (*ctrl)(EVP_PKEY_CTX *ctx, int type, int p1, void *p2), int (*ctrl_str)(EVP_PKEY_CTX *ctx, const char *type, const char *value)); void ERR_load_EVP_strings(void); # 74 "/usr/include/openssl/x509.h" 2 3 4 # 87 "/usr/include/openssl/x509.h" 3 4 # 1 "/usr/include/openssl/rsa.h" 1 3 4 # 100 "/usr/include/openssl/rsa.h" 3 4 struct rsa_meth_st { const char *name; int (*rsa_pub_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_pub_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_priv_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_priv_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_mod_exp)(BIGNUM *r0,const BIGNUM *I,RSA *rsa,BN_CTX *ctx); int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(RSA *rsa); int (*finish)(RSA *rsa); int flags; char *app_data; int (*rsa_sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, const RSA *rsa); int (*rsa_verify)(int dtype, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, const RSA *rsa); int (*rsa_keygen)(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb); }; struct rsa_st { int pad; long version; const RSA_METHOD *meth; ENGINE *engine; BIGNUM *n; BIGNUM *e; BIGNUM *d; BIGNUM *p; BIGNUM *q; BIGNUM *dmp1; BIGNUM *dmq1; BIGNUM *iqmp; CRYPTO_EX_DATA ex_data; int references; int flags; BN_MONT_CTX *_method_mod_n; BN_MONT_CTX *_method_mod_p; BN_MONT_CTX *_method_mod_q; char *bignum_data; BN_BLINDING *blinding; BN_BLINDING *mt_blinding; }; # 275 "/usr/include/openssl/rsa.h" 3 4 RSA * RSA_new(void); RSA * RSA_new_method(ENGINE *engine); int RSA_size(const RSA *); RSA * RSA_generate_key(int bits, unsigned long e,void (*callback)(int,int,void *),void *cb_arg); int RSA_generate_key_ex(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb); int RSA_X931_derive_ex(RSA *rsa, BIGNUM *p1, BIGNUM *p2, BIGNUM *q1, BIGNUM *q2, const BIGNUM *Xp1, const BIGNUM *Xp2, const BIGNUM *Xp, const BIGNUM *Xq1, const BIGNUM *Xq2, const BIGNUM *Xq, const BIGNUM *e, BN_GENCB *cb); int RSA_X931_generate_key_ex(RSA *rsa, int bits, const BIGNUM *e, BN_GENCB *cb); int RSA_check_key(const RSA *); int RSA_public_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_private_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_public_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_private_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); void RSA_free (RSA *r); int RSA_up_ref(RSA *r); int RSA_flags(const RSA *r); void RSA_set_default_method(const RSA_METHOD *meth); const RSA_METHOD *RSA_get_default_method(void); const RSA_METHOD *RSA_get_method(const RSA *rsa); int RSA_set_method(RSA *rsa, const RSA_METHOD *meth); int RSA_memory_lock(RSA *r); const RSA_METHOD *RSA_PKCS1_SSLeay(void); const RSA_METHOD *RSA_null_method(void); RSA *d2i_RSAPublicKey(RSA **a, const unsigned char **in, long len); int i2d_RSAPublicKey(const RSA *a, unsigned char **out); extern const ASN1_ITEM RSAPublicKey_it; RSA *d2i_RSAPrivateKey(RSA **a, const unsigned char **in, long len); int i2d_RSAPrivateKey(const RSA *a, unsigned char **out); extern const ASN1_ITEM RSAPrivateKey_it; int RSA_print_fp(FILE *fp, const RSA *r,int offset); int RSA_print(BIO *bp, const RSA *r,int offset); int i2d_RSA_NET(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey); RSA *d2i_RSA_NET(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey); int i2d_Netscape_RSA(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify)); RSA *d2i_Netscape_RSA(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify)); int RSA_sign(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa); int RSA_verify(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, RSA *rsa); int RSA_sign_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa); int RSA_verify_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigbuf, unsigned int siglen, RSA *rsa); int RSA_blinding_on(RSA *rsa, BN_CTX *ctx); void RSA_blinding_off(RSA *rsa); BN_BLINDING *RSA_setup_blinding(RSA *rsa, BN_CTX *ctx); int RSA_padding_add_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int PKCS1_MGF1(unsigned char *mask, long len, const unsigned char *seed, long seedlen, const EVP_MD *dgst); int RSA_padding_add_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl, const unsigned char *p,int pl); int RSA_padding_check_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len, const unsigned char *p,int pl); int RSA_padding_add_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_none(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_none(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_X931(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_X931(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_X931_hash_id(int nid); int RSA_verify_PKCS1_PSS(RSA *rsa, const unsigned char *mHash, const EVP_MD *Hash, const unsigned char *EM, int sLen); int RSA_padding_add_PKCS1_PSS(RSA *rsa, unsigned char *EM, const unsigned char *mHash, const EVP_MD *Hash, int sLen); int RSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int RSA_set_ex_data(RSA *r,int idx,void *arg); void *RSA_get_ex_data(const RSA *r, int idx); RSA *RSAPublicKey_dup(RSA *rsa); RSA *RSAPrivateKey_dup(RSA *rsa); void ERR_load_RSA_strings(void); # 88 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/dsa.h" 1 3 4 # 68 "/usr/include/openssl/dsa.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 69 "/usr/include/openssl/dsa.h" 2 3 4 # 83 "/usr/include/openssl/dsa.h" 3 4 # 1 "/usr/include/openssl/dh.h" 1 3 4 # 62 "/usr/include/openssl/dh.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/dh.h" 2 3 4 # 99 "/usr/include/openssl/dh.h" 3 4 struct dh_method { const char *name; int (*generate_key)(DH *dh); int (*compute_key)(unsigned char *key,const BIGNUM *pub_key,DH *dh); int (*bn_mod_exp)(const DH *dh, BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(DH *dh); int (*finish)(DH *dh); int flags; char *app_data; int (*generate_params)(DH *dh, int prime_len, int generator, BN_GENCB *cb); }; struct dh_st { int pad; int version; BIGNUM *p; BIGNUM *g; long length; BIGNUM *pub_key; BIGNUM *priv_key; int flags; BN_MONT_CTX *method_mont_p; BIGNUM *q; BIGNUM *j; unsigned char *seed; int seedlen; BIGNUM *counter; int references; CRYPTO_EX_DATA ex_data; const DH_METHOD *meth; ENGINE *engine; }; # 169 "/usr/include/openssl/dh.h" 3 4 DH *DHparams_dup(DH *); const DH_METHOD *DH_OpenSSL(void); void DH_set_default_method(const DH_METHOD *meth); const DH_METHOD *DH_get_default_method(void); int DH_set_method(DH *dh, const DH_METHOD *meth); DH *DH_new_method(ENGINE *engine); DH * DH_new(void); void DH_free(DH *dh); int DH_up_ref(DH *dh); int DH_size(const DH *dh); int DH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int DH_set_ex_data(DH *d, int idx, void *arg); void *DH_get_ex_data(DH *d, int idx); DH * DH_generate_parameters(int prime_len,int generator, void (*callback)(int,int,void *),void *cb_arg); int DH_generate_parameters_ex(DH *dh, int prime_len,int generator, BN_GENCB *cb); int DH_check(const DH *dh,int *codes); int DH_check_pub_key(const DH *dh,const BIGNUM *pub_key, int *codes); int DH_generate_key(DH *dh); int DH_compute_key(unsigned char *key,const BIGNUM *pub_key,DH *dh); DH * d2i_DHparams(DH **a,const unsigned char **pp, long length); int i2d_DHparams(const DH *a,unsigned char **pp); int DHparams_print_fp(FILE *fp, const DH *x); int DHparams_print(BIO *bp, const DH *x); # 227 "/usr/include/openssl/dh.h" 3 4 void ERR_load_DH_strings(void); # 84 "/usr/include/openssl/dsa.h" 2 3 4 # 125 "/usr/include/openssl/dsa.h" 3 4 typedef struct DSA_SIG_st { BIGNUM *r; BIGNUM *s; } DSA_SIG; struct dsa_method { const char *name; DSA_SIG * (*dsa_do_sign)(const unsigned char *dgst, int dlen, DSA *dsa); int (*dsa_sign_setup)(DSA *dsa, BN_CTX *ctx_in, BIGNUM **kinvp, BIGNUM **rp); int (*dsa_do_verify)(const unsigned char *dgst, int dgst_len, DSA_SIG *sig, DSA *dsa); int (*dsa_mod_exp)(DSA *dsa, BIGNUM *rr, BIGNUM *a1, BIGNUM *p1, BIGNUM *a2, BIGNUM *p2, BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont); int (*bn_mod_exp)(DSA *dsa, BIGNUM *r, BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(DSA *dsa); int (*finish)(DSA *dsa); int flags; char *app_data; int (*dsa_paramgen)(DSA *dsa, int bits, const unsigned char *seed, int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int (*dsa_keygen)(DSA *dsa); }; struct dsa_st { int pad; long version; int write_params; BIGNUM *p; BIGNUM *q; BIGNUM *g; BIGNUM *pub_key; BIGNUM *priv_key; BIGNUM *kinv; BIGNUM *r; int flags; BN_MONT_CTX *method_mont_p; int references; CRYPTO_EX_DATA ex_data; const DSA_METHOD *meth; ENGINE *engine; }; # 193 "/usr/include/openssl/dsa.h" 3 4 DSA *DSAparams_dup(DSA *x); DSA_SIG * DSA_SIG_new(void); void DSA_SIG_free(DSA_SIG *a); int i2d_DSA_SIG(const DSA_SIG *a, unsigned char **pp); DSA_SIG * d2i_DSA_SIG(DSA_SIG **v, const unsigned char **pp, long length); DSA_SIG * DSA_do_sign(const unsigned char *dgst,int dlen,DSA *dsa); int DSA_do_verify(const unsigned char *dgst,int dgst_len, DSA_SIG *sig,DSA *dsa); const DSA_METHOD *DSA_OpenSSL(void); void DSA_set_default_method(const DSA_METHOD *); const DSA_METHOD *DSA_get_default_method(void); int DSA_set_method(DSA *dsa, const DSA_METHOD *); DSA * DSA_new(void); DSA * DSA_new_method(ENGINE *engine); void DSA_free (DSA *r); int DSA_up_ref(DSA *r); int DSA_size(const DSA *); int DSA_sign_setup( DSA *dsa,BN_CTX *ctx_in,BIGNUM **kinvp,BIGNUM **rp); int DSA_sign(int type,const unsigned char *dgst,int dlen, unsigned char *sig, unsigned int *siglen, DSA *dsa); int DSA_verify(int type,const unsigned char *dgst,int dgst_len, const unsigned char *sigbuf, int siglen, DSA *dsa); int DSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int DSA_set_ex_data(DSA *d, int idx, void *arg); void *DSA_get_ex_data(DSA *d, int idx); DSA * d2i_DSAPublicKey(DSA **a, const unsigned char **pp, long length); DSA * d2i_DSAPrivateKey(DSA **a, const unsigned char **pp, long length); DSA * d2i_DSAparams(DSA **a, const unsigned char **pp, long length); DSA * DSA_generate_parameters(int bits, unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret,void (*callback)(int, int, void *),void *cb_arg); int DSA_generate_parameters_ex(DSA *dsa, int bits, const unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int DSA_generate_key(DSA *a); int i2d_DSAPublicKey(const DSA *a, unsigned char **pp); int i2d_DSAPrivateKey(const DSA *a, unsigned char **pp); int i2d_DSAparams(const DSA *a,unsigned char **pp); int DSAparams_print(BIO *bp, const DSA *x); int DSA_print(BIO *bp, const DSA *x, int off); int DSAparams_print_fp(FILE *fp, const DSA *x); int DSA_print_fp(FILE *bp, const DSA *x, int off); # 266 "/usr/include/openssl/dsa.h" 3 4 DH *DSA_dup_DH(const DSA *r); int FIPS_dsa_builtin_paramgen(DSA *ret, size_t bits, size_t qbits, const EVP_MD *evpmd, const unsigned char *seed_in, size_t seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int FIPS_dsa_generate_pq(BN_CTX *ctx, size_t bits, size_t qbits, const EVP_MD *evpmd, unsigned char *seed, int seed_len, BIGNUM **p_ret, BIGNUM **q_ret, int *counter_ret, BN_GENCB *cb); int FIPS_dsa_generate_g(BN_CTX *ctx, BIGNUM *p, BIGNUM *q, BIGNUM **g_ret, unsigned long *h_ret, BN_GENCB *cb); # 292 "/usr/include/openssl/dsa.h" 3 4 void ERR_load_DSA_strings(void); # 91 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/sha.h" 1 3 4 # 62 "/usr/include/openssl/sha.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/sha.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 64 "/usr/include/openssl/sha.h" 2 3 4 # 100 "/usr/include/openssl/sha.h" 3 4 typedef struct SHAstate_st { unsigned int h0,h1,h2,h3,h4; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num; } SHA_CTX; int private_SHA_Init(SHA_CTX *c); int SHA_Init(SHA_CTX *c); int SHA_Update(SHA_CTX *c, const void *data, size_t len); int SHA_Final(unsigned char *md, SHA_CTX *c); unsigned char *SHA(const unsigned char *d, size_t n, unsigned char *md); void SHA_Transform(SHA_CTX *c, const unsigned char *data); int SHA1_Init(SHA_CTX *c); int SHA1_Update(SHA_CTX *c, const void *data, size_t len); int SHA1_Final(unsigned char *md, SHA_CTX *c); unsigned char *SHA1(const unsigned char *d, size_t n, unsigned char *md); void SHA1_Transform(SHA_CTX *c, const unsigned char *data); # 132 "/usr/include/openssl/sha.h" 3 4 typedef struct SHA256state_st { unsigned int h[8]; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num,md_len; } SHA256_CTX; int SHA224_Init(SHA256_CTX *c); int SHA224_Update(SHA256_CTX *c, const void *data, size_t len); int SHA224_Final(unsigned char *md, SHA256_CTX *c); unsigned char *SHA224(const unsigned char *d, size_t n,unsigned char *md); int SHA256_Init(SHA256_CTX *c); int SHA256_Update(SHA256_CTX *c, const void *data, size_t len); int SHA256_Final(unsigned char *md, SHA256_CTX *c); unsigned char *SHA256(const unsigned char *d, size_t n,unsigned char *md); void SHA256_Transform(SHA256_CTX *c, const unsigned char *data); # 175 "/usr/include/openssl/sha.h" 3 4 typedef struct SHA512state_st { unsigned long long h[8]; unsigned long long Nl,Nh; union { unsigned long long d[16]; unsigned char p[(16*8)]; } u; unsigned int num,md_len; } SHA512_CTX; int SHA384_Init(SHA512_CTX *c); int SHA384_Update(SHA512_CTX *c, const void *data, size_t len); int SHA384_Final(unsigned char *md, SHA512_CTX *c); unsigned char *SHA384(const unsigned char *d, size_t n,unsigned char *md); int SHA512_Init(SHA512_CTX *c); int SHA512_Update(SHA512_CTX *c, const void *data, size_t len); int SHA512_Final(unsigned char *md, SHA512_CTX *c); unsigned char *SHA512(const unsigned char *d, size_t n,unsigned char *md); void SHA512_Transform(SHA512_CTX *c, const unsigned char *data); # 99 "/usr/include/openssl/x509.h" 2 3 4 # 128 "/usr/include/openssl/x509.h" 3 4 typedef struct X509_objects_st { int nid; int (*a2i)(void); int (*i2a)(void); } X509_OBJECTS; struct X509_algor_st { ASN1_OBJECT *algorithm; ASN1_TYPE *parameter; } ; typedef struct stack_st_X509_ALGOR X509_ALGORS; typedef struct X509_val_st { ASN1_TIME *notBefore; ASN1_TIME *notAfter; } X509_VAL; struct X509_pubkey_st { X509_ALGOR *algor; ASN1_BIT_STRING *public_key; EVP_PKEY *pkey; }; typedef struct X509_sig_st { X509_ALGOR *algor; ASN1_OCTET_STRING *digest; } X509_SIG; typedef struct X509_name_entry_st { ASN1_OBJECT *object; ASN1_STRING *value; int set; int size; } X509_NAME_ENTRY; struct stack_st_X509_NAME_ENTRY { _STACK stack; }; struct X509_name_st { struct stack_st_X509_NAME_ENTRY *entries; int modified; BUF_MEM *bytes; unsigned char *canon_enc; int canon_enclen; } ; struct stack_st_X509_NAME { _STACK stack; }; typedef struct X509_extension_st { ASN1_OBJECT *object; ASN1_BOOLEAN critical; ASN1_OCTET_STRING *value; } X509_EXTENSION; typedef struct stack_st_X509_EXTENSION X509_EXTENSIONS; struct stack_st_X509_EXTENSION { _STACK stack; }; typedef struct x509_attributes_st { ASN1_OBJECT *object; int single; union { char *ptr; struct stack_st_ASN1_TYPE *set; ASN1_TYPE *single; } value; } X509_ATTRIBUTE; struct stack_st_X509_ATTRIBUTE { _STACK stack; }; typedef struct X509_req_info_st { ASN1_ENCODING enc; ASN1_INTEGER *version; X509_NAME *subject; X509_PUBKEY *pubkey; struct stack_st_X509_ATTRIBUTE *attributes; } X509_REQ_INFO; typedef struct X509_req_st { X509_REQ_INFO *req_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; } X509_REQ; typedef struct x509_cinf_st { ASN1_INTEGER *version; ASN1_INTEGER *serialNumber; X509_ALGOR *signature; X509_NAME *issuer; X509_VAL *validity; X509_NAME *subject; X509_PUBKEY *key; ASN1_BIT_STRING *issuerUID; ASN1_BIT_STRING *subjectUID; struct stack_st_X509_EXTENSION *extensions; } X509_CINF; typedef struct x509_cert_aux_st { struct stack_st_ASN1_OBJECT *trust; struct stack_st_ASN1_OBJECT *reject; ASN1_UTF8STRING *alias; ASN1_OCTET_STRING *keyid; struct stack_st_X509_ALGOR *other; } X509_CERT_AUX; struct x509_st { X509_CINF *cert_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int valid; int references; char *name; CRYPTO_EX_DATA ex_data; long ex_pathlen; long ex_pcpathlen; unsigned long ex_flags; unsigned long ex_kusage; unsigned long ex_xkusage; unsigned long ex_nscert; ASN1_OCTET_STRING *skid; AUTHORITY_KEYID *akid; X509_POLICY_CACHE *policy_cache; struct stack_st_DIST_POINT *crldp; struct stack_st_GENERAL_NAME *altname; NAME_CONSTRAINTS *nc; struct stack_st_IPAddressFamily *rfc3779_addr; struct ASIdentifiers_st *rfc3779_asid; unsigned char sha1_hash[20]; X509_CERT_AUX *aux; } ; struct stack_st_X509 { _STACK stack; }; typedef struct x509_trust_st { int trust; int flags; int (*check_trust)(struct x509_trust_st *, X509 *, int); char *name; int arg1; void *arg2; } X509_TRUST; struct stack_st_X509_TRUST { _STACK stack; }; typedef struct x509_cert_pair_st { X509 *forward; X509 *reverse; } X509_CERT_PAIR; # 424 "/usr/include/openssl/x509.h" 3 4 struct x509_revoked_st { ASN1_INTEGER *serialNumber; ASN1_TIME *revocationDate; struct stack_st_X509_EXTENSION *extensions; struct stack_st_GENERAL_NAME *issuer; int reason; int sequence; }; struct stack_st_X509_REVOKED { _STACK stack; }; typedef struct X509_crl_info_st { ASN1_INTEGER *version; X509_ALGOR *sig_alg; X509_NAME *issuer; ASN1_TIME *lastUpdate; ASN1_TIME *nextUpdate; struct stack_st_X509_REVOKED *revoked; struct stack_st_X509_EXTENSION *extensions; ASN1_ENCODING enc; } X509_CRL_INFO; struct X509_crl_st { X509_CRL_INFO *crl; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; int flags; AUTHORITY_KEYID *akid; ISSUING_DIST_POINT *idp; int idp_flags; int idp_reasons; ASN1_INTEGER *crl_number; ASN1_INTEGER *base_crl_number; unsigned char sha1_hash[20]; struct stack_st_GENERAL_NAMES *issuers; const X509_CRL_METHOD *meth; void *meth_data; } ; struct stack_st_X509_CRL { _STACK stack; }; typedef struct private_key_st { int version; X509_ALGOR *enc_algor; ASN1_OCTET_STRING *enc_pkey; EVP_PKEY *dec_pkey; int key_length; char *key_data; int key_free; EVP_CIPHER_INFO cipher; int references; } X509_PKEY; typedef struct X509_info_st { X509 *x509; X509_CRL *crl; X509_PKEY *x_pkey; EVP_CIPHER_INFO enc_cipher; int enc_len; char *enc_data; int references; } X509_INFO; struct stack_st_X509_INFO { _STACK stack; }; typedef struct Netscape_spkac_st { X509_PUBKEY *pubkey; ASN1_IA5STRING *challenge; } NETSCAPE_SPKAC; typedef struct Netscape_spki_st { NETSCAPE_SPKAC *spkac; X509_ALGOR *sig_algor; ASN1_BIT_STRING *signature; } NETSCAPE_SPKI; typedef struct Netscape_certificate_sequence { ASN1_OBJECT *type; struct stack_st_X509 *certs; } NETSCAPE_CERT_SEQUENCE; # 550 "/usr/include/openssl/x509.h" 3 4 typedef struct PBEPARAM_st { ASN1_OCTET_STRING *salt; ASN1_INTEGER *iter; } PBEPARAM; typedef struct PBE2PARAM_st { X509_ALGOR *keyfunc; X509_ALGOR *encryption; } PBE2PARAM; typedef struct PBKDF2PARAM_st { ASN1_TYPE *salt; ASN1_INTEGER *iter; ASN1_INTEGER *keylength; X509_ALGOR *prf; } PBKDF2PARAM; struct pkcs8_priv_key_info_st { int broken; ASN1_INTEGER *version; X509_ALGOR *pkeyalg; ASN1_TYPE *pkey; struct stack_st_X509_ATTRIBUTE *attributes; }; # 1 "/usr/include/openssl/x509_vfy.h" 1 3 4 # 68 "/usr/include/openssl/x509_vfy.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 69 "/usr/include/openssl/x509_vfy.h" 2 3 4 # 1 "/usr/include/openssl/lhash.h" 1 3 4 # 66 "/usr/include/openssl/lhash.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 67 "/usr/include/openssl/lhash.h" 2 3 4 # 79 "/usr/include/openssl/lhash.h" 3 4 typedef struct lhash_node_st { void *data; struct lhash_node_st *next; unsigned long hash; } LHASH_NODE; typedef int (*LHASH_COMP_FN_TYPE)(const void *, const void *); typedef unsigned long (*LHASH_HASH_FN_TYPE)(const void *); typedef void (*LHASH_DOALL_FN_TYPE)(void *); typedef void (*LHASH_DOALL_ARG_FN_TYPE)(void *, void *); # 138 "/usr/include/openssl/lhash.h" 3 4 typedef struct lhash_st { LHASH_NODE **b; LHASH_COMP_FN_TYPE comp; LHASH_HASH_FN_TYPE hash; unsigned int num_nodes; unsigned int num_alloc_nodes; unsigned int p; unsigned int pmax; unsigned long up_load; unsigned long down_load; unsigned long num_items; unsigned long num_expands; unsigned long num_expand_reallocs; unsigned long num_contracts; unsigned long num_contract_reallocs; unsigned long num_hash_calls; unsigned long num_comp_calls; unsigned long num_insert; unsigned long num_replace; unsigned long num_delete; unsigned long num_no_delete; unsigned long num_retrieve; unsigned long num_retrieve_miss; unsigned long num_hash_comps; int error; } _LHASH; # 175 "/usr/include/openssl/lhash.h" 3 4 _LHASH *lh_new(LHASH_HASH_FN_TYPE h, LHASH_COMP_FN_TYPE c); void lh_free(_LHASH *lh); void *lh_insert(_LHASH *lh, void *data); void *lh_delete(_LHASH *lh, const void *data); void *lh_retrieve(_LHASH *lh, const void *data); void lh_doall(_LHASH *lh, LHASH_DOALL_FN_TYPE func); void lh_doall_arg(_LHASH *lh, LHASH_DOALL_ARG_FN_TYPE func, void *arg); unsigned long lh_strhash(const char *c); unsigned long lh_num_items(const _LHASH *lh); void lh_stats(const _LHASH *lh, FILE *out); void lh_node_stats(const _LHASH *lh, FILE *out); void lh_node_usage_stats(const _LHASH *lh, FILE *out); void lh_stats_bio(const _LHASH *lh, BIO *out); void lh_node_stats_bio(const _LHASH *lh, BIO *out); void lh_node_usage_stats_bio(const _LHASH *lh, BIO *out); # 233 "/usr/include/openssl/lhash.h" 3 4 struct lhash_st_OPENSSL_STRING { int dummy; }; struct lhash_st_OPENSSL_CSTRING { int dummy; }; # 71 "/usr/include/openssl/x509_vfy.h" 2 3 4 # 91 "/usr/include/openssl/x509_vfy.h" 3 4 typedef struct x509_file_st { int num_paths; int num_alloced; char **paths; int *path_type; } X509_CERT_FILE_CTX; # 123 "/usr/include/openssl/x509_vfy.h" 3 4 typedef struct x509_object_st { int type; union { char *ptr; X509 *x509; X509_CRL *crl; EVP_PKEY *pkey; } data; } X509_OBJECT; typedef struct x509_lookup_st X509_LOOKUP; struct stack_st_X509_LOOKUP { _STACK stack; }; struct stack_st_X509_OBJECT { _STACK stack; }; typedef struct x509_lookup_method_st { const char *name; int (*new_item)(X509_LOOKUP *ctx); void (*free)(X509_LOOKUP *ctx); int (*init)(X509_LOOKUP *ctx); int (*shutdown)(X509_LOOKUP *ctx); int (*ctrl)(X509_LOOKUP *ctx,int cmd,const char *argc,long argl, char **ret); int (*get_by_subject)(X509_LOOKUP *ctx,int type,X509_NAME *name, X509_OBJECT *ret); int (*get_by_issuer_serial)(X509_LOOKUP *ctx,int type,X509_NAME *name, ASN1_INTEGER *serial,X509_OBJECT *ret); int (*get_by_fingerprint)(X509_LOOKUP *ctx,int type, unsigned char *bytes,int len, X509_OBJECT *ret); int (*get_by_alias)(X509_LOOKUP *ctx,int type,char *str,int len, X509_OBJECT *ret); } X509_LOOKUP_METHOD; typedef struct X509_VERIFY_PARAM_st { char *name; time_t check_time; unsigned long inh_flags; unsigned long flags; int purpose; int trust; int depth; struct stack_st_ASN1_OBJECT *policies; } X509_VERIFY_PARAM; struct stack_st_X509_VERIFY_PARAM { _STACK stack; }; struct x509_store_st { int cache; struct stack_st_X509_OBJECT *objs; struct stack_st_X509_LOOKUP *get_cert_methods; X509_VERIFY_PARAM *param; int (*verify)(X509_STORE_CTX *ctx); int (*verify_cb)(int ok,X509_STORE_CTX *ctx); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer); int (*check_revocation)(X509_STORE_CTX *ctx); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x); struct stack_st_X509 * (*lookup_certs)(X509_STORE_CTX *ctx, X509_NAME *nm); struct stack_st_X509_CRL * (*lookup_crls)(X509_STORE_CTX *ctx, X509_NAME *nm); int (*cleanup)(X509_STORE_CTX *ctx); CRYPTO_EX_DATA ex_data; int references; } ; int X509_STORE_set_depth(X509_STORE *store, int depth); struct x509_lookup_st { int init; int skip; X509_LOOKUP_METHOD *method; char *method_data; X509_STORE *store_ctx; } ; struct x509_store_ctx_st { X509_STORE *ctx; int current_method; X509 *cert; struct stack_st_X509 *untrusted; struct stack_st_X509_CRL *crls; X509_VERIFY_PARAM *param; void *other_ctx; int (*verify)(X509_STORE_CTX *ctx); int (*verify_cb)(int ok,X509_STORE_CTX *ctx); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer); int (*check_revocation)(X509_STORE_CTX *ctx); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x); int (*check_policy)(X509_STORE_CTX *ctx); struct stack_st_X509 * (*lookup_certs)(X509_STORE_CTX *ctx, X509_NAME *nm); struct stack_st_X509_CRL * (*lookup_crls)(X509_STORE_CTX *ctx, X509_NAME *nm); int (*cleanup)(X509_STORE_CTX *ctx); int valid; int last_untrusted; struct stack_st_X509 *chain; X509_POLICY_TREE *tree; int explicit_policy; int error_depth; int error; X509 *current_cert; X509 *current_issuer; X509_CRL *current_crl; int current_crl_score; unsigned int current_reasons; X509_STORE_CTX *parent; CRYPTO_EX_DATA ex_data; } ; void X509_STORE_CTX_set_depth(X509_STORE_CTX *ctx, int depth); # 406 "/usr/include/openssl/x509_vfy.h" 3 4 int X509_OBJECT_idx_by_subject(struct stack_st_X509_OBJECT *h, int type, X509_NAME *name); X509_OBJECT *X509_OBJECT_retrieve_by_subject(struct stack_st_X509_OBJECT *h,int type,X509_NAME *name); X509_OBJECT *X509_OBJECT_retrieve_match(struct stack_st_X509_OBJECT *h, X509_OBJECT *x); void X509_OBJECT_up_ref_count(X509_OBJECT *a); void X509_OBJECT_free_contents(X509_OBJECT *a); X509_STORE *X509_STORE_new(void ); void X509_STORE_free(X509_STORE *v); struct stack_st_X509* X509_STORE_get1_certs(X509_STORE_CTX *st, X509_NAME *nm); struct stack_st_X509_CRL* X509_STORE_get1_crls(X509_STORE_CTX *st, X509_NAME *nm); int X509_STORE_set_flags(X509_STORE *ctx, unsigned long flags); int X509_STORE_set_purpose(X509_STORE *ctx, int purpose); int X509_STORE_set_trust(X509_STORE *ctx, int trust); int X509_STORE_set1_param(X509_STORE *ctx, X509_VERIFY_PARAM *pm); void X509_STORE_set_verify_cb(X509_STORE *ctx, int (*verify_cb)(int, X509_STORE_CTX *)); X509_STORE_CTX *X509_STORE_CTX_new(void); int X509_STORE_CTX_get1_issuer(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); void X509_STORE_CTX_free(X509_STORE_CTX *ctx); int X509_STORE_CTX_init(X509_STORE_CTX *ctx, X509_STORE *store, X509 *x509, struct stack_st_X509 *chain); void X509_STORE_CTX_trusted_stack(X509_STORE_CTX *ctx, struct stack_st_X509 *sk); void X509_STORE_CTX_cleanup(X509_STORE_CTX *ctx); X509_LOOKUP *X509_STORE_add_lookup(X509_STORE *v, X509_LOOKUP_METHOD *m); X509_LOOKUP_METHOD *X509_LOOKUP_hash_dir(void); X509_LOOKUP_METHOD *X509_LOOKUP_file(void); int X509_STORE_add_cert(X509_STORE *ctx, X509 *x); int X509_STORE_add_crl(X509_STORE *ctx, X509_CRL *x); int X509_STORE_get_by_subject(X509_STORE_CTX *vs,int type,X509_NAME *name, X509_OBJECT *ret); int X509_LOOKUP_ctrl(X509_LOOKUP *ctx, int cmd, const char *argc, long argl, char **ret); int X509_load_cert_file(X509_LOOKUP *ctx, const char *file, int type); int X509_load_crl_file(X509_LOOKUP *ctx, const char *file, int type); int X509_load_cert_crl_file(X509_LOOKUP *ctx, const char *file, int type); X509_LOOKUP *X509_LOOKUP_new(X509_LOOKUP_METHOD *method); void X509_LOOKUP_free(X509_LOOKUP *ctx); int X509_LOOKUP_init(X509_LOOKUP *ctx); int X509_LOOKUP_by_subject(X509_LOOKUP *ctx, int type, X509_NAME *name, X509_OBJECT *ret); int X509_LOOKUP_by_issuer_serial(X509_LOOKUP *ctx, int type, X509_NAME *name, ASN1_INTEGER *serial, X509_OBJECT *ret); int X509_LOOKUP_by_fingerprint(X509_LOOKUP *ctx, int type, unsigned char *bytes, int len, X509_OBJECT *ret); int X509_LOOKUP_by_alias(X509_LOOKUP *ctx, int type, char *str, int len, X509_OBJECT *ret); int X509_LOOKUP_shutdown(X509_LOOKUP *ctx); int X509_STORE_load_locations (X509_STORE *ctx, const char *file, const char *dir); int X509_STORE_set_default_paths(X509_STORE *ctx); int X509_STORE_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int X509_STORE_CTX_set_ex_data(X509_STORE_CTX *ctx,int idx,void *data); void * X509_STORE_CTX_get_ex_data(X509_STORE_CTX *ctx,int idx); int X509_STORE_CTX_get_error(X509_STORE_CTX *ctx); void X509_STORE_CTX_set_error(X509_STORE_CTX *ctx,int s); int X509_STORE_CTX_get_error_depth(X509_STORE_CTX *ctx); X509 * X509_STORE_CTX_get_current_cert(X509_STORE_CTX *ctx); X509 *X509_STORE_CTX_get0_current_issuer(X509_STORE_CTX *ctx); X509_CRL *X509_STORE_CTX_get0_current_crl(X509_STORE_CTX *ctx); X509_STORE_CTX *X509_STORE_CTX_get0_parent_ctx(X509_STORE_CTX *ctx); struct stack_st_X509 *X509_STORE_CTX_get_chain(X509_STORE_CTX *ctx); struct stack_st_X509 *X509_STORE_CTX_get1_chain(X509_STORE_CTX *ctx); void X509_STORE_CTX_set_cert(X509_STORE_CTX *c,X509 *x); void X509_STORE_CTX_set_chain(X509_STORE_CTX *c,struct stack_st_X509 *sk); void X509_STORE_CTX_set0_crls(X509_STORE_CTX *c,struct stack_st_X509_CRL *sk); int X509_STORE_CTX_set_purpose(X509_STORE_CTX *ctx, int purpose); int X509_STORE_CTX_set_trust(X509_STORE_CTX *ctx, int trust); int X509_STORE_CTX_purpose_inherit(X509_STORE_CTX *ctx, int def_purpose, int purpose, int trust); void X509_STORE_CTX_set_flags(X509_STORE_CTX *ctx, unsigned long flags); void X509_STORE_CTX_set_time(X509_STORE_CTX *ctx, unsigned long flags, time_t t); void X509_STORE_CTX_set_verify_cb(X509_STORE_CTX *ctx, int (*verify_cb)(int, X509_STORE_CTX *)); X509_POLICY_TREE *X509_STORE_CTX_get0_policy_tree(X509_STORE_CTX *ctx); int X509_STORE_CTX_get_explicit_policy(X509_STORE_CTX *ctx); X509_VERIFY_PARAM *X509_STORE_CTX_get0_param(X509_STORE_CTX *ctx); void X509_STORE_CTX_set0_param(X509_STORE_CTX *ctx, X509_VERIFY_PARAM *param); int X509_STORE_CTX_set_default(X509_STORE_CTX *ctx, const char *name); X509_VERIFY_PARAM *X509_VERIFY_PARAM_new(void); void X509_VERIFY_PARAM_free(X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_inherit(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from); int X509_VERIFY_PARAM_set1(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from); int X509_VERIFY_PARAM_set1_name(X509_VERIFY_PARAM *param, const char *name); int X509_VERIFY_PARAM_set_flags(X509_VERIFY_PARAM *param, unsigned long flags); int X509_VERIFY_PARAM_clear_flags(X509_VERIFY_PARAM *param, unsigned long flags); unsigned long X509_VERIFY_PARAM_get_flags(X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_set_purpose(X509_VERIFY_PARAM *param, int purpose); int X509_VERIFY_PARAM_set_trust(X509_VERIFY_PARAM *param, int trust); void X509_VERIFY_PARAM_set_depth(X509_VERIFY_PARAM *param, int depth); void X509_VERIFY_PARAM_set_time(X509_VERIFY_PARAM *param, time_t t); int X509_VERIFY_PARAM_add0_policy(X509_VERIFY_PARAM *param, ASN1_OBJECT *policy); int X509_VERIFY_PARAM_set1_policies(X509_VERIFY_PARAM *param, struct stack_st_ASN1_OBJECT *policies); int X509_VERIFY_PARAM_get_depth(const X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_add0_table(X509_VERIFY_PARAM *param); const X509_VERIFY_PARAM *X509_VERIFY_PARAM_lookup(const char *name); void X509_VERIFY_PARAM_table_cleanup(void); int X509_policy_check(X509_POLICY_TREE **ptree, int *pexplicit_policy, struct stack_st_X509 *certs, struct stack_st_ASN1_OBJECT *policy_oids, unsigned int flags); void X509_policy_tree_free(X509_POLICY_TREE *tree); int X509_policy_tree_level_count(const X509_POLICY_TREE *tree); X509_POLICY_LEVEL * X509_policy_tree_get0_level(const X509_POLICY_TREE *tree, int i); struct stack_st_X509_POLICY_NODE * X509_policy_tree_get0_policies(const X509_POLICY_TREE *tree); struct stack_st_X509_POLICY_NODE * X509_policy_tree_get0_user_policies(const X509_POLICY_TREE *tree); int X509_policy_level_node_count(X509_POLICY_LEVEL *level); X509_POLICY_NODE *X509_policy_level_get0_node(X509_POLICY_LEVEL *level, int i); const ASN1_OBJECT *X509_policy_node_get0_policy(const X509_POLICY_NODE *node); struct stack_st_POLICYQUALINFO * X509_policy_node_get0_qualifiers(const X509_POLICY_NODE *node); const X509_POLICY_NODE * X509_policy_node_get0_parent(const X509_POLICY_NODE *node); # 591 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/pkcs7.h" 1 3 4 # 64 "/usr/include/openssl/pkcs7.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 65 "/usr/include/openssl/pkcs7.h" 2 3 4 # 86 "/usr/include/openssl/pkcs7.h" 3 4 typedef struct pkcs7_issuer_and_serial_st { X509_NAME *issuer; ASN1_INTEGER *serial; } PKCS7_ISSUER_AND_SERIAL; typedef struct pkcs7_signer_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *digest_alg; struct stack_st_X509_ATTRIBUTE *auth_attr; X509_ALGOR *digest_enc_alg; ASN1_OCTET_STRING *enc_digest; struct stack_st_X509_ATTRIBUTE *unauth_attr; EVP_PKEY *pkey; } PKCS7_SIGNER_INFO; struct stack_st_PKCS7_SIGNER_INFO { _STACK stack; }; typedef struct pkcs7_recip_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *key_enc_algor; ASN1_OCTET_STRING *enc_key; X509 *cert; } PKCS7_RECIP_INFO; struct stack_st_PKCS7_RECIP_INFO { _STACK stack; }; typedef struct pkcs7_signed_st { ASN1_INTEGER *version; struct stack_st_X509_ALGOR *md_algs; struct stack_st_X509 *cert; struct stack_st_X509_CRL *crl; struct stack_st_PKCS7_SIGNER_INFO *signer_info; struct pkcs7_st *contents; } PKCS7_SIGNED; typedef struct pkcs7_enc_content_st { ASN1_OBJECT *content_type; X509_ALGOR *algorithm; ASN1_OCTET_STRING *enc_data; const EVP_CIPHER *cipher; } PKCS7_ENC_CONTENT; typedef struct pkcs7_enveloped_st { ASN1_INTEGER *version; struct stack_st_PKCS7_RECIP_INFO *recipientinfo; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENVELOPE; typedef struct pkcs7_signedandenveloped_st { ASN1_INTEGER *version; struct stack_st_X509_ALGOR *md_algs; struct stack_st_X509 *cert; struct stack_st_X509_CRL *crl; struct stack_st_PKCS7_SIGNER_INFO *signer_info; PKCS7_ENC_CONTENT *enc_data; struct stack_st_PKCS7_RECIP_INFO *recipientinfo; } PKCS7_SIGN_ENVELOPE; typedef struct pkcs7_digest_st { ASN1_INTEGER *version; X509_ALGOR *md; struct pkcs7_st *contents; ASN1_OCTET_STRING *digest; } PKCS7_DIGEST; typedef struct pkcs7_encrypted_st { ASN1_INTEGER *version; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENCRYPT; typedef struct pkcs7_st { unsigned char *asn1; long length; int state; int detached; ASN1_OBJECT *type; union { char *ptr; ASN1_OCTET_STRING *data; PKCS7_SIGNED *sign; PKCS7_ENVELOPE *enveloped; PKCS7_SIGN_ENVELOPE *signed_and_enveloped; PKCS7_DIGEST *digest; PKCS7_ENCRYPT *encrypted; ASN1_TYPE *other; } d; } PKCS7; struct stack_st_PKCS7 { _STACK stack; }; # 279 "/usr/include/openssl/pkcs7.h" 3 4 PKCS7_ISSUER_AND_SERIAL *PKCS7_ISSUER_AND_SERIAL_new(void); void PKCS7_ISSUER_AND_SERIAL_free(PKCS7_ISSUER_AND_SERIAL *a); PKCS7_ISSUER_AND_SERIAL *d2i_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL **a, const unsigned char **in, long len); int i2d_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ISSUER_AND_SERIAL_it; int PKCS7_ISSUER_AND_SERIAL_digest(PKCS7_ISSUER_AND_SERIAL *data,const EVP_MD *type, unsigned char *md,unsigned int *len); PKCS7 *d2i_PKCS7_fp(FILE *fp,PKCS7 **p7); int i2d_PKCS7_fp(FILE *fp,PKCS7 *p7); PKCS7 *PKCS7_dup(PKCS7 *p7); PKCS7 *d2i_PKCS7_bio(BIO *bp,PKCS7 **p7); int i2d_PKCS7_bio(BIO *bp,PKCS7 *p7); int i2d_PKCS7_bio_stream(BIO *out, PKCS7 *p7, BIO *in, int flags); int PEM_write_bio_PKCS7_stream(BIO *out, PKCS7 *p7, BIO *in, int flags); PKCS7_SIGNER_INFO *PKCS7_SIGNER_INFO_new(void); void PKCS7_SIGNER_INFO_free(PKCS7_SIGNER_INFO *a); PKCS7_SIGNER_INFO *d2i_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO **a, const unsigned char **in, long len); int i2d_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGNER_INFO_it; PKCS7_RECIP_INFO *PKCS7_RECIP_INFO_new(void); void PKCS7_RECIP_INFO_free(PKCS7_RECIP_INFO *a); PKCS7_RECIP_INFO *d2i_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO **a, const unsigned char **in, long len); int i2d_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS7_RECIP_INFO_it; PKCS7_SIGNED *PKCS7_SIGNED_new(void); void PKCS7_SIGNED_free(PKCS7_SIGNED *a); PKCS7_SIGNED *d2i_PKCS7_SIGNED(PKCS7_SIGNED **a, const unsigned char **in, long len); int i2d_PKCS7_SIGNED(PKCS7_SIGNED *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGNED_it; PKCS7_ENC_CONTENT *PKCS7_ENC_CONTENT_new(void); void PKCS7_ENC_CONTENT_free(PKCS7_ENC_CONTENT *a); PKCS7_ENC_CONTENT *d2i_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT **a, const unsigned char **in, long len); int i2d_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENC_CONTENT_it; PKCS7_ENVELOPE *PKCS7_ENVELOPE_new(void); void PKCS7_ENVELOPE_free(PKCS7_ENVELOPE *a); PKCS7_ENVELOPE *d2i_PKCS7_ENVELOPE(PKCS7_ENVELOPE **a, const unsigned char **in, long len); int i2d_PKCS7_ENVELOPE(PKCS7_ENVELOPE *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENVELOPE_it; PKCS7_SIGN_ENVELOPE *PKCS7_SIGN_ENVELOPE_new(void); void PKCS7_SIGN_ENVELOPE_free(PKCS7_SIGN_ENVELOPE *a); PKCS7_SIGN_ENVELOPE *d2i_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE **a, const unsigned char **in, long len); int i2d_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGN_ENVELOPE_it; PKCS7_DIGEST *PKCS7_DIGEST_new(void); void PKCS7_DIGEST_free(PKCS7_DIGEST *a); PKCS7_DIGEST *d2i_PKCS7_DIGEST(PKCS7_DIGEST **a, const unsigned char **in, long len); int i2d_PKCS7_DIGEST(PKCS7_DIGEST *a, unsigned char **out); extern const ASN1_ITEM PKCS7_DIGEST_it; PKCS7_ENCRYPT *PKCS7_ENCRYPT_new(void); void PKCS7_ENCRYPT_free(PKCS7_ENCRYPT *a); PKCS7_ENCRYPT *d2i_PKCS7_ENCRYPT(PKCS7_ENCRYPT **a, const unsigned char **in, long len); int i2d_PKCS7_ENCRYPT(PKCS7_ENCRYPT *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENCRYPT_it; PKCS7 *PKCS7_new(void); void PKCS7_free(PKCS7 *a); PKCS7 *d2i_PKCS7(PKCS7 **a, const unsigned char **in, long len); int i2d_PKCS7(PKCS7 *a, unsigned char **out); extern const ASN1_ITEM PKCS7_it; extern const ASN1_ITEM PKCS7_ATTR_SIGN_it; extern const ASN1_ITEM PKCS7_ATTR_VERIFY_it; int i2d_PKCS7_NDEF(PKCS7 *a, unsigned char **out); int PKCS7_print_ctx(BIO *out, PKCS7 *x, int indent, const ASN1_PCTX *pctx); long PKCS7_ctrl(PKCS7 *p7, int cmd, long larg, char *parg); int PKCS7_set_type(PKCS7 *p7, int type); int PKCS7_set0_type_other(PKCS7 *p7, int type, ASN1_TYPE *other); int PKCS7_set_content(PKCS7 *p7, PKCS7 *p7_data); int PKCS7_SIGNER_INFO_set(PKCS7_SIGNER_INFO *p7i, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst); int PKCS7_SIGNER_INFO_sign(PKCS7_SIGNER_INFO *si); int PKCS7_add_signer(PKCS7 *p7, PKCS7_SIGNER_INFO *p7i); int PKCS7_add_certificate(PKCS7 *p7, X509 *x509); int PKCS7_add_crl(PKCS7 *p7, X509_CRL *x509); int PKCS7_content_new(PKCS7 *p7, int nid); int PKCS7_dataVerify(X509_STORE *cert_store, X509_STORE_CTX *ctx, BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si); int PKCS7_signatureVerify(BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si, X509 *x509); BIO *PKCS7_dataInit(PKCS7 *p7, BIO *bio); int PKCS7_dataFinal(PKCS7 *p7, BIO *bio); BIO *PKCS7_dataDecode(PKCS7 *p7, EVP_PKEY *pkey, BIO *in_bio, X509 *pcert); PKCS7_SIGNER_INFO *PKCS7_add_signature(PKCS7 *p7, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst); X509 *PKCS7_cert_from_signer_info(PKCS7 *p7, PKCS7_SIGNER_INFO *si); int PKCS7_set_digest(PKCS7 *p7, const EVP_MD *md); struct stack_st_PKCS7_SIGNER_INFO *PKCS7_get_signer_info(PKCS7 *p7); PKCS7_RECIP_INFO *PKCS7_add_recipient(PKCS7 *p7, X509 *x509); void PKCS7_SIGNER_INFO_get0_algs(PKCS7_SIGNER_INFO *si, EVP_PKEY **pk, X509_ALGOR **pdig, X509_ALGOR **psig); void PKCS7_RECIP_INFO_get0_alg(PKCS7_RECIP_INFO *ri, X509_ALGOR **penc); int PKCS7_add_recipient_info(PKCS7 *p7, PKCS7_RECIP_INFO *ri); int PKCS7_RECIP_INFO_set(PKCS7_RECIP_INFO *p7i, X509 *x509); int PKCS7_set_cipher(PKCS7 *p7, const EVP_CIPHER *cipher); int PKCS7_stream(unsigned char ***boundary, PKCS7 *p7); PKCS7_ISSUER_AND_SERIAL *PKCS7_get_issuer_and_serial(PKCS7 *p7, int idx); ASN1_OCTET_STRING *PKCS7_digest_from_attributes(struct stack_st_X509_ATTRIBUTE *sk); int PKCS7_add_signed_attribute(PKCS7_SIGNER_INFO *p7si,int nid,int type, void *data); int PKCS7_add_attribute (PKCS7_SIGNER_INFO *p7si, int nid, int atrtype, void *value); ASN1_TYPE *PKCS7_get_attribute(PKCS7_SIGNER_INFO *si, int nid); ASN1_TYPE *PKCS7_get_signed_attribute(PKCS7_SIGNER_INFO *si, int nid); int PKCS7_set_signed_attributes(PKCS7_SIGNER_INFO *p7si, struct stack_st_X509_ATTRIBUTE *sk); int PKCS7_set_attributes(PKCS7_SIGNER_INFO *p7si,struct stack_st_X509_ATTRIBUTE *sk); PKCS7 *PKCS7_sign(X509 *signcert, EVP_PKEY *pkey, struct stack_st_X509 *certs, BIO *data, int flags); PKCS7_SIGNER_INFO *PKCS7_sign_add_signer(PKCS7 *p7, X509 *signcert, EVP_PKEY *pkey, const EVP_MD *md, int flags); int PKCS7_final(PKCS7 *p7, BIO *data, int flags); int PKCS7_verify(PKCS7 *p7, struct stack_st_X509 *certs, X509_STORE *store, BIO *indata, BIO *out, int flags); struct stack_st_X509 *PKCS7_get0_signers(PKCS7 *p7, struct stack_st_X509 *certs, int flags); PKCS7 *PKCS7_encrypt(struct stack_st_X509 *certs, BIO *in, const EVP_CIPHER *cipher, int flags); int PKCS7_decrypt(PKCS7 *p7, EVP_PKEY *pkey, X509 *cert, BIO *data, int flags); int PKCS7_add_attrib_smimecap(PKCS7_SIGNER_INFO *si, struct stack_st_X509_ALGOR *cap); struct stack_st_X509_ALGOR *PKCS7_get_smimecap(PKCS7_SIGNER_INFO *si); int PKCS7_simple_smimecap(struct stack_st_X509_ALGOR *sk, int nid, int arg); int PKCS7_add_attrib_content_type(PKCS7_SIGNER_INFO *si, ASN1_OBJECT *coid); int PKCS7_add0_attrib_signing_time(PKCS7_SIGNER_INFO *si, ASN1_TIME *t); int PKCS7_add1_attrib_digest(PKCS7_SIGNER_INFO *si, const unsigned char *md, int mdlen); int SMIME_write_PKCS7(BIO *bio, PKCS7 *p7, BIO *data, int flags); PKCS7 *SMIME_read_PKCS7(BIO *bio, BIO **bcont); BIO *BIO_new_PKCS7(BIO *out, PKCS7 *p7); void ERR_load_PKCS7_strings(void); # 592 "/usr/include/openssl/x509.h" 2 3 4 # 617 "/usr/include/openssl/x509.h" 3 4 void X509_CRL_set_default_method(const X509_CRL_METHOD *meth); X509_CRL_METHOD *X509_CRL_METHOD_new( int (*crl_init)(X509_CRL *crl), int (*crl_free)(X509_CRL *crl), int (*crl_lookup)(X509_CRL *crl, X509_REVOKED **ret, ASN1_INTEGER *ser, X509_NAME *issuer), int (*crl_verify)(X509_CRL *crl, EVP_PKEY *pk)); void X509_CRL_METHOD_free(X509_CRL_METHOD *m); void X509_CRL_set_meth_data(X509_CRL *crl, void *dat); void *X509_CRL_get_meth_data(X509_CRL *crl); const char *X509_verify_cert_error_string(long n); int X509_verify(X509 *a, EVP_PKEY *r); int X509_REQ_verify(X509_REQ *a, EVP_PKEY *r); int X509_CRL_verify(X509_CRL *a, EVP_PKEY *r); int NETSCAPE_SPKI_verify(NETSCAPE_SPKI *a, EVP_PKEY *r); NETSCAPE_SPKI * NETSCAPE_SPKI_b64_decode(const char *str, int len); char * NETSCAPE_SPKI_b64_encode(NETSCAPE_SPKI *x); EVP_PKEY *NETSCAPE_SPKI_get_pubkey(NETSCAPE_SPKI *x); int NETSCAPE_SPKI_set_pubkey(NETSCAPE_SPKI *x, EVP_PKEY *pkey); int NETSCAPE_SPKI_print(BIO *out, NETSCAPE_SPKI *spki); int X509_signature_print(BIO *bp,X509_ALGOR *alg, ASN1_STRING *sig); int X509_sign(X509 *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_REQ_sign(X509_REQ *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_CRL_sign(X509_CRL *x, EVP_PKEY *pkey, const EVP_MD *md); int NETSCAPE_SPKI_sign(NETSCAPE_SPKI *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_pubkey_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_CRL_digest(const X509_CRL *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_REQ_digest(const X509_REQ *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_NAME_digest(const X509_NAME *data,const EVP_MD *type, unsigned char *md, unsigned int *len); X509 *d2i_X509_fp(FILE *fp, X509 **x509); int i2d_X509_fp(FILE *fp,X509 *x509); X509_CRL *d2i_X509_CRL_fp(FILE *fp,X509_CRL **crl); int i2d_X509_CRL_fp(FILE *fp,X509_CRL *crl); X509_REQ *d2i_X509_REQ_fp(FILE *fp,X509_REQ **req); int i2d_X509_REQ_fp(FILE *fp,X509_REQ *req); RSA *d2i_RSAPrivateKey_fp(FILE *fp,RSA **rsa); int i2d_RSAPrivateKey_fp(FILE *fp,RSA *rsa); RSA *d2i_RSAPublicKey_fp(FILE *fp,RSA **rsa); int i2d_RSAPublicKey_fp(FILE *fp,RSA *rsa); RSA *d2i_RSA_PUBKEY_fp(FILE *fp,RSA **rsa); int i2d_RSA_PUBKEY_fp(FILE *fp,RSA *rsa); DSA *d2i_DSA_PUBKEY_fp(FILE *fp, DSA **dsa); int i2d_DSA_PUBKEY_fp(FILE *fp, DSA *dsa); DSA *d2i_DSAPrivateKey_fp(FILE *fp, DSA **dsa); int i2d_DSAPrivateKey_fp(FILE *fp, DSA *dsa); X509_SIG *d2i_PKCS8_fp(FILE *fp,X509_SIG **p8); int i2d_PKCS8_fp(FILE *fp,X509_SIG *p8); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_fp(FILE *fp, PKCS8_PRIV_KEY_INFO **p8inf); int i2d_PKCS8_PRIV_KEY_INFO_fp(FILE *fp,PKCS8_PRIV_KEY_INFO *p8inf); int i2d_PKCS8PrivateKeyInfo_fp(FILE *fp, EVP_PKEY *key); int i2d_PrivateKey_fp(FILE *fp, EVP_PKEY *pkey); EVP_PKEY *d2i_PrivateKey_fp(FILE *fp, EVP_PKEY **a); int i2d_PUBKEY_fp(FILE *fp, EVP_PKEY *pkey); EVP_PKEY *d2i_PUBKEY_fp(FILE *fp, EVP_PKEY **a); X509 *d2i_X509_bio(BIO *bp,X509 **x509); int i2d_X509_bio(BIO *bp,X509 *x509); X509_CRL *d2i_X509_CRL_bio(BIO *bp,X509_CRL **crl); int i2d_X509_CRL_bio(BIO *bp,X509_CRL *crl); X509_REQ *d2i_X509_REQ_bio(BIO *bp,X509_REQ **req); int i2d_X509_REQ_bio(BIO *bp,X509_REQ *req); RSA *d2i_RSAPrivateKey_bio(BIO *bp,RSA **rsa); int i2d_RSAPrivateKey_bio(BIO *bp,RSA *rsa); RSA *d2i_RSAPublicKey_bio(BIO *bp,RSA **rsa); int i2d_RSAPublicKey_bio(BIO *bp,RSA *rsa); RSA *d2i_RSA_PUBKEY_bio(BIO *bp,RSA **rsa); int i2d_RSA_PUBKEY_bio(BIO *bp,RSA *rsa); DSA *d2i_DSA_PUBKEY_bio(BIO *bp, DSA **dsa); int i2d_DSA_PUBKEY_bio(BIO *bp, DSA *dsa); DSA *d2i_DSAPrivateKey_bio(BIO *bp, DSA **dsa); int i2d_DSAPrivateKey_bio(BIO *bp, DSA *dsa); X509_SIG *d2i_PKCS8_bio(BIO *bp,X509_SIG **p8); int i2d_PKCS8_bio(BIO *bp,X509_SIG *p8); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_bio(BIO *bp, PKCS8_PRIV_KEY_INFO **p8inf); int i2d_PKCS8_PRIV_KEY_INFO_bio(BIO *bp,PKCS8_PRIV_KEY_INFO *p8inf); int i2d_PKCS8PrivateKeyInfo_bio(BIO *bp, EVP_PKEY *key); int i2d_PrivateKey_bio(BIO *bp, EVP_PKEY *pkey); EVP_PKEY *d2i_PrivateKey_bio(BIO *bp, EVP_PKEY **a); int i2d_PUBKEY_bio(BIO *bp, EVP_PKEY *pkey); EVP_PKEY *d2i_PUBKEY_bio(BIO *bp, EVP_PKEY **a); X509 *X509_dup(X509 *x509); X509_ATTRIBUTE *X509_ATTRIBUTE_dup(X509_ATTRIBUTE *xa); X509_EXTENSION *X509_EXTENSION_dup(X509_EXTENSION *ex); X509_CRL *X509_CRL_dup(X509_CRL *crl); X509_REQ *X509_REQ_dup(X509_REQ *req); X509_ALGOR *X509_ALGOR_dup(X509_ALGOR *xn); int X509_ALGOR_set0(X509_ALGOR *alg, ASN1_OBJECT *aobj, int ptype, void *pval); void X509_ALGOR_get0(ASN1_OBJECT **paobj, int *pptype, void **ppval, X509_ALGOR *algor); X509_NAME *X509_NAME_dup(X509_NAME *xn); X509_NAME_ENTRY *X509_NAME_ENTRY_dup(X509_NAME_ENTRY *ne); int X509_cmp_time(const ASN1_TIME *s, time_t *t); int X509_cmp_current_time(const ASN1_TIME *s); ASN1_TIME * X509_time_adj(ASN1_TIME *s, long adj, time_t *t); ASN1_TIME * X509_time_adj_ex(ASN1_TIME *s, int offset_day, long offset_sec, time_t *t); ASN1_TIME * X509_gmtime_adj(ASN1_TIME *s, long adj); const char * X509_get_default_cert_area(void ); const char * X509_get_default_cert_dir(void ); const char * X509_get_default_cert_file(void ); const char * X509_get_default_cert_dir_env(void ); const char * X509_get_default_cert_file_env(void ); const char * X509_get_default_private_dir(void ); X509_REQ * X509_to_X509_REQ(X509 *x, EVP_PKEY *pkey, const EVP_MD *md); X509 * X509_REQ_to_X509(X509_REQ *r, int days,EVP_PKEY *pkey); X509_ALGOR *X509_ALGOR_new(void); void X509_ALGOR_free(X509_ALGOR *a); X509_ALGOR *d2i_X509_ALGOR(X509_ALGOR **a, const unsigned char **in, long len); int i2d_X509_ALGOR(X509_ALGOR *a, unsigned char **out); extern const ASN1_ITEM X509_ALGOR_it; X509_ALGORS *d2i_X509_ALGORS(X509_ALGORS **a, const unsigned char **in, long len); int i2d_X509_ALGORS(X509_ALGORS *a, unsigned char **out); extern const ASN1_ITEM X509_ALGORS_it; X509_VAL *X509_VAL_new(void); void X509_VAL_free(X509_VAL *a); X509_VAL *d2i_X509_VAL(X509_VAL **a, const unsigned char **in, long len); int i2d_X509_VAL(X509_VAL *a, unsigned char **out); extern const ASN1_ITEM X509_VAL_it; X509_PUBKEY *X509_PUBKEY_new(void); void X509_PUBKEY_free(X509_PUBKEY *a); X509_PUBKEY *d2i_X509_PUBKEY(X509_PUBKEY **a, const unsigned char **in, long len); int i2d_X509_PUBKEY(X509_PUBKEY *a, unsigned char **out); extern const ASN1_ITEM X509_PUBKEY_it; int X509_PUBKEY_set(X509_PUBKEY **x, EVP_PKEY *pkey); EVP_PKEY * X509_PUBKEY_get(X509_PUBKEY *key); int X509_get_pubkey_parameters(EVP_PKEY *pkey, struct stack_st_X509 *chain); int i2d_PUBKEY(EVP_PKEY *a,unsigned char **pp); EVP_PKEY * d2i_PUBKEY(EVP_PKEY **a,const unsigned char **pp, long length); int i2d_RSA_PUBKEY(RSA *a,unsigned char **pp); RSA * d2i_RSA_PUBKEY(RSA **a,const unsigned char **pp, long length); int i2d_DSA_PUBKEY(DSA *a,unsigned char **pp); DSA * d2i_DSA_PUBKEY(DSA **a,const unsigned char **pp, long length); X509_SIG *X509_SIG_new(void); void X509_SIG_free(X509_SIG *a); X509_SIG *d2i_X509_SIG(X509_SIG **a, const unsigned char **in, long len); int i2d_X509_SIG(X509_SIG *a, unsigned char **out); extern const ASN1_ITEM X509_SIG_it; X509_REQ_INFO *X509_REQ_INFO_new(void); void X509_REQ_INFO_free(X509_REQ_INFO *a); X509_REQ_INFO *d2i_X509_REQ_INFO(X509_REQ_INFO **a, const unsigned char **in, long len); int i2d_X509_REQ_INFO(X509_REQ_INFO *a, unsigned char **out); extern const ASN1_ITEM X509_REQ_INFO_it; X509_REQ *X509_REQ_new(void); void X509_REQ_free(X509_REQ *a); X509_REQ *d2i_X509_REQ(X509_REQ **a, const unsigned char **in, long len); int i2d_X509_REQ(X509_REQ *a, unsigned char **out); extern const ASN1_ITEM X509_REQ_it; X509_ATTRIBUTE *X509_ATTRIBUTE_new(void); void X509_ATTRIBUTE_free(X509_ATTRIBUTE *a); X509_ATTRIBUTE *d2i_X509_ATTRIBUTE(X509_ATTRIBUTE **a, const unsigned char **in, long len); int i2d_X509_ATTRIBUTE(X509_ATTRIBUTE *a, unsigned char **out); extern const ASN1_ITEM X509_ATTRIBUTE_it; X509_ATTRIBUTE *X509_ATTRIBUTE_create(int nid, int atrtype, void *value); X509_EXTENSION *X509_EXTENSION_new(void); void X509_EXTENSION_free(X509_EXTENSION *a); X509_EXTENSION *d2i_X509_EXTENSION(X509_EXTENSION **a, const unsigned char **in, long len); int i2d_X509_EXTENSION(X509_EXTENSION *a, unsigned char **out); extern const ASN1_ITEM X509_EXTENSION_it; X509_EXTENSIONS *d2i_X509_EXTENSIONS(X509_EXTENSIONS **a, const unsigned char **in, long len); int i2d_X509_EXTENSIONS(X509_EXTENSIONS *a, unsigned char **out); extern const ASN1_ITEM X509_EXTENSIONS_it; X509_NAME_ENTRY *X509_NAME_ENTRY_new(void); void X509_NAME_ENTRY_free(X509_NAME_ENTRY *a); X509_NAME_ENTRY *d2i_X509_NAME_ENTRY(X509_NAME_ENTRY **a, const unsigned char **in, long len); int i2d_X509_NAME_ENTRY(X509_NAME_ENTRY *a, unsigned char **out); extern const ASN1_ITEM X509_NAME_ENTRY_it; X509_NAME *X509_NAME_new(void); void X509_NAME_free(X509_NAME *a); X509_NAME *d2i_X509_NAME(X509_NAME **a, const unsigned char **in, long len); int i2d_X509_NAME(X509_NAME *a, unsigned char **out); extern const ASN1_ITEM X509_NAME_it; int X509_NAME_set(X509_NAME **xn, X509_NAME *name); X509_CINF *X509_CINF_new(void); void X509_CINF_free(X509_CINF *a); X509_CINF *d2i_X509_CINF(X509_CINF **a, const unsigned char **in, long len); int i2d_X509_CINF(X509_CINF *a, unsigned char **out); extern const ASN1_ITEM X509_CINF_it; X509 *X509_new(void); void X509_free(X509 *a); X509 *d2i_X509(X509 **a, const unsigned char **in, long len); int i2d_X509(X509 *a, unsigned char **out); extern const ASN1_ITEM X509_it; X509_CERT_AUX *X509_CERT_AUX_new(void); void X509_CERT_AUX_free(X509_CERT_AUX *a); X509_CERT_AUX *d2i_X509_CERT_AUX(X509_CERT_AUX **a, const unsigned char **in, long len); int i2d_X509_CERT_AUX(X509_CERT_AUX *a, unsigned char **out); extern const ASN1_ITEM X509_CERT_AUX_it; X509_CERT_PAIR *X509_CERT_PAIR_new(void); void X509_CERT_PAIR_free(X509_CERT_PAIR *a); X509_CERT_PAIR *d2i_X509_CERT_PAIR(X509_CERT_PAIR **a, const unsigned char **in, long len); int i2d_X509_CERT_PAIR(X509_CERT_PAIR *a, unsigned char **out); extern const ASN1_ITEM X509_CERT_PAIR_it; int X509_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int X509_set_ex_data(X509 *r, int idx, void *arg); void *X509_get_ex_data(X509 *r, int idx); int i2d_X509_AUX(X509 *a,unsigned char **pp); X509 * d2i_X509_AUX(X509 **a,const unsigned char **pp,long length); int X509_alias_set1(X509 *x, unsigned char *name, int len); int X509_keyid_set1(X509 *x, unsigned char *id, int len); unsigned char * X509_alias_get0(X509 *x, int *len); unsigned char * X509_keyid_get0(X509 *x, int *len); int (*X509_TRUST_set_default(int (*trust)(int , X509 *, int)))(int, X509 *, int); int X509_TRUST_set(int *t, int trust); int X509_add1_trust_object(X509 *x, ASN1_OBJECT *obj); int X509_add1_reject_object(X509 *x, ASN1_OBJECT *obj); void X509_trust_clear(X509 *x); void X509_reject_clear(X509 *x); X509_REVOKED *X509_REVOKED_new(void); void X509_REVOKED_free(X509_REVOKED *a); X509_REVOKED *d2i_X509_REVOKED(X509_REVOKED **a, const unsigned char **in, long len); int i2d_X509_REVOKED(X509_REVOKED *a, unsigned char **out); extern const ASN1_ITEM X509_REVOKED_it; X509_CRL_INFO *X509_CRL_INFO_new(void); void X509_CRL_INFO_free(X509_CRL_INFO *a); X509_CRL_INFO *d2i_X509_CRL_INFO(X509_CRL_INFO **a, const unsigned char **in, long len); int i2d_X509_CRL_INFO(X509_CRL_INFO *a, unsigned char **out); extern const ASN1_ITEM X509_CRL_INFO_it; X509_CRL *X509_CRL_new(void); void X509_CRL_free(X509_CRL *a); X509_CRL *d2i_X509_CRL(X509_CRL **a, const unsigned char **in, long len); int i2d_X509_CRL(X509_CRL *a, unsigned char **out); extern const ASN1_ITEM X509_CRL_it; int X509_CRL_add0_revoked(X509_CRL *crl, X509_REVOKED *rev); int X509_CRL_get0_by_serial(X509_CRL *crl, X509_REVOKED **ret, ASN1_INTEGER *serial); int X509_CRL_get0_by_cert(X509_CRL *crl, X509_REVOKED **ret, X509 *x); X509_PKEY * X509_PKEY_new(void ); void X509_PKEY_free(X509_PKEY *a); int i2d_X509_PKEY(X509_PKEY *a,unsigned char **pp); X509_PKEY * d2i_X509_PKEY(X509_PKEY **a,const unsigned char **pp,long length); NETSCAPE_SPKI *NETSCAPE_SPKI_new(void); void NETSCAPE_SPKI_free(NETSCAPE_SPKI *a); NETSCAPE_SPKI *d2i_NETSCAPE_SPKI(NETSCAPE_SPKI **a, const unsigned char **in, long len); int i2d_NETSCAPE_SPKI(NETSCAPE_SPKI *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_SPKI_it; NETSCAPE_SPKAC *NETSCAPE_SPKAC_new(void); void NETSCAPE_SPKAC_free(NETSCAPE_SPKAC *a); NETSCAPE_SPKAC *d2i_NETSCAPE_SPKAC(NETSCAPE_SPKAC **a, const unsigned char **in, long len); int i2d_NETSCAPE_SPKAC(NETSCAPE_SPKAC *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_SPKAC_it; NETSCAPE_CERT_SEQUENCE *NETSCAPE_CERT_SEQUENCE_new(void); void NETSCAPE_CERT_SEQUENCE_free(NETSCAPE_CERT_SEQUENCE *a); NETSCAPE_CERT_SEQUENCE *d2i_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE **a, const unsigned char **in, long len); int i2d_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_CERT_SEQUENCE_it; X509_INFO * X509_INFO_new(void); void X509_INFO_free(X509_INFO *a); char * X509_NAME_oneline(X509_NAME *a,char *buf,int size); int ASN1_verify(i2d_of_void *i2d, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,char *data,EVP_PKEY *pkey); int ASN1_digest(i2d_of_void *i2d,const EVP_MD *type,char *data, unsigned char *md,unsigned int *len); int ASN1_sign(i2d_of_void *i2d, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, char *data,EVP_PKEY *pkey, const EVP_MD *type); int ASN1_item_digest(const ASN1_ITEM *it,const EVP_MD *type,void *data, unsigned char *md,unsigned int *len); int ASN1_item_verify(const ASN1_ITEM *it, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,void *data,EVP_PKEY *pkey); int ASN1_item_sign(const ASN1_ITEM *it, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, void *data, EVP_PKEY *pkey, const EVP_MD *type); int X509_set_version(X509 *x,long version); int X509_set_serialNumber(X509 *x, ASN1_INTEGER *serial); ASN1_INTEGER * X509_get_serialNumber(X509 *x); int X509_set_issuer_name(X509 *x, X509_NAME *name); X509_NAME * X509_get_issuer_name(X509 *a); int X509_set_subject_name(X509 *x, X509_NAME *name); X509_NAME * X509_get_subject_name(X509 *a); int X509_set_notBefore(X509 *x, const ASN1_TIME *tm); int X509_set_notAfter(X509 *x, const ASN1_TIME *tm); int X509_set_pubkey(X509 *x, EVP_PKEY *pkey); EVP_PKEY * X509_get_pubkey(X509 *x); ASN1_BIT_STRING * X509_get0_pubkey_bitstr(const X509 *x); int X509_certificate_type(X509 *x,EVP_PKEY *pubkey ); int X509_REQ_set_version(X509_REQ *x,long version); int X509_REQ_set_subject_name(X509_REQ *req,X509_NAME *name); int X509_REQ_set_pubkey(X509_REQ *x, EVP_PKEY *pkey); EVP_PKEY * X509_REQ_get_pubkey(X509_REQ *req); int X509_REQ_extension_nid(int nid); int * X509_REQ_get_extension_nids(void); void X509_REQ_set_extension_nids(int *nids); struct stack_st_X509_EXTENSION *X509_REQ_get_extensions(X509_REQ *req); int X509_REQ_add_extensions_nid(X509_REQ *req, struct stack_st_X509_EXTENSION *exts, int nid); int X509_REQ_add_extensions(X509_REQ *req, struct stack_st_X509_EXTENSION *exts); int X509_REQ_get_attr_count(const X509_REQ *req); int X509_REQ_get_attr_by_NID(const X509_REQ *req, int nid, int lastpos); int X509_REQ_get_attr_by_OBJ(const X509_REQ *req, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *X509_REQ_get_attr(const X509_REQ *req, int loc); X509_ATTRIBUTE *X509_REQ_delete_attr(X509_REQ *req, int loc); int X509_REQ_add1_attr(X509_REQ *req, X509_ATTRIBUTE *attr); int X509_REQ_add1_attr_by_OBJ(X509_REQ *req, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); int X509_REQ_add1_attr_by_NID(X509_REQ *req, int nid, int type, const unsigned char *bytes, int len); int X509_REQ_add1_attr_by_txt(X509_REQ *req, const char *attrname, int type, const unsigned char *bytes, int len); int X509_CRL_set_version(X509_CRL *x, long version); int X509_CRL_set_issuer_name(X509_CRL *x, X509_NAME *name); int X509_CRL_set_lastUpdate(X509_CRL *x, const ASN1_TIME *tm); int X509_CRL_set_nextUpdate(X509_CRL *x, const ASN1_TIME *tm); int X509_CRL_sort(X509_CRL *crl); int X509_REVOKED_set_serialNumber(X509_REVOKED *x, ASN1_INTEGER *serial); int X509_REVOKED_set_revocationDate(X509_REVOKED *r, ASN1_TIME *tm); int X509_REQ_check_private_key(X509_REQ *x509,EVP_PKEY *pkey); int X509_check_private_key(X509 *x509,EVP_PKEY *pkey); int X509_issuer_and_serial_cmp(const X509 *a, const X509 *b); unsigned long X509_issuer_and_serial_hash(X509 *a); int X509_issuer_name_cmp(const X509 *a, const X509 *b); unsigned long X509_issuer_name_hash(X509 *a); int X509_subject_name_cmp(const X509 *a, const X509 *b); unsigned long X509_subject_name_hash(X509 *x); unsigned long X509_issuer_name_hash_old(X509 *a); unsigned long X509_subject_name_hash_old(X509 *x); int X509_cmp(const X509 *a, const X509 *b); int X509_NAME_cmp(const X509_NAME *a, const X509_NAME *b); unsigned long X509_NAME_hash(X509_NAME *x); unsigned long X509_NAME_hash_old(X509_NAME *x); int X509_CRL_cmp(const X509_CRL *a, const X509_CRL *b); int X509_CRL_match(const X509_CRL *a, const X509_CRL *b); int X509_print_ex_fp(FILE *bp,X509 *x, unsigned long nmflag, unsigned long cflag); int X509_print_fp(FILE *bp,X509 *x); int X509_CRL_print_fp(FILE *bp,X509_CRL *x); int X509_REQ_print_fp(FILE *bp,X509_REQ *req); int X509_NAME_print_ex_fp(FILE *fp, X509_NAME *nm, int indent, unsigned long flags); int X509_NAME_print(BIO *bp, X509_NAME *name, int obase); int X509_NAME_print_ex(BIO *out, X509_NAME *nm, int indent, unsigned long flags); int X509_print_ex(BIO *bp,X509 *x, unsigned long nmflag, unsigned long cflag); int X509_print(BIO *bp,X509 *x); int X509_ocspid_print(BIO *bp,X509 *x); int X509_CERT_AUX_print(BIO *bp,X509_CERT_AUX *x, int indent); int X509_CRL_print(BIO *bp,X509_CRL *x); int X509_REQ_print_ex(BIO *bp, X509_REQ *x, unsigned long nmflag, unsigned long cflag); int X509_REQ_print(BIO *bp,X509_REQ *req); int X509_NAME_entry_count(X509_NAME *name); int X509_NAME_get_text_by_NID(X509_NAME *name, int nid, char *buf,int len); int X509_NAME_get_text_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, char *buf,int len); int X509_NAME_get_index_by_NID(X509_NAME *name,int nid,int lastpos); int X509_NAME_get_index_by_OBJ(X509_NAME *name,ASN1_OBJECT *obj, int lastpos); X509_NAME_ENTRY *X509_NAME_get_entry(X509_NAME *name, int loc); X509_NAME_ENTRY *X509_NAME_delete_entry(X509_NAME *name, int loc); int X509_NAME_add_entry(X509_NAME *name,X509_NAME_ENTRY *ne, int loc, int set); int X509_NAME_add_entry_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, int type, unsigned char *bytes, int len, int loc, int set); int X509_NAME_add_entry_by_NID(X509_NAME *name, int nid, int type, unsigned char *bytes, int len, int loc, int set); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_txt(X509_NAME_ENTRY **ne, const char *field, int type, const unsigned char *bytes, int len); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_NID(X509_NAME_ENTRY **ne, int nid, int type,unsigned char *bytes, int len); int X509_NAME_add_entry_by_txt(X509_NAME *name, const char *field, int type, const unsigned char *bytes, int len, int loc, int set); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_OBJ(X509_NAME_ENTRY **ne, ASN1_OBJECT *obj, int type,const unsigned char *bytes, int len); int X509_NAME_ENTRY_set_object(X509_NAME_ENTRY *ne, ASN1_OBJECT *obj); int X509_NAME_ENTRY_set_data(X509_NAME_ENTRY *ne, int type, const unsigned char *bytes, int len); ASN1_OBJECT * X509_NAME_ENTRY_get_object(X509_NAME_ENTRY *ne); ASN1_STRING * X509_NAME_ENTRY_get_data(X509_NAME_ENTRY *ne); int X509v3_get_ext_count(const struct stack_st_X509_EXTENSION *x); int X509v3_get_ext_by_NID(const struct stack_st_X509_EXTENSION *x, int nid, int lastpos); int X509v3_get_ext_by_OBJ(const struct stack_st_X509_EXTENSION *x, ASN1_OBJECT *obj,int lastpos); int X509v3_get_ext_by_critical(const struct stack_st_X509_EXTENSION *x, int crit, int lastpos); X509_EXTENSION *X509v3_get_ext(const struct stack_st_X509_EXTENSION *x, int loc); X509_EXTENSION *X509v3_delete_ext(struct stack_st_X509_EXTENSION *x, int loc); struct stack_st_X509_EXTENSION *X509v3_add_ext(struct stack_st_X509_EXTENSION **x, X509_EXTENSION *ex, int loc); int X509_get_ext_count(X509 *x); int X509_get_ext_by_NID(X509 *x, int nid, int lastpos); int X509_get_ext_by_OBJ(X509 *x,ASN1_OBJECT *obj,int lastpos); int X509_get_ext_by_critical(X509 *x, int crit, int lastpos); X509_EXTENSION *X509_get_ext(X509 *x, int loc); X509_EXTENSION *X509_delete_ext(X509 *x, int loc); int X509_add_ext(X509 *x, X509_EXTENSION *ex, int loc); void * X509_get_ext_d2i(X509 *x, int nid, int *crit, int *idx); int X509_add1_ext_i2d(X509 *x, int nid, void *value, int crit, unsigned long flags); int X509_CRL_get_ext_count(X509_CRL *x); int X509_CRL_get_ext_by_NID(X509_CRL *x, int nid, int lastpos); int X509_CRL_get_ext_by_OBJ(X509_CRL *x,ASN1_OBJECT *obj,int lastpos); int X509_CRL_get_ext_by_critical(X509_CRL *x, int crit, int lastpos); X509_EXTENSION *X509_CRL_get_ext(X509_CRL *x, int loc); X509_EXTENSION *X509_CRL_delete_ext(X509_CRL *x, int loc); int X509_CRL_add_ext(X509_CRL *x, X509_EXTENSION *ex, int loc); void * X509_CRL_get_ext_d2i(X509_CRL *x, int nid, int *crit, int *idx); int X509_CRL_add1_ext_i2d(X509_CRL *x, int nid, void *value, int crit, unsigned long flags); int X509_REVOKED_get_ext_count(X509_REVOKED *x); int X509_REVOKED_get_ext_by_NID(X509_REVOKED *x, int nid, int lastpos); int X509_REVOKED_get_ext_by_OBJ(X509_REVOKED *x,ASN1_OBJECT *obj,int lastpos); int X509_REVOKED_get_ext_by_critical(X509_REVOKED *x, int crit, int lastpos); X509_EXTENSION *X509_REVOKED_get_ext(X509_REVOKED *x, int loc); X509_EXTENSION *X509_REVOKED_delete_ext(X509_REVOKED *x, int loc); int X509_REVOKED_add_ext(X509_REVOKED *x, X509_EXTENSION *ex, int loc); void * X509_REVOKED_get_ext_d2i(X509_REVOKED *x, int nid, int *crit, int *idx); int X509_REVOKED_add1_ext_i2d(X509_REVOKED *x, int nid, void *value, int crit, unsigned long flags); X509_EXTENSION *X509_EXTENSION_create_by_NID(X509_EXTENSION **ex, int nid, int crit, ASN1_OCTET_STRING *data); X509_EXTENSION *X509_EXTENSION_create_by_OBJ(X509_EXTENSION **ex, ASN1_OBJECT *obj,int crit,ASN1_OCTET_STRING *data); int X509_EXTENSION_set_object(X509_EXTENSION *ex,ASN1_OBJECT *obj); int X509_EXTENSION_set_critical(X509_EXTENSION *ex, int crit); int X509_EXTENSION_set_data(X509_EXTENSION *ex, ASN1_OCTET_STRING *data); ASN1_OBJECT * X509_EXTENSION_get_object(X509_EXTENSION *ex); ASN1_OCTET_STRING *X509_EXTENSION_get_data(X509_EXTENSION *ne); int X509_EXTENSION_get_critical(X509_EXTENSION *ex); int X509at_get_attr_count(const struct stack_st_X509_ATTRIBUTE *x); int X509at_get_attr_by_NID(const struct stack_st_X509_ATTRIBUTE *x, int nid, int lastpos); int X509at_get_attr_by_OBJ(const struct stack_st_X509_ATTRIBUTE *sk, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *X509at_get_attr(const struct stack_st_X509_ATTRIBUTE *x, int loc); X509_ATTRIBUTE *X509at_delete_attr(struct stack_st_X509_ATTRIBUTE *x, int loc); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr(struct stack_st_X509_ATTRIBUTE **x, X509_ATTRIBUTE *attr); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_OBJ(struct stack_st_X509_ATTRIBUTE **x, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_NID(struct stack_st_X509_ATTRIBUTE **x, int nid, int type, const unsigned char *bytes, int len); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_txt(struct stack_st_X509_ATTRIBUTE **x, const char *attrname, int type, const unsigned char *bytes, int len); void *X509at_get0_data_by_OBJ(struct stack_st_X509_ATTRIBUTE *x, ASN1_OBJECT *obj, int lastpos, int type); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_NID(X509_ATTRIBUTE **attr, int nid, int atrtype, const void *data, int len); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_OBJ(X509_ATTRIBUTE **attr, const ASN1_OBJECT *obj, int atrtype, const void *data, int len); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_txt(X509_ATTRIBUTE **attr, const char *atrname, int type, const unsigned char *bytes, int len); int X509_ATTRIBUTE_set1_object(X509_ATTRIBUTE *attr, const ASN1_OBJECT *obj); int X509_ATTRIBUTE_set1_data(X509_ATTRIBUTE *attr, int attrtype, const void *data, int len); void *X509_ATTRIBUTE_get0_data(X509_ATTRIBUTE *attr, int idx, int atrtype, void *data); int X509_ATTRIBUTE_count(X509_ATTRIBUTE *attr); ASN1_OBJECT *X509_ATTRIBUTE_get0_object(X509_ATTRIBUTE *attr); ASN1_TYPE *X509_ATTRIBUTE_get0_type(X509_ATTRIBUTE *attr, int idx); int EVP_PKEY_get_attr_count(const EVP_PKEY *key); int EVP_PKEY_get_attr_by_NID(const EVP_PKEY *key, int nid, int lastpos); int EVP_PKEY_get_attr_by_OBJ(const EVP_PKEY *key, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *EVP_PKEY_get_attr(const EVP_PKEY *key, int loc); X509_ATTRIBUTE *EVP_PKEY_delete_attr(EVP_PKEY *key, int loc); int EVP_PKEY_add1_attr(EVP_PKEY *key, X509_ATTRIBUTE *attr); int EVP_PKEY_add1_attr_by_OBJ(EVP_PKEY *key, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); int EVP_PKEY_add1_attr_by_NID(EVP_PKEY *key, int nid, int type, const unsigned char *bytes, int len); int EVP_PKEY_add1_attr_by_txt(EVP_PKEY *key, const char *attrname, int type, const unsigned char *bytes, int len); int X509_verify_cert(X509_STORE_CTX *ctx); X509 *X509_find_by_issuer_and_serial(struct stack_st_X509 *sk,X509_NAME *name, ASN1_INTEGER *serial); X509 *X509_find_by_subject(struct stack_st_X509 *sk,X509_NAME *name); PBEPARAM *PBEPARAM_new(void); void PBEPARAM_free(PBEPARAM *a); PBEPARAM *d2i_PBEPARAM(PBEPARAM **a, const unsigned char **in, long len); int i2d_PBEPARAM(PBEPARAM *a, unsigned char **out); extern const ASN1_ITEM PBEPARAM_it; PBE2PARAM *PBE2PARAM_new(void); void PBE2PARAM_free(PBE2PARAM *a); PBE2PARAM *d2i_PBE2PARAM(PBE2PARAM **a, const unsigned char **in, long len); int i2d_PBE2PARAM(PBE2PARAM *a, unsigned char **out); extern const ASN1_ITEM PBE2PARAM_it; PBKDF2PARAM *PBKDF2PARAM_new(void); void PBKDF2PARAM_free(PBKDF2PARAM *a); PBKDF2PARAM *d2i_PBKDF2PARAM(PBKDF2PARAM **a, const unsigned char **in, long len); int i2d_PBKDF2PARAM(PBKDF2PARAM *a, unsigned char **out); extern const ASN1_ITEM PBKDF2PARAM_it; int PKCS5_pbe_set0_algor(X509_ALGOR *algor, int alg, int iter, const unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe_set(int alg, int iter, const unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe2_set(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe2_set_iv(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen, unsigned char *aiv, int prf_nid); PKCS8_PRIV_KEY_INFO *PKCS8_PRIV_KEY_INFO_new(void); void PKCS8_PRIV_KEY_INFO_free(PKCS8_PRIV_KEY_INFO *a); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO **a, const unsigned char **in, long len); int i2d_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS8_PRIV_KEY_INFO_it; EVP_PKEY *EVP_PKCS82PKEY(PKCS8_PRIV_KEY_INFO *p8); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8(EVP_PKEY *pkey); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8_broken(EVP_PKEY *pkey, int broken); PKCS8_PRIV_KEY_INFO *PKCS8_set_broken(PKCS8_PRIV_KEY_INFO *p8, int broken); int PKCS8_pkey_set0(PKCS8_PRIV_KEY_INFO *priv, ASN1_OBJECT *aobj, int version, int ptype, void *pval, unsigned char *penc, int penclen); int PKCS8_pkey_get0(ASN1_OBJECT **ppkalg, const unsigned char **pk, int *ppklen, X509_ALGOR **pa, PKCS8_PRIV_KEY_INFO *p8); int X509_PUBKEY_set0_param(X509_PUBKEY *pub, ASN1_OBJECT *aobj, int ptype, void *pval, unsigned char *penc, int penclen); int X509_PUBKEY_get0_param(ASN1_OBJECT **ppkalg, const unsigned char **pk, int *ppklen, X509_ALGOR **pa, X509_PUBKEY *pub); int X509_check_trust(X509 *x, int id, int flags); int X509_TRUST_get_count(void); X509_TRUST * X509_TRUST_get0(int idx); int X509_TRUST_get_by_id(int id); int X509_TRUST_add(int id, int flags, int (*ck)(X509_TRUST *, X509 *, int), char *name, int arg1, void *arg2); void X509_TRUST_cleanup(void); int X509_TRUST_get_flags(X509_TRUST *xp); char *X509_TRUST_get0_name(X509_TRUST *xp); int X509_TRUST_get_trust(X509_TRUST *xp); void ERR_load_X509_strings(void); # 157 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/pem.h" 1 3 4 # 62 "/usr/include/openssl/pem.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/pem.h" 2 3 4 # 71 "/usr/include/openssl/pem.h" 3 4 # 1 "/usr/include/openssl/pem2.h" 1 3 4 # 72 "/usr/include/openssl/pem.h" 2 3 4 # 142 "/usr/include/openssl/pem.h" 3 4 typedef struct PEM_Encode_Seal_st { EVP_ENCODE_CTX encode; EVP_MD_CTX md; EVP_CIPHER_CTX cipher; } PEM_ENCODE_SEAL_CTX; typedef struct pem_recip_st { char *name; X509_NAME *dn; int cipher; int key_enc; } PEM_USER; typedef struct pem_ctx_st { int type; struct { int version; int mode; } proc_type; char *domain; struct { int cipher; } DEK_info; PEM_USER *originator; int num_recipient; PEM_USER **recipient; EVP_MD *md; int md_enc; int md_len; char *md_data; EVP_CIPHER *dec; int key_len; unsigned char *key; int data_enc; int data_len; unsigned char *data; } PEM_CTX; # 400 "/usr/include/openssl/pem.h" 3 4 typedef int pem_password_cb(char *buf, int size, int rwflag, void *userdata); int PEM_get_EVP_CIPHER_INFO(char *header, EVP_CIPHER_INFO *cipher); int PEM_do_header (EVP_CIPHER_INFO *cipher, unsigned char *data,long *len, pem_password_cb *callback,void *u); int PEM_read_bio(BIO *bp, char **name, char **header, unsigned char **data,long *len); int PEM_write_bio(BIO *bp,const char *name,char *hdr,unsigned char *data, long len); int PEM_bytes_read_bio(unsigned char **pdata, long *plen, char **pnm, const char *name, BIO *bp, pem_password_cb *cb, void *u); void * PEM_ASN1_read_bio(d2i_of_void *d2i, const char *name, BIO *bp, void **x, pem_password_cb *cb, void *u); int PEM_ASN1_write_bio(i2d_of_void *i2d,const char *name,BIO *bp, void *x, const EVP_CIPHER *enc,unsigned char *kstr,int klen, pem_password_cb *cb, void *u); struct stack_st_X509_INFO * PEM_X509_INFO_read_bio(BIO *bp, struct stack_st_X509_INFO *sk, pem_password_cb *cb, void *u); int PEM_X509_INFO_write_bio(BIO *bp,X509_INFO *xi, EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cd, void *u); int PEM_read(FILE *fp, char **name, char **header, unsigned char **data,long *len); int PEM_write(FILE *fp,char *name,char *hdr,unsigned char *data,long len); void * PEM_ASN1_read(d2i_of_void *d2i, const char *name, FILE *fp, void **x, pem_password_cb *cb, void *u); int PEM_ASN1_write(i2d_of_void *i2d,const char *name,FILE *fp, void *x,const EVP_CIPHER *enc,unsigned char *kstr, int klen,pem_password_cb *callback, void *u); struct stack_st_X509_INFO * PEM_X509_INFO_read(FILE *fp, struct stack_st_X509_INFO *sk, pem_password_cb *cb, void *u); int PEM_SealInit(PEM_ENCODE_SEAL_CTX *ctx, EVP_CIPHER *type, EVP_MD *md_type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk); void PEM_SealUpdate(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *out, int *outl, unsigned char *in, int inl); int PEM_SealFinal(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *sig,int *sigl, unsigned char *out, int *outl, EVP_PKEY *priv); void PEM_SignInit(EVP_MD_CTX *ctx, EVP_MD *type); void PEM_SignUpdate(EVP_MD_CTX *ctx,unsigned char *d,unsigned int cnt); int PEM_SignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, unsigned int *siglen, EVP_PKEY *pkey); int PEM_def_callback(char *buf, int num, int w, void *key); void PEM_proc_type(char *buf, int type); void PEM_dek_info(char *buf, const char *type, int len, char *str); X509 *PEM_read_bio_X509(BIO *bp, X509 **x, pem_password_cb *cb, void *u); X509 *PEM_read_X509(FILE *fp, X509 **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509(BIO *bp, X509 *x); int PEM_write_X509(FILE *fp, X509 *x); X509 *PEM_read_bio_X509_AUX(BIO *bp, X509 **x, pem_password_cb *cb, void *u); X509 *PEM_read_X509_AUX(FILE *fp, X509 **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_AUX(BIO *bp, X509 *x); int PEM_write_X509_AUX(FILE *fp, X509 *x); X509_CERT_PAIR *PEM_read_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR **x, pem_password_cb *cb, void *u); X509_CERT_PAIR *PEM_read_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR *x); int PEM_write_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR *x); X509_REQ *PEM_read_bio_X509_REQ(BIO *bp, X509_REQ **x, pem_password_cb *cb, void *u); X509_REQ *PEM_read_X509_REQ(FILE *fp, X509_REQ **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_REQ(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ(FILE *fp, X509_REQ *x); int PEM_write_bio_X509_REQ_NEW(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ_NEW(FILE *fp, X509_REQ *x); X509_CRL *PEM_read_bio_X509_CRL(BIO *bp, X509_CRL **x, pem_password_cb *cb, void *u); X509_CRL *PEM_read_X509_CRL(FILE *fp, X509_CRL **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CRL(BIO *bp, X509_CRL *x); int PEM_write_X509_CRL(FILE *fp, X509_CRL *x); PKCS7 *PEM_read_bio_PKCS7(BIO *bp, PKCS7 **x, pem_password_cb *cb, void *u); PKCS7 *PEM_read_PKCS7(FILE *fp, PKCS7 **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS7(BIO *bp, PKCS7 *x); int PEM_write_PKCS7(FILE *fp, PKCS7 *x); NETSCAPE_CERT_SEQUENCE *PEM_read_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE **x, pem_password_cb *cb, void *u); NETSCAPE_CERT_SEQUENCE *PEM_read_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE **x, pem_password_cb *cb, void *u); int PEM_write_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE *x); int PEM_write_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE *x); X509_SIG *PEM_read_bio_PKCS8(BIO *bp, X509_SIG **x, pem_password_cb *cb, void *u); X509_SIG *PEM_read_PKCS8(FILE *fp, X509_SIG **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8(BIO *bp, X509_SIG *x); int PEM_write_PKCS8(FILE *fp, X509_SIG *x); PKCS8_PRIV_KEY_INFO *PEM_read_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO **x, pem_password_cb *cb, void *u); PKCS8_PRIV_KEY_INFO *PEM_read_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO *x); int PEM_write_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO *x); RSA *PEM_read_bio_RSAPrivateKey(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPrivateKey(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPrivateKey(BIO *bp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_RSAPrivateKey(FILE *fp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); RSA *PEM_read_bio_RSAPublicKey(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPublicKey(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPublicKey(BIO *bp, const RSA *x); int PEM_write_RSAPublicKey(FILE *fp, const RSA *x); RSA *PEM_read_bio_RSA_PUBKEY(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSA_PUBKEY(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSA_PUBKEY(BIO *bp, RSA *x); int PEM_write_RSA_PUBKEY(FILE *fp, RSA *x); DSA *PEM_read_bio_DSAPrivateKey(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAPrivateKey(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAPrivateKey(BIO *bp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_DSAPrivateKey(FILE *fp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); DSA *PEM_read_bio_DSA_PUBKEY(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSA_PUBKEY(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSA_PUBKEY(BIO *bp, DSA *x); int PEM_write_DSA_PUBKEY(FILE *fp, DSA *x); DSA *PEM_read_bio_DSAparams(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAparams(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAparams(BIO *bp, const DSA *x); int PEM_write_DSAparams(FILE *fp, const DSA *x); DH *PEM_read_bio_DHparams(BIO *bp, DH **x, pem_password_cb *cb, void *u); DH *PEM_read_DHparams(FILE *fp, DH **x, pem_password_cb *cb, void *u); int PEM_write_bio_DHparams(BIO *bp, const DH *x); int PEM_write_DHparams(FILE *fp, const DH *x); EVP_PKEY *PEM_read_bio_PrivateKey(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PrivateKey(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_PrivateKey(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PrivateKey(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_bio_PUBKEY(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PUBKEY(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_PUBKEY(BIO *bp, EVP_PKEY *x); int PEM_write_PUBKEY(FILE *fp, EVP_PKEY *x); int PEM_write_bio_PKCS8PrivateKey_nid(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8PrivateKey(BIO *, EVP_PKEY *, const EVP_CIPHER *, char *, int, pem_password_cb *, void *); int i2d_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_nid_bio(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *d2i_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_nid_fp(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PKCS8PrivateKey_nid(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *d2i_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_PKCS8PrivateKey(FILE *fp,EVP_PKEY *x,const EVP_CIPHER *enc, char *kstr,int klen, pem_password_cb *cd, void *u); EVP_PKEY *PEM_read_bio_Parameters(BIO *bp, EVP_PKEY **x); int PEM_write_bio_Parameters(BIO *bp, EVP_PKEY *x); EVP_PKEY *b2i_PrivateKey(const unsigned char **in, long length); EVP_PKEY *b2i_PublicKey(const unsigned char **in, long length); EVP_PKEY *b2i_PrivateKey_bio(BIO *in); EVP_PKEY *b2i_PublicKey_bio(BIO *in); int i2b_PrivateKey_bio(BIO *out, EVP_PKEY *pk); int i2b_PublicKey_bio(BIO *out, EVP_PKEY *pk); EVP_PKEY *b2i_PVK_bio(BIO *in, pem_password_cb *cb, void *u); int i2b_PVK_bio(BIO *out, EVP_PKEY *pk, int enclevel, pem_password_cb *cb, void *u); void ERR_load_PEM_strings(void); # 163 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/hmac.h" 1 3 4 # 61 "/usr/include/openssl/hmac.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 62 "/usr/include/openssl/hmac.h" 2 3 4 # 75 "/usr/include/openssl/hmac.h" 3 4 typedef struct hmac_ctx_st { const EVP_MD *md; EVP_MD_CTX md_ctx; EVP_MD_CTX i_ctx; EVP_MD_CTX o_ctx; unsigned int key_length; unsigned char key[128]; } HMAC_CTX; void HMAC_CTX_init(HMAC_CTX *ctx); void HMAC_CTX_cleanup(HMAC_CTX *ctx); int HMAC_Init(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md); int HMAC_Init_ex(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md, ENGINE *impl); int HMAC_Update(HMAC_CTX *ctx, const unsigned char *data, size_t len); int HMAC_Final(HMAC_CTX *ctx, unsigned char *md, unsigned int *len); unsigned char *HMAC(const EVP_MD *evp_md, const void *key, int key_len, const unsigned char *d, size_t n, unsigned char *md, unsigned int *md_len); int HMAC_CTX_copy(HMAC_CTX *dctx, HMAC_CTX *sctx); void HMAC_CTX_set_flags(HMAC_CTX *ctx, unsigned long flags); # 164 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/kssl.h" 1 3 4 # 66 "/usr/include/openssl/kssl.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 29 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 30 "/usr/include/openssl/opensslconf.h" 2 3 4 # 67 "/usr/include/openssl/kssl.h" 2 3 4 # 1 "/usr/include/ctype.h" 1 3 4 # 30 "/usr/include/ctype.h" 3 4 # 48 "/usr/include/ctype.h" 3 4 enum { _ISupper = ((0) < 8 ? ((1 << (0)) << 8) : ((1 << (0)) >> 8)), _ISlower = ((1) < 8 ? ((1 << (1)) << 8) : ((1 << (1)) >> 8)), _ISalpha = ((2) < 8 ? ((1 << (2)) << 8) : ((1 << (2)) >> 8)), _ISdigit = ((3) < 8 ? ((1 << (3)) << 8) : ((1 << (3)) >> 8)), _ISxdigit = ((4) < 8 ? ((1 << (4)) << 8) : ((1 << (4)) >> 8)), _ISspace = ((5) < 8 ? ((1 << (5)) << 8) : ((1 << (5)) >> 8)), _ISprint = ((6) < 8 ? ((1 << (6)) << 8) : ((1 << (6)) >> 8)), _ISgraph = ((7) < 8 ? ((1 << (7)) << 8) : ((1 << (7)) >> 8)), _ISblank = ((8) < 8 ? ((1 << (8)) << 8) : ((1 << (8)) >> 8)), _IScntrl = ((9) < 8 ? ((1 << (9)) << 8) : ((1 << (9)) >> 8)), _ISpunct = ((10) < 8 ? ((1 << (10)) << 8) : ((1 << (10)) >> 8)), _ISalnum = ((11) < 8 ? ((1 << (11)) << 8) : ((1 << (11)) >> 8)) }; # 81 "/usr/include/ctype.h" 3 4 extern __const unsigned short int **__ctype_b_loc (void) __attribute__ ((__nothrow__)) __attribute__ ((__const)); extern __const __int32_t **__ctype_tolower_loc (void) __attribute__ ((__nothrow__)) __attribute__ ((__const)); extern __const __int32_t **__ctype_toupper_loc (void) __attribute__ ((__nothrow__)) __attribute__ ((__const)); # 96 "/usr/include/ctype.h" 3 4 extern int isalnum (int) __attribute__ ((__nothrow__)); extern int isalpha (int) __attribute__ ((__nothrow__)); extern int iscntrl (int) __attribute__ ((__nothrow__)); extern int isdigit (int) __attribute__ ((__nothrow__)); extern int islower (int) __attribute__ ((__nothrow__)); extern int isgraph (int) __attribute__ ((__nothrow__)); extern int isprint (int) __attribute__ ((__nothrow__)); extern int ispunct (int) __attribute__ ((__nothrow__)); extern int isspace (int) __attribute__ ((__nothrow__)); extern int isupper (int) __attribute__ ((__nothrow__)); extern int isxdigit (int) __attribute__ ((__nothrow__)); extern int tolower (int __c) __attribute__ ((__nothrow__)); extern int toupper (int __c) __attribute__ ((__nothrow__)); extern int isblank (int) __attribute__ ((__nothrow__)); # 142 "/usr/include/ctype.h" 3 4 extern int isascii (int __c) __attribute__ ((__nothrow__)); extern int toascii (int __c) __attribute__ ((__nothrow__)); extern int _toupper (int) __attribute__ ((__nothrow__)); extern int _tolower (int) __attribute__ ((__nothrow__)); # 247 "/usr/include/ctype.h" 3 4 extern int isalnum_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int isalpha_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int iscntrl_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int isdigit_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int islower_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int isgraph_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int isprint_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int ispunct_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int isspace_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int isupper_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int isxdigit_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int isblank_l (int, __locale_t) __attribute__ ((__nothrow__)); extern int __tolower_l (int __c, __locale_t __l) __attribute__ ((__nothrow__)); extern int tolower_l (int __c, __locale_t __l) __attribute__ ((__nothrow__)); extern int __toupper_l (int __c, __locale_t __l) __attribute__ ((__nothrow__)); extern int toupper_l (int __c, __locale_t __l) __attribute__ ((__nothrow__)); # 323 "/usr/include/ctype.h" 3 4 # 72 "/usr/include/openssl/kssl.h" 2 3 4 # 1 "/usr/include/krb5.h" 1 3 4 # 1 "/usr/include/krb5/krb5.h" 1 3 4 # 98 "/usr/include/krb5/krb5.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 1 3 4 # 34 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/syslimits.h" 1 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 1 3 4 # 168 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/bits/local_lim.h" 2 3 4 # 158 "/usr/include/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 169 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 2 3 4 # 8 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/syslimits.h" 2 3 4 # 35 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 2 3 4 # 99 "/usr/include/krb5/krb5.h" 2 3 4 # 111 "/usr/include/krb5/krb5.h" 3 4 # 126 "/usr/include/krb5/krb5.h" 3 4 struct _profile_t; # 137 "/usr/include/krb5/krb5.h" 3 4 typedef unsigned char krb5_octet; typedef short krb5_int16; typedef unsigned short krb5_ui_2; typedef int krb5_int32; typedef unsigned int krb5_ui_4; # 194 "/usr/include/krb5/krb5.h" 3 4 typedef unsigned int krb5_boolean; typedef unsigned int krb5_msgtype; typedef unsigned int krb5_kvno; typedef krb5_int32 krb5_addrtype; typedef krb5_int32 krb5_enctype; typedef krb5_int32 krb5_cksumtype; typedef krb5_int32 krb5_authdatatype; typedef krb5_int32 krb5_keyusage; typedef krb5_int32 krb5_cryptotype; typedef krb5_int32 krb5_preauthtype; typedef krb5_int32 krb5_flags; typedef krb5_int32 krb5_timestamp; typedef krb5_int32 krb5_error_code; typedef krb5_int32 krb5_deltat; typedef krb5_error_code krb5_magic; typedef struct _krb5_data { krb5_magic magic; unsigned int length; char *data; } krb5_data; typedef struct _krb5_octet_data { krb5_magic magic; unsigned int length; krb5_octet *data; } krb5_octet_data; # 234 "/usr/include/krb5/krb5.h" 3 4 typedef void * krb5_pointer; typedef void const * krb5_const_pointer; typedef struct krb5_principal_data { krb5_magic magic; krb5_data realm; krb5_data *data; krb5_int32 length; krb5_int32 type; } krb5_principal_data; typedef krb5_principal_data * krb5_principal; # 280 "/usr/include/krb5/krb5.h" 3 4 typedef const krb5_principal_data *krb5_const_principal; # 308 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_is_referral_realm(const krb5_data *r); # 318 "/usr/include/krb5/krb5.h" 3 4 const krb5_data * krb5_anonymous_realm(void); # 328 "/usr/include/krb5/krb5.h" 3 4 krb5_const_principal krb5_anonymous_principal(void); # 342 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_address { krb5_magic magic; krb5_addrtype addrtype; unsigned int length; krb5_octet *contents; } krb5_address; # 369 "/usr/include/krb5/krb5.h" 3 4 struct _krb5_context; typedef struct _krb5_context * krb5_context; struct _krb5_auth_context; typedef struct _krb5_auth_context * krb5_auth_context; struct _krb5_cryptosystem_entry; typedef struct _krb5_keyblock { krb5_magic magic; krb5_enctype enctype; unsigned int length; krb5_octet *contents; } krb5_keyblock; struct krb5_key_st; # 398 "/usr/include/krb5/krb5.h" 3 4 typedef struct krb5_key_st *krb5_key; typedef struct _krb5_encrypt_block { krb5_magic magic; krb5_enctype crypto_entry; krb5_keyblock *key; } krb5_encrypt_block; typedef struct _krb5_checksum { krb5_magic magic; krb5_cksumtype checksum_type; unsigned int length; krb5_octet *contents; } krb5_checksum; typedef struct _krb5_enc_data { krb5_magic magic; krb5_enctype enctype; krb5_kvno kvno; krb5_data ciphertext; } krb5_enc_data; # 434 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_crypto_iov { krb5_cryptotype flags; krb5_data data; } krb5_crypto_iov; # 490 "/usr/include/krb5/krb5.h" 3 4 enum { KRB5_C_RANDSOURCE_OLDAPI = 0, KRB5_C_RANDSOURCE_OSRAND = 1, KRB5_C_RANDSOURCE_TRUSTEDPARTY = 2, KRB5_C_RANDSOURCE_TIMING = 3, KRB5_C_RANDSOURCE_EXTERNAL_PROTOCOL = 4, KRB5_C_RANDSOURCE_MAX = 5 }; # 542 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_encrypt(krb5_context context, const krb5_keyblock *key, krb5_keyusage usage, const krb5_data *cipher_state, const krb5_data *input, krb5_enc_data *output); # 571 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_decrypt(krb5_context context, const krb5_keyblock *key, krb5_keyusage usage, const krb5_data *cipher_state, const krb5_enc_data *input, krb5_data *output); # 589 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_encrypt_length(krb5_context context, krb5_enctype enctype, size_t inputlen, size_t *length); # 602 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_block_size(krb5_context context, krb5_enctype enctype, size_t *blocksize); # 616 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_keylengths(krb5_context context, krb5_enctype enctype, size_t *keybytes, size_t *keylength); # 630 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_init_state(krb5_context context, const krb5_keyblock *key, krb5_keyusage usage, krb5_data *new_state); # 643 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_free_state(krb5_context context, const krb5_keyblock *key, krb5_data *state); # 662 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_prf(krb5_context context, const krb5_keyblock *keyblock, krb5_data *input, krb5_data *output); # 675 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_prf_length(krb5_context context, krb5_enctype enctype, size_t *len); # 696 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_fx_cf2_simple(krb5_context context, krb5_keyblock *k1, const char *pepper1, krb5_keyblock *k2, const char *pepper2, krb5_keyblock **out); # 714 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_make_random_key(krb5_context context, krb5_enctype enctype, krb5_keyblock *k5_random_key); # 736 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_random_to_key(krb5_context context, krb5_enctype enctype, krb5_data *random_data, krb5_keyblock *k5_random_key); # 753 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_random_add_entropy(krb5_context context, unsigned int randsource, const krb5_data *data); # 769 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_random_make_octets(krb5_context context, krb5_data *data); # 786 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_random_os_entropy(krb5_context context, int strong, int *success); krb5_error_code krb5_c_random_seed(krb5_context context, krb5_data *data); # 808 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_string_to_key(krb5_context context, krb5_enctype enctype, const krb5_data *string, const krb5_data *salt, krb5_keyblock *key); # 830 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_string_to_key_with_params(krb5_context context, krb5_enctype enctype, const krb5_data *string, const krb5_data *salt, const krb5_data *params, krb5_keyblock *key); # 851 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_enctype_compare(krb5_context context, krb5_enctype e1, krb5_enctype e2, krb5_boolean *similar); # 880 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_make_checksum(krb5_context context, krb5_cksumtype cksumtype, const krb5_keyblock *key, krb5_keyusage usage, const krb5_data *input, krb5_checksum *cksum); # 906 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_verify_checksum(krb5_context context, const krb5_keyblock *key, krb5_keyusage usage, const krb5_data *data, const krb5_checksum *cksum, krb5_boolean *valid); # 920 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_checksum_length(krb5_context context, krb5_cksumtype cksumtype, size_t *length); # 937 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_keyed_checksum_types(krb5_context context, krb5_enctype enctype, unsigned int *count, krb5_cksumtype **cksumtypes); # 1009 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_c_valid_enctype(krb5_enctype ktype); # 1019 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_c_valid_cksumtype(krb5_cksumtype ctype); # 1030 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_c_is_coll_proof_cksum(krb5_cksumtype ctype); # 1040 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_c_is_keyed_cksum(krb5_cksumtype ctype); # 1080 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_make_checksum_iov(krb5_context context, krb5_cksumtype cksumtype, const krb5_keyblock *key, krb5_keyusage usage, krb5_crypto_iov *data, size_t num_data); # 1107 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_verify_checksum_iov(krb5_context context, krb5_cksumtype cksumtype, const krb5_keyblock *key, krb5_keyusage usage, const krb5_crypto_iov *data, size_t num_data, krb5_boolean *valid); # 1143 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_encrypt_iov(krb5_context context, const krb5_keyblock *keyblock, krb5_keyusage usage, const krb5_data *cipher_state, krb5_crypto_iov *data, size_t num_data); # 1178 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_decrypt_iov(krb5_context context, const krb5_keyblock *keyblock, krb5_keyusage usage, const krb5_data *cipher_state, krb5_crypto_iov *data, size_t num_data); # 1193 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_crypto_length(krb5_context context, krb5_enctype enctype, krb5_cryptotype type, unsigned int *size); # 1212 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_crypto_length_iov(krb5_context context, krb5_enctype enctype, krb5_crypto_iov *data, size_t num_data); # 1229 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_padding_length(krb5_context context, krb5_enctype enctype, size_t data_length, unsigned int *size); # 1245 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_create_key(krb5_context context, const krb5_keyblock *key_data, krb5_key *out); void krb5_k_reference_key(krb5_context context, krb5_key key); void krb5_k_free_key(krb5_context context, krb5_key key); krb5_error_code krb5_k_key_keyblock(krb5_context context, krb5_key key, krb5_keyblock **key_data); krb5_enctype krb5_k_key_enctype(krb5_context context, krb5_key key); # 1289 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_encrypt(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *cipher_state, const krb5_data *input, krb5_enc_data *output); # 1324 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_encrypt_iov(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *cipher_state, krb5_crypto_iov *data, size_t num_data); # 1353 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_decrypt(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *cipher_state, const krb5_enc_data *input, krb5_data *output); # 1388 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_decrypt_iov(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *cipher_state, krb5_crypto_iov *data, size_t num_data); # 1417 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_make_checksum(krb5_context context, krb5_cksumtype cksumtype, krb5_key key, krb5_keyusage usage, const krb5_data *input, krb5_checksum *cksum); # 1443 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_make_checksum_iov(krb5_context context, krb5_cksumtype cksumtype, krb5_key key, krb5_keyusage usage, krb5_crypto_iov *data, size_t num_data); # 1469 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_verify_checksum(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *data, const krb5_checksum *cksum, krb5_boolean *valid); # 1496 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_verify_checksum_iov(krb5_context context, krb5_cksumtype cksumtype, krb5_key key, krb5_keyusage usage, const krb5_crypto_iov *data, size_t num_data, krb5_boolean *valid); # 1520 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_prf(krb5_context context, krb5_key key, krb5_data *input, krb5_data *output); krb5_error_code krb5_encrypt(krb5_context context, krb5_const_pointer inptr, krb5_pointer outptr, size_t size, krb5_encrypt_block *eblock, krb5_pointer ivec); krb5_error_code krb5_decrypt(krb5_context context, krb5_const_pointer inptr, krb5_pointer outptr, size_t size, krb5_encrypt_block *eblock, krb5_pointer ivec); krb5_error_code krb5_process_key(krb5_context context, krb5_encrypt_block *eblock, const krb5_keyblock * key); krb5_error_code krb5_finish_key(krb5_context context, krb5_encrypt_block * eblock); krb5_error_code krb5_string_to_key(krb5_context context, const krb5_encrypt_block *eblock, krb5_keyblock * keyblock, const krb5_data *data, const krb5_data *salt); krb5_error_code krb5_init_random_key(krb5_context context, const krb5_encrypt_block *eblock, const krb5_keyblock *keyblock, krb5_pointer *ptr); krb5_error_code krb5_finish_random_key(krb5_context context, const krb5_encrypt_block *eblock, krb5_pointer *ptr); krb5_error_code krb5_random_key(krb5_context context, const krb5_encrypt_block *eblock, krb5_pointer ptr, krb5_keyblock **keyblock); krb5_enctype krb5_eblock_enctype(krb5_context context, const krb5_encrypt_block *eblock); krb5_error_code krb5_use_enctype(krb5_context context, krb5_encrypt_block *eblock, krb5_enctype enctype); size_t krb5_encrypt_size(size_t length, krb5_enctype crypto); size_t krb5_checksum_size(krb5_context context, krb5_cksumtype ctype); krb5_error_code krb5_calculate_checksum(krb5_context context, krb5_cksumtype ctype, krb5_const_pointer in, size_t in_length, krb5_const_pointer seed, size_t seed_length, krb5_checksum * outcksum); krb5_error_code krb5_verify_checksum(krb5_context context, krb5_cksumtype ctype, const krb5_checksum * cksum, krb5_const_pointer in, size_t in_length, krb5_const_pointer seed, size_t seed_length); # 1883 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_ticket_times { krb5_timestamp authtime; krb5_timestamp starttime; krb5_timestamp endtime; krb5_timestamp renew_till; } krb5_ticket_times; typedef struct _krb5_authdata { krb5_magic magic; krb5_authdatatype ad_type; unsigned int length; krb5_octet *contents; } krb5_authdata; typedef struct _krb5_transited { krb5_magic magic; krb5_octet tr_type; krb5_data tr_contents; } krb5_transited; typedef struct _krb5_enc_tkt_part { krb5_magic magic; krb5_flags flags; krb5_keyblock *session; krb5_principal client; krb5_transited transited; krb5_ticket_times times; krb5_address **caddrs; krb5_authdata **authorization_data; } krb5_enc_tkt_part; typedef struct _krb5_ticket { krb5_magic magic; krb5_principal server; krb5_enc_data enc_part; krb5_enc_tkt_part *enc_part2; } krb5_ticket; typedef struct _krb5_authenticator { krb5_magic magic; krb5_principal client; krb5_checksum *checksum; krb5_int32 cusec; krb5_timestamp ctime; krb5_keyblock *subkey; krb5_ui_4 seq_number; krb5_authdata **authorization_data; } krb5_authenticator; typedef struct _krb5_tkt_authent { krb5_magic magic; krb5_ticket *ticket; krb5_authenticator *authenticator; krb5_flags ap_options; } krb5_tkt_authent; typedef struct _krb5_creds { krb5_magic magic; krb5_principal client; krb5_principal server; krb5_keyblock keyblock; krb5_ticket_times times; krb5_boolean is_skey; krb5_flags ticket_flags; krb5_address **addresses; krb5_data ticket; krb5_data second_ticket; krb5_authdata **authdata; } krb5_creds; typedef struct _krb5_last_req_entry { krb5_magic magic; krb5_int32 lr_type; krb5_timestamp value; } krb5_last_req_entry; typedef struct _krb5_pa_data { krb5_magic magic; krb5_preauthtype pa_type; unsigned int length; krb5_octet *contents; } krb5_pa_data; typedef struct _krb5_typed_data { krb5_magic magic; krb5_int32 type; unsigned int length; krb5_octet *data; } krb5_typed_data; typedef struct _krb5_kdc_req { krb5_magic magic; krb5_msgtype msg_type; krb5_pa_data **padata; krb5_flags kdc_options; krb5_principal client; krb5_principal server; krb5_timestamp from; krb5_timestamp till; krb5_timestamp rtime; krb5_int32 nonce; int nktypes; krb5_enctype *ktype; krb5_address **addresses; krb5_enc_data authorization_data; krb5_authdata **unenc_authdata; krb5_ticket **second_ticket; } krb5_kdc_req; typedef struct _krb5_enc_kdc_rep_part { krb5_magic magic; krb5_msgtype msg_type; krb5_keyblock *session; krb5_last_req_entry **last_req; krb5_int32 nonce; krb5_timestamp key_exp; krb5_flags flags; krb5_ticket_times times; krb5_principal server; krb5_address **caddrs; krb5_pa_data **enc_padata; } krb5_enc_kdc_rep_part; typedef struct _krb5_kdc_rep { krb5_magic magic; krb5_msgtype msg_type; krb5_pa_data **padata; krb5_principal client; krb5_ticket *ticket; krb5_enc_data enc_part; krb5_enc_kdc_rep_part *enc_part2; } krb5_kdc_rep; typedef struct _krb5_error { krb5_magic magic; krb5_timestamp ctime; krb5_int32 cusec; krb5_int32 susec; krb5_timestamp stime; krb5_ui_4 error; krb5_principal client; krb5_principal server; krb5_data text; krb5_data e_data; } krb5_error; typedef struct _krb5_ap_req { krb5_magic magic; krb5_flags ap_options; krb5_ticket *ticket; krb5_enc_data authenticator; } krb5_ap_req; typedef struct _krb5_ap_rep { krb5_magic magic; krb5_enc_data enc_part; } krb5_ap_rep; typedef struct _krb5_ap_rep_enc_part { krb5_magic magic; krb5_timestamp ctime; krb5_int32 cusec; krb5_keyblock *subkey; krb5_ui_4 seq_number; } krb5_ap_rep_enc_part; typedef struct _krb5_response { krb5_magic magic; krb5_octet message_type; krb5_data response; krb5_int32 expected_nonce; krb5_timestamp request_time; } krb5_response; typedef struct _krb5_cred_info { krb5_magic magic; krb5_keyblock *session; krb5_principal client; krb5_principal server; krb5_flags flags; krb5_ticket_times times; krb5_address **caddrs; } krb5_cred_info; typedef struct _krb5_cred_enc_part { krb5_magic magic; krb5_int32 nonce; krb5_timestamp timestamp; krb5_int32 usec; krb5_address *s_address; krb5_address *r_address; krb5_cred_info **ticket_info; } krb5_cred_enc_part; typedef struct _krb5_cred { krb5_magic magic; krb5_ticket **tickets; krb5_enc_data enc_part; krb5_cred_enc_part *enc_part2; } krb5_cred; typedef struct _passwd_phrase_element { krb5_magic magic; krb5_data *passwd; krb5_data *phrase; } passwd_phrase_element; typedef struct _krb5_pwd_data { krb5_magic magic; int sequence_count; passwd_phrase_element **element; } krb5_pwd_data; typedef struct _krb5_pa_svr_referral_data { krb5_principal principal; } krb5_pa_svr_referral_data; typedef struct _krb5_pa_server_referral_data { krb5_data *referred_realm; krb5_principal true_principal_name; krb5_principal requested_principal_name; krb5_timestamp referral_valid_until; krb5_checksum rep_cksum; } krb5_pa_server_referral_data; typedef struct _krb5_pa_pac_req { krb5_boolean include_pac; } krb5_pa_pac_req; # 2203 "/usr/include/krb5/krb5.h" 3 4 typedef struct krb5_replay_data { krb5_timestamp timestamp; krb5_int32 usec; krb5_ui_4 seq; } krb5_replay_data; # 2221 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_error_code ( * krb5_mk_req_checksum_func)(krb5_context, krb5_auth_context, void *, krb5_data **); # 2235 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_pointer krb5_cc_cursor; struct _krb5_ccache; typedef struct _krb5_ccache *krb5_ccache; struct _krb5_cc_ops; typedef struct _krb5_cc_ops krb5_cc_ops; struct _krb5_cccol_cursor; typedef struct _krb5_cccol_cursor *krb5_cccol_cursor; # 2287 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_cc_get_name(krb5_context context, krb5_ccache cache); # 2298 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_get_full_name(krb5_context context, krb5_ccache cache, char **fullname_out); # 2322 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_initialize(krb5_context context, krb5_ccache cache, krb5_principal principal); # 2340 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_destroy(krb5_context context, krb5_ccache cache); # 2357 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_close(krb5_context context, krb5_ccache cache); # 2375 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_store_cred(krb5_context context, krb5_ccache cache, krb5_creds *creds); # 2411 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_retrieve_cred(krb5_context context, krb5_ccache cache, krb5_flags flags, krb5_creds *mcreds, krb5_creds *creds); # 2433 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_get_principal(krb5_context context, krb5_ccache cache, krb5_principal *principal); # 2451 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_start_seq_get(krb5_context context, krb5_ccache cache, krb5_cc_cursor *cursor); # 2472 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_next_cred(krb5_context context, krb5_ccache cache, krb5_cc_cursor *cursor, krb5_creds *creds); # 2490 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_end_seq_get(krb5_context context, krb5_ccache cache, krb5_cc_cursor *cursor); # 2509 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_remove_cred(krb5_context context, krb5_ccache cache, krb5_flags flags, krb5_creds *creds); # 2524 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_set_flags(krb5_context context, krb5_ccache cache, krb5_flags flags); # 2538 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_get_flags(krb5_context context, krb5_ccache cache, krb5_flags *flags); # 2550 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_cc_get_type(krb5_context context, krb5_ccache cache); # 2568 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_move(krb5_context context, krb5_ccache src, krb5_ccache dst); # 2580 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_last_change_time(krb5_context context, krb5_ccache ccache, krb5_timestamp *change_time); # 2594 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_lock(krb5_context context, krb5_ccache ccache); # 2607 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_unlock(krb5_context context, krb5_ccache ccache); # 2626 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_cursor_new(krb5_context context, krb5_cccol_cursor *cursor); # 2645 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_cursor_next(krb5_context context, krb5_cccol_cursor cursor, krb5_ccache *ccache); # 2659 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_cursor_free(krb5_context context, krb5_cccol_cursor *cursor); # 2676 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_last_change_time(krb5_context context, krb5_timestamp *change_time); # 2693 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_lock(krb5_context context); # 2705 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_unlock(krb5_context context); # 2721 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_new_unique(krb5_context context, const char *type, const char *hint, krb5_ccache *id); # 2733 "/usr/include/krb5/krb5.h" 3 4 struct krb5_rc_st; typedef struct krb5_rc_st *krb5_rcache; # 2748 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_pointer krb5_kt_cursor; typedef struct krb5_keytab_entry_st { krb5_magic magic; krb5_principal principal; krb5_timestamp timestamp; krb5_kvno vno; krb5_keyblock key; } krb5_keytab_entry; struct _krb5_kt; typedef struct _krb5_kt *krb5_keytab; # 2771 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_kt_get_type(krb5_context context, krb5_keytab keytab); # 2794 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_get_name(krb5_context context, krb5_keytab keytab, char *name, unsigned int namelen); # 2806 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_close(krb5_context context, krb5_keytab keytab); # 2835 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_get_entry(krb5_context context, krb5_keytab keytab, krb5_const_principal principal, krb5_kvno vno, krb5_enctype enctype, krb5_keytab_entry *entry); # 2857 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_start_seq_get(krb5_context context, krb5_keytab keytab, krb5_kt_cursor *cursor); # 2880 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_next_entry(krb5_context context, krb5_keytab keytab, krb5_keytab_entry *entry, krb5_kt_cursor *cursor); # 2899 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_end_seq_get(krb5_context context, krb5_keytab keytab, krb5_kt_cursor *cursor); # 2931 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_context(krb5_context *context); # 2950 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_secure_context(krb5_context *context); # 2969 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_context_profile(struct _profile_t *profile, krb5_flags flags, krb5_context *context); # 2981 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_context(krb5_context context); # 2998 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_context(krb5_context ctx, krb5_context *nctx_out); # 3019 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_default_tgs_enctypes(krb5_context context, const krb5_enctype *etypes); # 3034 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_permitted_enctypes(krb5_context context, krb5_enctype **ktypes); krb5_boolean krb5_is_thread_safe(void); # 3060 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_server_decrypt_ticket_keytab(krb5_context context, const krb5_keytab kt, krb5_ticket *ticket); # 3072 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_tgt_creds(krb5_context context, krb5_creds **tgts); # 3126 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_credentials(krb5_context context, krb5_flags options, krb5_ccache ccache, krb5_creds *in_creds, krb5_creds **out_creds); krb5_error_code krb5_get_credentials_validate(krb5_context context, krb5_flags options, krb5_ccache ccache, krb5_creds *in_creds, krb5_creds **out_creds); krb5_error_code krb5_get_credentials_renew(krb5_context context, krb5_flags options, krb5_ccache ccache, krb5_creds *in_creds, krb5_creds **out_creds); # 3165 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_req(krb5_context context, krb5_auth_context *auth_context, krb5_flags ap_req_options, char *service, char *hostname, krb5_data *in_data, krb5_ccache ccache, krb5_data *outbuf); # 3207 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_req_extended(krb5_context context, krb5_auth_context *auth_context, krb5_flags ap_req_options, krb5_data *in_data, krb5_creds *in_creds, krb5_data *outbuf); # 3232 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_rep(krb5_context context, krb5_auth_context auth_context, krb5_data *outbuf); # 3246 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_rep_dce(krb5_context context, krb5_auth_context auth_context, krb5_data *outbuf); # 3265 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_rep(krb5_context context, krb5_auth_context auth_context, const krb5_data *inbuf, krb5_ap_rep_enc_part **repl); # 3282 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_rep_dce(krb5_context context, krb5_auth_context auth_context, const krb5_data *inbuf, krb5_ui_4 *nonce); # 3298 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_error(krb5_context context, const krb5_error *dec_err, krb5_data *enc_err); # 3315 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_error(krb5_context context, const krb5_data *enc_errbuf, krb5_error **dec_error); # 3355 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_safe(krb5_context context, krb5_auth_context auth_context, const krb5_data *inbuf, krb5_data *outbuf, krb5_replay_data *outdata); # 3395 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_priv(krb5_context context, krb5_auth_context auth_context, const krb5_data *inbuf, krb5_data *outbuf, krb5_replay_data *outdata); # 3431 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_parse_name(krb5_context context, const char *name, krb5_principal *nprincipal); # 3463 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_parse_name_flags(krb5_context context, const char *name, int flags, krb5_principal *nprincipal); # 3484 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_unparse_name(krb5_context context, krb5_const_principal principal, register char **name); # 3504 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_unparse_name_ext(krb5_context context, krb5_const_principal principal, char **name, unsigned int *size); # 3535 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_unparse_name_flags(krb5_context context, krb5_const_principal principal, int flags, char **name); # 3555 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_unparse_name_flags_ext(krb5_context context, krb5_const_principal principal, int flags, char **name, unsigned int *size); # 3574 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_principal_realm(krb5_context context, krb5_principal principal, const char *realm); # 3592 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_address_search(krb5_context context, const krb5_address *addr, krb5_address *const *addrlist); # 3606 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_address_compare(krb5_context context, const krb5_address *addr1, const krb5_address *addr2); # 3624 "/usr/include/krb5/krb5.h" 3 4 int krb5_address_order(krb5_context context, const krb5_address *addr1, const krb5_address *addr2); # 3638 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_realm_compare(krb5_context context, krb5_const_principal princ1, krb5_const_principal princ2); # 3652 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_principal_compare(krb5_context context, krb5_const_principal princ1, krb5_const_principal princ2); # 3670 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_principal_compare_any_realm(krb5_context context, krb5_const_principal princ1, krb5_const_principal princ2); # 3699 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_principal_compare_flags(krb5_context context, krb5_const_principal princ1, krb5_const_principal princ2, int flags); # 3722 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_keyblock(krb5_context context, krb5_enctype enctype, size_t length, krb5_keyblock **out); # 3738 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_keyblock(krb5_context context, const krb5_keyblock *from, krb5_keyblock **to); # 3754 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_keyblock_contents(krb5_context context, const krb5_keyblock *from, krb5_keyblock *to); # 3770 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_creds(krb5_context context, const krb5_creds *incred, krb5_creds **outcred); # 3785 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_data(krb5_context context, const krb5_data *indata, krb5_data **outdata); # 3801 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_principal(krb5_context context, krb5_const_principal inprinc, krb5_principal *outprinc); # 3817 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_addresses(krb5_context context, krb5_address *const *inaddr, krb5_address ***outaddr); # 3833 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_ticket(krb5_context context, const krb5_ticket *from, krb5_ticket **pto); # 3851 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_authdata(krb5_context context, krb5_authdata *const *in_authdat, krb5_authdata ***out); # 3871 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_find_authdata(krb5_context context, krb5_authdata *const *ticket_authdata, krb5_authdata *const *ap_req_authdata, krb5_authdatatype ad_type, krb5_authdata ***results); # 3893 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_merge_authdata(krb5_context context, krb5_authdata *const *inauthdat1, krb5_authdata * const *inauthdat2, krb5_authdata ***outauthdat); # 3912 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_authenticator(krb5_context context, const krb5_authenticator *authfrom, krb5_authenticator **authto); # 3929 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_checksum(krb5_context context, const krb5_checksum *ckfrom, krb5_checksum **ckto); # 3947 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_server_rcache(krb5_context context, const krb5_data *piece, krb5_rcache *rcptr); # 3980 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_build_principal_ext(krb5_context context, krb5_principal * princ, unsigned int rlen, const char * realm, ...); # 4010 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_build_principal(krb5_context context, krb5_principal * princ, unsigned int rlen, const char * realm, ...) __attribute__ ((sentinel)) ; # 4057 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_build_principal_alloc_va(krb5_context context, krb5_principal *princ, unsigned int rlen, const char *realm, va_list ap); # 4080 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_425_conv_principal(krb5_context context, const char *name, const char *instance, const char *realm, krb5_principal *princ); # 4106 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_524_conv_principal(krb5_context context, krb5_const_principal princ, char *name, char *inst, char *realm); struct credentials; # 4121 "/usr/include/krb5/krb5.h" 3 4 int krb5_524_convert_creds(krb5_context context, krb5_creds *v5creds, struct credentials *v4creds); # 4157 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_resolve(krb5_context context, const char *name, krb5_keytab *ktid); # 4179 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_default_name(krb5_context context, char *name, int name_size); # 4195 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_default(krb5_context context, krb5_keytab *id); # 4208 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_free_keytab_entry_contents(krb5_context context, krb5_keytab_entry *entry); krb5_error_code krb5_kt_free_entry(krb5_context context, krb5_keytab_entry *entry); # 4233 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_remove_entry(krb5_context context, krb5_keytab id, krb5_keytab_entry *entry); # 4252 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_add_entry(krb5_context context, krb5_keytab id, krb5_keytab_entry *entry); # 4264 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_principal2salt(krb5_context context, register krb5_const_principal pr, krb5_data *ret); # 4292 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_resolve(krb5_context context, const char *name, krb5_ccache *cache); # 4305 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_dup(krb5_context context, krb5_ccache in, krb5_ccache *out); # 4319 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_cc_default_name(krb5_context context); # 4338 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_set_default_name(krb5_context context, const char *name); # 4357 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_default(krb5_context context, krb5_ccache *ccache); # 4369 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_copy_creds(krb5_context context, krb5_ccache incc, krb5_ccache outcc); # 4389 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_get_config(krb5_context context, krb5_ccache id, krb5_const_principal principal, const char *key, krb5_data *data); # 4413 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_set_config(krb5_context context, krb5_ccache id, krb5_const_principal principal, const char *key, krb5_data *data); # 4428 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_is_config_principal(krb5_context context, krb5_const_principal principal); # 4445 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_switch(krb5_context context, krb5_ccache cache); # 4457 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_cc_support_switch(krb5_context context, const char *type); # 4475 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_cache_match(krb5_context context, krb5_principal client, krb5_ccache *cache_out); # 4511 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_select(krb5_context context, krb5_principal server, krb5_ccache *cache_out, krb5_principal *princ_out); # 4522 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_principal(krb5_context context, krb5_principal val); # 4533 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_authenticator(krb5_context context, krb5_authenticator *val); # 4546 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_addresses(krb5_context context, krb5_address **val); # 4559 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_authdata(krb5_context context, krb5_authdata **val); # 4570 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_ticket(krb5_context context, krb5_ticket *val); # 4581 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_error(krb5_context context, register krb5_error *val); # 4592 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_creds(krb5_context context, krb5_creds *val); # 4603 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_cred_contents(krb5_context context, krb5_creds *val); # 4614 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_checksum(krb5_context context, register krb5_checksum *val); # 4625 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_checksum_contents(krb5_context context, register krb5_checksum *val); # 4636 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_keyblock(krb5_context context, register krb5_keyblock *val); # 4647 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_keyblock_contents(krb5_context context, register krb5_keyblock *key); # 4658 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_ap_rep_enc_part(krb5_context context, krb5_ap_rep_enc_part *val); # 4669 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_data(krb5_context context, krb5_data *val); # 4681 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_octet_data(krb5_context context, krb5_octet_data *val); # 4692 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_data_contents(krb5_context context, krb5_data *val); void krb5_free_unparsed_name(krb5_context context, char *val); void krb5_free_string(krb5_context context, char *val); void krb5_free_cksumtypes(krb5_context context, krb5_cksumtype *val); # 4740 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_us_timeofday(krb5_context context, krb5_timestamp *seconds, krb5_int32 *microseconds); # 4758 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_timeofday(krb5_context context, register krb5_timestamp *timeret); # 4773 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_check_clockskew(krb5_context context, krb5_timestamp date); # 4787 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_os_localaddr(krb5_context context, krb5_address ***addr); # 4806 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_default_realm(krb5_context context, char **lrealm); # 4822 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_default_realm(krb5_context context, const char *lrealm); void krb5_free_default_realm(krb5_context context, char *lrealm); # 4863 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_sname_to_principal(krb5_context context, const char *hostname, const char *sname, krb5_int32 type, krb5_principal *ret_princ); # 4887 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_sname_match(krb5_context context, krb5_const_principal matching, krb5_const_principal princ); # 4913 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_change_password(krb5_context context, krb5_creds *creds, char *newpw, int *result_code, krb5_data *result_code_string, krb5_data *result_string); # 4948 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_password(krb5_context context, krb5_creds *creds, char *newpw, krb5_principal change_password_for, int *result_code, krb5_data *result_code_string, krb5_data *result_string); # 4983 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_password_using_ccache(krb5_context context, krb5_ccache ccache, char *newpw, krb5_principal change_password_for, int *result_code, krb5_data *result_code_string, krb5_data *result_string); # 5006 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_profile(krb5_context context, struct _profile_t ** profile); # 5082 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_req(krb5_context context, krb5_auth_context *auth_context, const krb5_data *inbuf, krb5_const_principal server, krb5_keytab keytab, krb5_flags *ap_req_options, krb5_ticket **ticket); # 5110 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_read_service_key(krb5_context context, krb5_pointer keyprocarg, krb5_principal principal, krb5_kvno vno, krb5_enctype enctype, krb5_keyblock **key); # 5153 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_safe(krb5_context context, krb5_auth_context auth_context, const krb5_data *userdata, krb5_data *outbuf, krb5_replay_data *outdata); # 5192 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_priv(krb5_context context, krb5_auth_context auth_context, const krb5_data *userdata, krb5_data *outbuf, krb5_replay_data *outdata); # 5246 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_sendauth(krb5_context context, krb5_auth_context *auth_context, krb5_pointer fd, char *appl_version, krb5_principal client, krb5_principal server, krb5_flags ap_req_options, krb5_data *in_data, krb5_creds *in_creds, krb5_ccache ccache, krb5_error **error, krb5_ap_rep_enc_part **rep_result, krb5_creds **out_creds); # 5276 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_recvauth(krb5_context context, krb5_auth_context *auth_context, krb5_pointer fd, char *appl_version, krb5_principal server, krb5_int32 flags, krb5_keytab keytab, krb5_ticket **ticket); # 5298 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_recvauth_version(krb5_context context, krb5_auth_context *auth_context, krb5_pointer fd, krb5_principal server, krb5_int32 flags, krb5_keytab keytab, krb5_ticket **ticket, krb5_data *version); # 5335 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_ncred(krb5_context context, krb5_auth_context auth_context, krb5_creds **ppcreds, krb5_data **ppdata, krb5_replay_data *outdata); # 5361 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_1cred(krb5_context context, krb5_auth_context auth_context, krb5_creds *pcreds, krb5_data **ppdata, krb5_replay_data *outdata); # 5386 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_cred(krb5_context context, krb5_auth_context auth_context, krb5_data *pcreddata, krb5_creds ***pppcreds, krb5_replay_data *outdata); # 5420 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_fwd_tgt_creds(krb5_context context, krb5_auth_context auth_context, char *rhost, krb5_principal client, krb5_principal server, krb5_ccache cc, int forwardable, krb5_data *outbuf); # 5444 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_init(krb5_context context, krb5_auth_context *auth_context); # 5457 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_free(krb5_context context, krb5_auth_context auth_context); # 5475 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setflags(krb5_context context, krb5_auth_context auth_context, krb5_int32 flags); # 5493 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getflags(krb5_context context, krb5_auth_context auth_context, krb5_int32 *flags); # 5511 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_set_checksum_func( krb5_context context, krb5_auth_context auth_context, krb5_mk_req_checksum_func func, void *data); # 5527 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_get_checksum_func( krb5_context context, krb5_auth_context auth_context, krb5_mk_req_checksum_func *func, void **data); # 5549 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setaddrs(krb5_context context, krb5_auth_context auth_context, krb5_address *local_addr, krb5_address *remote_addr); # 5563 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getaddrs(krb5_context context, krb5_auth_context auth_context, krb5_address **local_addr, krb5_address **remote_addr); # 5583 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setports(krb5_context context, krb5_auth_context auth_context, krb5_address *local_port, krb5_address *remote_port); # 5596 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setuseruserkey(krb5_context context, krb5_auth_context auth_context, krb5_keyblock *keyblock); # 5613 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getkey(krb5_context context, krb5_auth_context auth_context, krb5_keyblock **keyblock); # 5629 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getkey_k(krb5_context context, krb5_auth_context auth_context, krb5_key *key); # 5646 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getsendsubkey(krb5_context ctx, krb5_auth_context ac, krb5_keyblock **keyblock); # 5661 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getsendsubkey_k(krb5_context ctx, krb5_auth_context ac, krb5_key *key); # 5678 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getrecvsubkey(krb5_context ctx, krb5_auth_context ac, krb5_keyblock **keyblock); # 5693 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getrecvsubkey_k(krb5_context ctx, krb5_auth_context ac, krb5_key *key); # 5707 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setsendsubkey(krb5_context ctx, krb5_auth_context ac, krb5_keyblock *keyblock); # 5723 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setsendsubkey_k(krb5_context ctx, krb5_auth_context ac, krb5_key key); # 5737 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setrecvsubkey(krb5_context ctx, krb5_auth_context ac, krb5_keyblock *keyblock); # 5753 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setrecvsubkey_k(krb5_context ctx, krb5_auth_context ac, krb5_key key); # 5782 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getlocalseqnumber(krb5_context context, krb5_auth_context auth_context, krb5_int32 *seqnumber); # 5799 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getremoteseqnumber(krb5_context context, krb5_auth_context auth_context, krb5_int32 *seqnumber); # 5826 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setrcache(krb5_context context, krb5_auth_context auth_context, krb5_rcache rcache); # 5842 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getrcache(krb5_context context, krb5_auth_context auth_context, krb5_rcache *rcache); # 5858 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getauthenticator(krb5_context context, krb5_auth_context auth_context, krb5_authenticator **authenticator); # 5874 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_set_req_cksumtype(krb5_context context, krb5_auth_context auth_context, krb5_cksumtype cksumtype); # 5919 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_read_password(krb5_context context, const char *prompt, const char *prompt2, char *return_pwd, unsigned int *size_return); # 5947 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_aname_to_localname(krb5_context context, krb5_const_principal aname, int lnsize_in, char *lname); # 5974 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_host_realm(krb5_context context, const char *host, char ***realmsp); # 5992 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_fallback_host_realm(krb5_context context, krb5_data *hdata, char ***realmsp); # 6007 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_free_host_realm(krb5_context context, char *const *realmlist); # 6023 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_kuserok(krb5_context context, krb5_principal principal, const char *luser); # 6045 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_genaddrs(krb5_context context, krb5_auth_context auth_context, int infd, int flags); # 6062 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_real_time(krb5_context context, krb5_timestamp seconds, krb5_int32 microseconds); # 6077 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_time_offsets(krb5_context context, krb5_timestamp *seconds, krb5_int32 *microseconds); # 6089 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_enctype(char *string, krb5_enctype *enctypep); # 6100 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_salttype(char *string, krb5_int32 *salttypep); # 6111 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_cksumtype(char *string, krb5_cksumtype *cksumtypep); # 6122 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_timestamp(char *string, krb5_timestamp *timestampp); # 6133 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_deltat(char *string, krb5_deltat *deltatp); # 6145 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_enctype_to_string(krb5_enctype enctype, char *buffer, size_t buflen); # 6162 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_enctype_to_name(krb5_enctype enctype, krb5_boolean shortest, char *buffer, size_t buflen); # 6175 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_salttype_to_string(krb5_int32 salttype, char *buffer, size_t buflen); # 6187 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cksumtype_to_string(krb5_cksumtype cksumtype, char *buffer, size_t buflen); # 6202 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_timestamp_to_string(krb5_timestamp timestamp, char *buffer, size_t buflen); # 6219 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_timestamp_to_sfstring(krb5_timestamp timestamp, char *buffer, size_t buflen, char *pad); # 6232 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_deltat_to_string(krb5_deltat deltat, char *buffer, size_t buflen); # 6245 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_prompt { char *prompt; int hidden; krb5_data *reply; } krb5_prompt; typedef krb5_error_code ( *krb5_prompter_fct)(krb5_context context, void *data, const char *name, const char *banner, int num_prompts, krb5_prompt prompts[]); # 6282 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_prompter_posix(krb5_context context, void *data, const char *name, const char *banner, int num_prompts, krb5_prompt prompts[]); typedef struct _krb5_get_init_creds_opt { krb5_flags flags; krb5_deltat tkt_life; krb5_deltat renew_life; int forwardable; int proxiable; krb5_enctype *etype_list; int etype_list_length; krb5_address **address_list; krb5_preauthtype *preauth_list; int preauth_list_length; krb5_data *salt; } krb5_get_init_creds_opt; # 6328 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_alloc(krb5_context context, krb5_get_init_creds_opt **opt); # 6340 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_free(krb5_context context, krb5_get_init_creds_opt *opt); void krb5_get_init_creds_opt_init(krb5_get_init_creds_opt *opt); void krb5_get_init_creds_opt_set_tkt_life(krb5_get_init_creds_opt *opt, krb5_deltat tkt_life); void krb5_get_init_creds_opt_set_renew_life(krb5_get_init_creds_opt *opt, krb5_deltat renew_life); void krb5_get_init_creds_opt_set_forwardable(krb5_get_init_creds_opt *opt, int forwardable); void krb5_get_init_creds_opt_set_proxiable(krb5_get_init_creds_opt *opt, int proxiable); void krb5_get_init_creds_opt_set_canonicalize(krb5_get_init_creds_opt *opt, int canonicalize); # 6409 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_anonymous(krb5_get_init_creds_opt *opt, int anonymous); # 6420 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_etype_list(krb5_get_init_creds_opt *opt, krb5_enctype *etype_list, int etype_list_length); void krb5_get_init_creds_opt_set_address_list(krb5_get_init_creds_opt *opt, krb5_address **addresses); # 6446 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_preauth_list(krb5_get_init_creds_opt *opt, krb5_preauthtype *preauth_list, int preauth_list_length); # 6462 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_salt(krb5_get_init_creds_opt *opt, krb5_data *salt); # 6476 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_change_password_prompt(krb5_get_init_creds_opt *opt, int prompt); typedef struct _krb5_gic_opt_pa_data { char *attr; char *value; } krb5_gic_opt_pa_data; # 6498 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_pa(krb5_context context, krb5_get_init_creds_opt *opt, const char *attr, const char *value); # 6518 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_fast_ccache_name(krb5_context context, krb5_get_init_creds_opt *opt, const char *fast_ccache_name); # 6533 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_fast_ccache(krb5_context context, krb5_get_init_creds_opt *opt, krb5_ccache ccache); # 6551 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_out_ccache(krb5_context context, krb5_get_init_creds_opt *opt, krb5_ccache ccache); # 6569 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_fast_flags(krb5_context context, krb5_get_init_creds_opt *opt, krb5_flags flags); # 6584 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_get_fast_flags(krb5_context context, krb5_get_init_creds_opt *opt, krb5_flags *out_flags); typedef void ( *krb5_expire_callback_func)(krb5_context context, void *data, krb5_timestamp password_expiration, krb5_timestamp account_expiration, krb5_boolean is_last_req); # 6635 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_expire_callback(krb5_context context, krb5_get_init_creds_opt *opt, krb5_expire_callback_func cb, void *data); # 6685 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_password(krb5_context context, krb5_creds *creds, krb5_principal client, char *password, krb5_prompter_fct prompter, void *data, krb5_deltat start_time, char *in_tkt_service, krb5_get_init_creds_opt *k5_gic_options); struct _krb5_init_creds_context; typedef struct _krb5_init_creds_context *krb5_init_creds_context; # 6703 "/usr/include/krb5/krb5.h" 3 4 void krb5_init_creds_free(krb5_context context, krb5_init_creds_context ctx); # 6718 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_get(krb5_context context, krb5_init_creds_context ctx); # 6735 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_get_creds(krb5_context context, krb5_init_creds_context ctx, krb5_creds *creds); # 6748 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_get_error(krb5_context context, krb5_init_creds_context ctx, krb5_error **error); # 6768 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_init(krb5_context context, krb5_principal client, krb5_prompter_fct prompter, void *data, krb5_deltat start_time, krb5_get_init_creds_opt *options, krb5_init_creds_context *ctx); # 6786 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_set_keytab(krb5_context context, krb5_init_creds_context ctx, krb5_keytab keytab); # 6817 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_step(krb5_context context, krb5_init_creds_context ctx, krb5_data *in, krb5_data *out, krb5_data *realm, unsigned int *flags); # 6834 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_set_password(krb5_context context, krb5_init_creds_context ctx, const char *password); # 6851 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_set_service(krb5_context context, krb5_init_creds_context ctx, const char *service); # 6867 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_get_times(krb5_context context, krb5_init_creds_context ctx, krb5_ticket_times *times); struct _krb5_tkt_creds_context; typedef struct _krb5_tkt_creds_context *krb5_tkt_creds_context; # 6896 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_init(krb5_context context, krb5_ccache ccache, krb5_creds *creds, krb5_flags options, krb5_tkt_creds_context *ctx); # 6913 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_get(krb5_context context, krb5_tkt_creds_context ctx); # 6930 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_get_creds(krb5_context context, krb5_tkt_creds_context ctx, krb5_creds *creds); void krb5_tkt_creds_free(krb5_context context, krb5_tkt_creds_context ctx); # 6971 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_step(krb5_context context, krb5_tkt_creds_context ctx, krb5_data *in, krb5_data *out, krb5_data *realm, unsigned int *flags); # 6988 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_get_times(krb5_context context, krb5_tkt_creds_context ctx, krb5_ticket_times *times); # 7016 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_keytab(krb5_context context, krb5_creds *creds, krb5_principal client, krb5_keytab arg_keytab, krb5_deltat start_time, char *in_tkt_service, krb5_get_init_creds_opt *k5_gic_options); typedef struct _krb5_verify_init_creds_opt { krb5_flags flags; int ap_req_nofail; } krb5_verify_init_creds_opt; # 7034 "/usr/include/krb5/krb5.h" 3 4 void krb5_verify_init_creds_opt_init(krb5_verify_init_creds_opt *k5_vic_options); # 7052 "/usr/include/krb5/krb5.h" 3 4 void krb5_verify_init_creds_opt_set_ap_req_nofail(krb5_verify_init_creds_opt * k5_vic_options, int ap_req_nofail); # 7087 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_verify_init_creds(krb5_context context, krb5_creds *creds, krb5_principal server_arg, krb5_keytab keytab_arg, krb5_ccache *ccache_arg, krb5_verify_init_creds_opt *options); # 7125 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_validated_creds(krb5_context context, krb5_creds *creds, krb5_principal client, krb5_ccache ccache, char *in_tkt_service); # 7151 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_renewed_creds(krb5_context context, krb5_creds *creds, krb5_principal client, krb5_ccache ccache, char *in_tkt_service); # 7164 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_decode_ticket(const krb5_data *code, krb5_ticket **rep); # 7182 "/usr/include/krb5/krb5.h" 3 4 void krb5_appdefault_string(krb5_context context, const char *appname, const krb5_data *realm, const char *option, const char *default_value, char ** ret_value); # 7202 "/usr/include/krb5/krb5.h" 3 4 void krb5_appdefault_boolean(krb5_context context, const char *appname, const krb5_data *realm, const char *option, int default_value, int *ret_value); # 7215 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_int32 krb5_prompt_type; # 7230 "/usr/include/krb5/krb5.h" 3 4 krb5_prompt_type* krb5_get_prompt_types(krb5_context context); # 7242 "/usr/include/krb5/krb5.h" 3 4 void krb5_set_error_message(krb5_context ctx, krb5_error_code code, const char *fmt, ...) __attribute__((__format__(__printf__, 3, 4))) ; # 7257 "/usr/include/krb5/krb5.h" 3 4 void krb5_vset_error_message(krb5_context ctx, krb5_error_code code, const char *fmt, va_list args) __attribute__((__format__(__printf__, 3, 0))) ; void krb5_copy_error_message(krb5_context dest_ctx, krb5_context src_ctx); # 7294 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_get_error_message(krb5_context ctx, krb5_error_code code); void krb5_free_error_message(krb5_context ctx, const char *msg); # 7314 "/usr/include/krb5/krb5.h" 3 4 void krb5_clear_error_message(krb5_context ctx); # 7329 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_decode_authdata_container(krb5_context context, krb5_authdatatype type, const krb5_authdata *container, krb5_authdata ***authdata); # 7348 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_encode_authdata_container(krb5_context context, krb5_authdatatype type, krb5_authdata * const*authdata, krb5_authdata ***container); # 7370 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_make_authdata_kdc_issued(krb5_context context, const krb5_keyblock *key, krb5_const_principal issuer, krb5_authdata *const *authdata, krb5_authdata ***ad_kdcissued); # 7391 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_verify_authdata_kdc_issued(krb5_context context, const krb5_keyblock *key, const krb5_authdata *ad_kdcissued, krb5_principal *issuer, krb5_authdata ***authdata); # 7411 "/usr/include/krb5/krb5.h" 3 4 struct krb5_pac_data; typedef struct krb5_pac_data *krb5_pac; # 7437 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_add_buffer(krb5_context context, krb5_pac pac, krb5_ui_4 type, const krb5_data *data); # 7449 "/usr/include/krb5/krb5.h" 3 4 void krb5_pac_free(krb5_context context, krb5_pac pac); # 7464 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_get_buffer(krb5_context context, krb5_pac pac, krb5_ui_4 type, krb5_data *data); # 7478 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_get_types(krb5_context context, krb5_pac pac, size_t *len, krb5_ui_4 **types); # 7492 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_init(krb5_context context, krb5_pac *pac); # 7507 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_parse(krb5_context context, const void *ptr, size_t len, krb5_pac *pac); # 7537 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_verify(krb5_context context, const krb5_pac pac, krb5_timestamp authtime, krb5_const_principal principal, const krb5_keyblock *server, const krb5_keyblock *privsvr); # 7558 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_sign(krb5_context context, krb5_pac pac, krb5_timestamp authtime, krb5_const_principal principal, const krb5_keyblock *server_key, const krb5_keyblock *privsvr_key, krb5_data *data); # 7574 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_allow_weak_crypto(krb5_context context, krb5_boolean enable); struct krb5_trace_info { const char *message; }; typedef void ( *krb5_trace_callback)(krb5_context context, const struct krb5_trace_info *info, void *cb_data); # 7605 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_trace_callback(krb5_context context, krb5_trace_callback fn, void *cb_data); # 7620 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_trace_filename(krb5_context context, const char *filename); # 7641 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 19 "/usr/include/et/com_err.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 20 "/usr/include/et/com_err.h" 2 3 4 typedef long errcode_t; struct error_table { char const * const * msgs; long base; int n_msgs; }; struct et_list; extern void com_err (const char *, long, const char *, ...) __attribute__((format(printf, 3, 4))); extern void com_err_va (const char *whoami, errcode_t code, const char *fmt, va_list args) __attribute__((format(printf, 3, 0))); extern char const *error_message (long); extern void (*com_err_hook) (const char *, long, const char *, va_list); extern void (*set_com_err_hook (void (*) (const char *, long, const char *, va_list))) (const char *, long, const char *, va_list); extern void (*reset_com_err_hook (void)) (const char *, long, const char *, va_list); extern int init_error_table(const char * const *msgs, long base, int count); extern errcode_t add_error_table(const struct error_table * et); extern errcode_t remove_error_table(const struct error_table * et); extern void add_to_error_table(struct et_list *new_table); extern const char *com_right(struct et_list *list, long code); extern const char *com_right_r(struct et_list *list, long code, char *str, size_t len); extern void initialize_error_table_r(struct et_list **list, const char **messages, int num_errors, long base); extern void free_error_table(struct et_list *et); extern int et_list_lock(void); extern int et_list_unlock(void); # 7642 "/usr/include/krb5/krb5.h" 2 3 4 # 7899 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_krb5_error_table; extern void initialize_krb5_error_table(void); extern void initialize_krb5_error_table_r(struct et_list **list); # 7915 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 7916 "/usr/include/krb5/krb5.h" 2 3 4 extern const struct error_table et_k5e1_error_table; extern void initialize_k5e1_error_table(void); extern void initialize_k5e1_error_table_r(struct et_list **list); # 7938 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 7939 "/usr/include/krb5/krb5.h" 2 3 4 # 7986 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_kdb5_error_table; extern void initialize_kdb5_error_table(void); extern void initialize_kdb5_error_table_r(struct et_list **list); # 8002 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 8003 "/usr/include/krb5/krb5.h" 2 3 4 # 8065 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_kv5m_error_table; extern void initialize_kv5m_error_table(void); extern void initialize_kv5m_error_table_r(struct et_list **list); # 8081 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 8082 "/usr/include/krb5/krb5.h" 2 3 4 # 8092 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_k524_error_table; extern void initialize_k524_error_table(void); extern void initialize_k524_error_table_r(struct et_list **list); # 8108 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 8109 "/usr/include/krb5/krb5.h" 2 3 4 # 8123 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_asn1_error_table; extern void initialize_asn1_error_table(void); extern void initialize_asn1_error_table_r(struct et_list **list); # 8 "/usr/include/krb5.h" 2 3 4 # 73 "/usr/include/openssl/kssl.h" 2 3 4 # 120 "/usr/include/openssl/kssl.h" 3 4 typedef struct kssl_err_st { int reason; char text[255 +1]; } KSSL_ERR; typedef struct kssl_ctx_st { char *service_name; char *service_host; char *client_princ; char *keytab_file; char *cred_cache; krb5_enctype enctype; int length; krb5_octet *key; } KSSL_CTX; # 153 "/usr/include/openssl/kssl.h" 3 4 krb5_error_code kssl_ctx_setstring(KSSL_CTX *kssl_ctx, int which, char *text); KSSL_CTX *kssl_ctx_new(void); KSSL_CTX *kssl_ctx_free(KSSL_CTX *kssl_ctx); void kssl_ctx_show(KSSL_CTX *kssl_ctx); krb5_error_code kssl_ctx_setprinc(KSSL_CTX *kssl_ctx, int which, krb5_data *realm, krb5_data *entity, int nentities); krb5_error_code kssl_cget_tkt(KSSL_CTX *kssl_ctx, krb5_data **enc_tktp, krb5_data *authenp, KSSL_ERR *kssl_err); krb5_error_code kssl_sget_tkt(KSSL_CTX *kssl_ctx, krb5_data *indata, krb5_ticket_times *ttimes, KSSL_ERR *kssl_err); krb5_error_code kssl_ctx_setkey(KSSL_CTX *kssl_ctx, krb5_keyblock *session); void kssl_err_set(KSSL_ERR *kssl_err, int reason, char *text); void kssl_krb5_free_data_contents(krb5_context context, krb5_data *data); krb5_error_code kssl_build_principal_2(krb5_context context, krb5_principal *princ, int rlen, const char *realm, int slen, const char *svc, int hlen, const char *host); krb5_error_code kssl_validate_times(krb5_timestamp atime, krb5_ticket_times *ttimes); krb5_error_code kssl_check_authent(KSSL_CTX *kssl_ctx, krb5_data *authentp, krb5_timestamp *atimep, KSSL_ERR *kssl_err); unsigned char *kssl_skip_confound(krb5_enctype enctype, unsigned char *authn); # 166 "/usr/include/openssl/ssl.h" 2 3 4 # 357 "/usr/include/openssl/ssl.h" 3 4 typedef struct ssl_st *ssl_crock_st; typedef struct tls_session_ticket_ext_st TLS_SESSION_TICKET_EXT; typedef struct ssl_cipher_st { int valid; const char *name; unsigned long id; unsigned long algorithm_mkey; unsigned long algorithm_auth; unsigned long algorithm_enc; unsigned long algorithm_mac; unsigned long algorithm_ssl; unsigned long algo_strength; unsigned long algorithm2; int strength_bits; int alg_bits; } SSL_CIPHER; struct stack_st_SSL_CIPHER { _STACK stack; }; typedef int (*tls_session_ticket_ext_cb_fn)(SSL *s, const unsigned char *data, int len, void *arg); typedef int (*tls_session_secret_cb_fn)(SSL *s, void *secret, int *secret_len, struct stack_st_SSL_CIPHER *peer_ciphers, SSL_CIPHER **cipher, void *arg); typedef struct ssl_method_st { int version; int (*ssl_new)(SSL *s); void (*ssl_clear)(SSL *s); void (*ssl_free)(SSL *s); int (*ssl_accept)(SSL *s); int (*ssl_connect)(SSL *s); int (*ssl_read)(SSL *s,void *buf,int len); int (*ssl_peek)(SSL *s,void *buf,int len); int (*ssl_write)(SSL *s,const void *buf,int len); int (*ssl_shutdown)(SSL *s); int (*ssl_renegotiate)(SSL *s); int (*ssl_renegotiate_check)(SSL *s); long (*ssl_get_message)(SSL *s, int st1, int stn, int mt, long max, int *ok); int (*ssl_read_bytes)(SSL *s, int type, unsigned char *buf, int len, int peek); int (*ssl_write_bytes)(SSL *s, int type, const void *buf_, int len); int (*ssl_dispatch_alert)(SSL *s); long (*ssl_ctrl)(SSL *s,int cmd,long larg,void *parg); long (*ssl_ctx_ctrl)(SSL_CTX *ctx,int cmd,long larg,void *parg); const SSL_CIPHER *(*get_cipher_by_char)(const unsigned char *ptr); int (*put_cipher_by_char)(const SSL_CIPHER *cipher,unsigned char *ptr); int (*ssl_pending)(const SSL *s); int (*num_ciphers)(void); const SSL_CIPHER *(*get_cipher)(unsigned ncipher); const struct ssl_method_st *(*get_ssl_method)(int version); long (*get_timeout)(void); struct ssl3_enc_method *ssl3_enc; int (*ssl_version)(void); long (*ssl_callback_ctrl)(SSL *s, int cb_id, void (*fp)(void)); long (*ssl_ctx_callback_ctrl)(SSL_CTX *s, int cb_id, void (*fp)(void)); } SSL_METHOD; # 443 "/usr/include/openssl/ssl.h" 3 4 typedef struct ssl_session_st { int ssl_version; unsigned int key_arg_length; unsigned char key_arg[8]; int master_key_length; unsigned char master_key[48]; unsigned int session_id_length; unsigned char session_id[32]; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; unsigned int krb5_client_princ_len; unsigned char krb5_client_princ[256]; char *psk_identity_hint; char *psk_identity; int not_resumable; struct sess_cert_st *sess_cert; X509 *peer; long verify_result; int references; long timeout; long time; unsigned int compress_meth; const SSL_CIPHER *cipher; unsigned long cipher_id; struct stack_st_SSL_CIPHER *ciphers; CRYPTO_EX_DATA ex_data; struct ssl_session_st *prev,*next; char *tlsext_hostname; unsigned char *tlsext_tick; size_t tlsext_ticklen; long tlsext_tick_lifetime_hint; } SSL_SESSION; # 634 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_set_msg_callback(SSL_CTX *ctx, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)); void SSL_set_msg_callback(SSL *ssl, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)); # 662 "/usr/include/openssl/ssl.h" 3 4 typedef int (*GEN_SESSION_CB)(const SSL *ssl, unsigned char *id, unsigned int *id_len); typedef struct ssl_comp_st { int id; const char *name; COMP_METHOD *method; } SSL_COMP; struct stack_st_SSL_COMP { _STACK stack; }; struct lhash_st_SSL_SESSION { int dummy; }; struct ssl_ctx_st { const SSL_METHOD *method; struct stack_st_SSL_CIPHER *cipher_list; struct stack_st_SSL_CIPHER *cipher_list_by_id; struct x509_store_st *cert_store; struct lhash_st_SSL_SESSION *sessions; unsigned long session_cache_size; struct ssl_session_st *session_cache_head; struct ssl_session_st *session_cache_tail; int session_cache_mode; long session_timeout; # 715 "/usr/include/openssl/ssl.h" 3 4 int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess); void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess); SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy); struct { int sess_connect; int sess_connect_renegotiate; int sess_connect_good; int sess_accept; int sess_accept_renegotiate; int sess_accept_good; int sess_miss; int sess_timeout; int sess_cache_full; int sess_hit; int sess_cb_hit; } stats; int references; int (*app_verify_callback)(X509_STORE_CTX *, void *); void *app_verify_arg; pem_password_cb *default_passwd_callback; void *default_passwd_callback_userdata; int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey); int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len); int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len); CRYPTO_EX_DATA ex_data; const EVP_MD *rsa_md5; const EVP_MD *md5; const EVP_MD *sha1; struct stack_st_X509 *extra_certs; struct stack_st_SSL_COMP *comp_methods; void (*info_callback)(const SSL *ssl,int type,int val); struct stack_st_X509_NAME *client_CA; unsigned long options; unsigned long mode; long max_cert_list; struct cert_st *cert; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg); void *msg_callback_arg; int verify_mode; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; int (*default_verify_callback)(int ok,X509_STORE_CTX *ctx); GEN_SESSION_CB generate_session_id; X509_VERIFY_PARAM *param; int quiet_shutdown; unsigned int max_send_fragment; ENGINE *client_cert_engine; int (*tlsext_servername_callback)(SSL*, int *, void *); void *tlsext_servername_arg; unsigned char tlsext_tick_key_name[16]; unsigned char tlsext_tick_hmac_key[16]; unsigned char tlsext_tick_aes_key[16]; int (*tlsext_ticket_key_cb)(SSL *ssl, unsigned char *name, unsigned char *iv, EVP_CIPHER_CTX *ectx, HMAC_CTX *hctx, int enc); int (*tlsext_status_cb)(SSL *ssl, void *arg); void *tlsext_status_arg; int (*tlsext_opaque_prf_input_callback)(SSL *, void *peerinput, size_t len, void *arg); void *tlsext_opaque_prf_input_callback_arg; char *psk_identity_hint; unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len); unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len); unsigned int freelist_max_len; struct ssl3_buf_freelist_st *wbuf_freelist; struct ssl3_buf_freelist_st *rbuf_freelist; }; # 877 "/usr/include/openssl/ssl.h" 3 4 struct lhash_st_SSL_SESSION *SSL_CTX_sessions(SSL_CTX *ctx); # 903 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_sess_set_new_cb(SSL_CTX *ctx, int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess)); int (*SSL_CTX_sess_get_new_cb(SSL_CTX *ctx))(struct ssl_st *ssl, SSL_SESSION *sess); void SSL_CTX_sess_set_remove_cb(SSL_CTX *ctx, void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess)); void (*SSL_CTX_sess_get_remove_cb(SSL_CTX *ctx))(struct ssl_ctx_st *ctx, SSL_SESSION *sess); void SSL_CTX_sess_set_get_cb(SSL_CTX *ctx, SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy)); SSL_SESSION *(*SSL_CTX_sess_get_get_cb(SSL_CTX *ctx))(struct ssl_st *ssl, unsigned char *Data, int len, int *copy); void SSL_CTX_set_info_callback(SSL_CTX *ctx, void (*cb)(const SSL *ssl,int type,int val)); void (*SSL_CTX_get_info_callback(SSL_CTX *ctx))(const SSL *ssl,int type,int val); void SSL_CTX_set_client_cert_cb(SSL_CTX *ctx, int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey)); int (*SSL_CTX_get_client_cert_cb(SSL_CTX *ctx))(SSL *ssl, X509 **x509, EVP_PKEY **pkey); int SSL_CTX_set_client_cert_engine(SSL_CTX *ctx, ENGINE *e); void SSL_CTX_set_cookie_generate_cb(SSL_CTX *ctx, int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len)); void SSL_CTX_set_cookie_verify_cb(SSL_CTX *ctx, int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len)); void SSL_CTX_set_psk_client_callback(SSL_CTX *ctx, unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len)); void SSL_set_psk_client_callback(SSL *ssl, unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len)); void SSL_CTX_set_psk_server_callback(SSL_CTX *ctx, unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len)); void SSL_set_psk_server_callback(SSL *ssl, unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len)); int SSL_CTX_use_psk_identity_hint(SSL_CTX *ctx, const char *identity_hint); int SSL_use_psk_identity_hint(SSL *s, const char *identity_hint); const char *SSL_get_psk_identity_hint(const SSL *s); const char *SSL_get_psk_identity(const SSL *s); # 958 "/usr/include/openssl/ssl.h" 3 4 struct ssl_st { int version; int type; const SSL_METHOD *method; BIO *rbio; BIO *wbio; BIO *bbio; # 986 "/usr/include/openssl/ssl.h" 3 4 int rwstate; int in_handshake; int (*handshake_func)(SSL *); # 1000 "/usr/include/openssl/ssl.h" 3 4 int server; int new_session; int quiet_shutdown; int shutdown; int state; int rstate; BUF_MEM *init_buf; void *init_msg; int init_num; int init_off; unsigned char *packet; unsigned int packet_length; struct ssl2_state_st *s2; struct ssl3_state_st *s3; struct dtls1_state_st *d1; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg); void *msg_callback_arg; int hit; X509_VERIFY_PARAM *param; struct stack_st_SSL_CIPHER *cipher_list; struct stack_st_SSL_CIPHER *cipher_list_by_id; int mac_flags; EVP_CIPHER_CTX *enc_read_ctx; EVP_MD_CTX *read_hash; COMP_CTX *expand; EVP_CIPHER_CTX *enc_write_ctx; EVP_MD_CTX *write_hash; COMP_CTX *compress; # 1070 "/usr/include/openssl/ssl.h" 3 4 struct cert_st *cert; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; SSL_SESSION *session; GEN_SESSION_CB generate_session_id; int verify_mode; int (*verify_callback)(int ok,X509_STORE_CTX *ctx); void (*info_callback)(const SSL *ssl,int type,int val); int error; int error_code; KSSL_CTX *kssl_ctx; unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len); unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len); SSL_CTX *ctx; int debug; long verify_result; CRYPTO_EX_DATA ex_data; struct stack_st_X509_NAME *client_CA; int references; unsigned long options; unsigned long mode; long max_cert_list; int first_packet; int client_version; unsigned int max_send_fragment; void (*tlsext_debug_cb)(SSL *s, int client_server, int type, unsigned char *data, int len, void *arg); void *tlsext_debug_arg; char *tlsext_hostname; int servername_done; int tlsext_status_type; int tlsext_status_expected; struct stack_st_OCSP_RESPID *tlsext_ocsp_ids; X509_EXTENSIONS *tlsext_ocsp_exts; unsigned char *tlsext_ocsp_resp; int tlsext_ocsp_resplen; int tlsext_ticket_expected; void *tlsext_opaque_prf_input; size_t tlsext_opaque_prf_input_len; TLS_SESSION_TICKET_EXT *tlsext_session_ticket; tls_session_ticket_ext_cb_fn tls_session_ticket_ext_cb; void *tls_session_ticket_ext_cb_arg; tls_session_secret_cb_fn tls_session_secret_cb; void *tls_session_secret_cb_arg; SSL_CTX * initial_ctx; }; # 1 "/usr/include/openssl/ssl2.h" 1 3 4 # 158 "/usr/include/openssl/ssl2.h" 3 4 typedef struct ssl2_state_st { int three_byte_header; int clear_text; int escape; int ssl2_rollback; unsigned int wnum; int wpend_tot; const unsigned char *wpend_buf; int wpend_off; int wpend_len; int wpend_ret; int rbuf_left; int rbuf_offs; unsigned char *rbuf; unsigned char *wbuf; unsigned char *write_ptr; unsigned int padding; unsigned int rlength; int ract_data_length; unsigned int wlength; int wact_data_length; unsigned char *ract_data; unsigned char *wact_data; unsigned char *mac_data; unsigned char *read_key; unsigned char *write_key; unsigned int challenge_length; unsigned char challenge[32]; unsigned int conn_id_length; unsigned char conn_id[16]; unsigned int key_material_length; unsigned char key_material[24*2]; unsigned long read_sequence; unsigned long write_sequence; struct { unsigned int conn_id_length; unsigned int cert_type; unsigned int cert_length; unsigned int csl; unsigned int clear; unsigned int enc; unsigned char ccl[32]; unsigned int cipher_spec_length; unsigned int session_id_length; unsigned int clen; unsigned int rlen; } tmp; } SSL2_STATE; # 1179 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/ssl3.h" 1 3 4 # 125 "/usr/include/openssl/ssl3.h" 3 4 # 1 "/usr/include/openssl/ssl.h" 1 3 4 # 126 "/usr/include/openssl/ssl3.h" 2 3 4 # 342 "/usr/include/openssl/ssl3.h" 3 4 typedef struct ssl3_record_st { int type; unsigned int length; unsigned int off; unsigned char *data; unsigned char *input; unsigned char *comp; unsigned long epoch; unsigned char seq_num[8]; } SSL3_RECORD; typedef struct ssl3_buffer_st { unsigned char *buf; size_t len; int offset; int left; } SSL3_BUFFER; # 394 "/usr/include/openssl/ssl3.h" 3 4 typedef struct ssl3_state_st { long flags; int delay_buf_pop_ret; unsigned char read_sequence[8]; int read_mac_secret_size; unsigned char read_mac_secret[64]; unsigned char write_sequence[8]; int write_mac_secret_size; unsigned char write_mac_secret[64]; unsigned char server_random[32]; unsigned char client_random[32]; int need_empty_fragments; int empty_fragment_done; int init_extra; SSL3_BUFFER rbuf; SSL3_BUFFER wbuf; SSL3_RECORD rrec; SSL3_RECORD wrec; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[4]; unsigned int handshake_fragment_len; unsigned int wnum; int wpend_tot; int wpend_type; int wpend_ret; const unsigned char *wpend_buf; BIO *handshake_buffer; EVP_MD_CTX **handshake_dgst; int change_cipher_spec; int warn_alert; int fatal_alert; int alert_dispatch; unsigned char send_alert[2]; int renegotiate; int total_renegotiations; int num_renegotiations; int in_read_app_data; void *client_opaque_prf_input; size_t client_opaque_prf_input_len; void *server_opaque_prf_input; size_t server_opaque_prf_input_len; struct { unsigned char cert_verify_md[64*2]; unsigned char finish_md[64*2]; int finish_md_len; unsigned char peer_finish_md[64*2]; int peer_finish_md_len; unsigned long message_size; int message_type; const SSL_CIPHER *new_cipher; DH *dh; int next_state; int reuse_message; int cert_req; int ctype_num; char ctype[9]; struct stack_st_X509_NAME *ca_names; int use_rsa_tmp; int key_block_length; unsigned char *key_block; const EVP_CIPHER *new_sym_enc; const EVP_MD *new_hash; int new_mac_pkey_type; int new_mac_secret_size; const SSL_COMP *new_compression; int cert_request; } tmp; unsigned char previous_client_finished[64]; unsigned char previous_client_finished_len; unsigned char previous_server_finished[64]; unsigned char previous_server_finished_len; int send_connection_binding; } SSL3_STATE; # 1180 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/tls1.h" 1 3 4 # 223 "/usr/include/openssl/tls1.h" 3 4 const char *SSL_get_servername(const SSL *s, const int type) ; int SSL_get_servername_type(const SSL *s) ; # 523 "/usr/include/openssl/tls1.h" 3 4 struct tls_session_ticket_ext_st { unsigned short length; void *data; }; # 1181 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/dtls1.h" 1 3 4 # 64 "/usr/include/openssl/dtls1.h" 3 4 # 1 "/usr/include/openssl/pqueue.h" 1 3 4 # 65 "/usr/include/openssl/pqueue.h" 3 4 # 1 "/usr/include/string.h" 1 3 4 # 29 "/usr/include/string.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 165 "/usr/include/string.h" 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 66 "/usr/include/openssl/pqueue.h" 2 3 4 typedef struct _pqueue *pqueue; typedef struct _pitem { unsigned char priority[8]; void *data; struct _pitem *next; } pitem; typedef struct _pitem *piterator; pitem *pitem_new(unsigned char *prio64be, void *data); void pitem_free(pitem *item); pqueue pqueue_new(void); void pqueue_free(pqueue pq); pitem *pqueue_insert(pqueue pq, pitem *item); pitem *pqueue_peek(pqueue pq); pitem *pqueue_pop(pqueue pq); pitem *pqueue_find(pqueue pq, unsigned char *prio64be); pitem *pqueue_iterator(pqueue pq); pitem *pqueue_next(piterator *iter); void pqueue_print(pqueue pq); int pqueue_size(pqueue pq); # 65 "/usr/include/openssl/dtls1.h" 2 3 4 # 75 "/usr/include/openssl/dtls1.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 29 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/sys/time.h" 2 3 4 # 39 "/usr/include/sys/time.h" 3 4 # 57 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)); # 191 "/usr/include/sys/time.h" 3 4 # 76 "/usr/include/openssl/dtls1.h" 2 3 4 # 109 "/usr/include/openssl/dtls1.h" 3 4 typedef struct dtls1_bitmap_st { unsigned long map; unsigned char max_seq_num[8]; } DTLS1_BITMAP; struct dtls1_retransmit_state { EVP_CIPHER_CTX *enc_write_ctx; EVP_MD_CTX *write_hash; COMP_CTX *compress; SSL_SESSION *session; unsigned short epoch; }; struct hm_header_st { unsigned char type; unsigned long msg_len; unsigned short seq; unsigned long frag_off; unsigned long frag_len; unsigned int is_ccs; struct dtls1_retransmit_state saved_retransmit_state; }; struct ccs_header_st { unsigned char type; unsigned short seq; }; struct dtls1_timeout_st { unsigned int read_timeouts; unsigned int write_timeouts; unsigned int num_alerts; }; typedef struct record_pqueue_st { unsigned short epoch; pqueue q; } record_pqueue; typedef struct hm_fragment_st { struct hm_header_st msg_header; unsigned char *fragment; } hm_fragment; typedef struct dtls1_state_st { unsigned int send_cookie; unsigned char cookie[256]; unsigned char rcvd_cookie[256]; unsigned int cookie_len; unsigned short r_epoch; unsigned short w_epoch; DTLS1_BITMAP bitmap; DTLS1_BITMAP next_bitmap; unsigned short handshake_write_seq; unsigned short next_handshake_write_seq; unsigned short handshake_read_seq; unsigned char last_write_sequence[8]; record_pqueue unprocessed_rcds; record_pqueue processed_rcds; pqueue buffered_messages; pqueue sent_messages; record_pqueue buffered_app_data; unsigned int mtu; struct hm_header_st w_msg_hdr; struct hm_header_st r_msg_hdr; struct dtls1_timeout_st timeout; struct timeval next_timeout; unsigned short timeout_duration; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[12]; unsigned int handshake_fragment_len; unsigned int retransmitting; unsigned int change_cipher_spec_ok; unsigned int listen; } DTLS1_STATE; typedef struct dtls1_record_data_st { unsigned char *packet; unsigned int packet_length; SSL3_BUFFER rbuf; SSL3_RECORD rrec; } DTLS1_RECORD_DATA; # 1182 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/ssl23.h" 1 3 4 # 1183 "/usr/include/openssl/ssl.h" 2 3 4 # 1243 "/usr/include/openssl/ssl.h" 3 4 size_t SSL_get_finished(const SSL *s, void *buf, size_t count); size_t SSL_get_peer_finished(const SSL *s, void *buf, size_t count); # 1281 "/usr/include/openssl/ssl.h" 3 4 SSL_SESSION *PEM_read_bio_SSL_SESSION(BIO *bp, SSL_SESSION **x, pem_password_cb *cb, void *u); SSL_SESSION *PEM_read_SSL_SESSION(FILE *fp, SSL_SESSION **x, pem_password_cb *cb, void *u); int PEM_write_bio_SSL_SESSION(BIO *bp, SSL_SESSION *x); int PEM_write_SSL_SESSION(FILE *fp, SSL_SESSION *x); # 1447 "/usr/include/openssl/ssl.h" 3 4 BIO_METHOD *BIO_f_ssl(void); BIO *BIO_new_ssl(SSL_CTX *ctx,int client); BIO *BIO_new_ssl_connect(SSL_CTX *ctx); BIO *BIO_new_buffer_ssl_connect(SSL_CTX *ctx); int BIO_ssl_copy_session_id(BIO *to,BIO *from); void BIO_ssl_shutdown(BIO *ssl_bio); int SSL_CTX_set_cipher_list(SSL_CTX *,const char *str); SSL_CTX *SSL_CTX_new(const SSL_METHOD *meth); void SSL_CTX_free(SSL_CTX *); long SSL_CTX_set_timeout(SSL_CTX *ctx,long t); long SSL_CTX_get_timeout(const SSL_CTX *ctx); X509_STORE *SSL_CTX_get_cert_store(const SSL_CTX *); void SSL_CTX_set_cert_store(SSL_CTX *,X509_STORE *); int SSL_want(const SSL *s); int SSL_clear(SSL *s); void SSL_CTX_flush_sessions(SSL_CTX *ctx,long tm); const SSL_CIPHER *SSL_get_current_cipher(const SSL *s); int SSL_CIPHER_get_bits(const SSL_CIPHER *c,int *alg_bits); char * SSL_CIPHER_get_version(const SSL_CIPHER *c); const char * SSL_CIPHER_get_name(const SSL_CIPHER *c); int SSL_get_fd(const SSL *s); int SSL_get_rfd(const SSL *s); int SSL_get_wfd(const SSL *s); const char * SSL_get_cipher_list(const SSL *s,int n); char * SSL_get_shared_ciphers(const SSL *s, char *buf, int len); int SSL_get_read_ahead(const SSL * s); int SSL_pending(const SSL *s); int SSL_set_fd(SSL *s, int fd); int SSL_set_rfd(SSL *s, int fd); int SSL_set_wfd(SSL *s, int fd); void SSL_set_bio(SSL *s, BIO *rbio,BIO *wbio); BIO * SSL_get_rbio(const SSL *s); BIO * SSL_get_wbio(const SSL *s); int SSL_set_cipher_list(SSL *s, const char *str); void SSL_set_read_ahead(SSL *s, int yes); int SSL_get_verify_mode(const SSL *s); int SSL_get_verify_depth(const SSL *s); int (*SSL_get_verify_callback(const SSL *s))(int,X509_STORE_CTX *); void SSL_set_verify(SSL *s, int mode, int (*callback)(int ok,X509_STORE_CTX *ctx)); void SSL_set_verify_depth(SSL *s, int depth); int SSL_use_RSAPrivateKey(SSL *ssl, RSA *rsa); int SSL_use_RSAPrivateKey_ASN1(SSL *ssl, unsigned char *d, long len); int SSL_use_PrivateKey(SSL *ssl, EVP_PKEY *pkey); int SSL_use_PrivateKey_ASN1(int pk,SSL *ssl, const unsigned char *d, long len); int SSL_use_certificate(SSL *ssl, X509 *x); int SSL_use_certificate_ASN1(SSL *ssl, const unsigned char *d, int len); int SSL_use_RSAPrivateKey_file(SSL *ssl, const char *file, int type); int SSL_use_PrivateKey_file(SSL *ssl, const char *file, int type); int SSL_use_certificate_file(SSL *ssl, const char *file, int type); int SSL_CTX_use_RSAPrivateKey_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_PrivateKey_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_certificate_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_certificate_chain_file(SSL_CTX *ctx, const char *file); struct stack_st_X509_NAME *SSL_load_client_CA_file(const char *file); int SSL_add_file_cert_subjects_to_stack(struct stack_st_X509_NAME *stackCAs, const char *file); int SSL_add_dir_cert_subjects_to_stack(struct stack_st_X509_NAME *stackCAs, const char *dir); void SSL_load_error_strings(void ); const char *SSL_state_string(const SSL *s); const char *SSL_rstate_string(const SSL *s); const char *SSL_state_string_long(const SSL *s); const char *SSL_rstate_string_long(const SSL *s); long SSL_SESSION_get_time(const SSL_SESSION *s); long SSL_SESSION_set_time(SSL_SESSION *s, long t); long SSL_SESSION_get_timeout(const SSL_SESSION *s); long SSL_SESSION_set_timeout(SSL_SESSION *s, long t); void SSL_copy_session_id(SSL *to,const SSL *from); SSL_SESSION *SSL_SESSION_new(void); const unsigned char *SSL_SESSION_get_id(const SSL_SESSION *s, unsigned int *len); int SSL_SESSION_print_fp(FILE *fp,const SSL_SESSION *ses); int SSL_SESSION_print(BIO *fp,const SSL_SESSION *ses); void SSL_SESSION_free(SSL_SESSION *ses); int i2d_SSL_SESSION(SSL_SESSION *in,unsigned char **pp); int SSL_set_session(SSL *to, SSL_SESSION *session); int SSL_CTX_add_session(SSL_CTX *s, SSL_SESSION *c); int SSL_CTX_remove_session(SSL_CTX *,SSL_SESSION *c); int SSL_CTX_set_generate_session_id(SSL_CTX *, GEN_SESSION_CB); int SSL_set_generate_session_id(SSL *, GEN_SESSION_CB); int SSL_has_matching_session_id(const SSL *ssl, const unsigned char *id, unsigned int id_len); SSL_SESSION *d2i_SSL_SESSION(SSL_SESSION **a,const unsigned char **pp, long length); X509 * SSL_get_peer_certificate(const SSL *s); struct stack_st_X509 *SSL_get_peer_cert_chain(const SSL *s); int SSL_CTX_get_verify_mode(const SSL_CTX *ctx); int SSL_CTX_get_verify_depth(const SSL_CTX *ctx); int (*SSL_CTX_get_verify_callback(const SSL_CTX *ctx))(int,X509_STORE_CTX *); void SSL_CTX_set_verify(SSL_CTX *ctx,int mode, int (*callback)(int, X509_STORE_CTX *)); void SSL_CTX_set_verify_depth(SSL_CTX *ctx,int depth); void SSL_CTX_set_cert_verify_callback(SSL_CTX *ctx, int (*cb)(X509_STORE_CTX *,void *), void *arg); int SSL_CTX_use_RSAPrivateKey(SSL_CTX *ctx, RSA *rsa); int SSL_CTX_use_RSAPrivateKey_ASN1(SSL_CTX *ctx, const unsigned char *d, long len); int SSL_CTX_use_PrivateKey(SSL_CTX *ctx, EVP_PKEY *pkey); int SSL_CTX_use_PrivateKey_ASN1(int pk,SSL_CTX *ctx, const unsigned char *d, long len); int SSL_CTX_use_certificate(SSL_CTX *ctx, X509 *x); int SSL_CTX_use_certificate_ASN1(SSL_CTX *ctx, int len, const unsigned char *d); void SSL_CTX_set_default_passwd_cb(SSL_CTX *ctx, pem_password_cb *cb); void SSL_CTX_set_default_passwd_cb_userdata(SSL_CTX *ctx, void *u); int SSL_CTX_check_private_key(const SSL_CTX *ctx); int SSL_check_private_key(const SSL *ctx); int SSL_CTX_set_session_id_context(SSL_CTX *ctx,const unsigned char *sid_ctx, unsigned int sid_ctx_len); SSL * SSL_new(SSL_CTX *ctx); int SSL_set_session_id_context(SSL *ssl,const unsigned char *sid_ctx, unsigned int sid_ctx_len); int SSL_CTX_set_purpose(SSL_CTX *s, int purpose); int SSL_set_purpose(SSL *s, int purpose); int SSL_CTX_set_trust(SSL_CTX *s, int trust); int SSL_set_trust(SSL *s, int trust); int SSL_CTX_set1_param(SSL_CTX *ctx, X509_VERIFY_PARAM *vpm); int SSL_set1_param(SSL *ssl, X509_VERIFY_PARAM *vpm); void SSL_free(SSL *ssl); int SSL_accept(SSL *ssl); int SSL_connect(SSL *ssl); int SSL_read(SSL *ssl,void *buf,int num); int SSL_peek(SSL *ssl,void *buf,int num); int SSL_write(SSL *ssl,const void *buf,int num); long SSL_ctrl(SSL *ssl,int cmd, long larg, void *parg); long SSL_callback_ctrl(SSL *, int, void (*)(void)); long SSL_CTX_ctrl(SSL_CTX *ctx,int cmd, long larg, void *parg); long SSL_CTX_callback_ctrl(SSL_CTX *, int, void (*)(void)); int SSL_get_error(const SSL *s,int ret_code); const char *SSL_get_version(const SSL *s); int SSL_CTX_set_ssl_version(SSL_CTX *ctx, const SSL_METHOD *meth); const SSL_METHOD *SSLv2_method(void); const SSL_METHOD *SSLv2_server_method(void); const SSL_METHOD *SSLv2_client_method(void); const SSL_METHOD *SSLv3_method(void); const SSL_METHOD *SSLv3_server_method(void); const SSL_METHOD *SSLv3_client_method(void); const SSL_METHOD *SSLv23_method(void); const SSL_METHOD *SSLv23_server_method(void); const SSL_METHOD *SSLv23_client_method(void); const SSL_METHOD *TLSv1_method(void); const SSL_METHOD *TLSv1_server_method(void); const SSL_METHOD *TLSv1_client_method(void); const SSL_METHOD *DTLSv1_method(void); const SSL_METHOD *DTLSv1_server_method(void); const SSL_METHOD *DTLSv1_client_method(void); struct stack_st_SSL_CIPHER *SSL_get_ciphers(const SSL *s); int SSL_do_handshake(SSL *s); int SSL_renegotiate(SSL *s); int SSL_renegotiate_pending(SSL *s); int SSL_shutdown(SSL *s); const SSL_METHOD *SSL_get_ssl_method(SSL *s); int SSL_set_ssl_method(SSL *s, const SSL_METHOD *method); const char *SSL_alert_type_string_long(int value); const char *SSL_alert_type_string(int value); const char *SSL_alert_desc_string_long(int value); const char *SSL_alert_desc_string(int value); void SSL_set_client_CA_list(SSL *s, struct stack_st_X509_NAME *name_list); void SSL_CTX_set_client_CA_list(SSL_CTX *ctx, struct stack_st_X509_NAME *name_list); struct stack_st_X509_NAME *SSL_get_client_CA_list(const SSL *s); struct stack_st_X509_NAME *SSL_CTX_get_client_CA_list(const SSL_CTX *s); int SSL_add_client_CA(SSL *ssl,X509 *x); int SSL_CTX_add_client_CA(SSL_CTX *ctx,X509 *x); void SSL_set_connect_state(SSL *s); void SSL_set_accept_state(SSL *s); long SSL_get_default_timeout(const SSL *s); int SSL_library_init(void ); char *SSL_CIPHER_description(const SSL_CIPHER *,char *buf,int size); struct stack_st_X509_NAME *SSL_dup_CA_list(struct stack_st_X509_NAME *sk); SSL *SSL_dup(SSL *ssl); X509 *SSL_get_certificate(const SSL *ssl); struct evp_pkey_st *SSL_get_privatekey(SSL *ssl); void SSL_CTX_set_quiet_shutdown(SSL_CTX *ctx,int mode); int SSL_CTX_get_quiet_shutdown(const SSL_CTX *ctx); void SSL_set_quiet_shutdown(SSL *ssl,int mode); int SSL_get_quiet_shutdown(const SSL *ssl); void SSL_set_shutdown(SSL *ssl,int mode); int SSL_get_shutdown(const SSL *ssl); int SSL_version(const SSL *ssl); int SSL_CTX_set_default_verify_paths(SSL_CTX *ctx); int SSL_CTX_load_verify_locations(SSL_CTX *ctx, const char *CAfile, const char *CApath); SSL_SESSION *SSL_get_session(const SSL *ssl); SSL_SESSION *SSL_get1_session(SSL *ssl); SSL_CTX *SSL_get_SSL_CTX(const SSL *ssl); SSL_CTX *SSL_set_SSL_CTX(SSL *ssl, SSL_CTX* ctx); void SSL_set_info_callback(SSL *ssl, void (*cb)(const SSL *ssl,int type,int val)); void (*SSL_get_info_callback(const SSL *ssl))(const SSL *ssl,int type,int val); int SSL_state(const SSL *ssl); void SSL_set_verify_result(SSL *ssl,long v); long SSL_get_verify_result(const SSL *ssl); int SSL_set_ex_data(SSL *ssl,int idx,void *data); void *SSL_get_ex_data(const SSL *ssl,int idx); int SSL_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_SESSION_set_ex_data(SSL_SESSION *ss,int idx,void *data); void *SSL_SESSION_get_ex_data(const SSL_SESSION *ss,int idx); int SSL_SESSION_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_CTX_set_ex_data(SSL_CTX *ssl,int idx,void *data); void *SSL_CTX_get_ex_data(const SSL_CTX *ssl,int idx); int SSL_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_get_ex_data_X509_STORE_CTX_idx(void ); # 1749 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_set_tmp_rsa_callback(SSL_CTX *ctx, RSA *(*cb)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_rsa_callback(SSL *ssl, RSA *(*cb)(SSL *ssl,int is_export, int keylength)); void SSL_CTX_set_tmp_dh_callback(SSL_CTX *ctx, DH *(*dh)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_dh_callback(SSL *ssl, DH *(*dh)(SSL *ssl,int is_export, int keylength)); const COMP_METHOD *SSL_get_current_compression(SSL *s); const COMP_METHOD *SSL_get_current_expansion(SSL *s); const char *SSL_COMP_get_name(const COMP_METHOD *comp); struct stack_st_SSL_COMP *SSL_COMP_get_compression_methods(void); int SSL_COMP_add_compression_method(int id,COMP_METHOD *cm); # 1781 "/usr/include/openssl/ssl.h" 3 4 int SSL_set_session_ticket_ext(SSL *s, void *ext_data, int ext_len); int SSL_set_session_ticket_ext_cb(SSL *s, tls_session_ticket_ext_cb_fn cb, void *arg); int SSL_set_session_secret_cb(SSL *s, tls_session_secret_cb_fn tls_session_secret_cb, void *arg); void ERR_load_SSL_strings(void); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['openssl/ssl.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.ssl(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:684) TESTING: checkSharedLibrary from config.packages.ssl(config/BuildSystem/config/package.py:684) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/pdflatex...found Defined make macro "PDFLATEX" to "/gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/pdflatex" Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/bfort...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/bfort...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/bfort...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/bfort...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/bfort...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/bfort...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/bfort...not found Checking for program /usr/lib64/qt-3.3/bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /opt/ibutils/bin/bfort...not found Checking for program /usr/local/sbin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/bin/win32fe/bfort...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/doctext...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/doctext...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/doctext...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/doctext...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/doctext...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/doctext...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/doctext...not found Checking for program /usr/lib64/qt-3.3/bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /opt/ibutils/bin/doctext...not found Checking for program /usr/local/sbin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/bin/win32fe/doctext...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mapnames...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/mapnames...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/mapnames...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/mapnames...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/mapnames...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mapnames...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/mapnames...not found Checking for program /usr/lib64/qt-3.3/bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /opt/ibutils/bin/mapnames...not found Checking for program /usr/local/sbin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/bin/win32fe/mapnames...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/bib2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/bib2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/bib2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/bib2html...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/bib2html...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/bib2html...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/bib2html...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/bib2html...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/bib2html...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/bib2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/bib2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/bib2html...not found Checking for program /usr/lib64/qt-3.3/bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /opt/ibutils/bin/bib2html...not found Checking for program /usr/local/sbin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/bib2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bib2html...not found Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs Pushing language C ================================================================================ TEST configureLibrary from config.packages.sowing(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:626) TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:626) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing or a directory starting with sowing Found a copy of SOWING in sowing Have to rebuild SOWING, /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/sowing.petscconf != /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib/petsc/conf/pkg.conf.sowing =============================================================================== Running configure on SOWING; this may take several minutes =============================================================================== Executing: cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing && ./configure --prefix=/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/latex checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: include/sowingconfig.h is unchanged config.status: executing bib2html commands =============================================================================== Running make on SOWING; this may take several minutes =============================================================================== Executing: cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing && /usr/bin/gmake clean stdout: for dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/sys' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bfort' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml/testing' gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/mapnames' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bib2html' gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src' gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/docs' rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& /usr/bin/gmake clean) gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/docs/doctext' rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/docs/doctext' gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Executing: cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing && /usr/bin/gmake stdout: (cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bfort' gcc -DBASEDEF='"/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/bfort-base.txt"' -DBASEPATH='"/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/bfort-base.txt"' -DBASEPATH='"/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' gmake[1]: Nothing to be done for `ALL'. gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/mapnames' =============================================================================== Running make install on SOWING; this may take several minutes =============================================================================== Executing: cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing && /usr/bin/gmake install stdout: /usr/bin/install -c bin/bib2html /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bib2html /usr/bin/install -c src/doctext/doctext /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/doctext /usr/bin/install -c src/doctext/doc2lt /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/tohtml if [ "`cd bin && pwd`" != "`cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bfort /usr/bin/install -c src/mapnames/mapnames /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/man/man1/bfort.1 ;\ fi ********Output of running make on SOWING follows ******* checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/latex checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: include/sowingconfig.h is unchanged config.status: executing bib2html commandsfor dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/sys' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bfort' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml/testing' gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/mapnames' gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bib2html' gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src' gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/docs' rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& /usr/bin/gmake clean) gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/docs/doctext' rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/docs/doctext' gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bfort' gcc -DBASEDEF='"/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/bfort-base.txt"' -DBASEPATH='"/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/bfort-base.txt"' -DBASEPATH='"/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' gmake[1]: Nothing to be done for `ALL'. gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/externalpackages/sowing/src/mapnames'../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xc19): warning: the use of `mktemp' is dangerous, better use `mkstemp' ../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xc19): warning: the use of `mktemp' is dangerous, better use `mkstemp' doc2lt.cc:168:35: warning: missing terminating ' character comment this out because I don't want to fix it. I changed DocReadFuncSynopsis to allowing mapping names for html ^ /usr/bin/install -c bin/bib2html /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bib2html /usr/bin/install -c src/doctext/doctext /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/doctext /usr/bin/install -c src/doctext/doc2lt /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/tohtml if [ "`cd bin && pwd`" != "`cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bfort /usr/bin/install -c src/mapnames/mapnames /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/share/man/man1/bfort.1 ;\ fi********End of Output of running make on SOWING ******* Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download SOWING: ['/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] ================================================================================ TEST checkSharedLibrary from config.packages.sowing(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:684) TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:684) By default we don't care about checking if the library is shared Popping language C Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bfort...found Defined make macro "BFORT" to "/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bfort" Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/doctext...found Defined make macro "DOCTEXT" to "/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/doctext" Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/mapnames...found Defined make macro "MAPNAMES" to "/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/mapnames" Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bib2html...found Defined make macro "BIB2HTML" to "/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bib2html" Running /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bfort to generate fortran stubs ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.pthread(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/pthread.py:19) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:19) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Checking for headers Compiler specific search PTHREAD: ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.headers -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 23 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 4 # 74 "/usr/include/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) __attribute__ ((__nothrow__)); extern int unshare (int __flags) __attribute__ ((__nothrow__)); extern int sched_getcpu (void) __attribute__ ((__nothrow__)); struct __sched_param { int __sched_priority; }; # 116 "/usr/include/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 199 "/usr/include/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__)); extern int sched_yield (void) __attribute__ ((__nothrow__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__)); # 126 "/usr/include/sched.h" 3 4 # 26 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 30 "/usr/include/time.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 417 "/usr/include/time.h" 3 4 # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/setjmp.h" 1 3 4 # 27 "/usr/include/bits/setjmp.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 31 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; # 115 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 147 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 182 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 220 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 263 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 413 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__)); # 478 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 490 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 524 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 664 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 676 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 717 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 790 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (__const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 872 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 984 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 1028 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 1095 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__)); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) __attribute__ ((__nothrow__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 1129 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__)); # 1143 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Popping language C All intermediate test results are stored in /tmp/petsc-6utHXg/config.packages.pthread Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.pthread/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.pthread/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.pthread/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.packages.pthread/conftest.c:6:12: warning: unused variable ‘a’ [-Wunused-variable] cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.packages.pthread /tmp/petsc-6utHXg/config.packages.pthread/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.packages.pthread/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.packages.pthread/conftest.c" # 1 "/tmp/petsc-6utHXg/config.packages.pthread/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.packages.pthread/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.packages.pthread/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.packages.pthread/conftest.c" 2 # 1 "/usr/include/sys/sysctl.h" 1 3 4 # 22 "/usr/include/sys/sysctl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/sys/sysctl.h" 2 3 4 # 44 "/usr/include/sys/sysctl.h" 3 4 # 1 "/usr/include/linux/sysctl.h" 1 3 4 # 28 "/usr/include/linux/sysctl.h" 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 29 "/usr/include/linux/sysctl.h" 2 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 30 "/usr/include/linux/sysctl.h" 2 3 4 struct completion; struct __sysctl_args { int *name; int nlen; void *oldval; size_t *oldlenp; void *newval; size_t newlen; unsigned long __unused[4]; }; enum { CTL_KERN=1, CTL_VM=2, CTL_NET=3, CTL_PROC=4, CTL_FS=5, CTL_DEBUG=6, CTL_DEV=7, CTL_BUS=8, CTL_ABI=9, CTL_CPU=10, CTL_ARLAN=254, CTL_S390DBF=5677, CTL_SUNRPC=7249, CTL_PM=9899, CTL_FRV=9898, }; enum { CTL_BUS_ISA=1 }; enum { INOTIFY_MAX_USER_INSTANCES=1, INOTIFY_MAX_USER_WATCHES=2, INOTIFY_MAX_QUEUED_EVENTS=3 }; enum { KERN_OSTYPE=1, KERN_OSRELEASE=2, KERN_OSREV=3, KERN_VERSION=4, KERN_SECUREMASK=5, KERN_PROF=6, KERN_NODENAME=7, KERN_DOMAINNAME=8, KERN_PANIC=15, KERN_REALROOTDEV=16, KERN_SPARC_REBOOT=21, KERN_CTLALTDEL=22, KERN_PRINTK=23, KERN_NAMETRANS=24, KERN_PPC_HTABRECLAIM=25, KERN_PPC_ZEROPAGED=26, KERN_PPC_POWERSAVE_NAP=27, KERN_MODPROBE=28, KERN_SG_BIG_BUFF=29, KERN_ACCT=30, KERN_PPC_L2CR=31, KERN_RTSIGNR=32, KERN_RTSIGMAX=33, KERN_SHMMAX=34, KERN_MSGMAX=35, KERN_MSGMNB=36, KERN_MSGPOOL=37, KERN_SYSRQ=38, KERN_MAX_THREADS=39, KERN_RANDOM=40, KERN_SHMALL=41, KERN_MSGMNI=42, KERN_SEM=43, KERN_SPARC_STOP_A=44, KERN_SHMMNI=45, KERN_OVERFLOWUID=46, KERN_OVERFLOWGID=47, KERN_SHMPATH=48, KERN_HOTPLUG=49, KERN_IEEE_EMULATION_WARNINGS=50, KERN_S390_USER_DEBUG_LOGGING=51, KERN_CORE_USES_PID=52, KERN_TAINTED=53, KERN_CADPID=54, KERN_PIDMAX=55, KERN_CORE_PATTERN=56, KERN_PANIC_ON_OOPS=57, KERN_HPPA_PWRSW=58, KERN_HPPA_UNALIGNED=59, KERN_PRINTK_RATELIMIT=60, KERN_PRINTK_RATELIMIT_BURST=61, KERN_PTY=62, KERN_NGROUPS_MAX=63, KERN_SPARC_SCONS_PWROFF=64, KERN_HZ_TIMER=65, KERN_UNKNOWN_NMI_PANIC=66, KERN_BOOTLOADER_TYPE=67, KERN_RANDOMIZE=68, KERN_SETUID_DUMPABLE=69, KERN_SPIN_RETRY=70, KERN_ACPI_VIDEO_FLAGS=71, KERN_IA64_UNALIGNED=72, KERN_COMPAT_LOG=73, KERN_MAX_LOCK_DEPTH=74, KERN_NMI_WATCHDOG=75, KERN_PANIC_ON_NMI=76, }; enum { VM_UNUSED1=1, VM_UNUSED2=2, VM_UNUSED3=3, VM_UNUSED4=4, VM_OVERCOMMIT_MEMORY=5, VM_UNUSED5=6, VM_UNUSED7=7, VM_UNUSED8=8, VM_UNUSED9=9, VM_PAGE_CLUSTER=10, VM_DIRTY_BACKGROUND=11, VM_DIRTY_RATIO=12, VM_DIRTY_WB_CS=13, VM_DIRTY_EXPIRE_CS=14, VM_NR_PDFLUSH_THREADS=15, VM_OVERCOMMIT_RATIO=16, VM_PAGEBUF=17, VM_HUGETLB_PAGES=18, VM_SWAPPINESS=19, VM_LOWMEM_RESERVE_RATIO=20, VM_MIN_FREE_KBYTES=21, VM_MAX_MAP_COUNT=22, VM_LAPTOP_MODE=23, VM_BLOCK_DUMP=24, VM_HUGETLB_GROUP=25, VM_VFS_CACHE_PRESSURE=26, VM_LEGACY_VA_LAYOUT=27, VM_SWAP_TOKEN_TIMEOUT=28, VM_DROP_PAGECACHE=29, VM_PERCPU_PAGELIST_FRACTION=30, VM_ZONE_RECLAIM_MODE=31, VM_MIN_UNMAPPED=32, VM_PANIC_ON_OOM=33, VM_VDSO_ENABLED=34, VM_MIN_SLAB=35, }; enum { NET_CORE=1, NET_ETHER=2, NET_802=3, NET_UNIX=4, NET_IPV4=5, NET_IPX=6, NET_ATALK=7, NET_NETROM=8, NET_AX25=9, NET_BRIDGE=10, NET_ROSE=11, NET_IPV6=12, NET_X25=13, NET_TR=14, NET_DECNET=15, NET_ECONET=16, NET_SCTP=17, NET_LLC=18, NET_NETFILTER=19, NET_DCCP=20, NET_IRDA=412, }; enum { RANDOM_POOLSIZE=1, RANDOM_ENTROPY_COUNT=2, RANDOM_READ_THRESH=3, RANDOM_WRITE_THRESH=4, RANDOM_BOOT_ID=5, RANDOM_UUID=6 }; enum { PTY_MAX=1, PTY_NR=2 }; enum { BUS_ISA_MEM_BASE=1, BUS_ISA_PORT_BASE=2, BUS_ISA_PORT_SHIFT=3 }; enum { NET_CORE_WMEM_MAX=1, NET_CORE_RMEM_MAX=2, NET_CORE_WMEM_DEFAULT=3, NET_CORE_RMEM_DEFAULT=4, NET_CORE_MAX_BACKLOG=6, NET_CORE_FASTROUTE=7, NET_CORE_MSG_COST=8, NET_CORE_MSG_BURST=9, NET_CORE_OPTMEM_MAX=10, NET_CORE_HOT_LIST_LENGTH=11, NET_CORE_DIVERT_VERSION=12, NET_CORE_NO_CONG_THRESH=13, NET_CORE_NO_CONG=14, NET_CORE_LO_CONG=15, NET_CORE_MOD_CONG=16, NET_CORE_DEV_WEIGHT=17, NET_CORE_SOMAXCONN=18, NET_CORE_BUDGET=19, NET_CORE_AEVENT_ETIME=20, NET_CORE_AEVENT_RSEQTH=21, NET_CORE_WARNINGS=22, }; enum { NET_UNIX_DESTROY_DELAY=1, NET_UNIX_DELETE_DELAY=2, NET_UNIX_MAX_DGRAM_QLEN=3, }; enum { NET_NF_CONNTRACK_MAX=1, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_NF_CONNTRACK_UDP_TIMEOUT=10, NET_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_NF_CONNTRACK_BUCKETS=14, NET_NF_CONNTRACK_LOG_INVALID=15, NET_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_NF_CONNTRACK_TCP_LOOSE=17, NET_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_NF_CONNTRACK_COUNT=27, NET_NF_CONNTRACK_ICMPV6_TIMEOUT=28, NET_NF_CONNTRACK_FRAG6_TIMEOUT=29, NET_NF_CONNTRACK_FRAG6_LOW_THRESH=30, NET_NF_CONNTRACK_FRAG6_HIGH_THRESH=31, NET_NF_CONNTRACK_CHECKSUM=32, }; enum { NET_IPV4_FORWARD=8, NET_IPV4_DYNADDR=9, NET_IPV4_CONF=16, NET_IPV4_NEIGH=17, NET_IPV4_ROUTE=18, NET_IPV4_FIB_HASH=19, NET_IPV4_NETFILTER=20, NET_IPV4_TCP_TIMESTAMPS=33, NET_IPV4_TCP_WINDOW_SCALING=34, NET_IPV4_TCP_SACK=35, NET_IPV4_TCP_RETRANS_COLLAPSE=36, NET_IPV4_DEFAULT_TTL=37, NET_IPV4_AUTOCONFIG=38, NET_IPV4_NO_PMTU_DISC=39, NET_IPV4_TCP_SYN_RETRIES=40, NET_IPV4_IPFRAG_HIGH_THRESH=41, NET_IPV4_IPFRAG_LOW_THRESH=42, NET_IPV4_IPFRAG_TIME=43, NET_IPV4_TCP_MAX_KA_PROBES=44, NET_IPV4_TCP_KEEPALIVE_TIME=45, NET_IPV4_TCP_KEEPALIVE_PROBES=46, NET_IPV4_TCP_RETRIES1=47, NET_IPV4_TCP_RETRIES2=48, NET_IPV4_TCP_FIN_TIMEOUT=49, NET_IPV4_IP_MASQ_DEBUG=50, NET_TCP_SYNCOOKIES=51, NET_TCP_STDURG=52, NET_TCP_RFC1337=53, NET_TCP_SYN_TAILDROP=54, NET_TCP_MAX_SYN_BACKLOG=55, NET_IPV4_LOCAL_PORT_RANGE=56, NET_IPV4_ICMP_ECHO_IGNORE_ALL=57, NET_IPV4_ICMP_ECHO_IGNORE_BROADCASTS=58, NET_IPV4_ICMP_SOURCEQUENCH_RATE=59, NET_IPV4_ICMP_DESTUNREACH_RATE=60, NET_IPV4_ICMP_TIMEEXCEED_RATE=61, NET_IPV4_ICMP_PARAMPROB_RATE=62, NET_IPV4_ICMP_ECHOREPLY_RATE=63, NET_IPV4_ICMP_IGNORE_BOGUS_ERROR_RESPONSES=64, NET_IPV4_IGMP_MAX_MEMBERSHIPS=65, NET_TCP_TW_RECYCLE=66, NET_IPV4_ALWAYS_DEFRAG=67, NET_IPV4_TCP_KEEPALIVE_INTVL=68, NET_IPV4_INET_PEER_THRESHOLD=69, NET_IPV4_INET_PEER_MINTTL=70, NET_IPV4_INET_PEER_MAXTTL=71, NET_IPV4_INET_PEER_GC_MINTIME=72, NET_IPV4_INET_PEER_GC_MAXTIME=73, NET_TCP_ORPHAN_RETRIES=74, NET_TCP_ABORT_ON_OVERFLOW=75, NET_TCP_SYNACK_RETRIES=76, NET_TCP_MAX_ORPHANS=77, NET_TCP_MAX_TW_BUCKETS=78, NET_TCP_FACK=79, NET_TCP_REORDERING=80, NET_TCP_ECN=81, NET_TCP_DSACK=82, NET_TCP_MEM=83, NET_TCP_WMEM=84, NET_TCP_RMEM=85, NET_TCP_APP_WIN=86, NET_TCP_ADV_WIN_SCALE=87, NET_IPV4_NONLOCAL_BIND=88, NET_IPV4_ICMP_RATELIMIT=89, NET_IPV4_ICMP_RATEMASK=90, NET_TCP_TW_REUSE=91, NET_TCP_FRTO=92, NET_TCP_LOW_LATENCY=93, NET_IPV4_IPFRAG_SECRET_INTERVAL=94, NET_IPV4_IGMP_MAX_MSF=96, NET_TCP_NO_METRICS_SAVE=97, NET_TCP_DEFAULT_WIN_SCALE=105, NET_TCP_MODERATE_RCVBUF=106, NET_TCP_TSO_WIN_DIVISOR=107, NET_TCP_BIC_BETA=108, NET_IPV4_ICMP_ERRORS_USE_INBOUND_IFADDR=109, NET_TCP_CONG_CONTROL=110, NET_TCP_ABC=111, NET_IPV4_IPFRAG_MAX_DIST=112, NET_TCP_MTU_PROBING=113, NET_TCP_BASE_MSS=114, NET_IPV4_TCP_WORKAROUND_SIGNED_WINDOWS=115, NET_TCP_DMA_COPYBREAK=116, NET_TCP_SLOW_START_AFTER_IDLE=117, NET_CIPSOV4_CACHE_ENABLE=118, NET_CIPSOV4_CACHE_BUCKET_SIZE=119, NET_CIPSOV4_RBM_OPTFMT=120, NET_CIPSOV4_RBM_STRICTVALID=121, NET_TCP_AVAIL_CONG_CONTROL=122, NET_TCP_ALLOWED_CONG_CONTROL=123, NET_TCP_MAX_SSTHRESH=124, NET_TCP_FRTO_RESPONSE=125, }; enum { NET_IPV4_ROUTE_FLUSH=1, NET_IPV4_ROUTE_MIN_DELAY=2, NET_IPV4_ROUTE_MAX_DELAY=3, NET_IPV4_ROUTE_GC_THRESH=4, NET_IPV4_ROUTE_MAX_SIZE=5, NET_IPV4_ROUTE_GC_MIN_INTERVAL=6, NET_IPV4_ROUTE_GC_TIMEOUT=7, NET_IPV4_ROUTE_GC_INTERVAL=8, NET_IPV4_ROUTE_REDIRECT_LOAD=9, NET_IPV4_ROUTE_REDIRECT_NUMBER=10, NET_IPV4_ROUTE_REDIRECT_SILENCE=11, NET_IPV4_ROUTE_ERROR_COST=12, NET_IPV4_ROUTE_ERROR_BURST=13, NET_IPV4_ROUTE_GC_ELASTICITY=14, NET_IPV4_ROUTE_MTU_EXPIRES=15, NET_IPV4_ROUTE_MIN_PMTU=16, NET_IPV4_ROUTE_MIN_ADVMSS=17, NET_IPV4_ROUTE_SECRET_INTERVAL=18, NET_IPV4_ROUTE_GC_MIN_INTERVAL_MS=19, }; enum { NET_PROTO_CONF_ALL=-2, NET_PROTO_CONF_DEFAULT=-3 }; enum { NET_IPV4_CONF_FORWARDING=1, NET_IPV4_CONF_MC_FORWARDING=2, NET_IPV4_CONF_PROXY_ARP=3, NET_IPV4_CONF_ACCEPT_REDIRECTS=4, NET_IPV4_CONF_SECURE_REDIRECTS=5, NET_IPV4_CONF_SEND_REDIRECTS=6, NET_IPV4_CONF_SHARED_MEDIA=7, NET_IPV4_CONF_RP_FILTER=8, NET_IPV4_CONF_ACCEPT_SOURCE_ROUTE=9, NET_IPV4_CONF_BOOTP_RELAY=10, NET_IPV4_CONF_LOG_MARTIANS=11, NET_IPV4_CONF_TAG=12, NET_IPV4_CONF_ARPFILTER=13, NET_IPV4_CONF_MEDIUM_ID=14, NET_IPV4_CONF_NOXFRM=15, NET_IPV4_CONF_NOPOLICY=16, NET_IPV4_CONF_FORCE_IGMP_VERSION=17, NET_IPV4_CONF_ARP_ANNOUNCE=18, NET_IPV4_CONF_ARP_IGNORE=19, NET_IPV4_CONF_PROMOTE_SECONDARIES=20, NET_IPV4_CONF_ARP_ACCEPT=21, NET_IPV4_CONF_ARP_NOTIFY=22, NET_IPV4_CONF_ACCEPT_LOCAL=23, NET_IPV4_CONF_SRC_VMARK=24, NET_IPV4_CONF_PROXY_ARP_PVLAN=25, # 500 "/usr/include/linux/sysctl.h" 3 4 NET_IPV4_CONF_ROUTE_LOCALNET=26, __NET_IPV4_CONF_MAX }; enum { NET_IPV4_NF_CONNTRACK_MAX=1, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT=10, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_IPV4_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_IPV4_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_IPV4_NF_CONNTRACK_BUCKETS=14, NET_IPV4_NF_CONNTRACK_LOG_INVALID=15, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_IPV4_NF_CONNTRACK_TCP_LOOSE=17, NET_IPV4_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_IPV4_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_IPV4_NF_CONNTRACK_COUNT=27, NET_IPV4_NF_CONNTRACK_CHECKSUM=28, }; enum { NET_IPV6_CONF=16, NET_IPV6_NEIGH=17, NET_IPV6_ROUTE=18, NET_IPV6_ICMP=19, NET_IPV6_BINDV6ONLY=20, NET_IPV6_IP6FRAG_HIGH_THRESH=21, NET_IPV6_IP6FRAG_LOW_THRESH=22, NET_IPV6_IP6FRAG_TIME=23, NET_IPV6_IP6FRAG_SECRET_INTERVAL=24, NET_IPV6_MLD_MAX_MSF=25, }; enum { NET_IPV6_ROUTE_FLUSH=1, NET_IPV6_ROUTE_GC_THRESH=2, NET_IPV6_ROUTE_MAX_SIZE=3, NET_IPV6_ROUTE_GC_MIN_INTERVAL=4, NET_IPV6_ROUTE_GC_TIMEOUT=5, NET_IPV6_ROUTE_GC_INTERVAL=6, NET_IPV6_ROUTE_GC_ELASTICITY=7, NET_IPV6_ROUTE_MTU_EXPIRES=8, NET_IPV6_ROUTE_MIN_ADVMSS=9, NET_IPV6_ROUTE_GC_MIN_INTERVAL_MS=10 }; enum { NET_IPV6_FORWARDING=1, NET_IPV6_HOP_LIMIT=2, NET_IPV6_MTU=3, NET_IPV6_ACCEPT_RA=4, NET_IPV6_ACCEPT_REDIRECTS=5, NET_IPV6_AUTOCONF=6, NET_IPV6_DAD_TRANSMITS=7, NET_IPV6_RTR_SOLICITS=8, NET_IPV6_RTR_SOLICIT_INTERVAL=9, NET_IPV6_RTR_SOLICIT_DELAY=10, NET_IPV6_USE_TEMPADDR=11, NET_IPV6_TEMP_VALID_LFT=12, NET_IPV6_TEMP_PREFERED_LFT=13, NET_IPV6_REGEN_MAX_RETRY=14, NET_IPV6_MAX_DESYNC_FACTOR=15, NET_IPV6_MAX_ADDRESSES=16, NET_IPV6_FORCE_MLD_VERSION=17, NET_IPV6_ACCEPT_RA_DEFRTR=18, NET_IPV6_ACCEPT_RA_PINFO=19, NET_IPV6_ACCEPT_RA_RTR_PREF=20, NET_IPV6_RTR_PROBE_INTERVAL=21, NET_IPV6_ACCEPT_RA_RT_INFO_MAX_PLEN=22, NET_IPV6_PROXY_NDP=23, NET_IPV6_ACCEPT_SOURCE_ROUTE=25, __NET_IPV6_MAX }; enum { NET_IPV6_ICMP_RATELIMIT=1 }; enum { NET_NEIGH_MCAST_SOLICIT=1, NET_NEIGH_UCAST_SOLICIT=2, NET_NEIGH_APP_SOLICIT=3, NET_NEIGH_RETRANS_TIME=4, NET_NEIGH_REACHABLE_TIME=5, NET_NEIGH_DELAY_PROBE_TIME=6, NET_NEIGH_GC_STALE_TIME=7, NET_NEIGH_UNRES_QLEN=8, NET_NEIGH_PROXY_QLEN=9, NET_NEIGH_ANYCAST_DELAY=10, NET_NEIGH_PROXY_DELAY=11, NET_NEIGH_LOCKTIME=12, NET_NEIGH_GC_INTERVAL=13, NET_NEIGH_GC_THRESH1=14, NET_NEIGH_GC_THRESH2=15, NET_NEIGH_GC_THRESH3=16, NET_NEIGH_RETRANS_TIME_MS=17, NET_NEIGH_REACHABLE_TIME_MS=18, __NET_NEIGH_MAX }; enum { NET_DCCP_DEFAULT=1, }; enum { NET_IPX_PPROP_BROADCASTING=1, NET_IPX_FORWARDING=2 }; enum { NET_LLC2=1, NET_LLC_STATION=2, }; enum { NET_LLC2_TIMEOUT=1, }; enum { NET_LLC_STATION_ACK_TIMEOUT=1, }; enum { NET_LLC2_ACK_TIMEOUT=1, NET_LLC2_P_TIMEOUT=2, NET_LLC2_REJ_TIMEOUT=3, NET_LLC2_BUSY_TIMEOUT=4, }; enum { NET_ATALK_AARP_EXPIRY_TIME=1, NET_ATALK_AARP_TICK_TIME=2, NET_ATALK_AARP_RETRANSMIT_LIMIT=3, NET_ATALK_AARP_RESOLVE_TIME=4 }; enum { NET_NETROM_DEFAULT_PATH_QUALITY=1, NET_NETROM_OBSOLESCENCE_COUNT_INITIALISER=2, NET_NETROM_NETWORK_TTL_INITIALISER=3, NET_NETROM_TRANSPORT_TIMEOUT=4, NET_NETROM_TRANSPORT_MAXIMUM_TRIES=5, NET_NETROM_TRANSPORT_ACKNOWLEDGE_DELAY=6, NET_NETROM_TRANSPORT_BUSY_DELAY=7, NET_NETROM_TRANSPORT_REQUESTED_WINDOW_SIZE=8, NET_NETROM_TRANSPORT_NO_ACTIVITY_TIMEOUT=9, NET_NETROM_ROUTING_CONTROL=10, NET_NETROM_LINK_FAILS_COUNT=11, NET_NETROM_RESET=12 }; enum { NET_AX25_IP_DEFAULT_MODE=1, NET_AX25_DEFAULT_MODE=2, NET_AX25_BACKOFF_TYPE=3, NET_AX25_CONNECT_MODE=4, NET_AX25_STANDARD_WINDOW=5, NET_AX25_EXTENDED_WINDOW=6, NET_AX25_T1_TIMEOUT=7, NET_AX25_T2_TIMEOUT=8, NET_AX25_T3_TIMEOUT=9, NET_AX25_IDLE_TIMEOUT=10, NET_AX25_N2=11, NET_AX25_PACLEN=12, NET_AX25_PROTOCOL=13, NET_AX25_DAMA_SLAVE_TIMEOUT=14 }; enum { NET_ROSE_RESTART_REQUEST_TIMEOUT=1, NET_ROSE_CALL_REQUEST_TIMEOUT=2, NET_ROSE_RESET_REQUEST_TIMEOUT=3, NET_ROSE_CLEAR_REQUEST_TIMEOUT=4, NET_ROSE_ACK_HOLD_BACK_TIMEOUT=5, NET_ROSE_ROUTING_CONTROL=6, NET_ROSE_LINK_FAIL_TIMEOUT=7, NET_ROSE_MAX_VCS=8, NET_ROSE_WINDOW_SIZE=9, NET_ROSE_NO_ACTIVITY_TIMEOUT=10 }; enum { NET_X25_RESTART_REQUEST_TIMEOUT=1, NET_X25_CALL_REQUEST_TIMEOUT=2, NET_X25_RESET_REQUEST_TIMEOUT=3, NET_X25_CLEAR_REQUEST_TIMEOUT=4, NET_X25_ACK_HOLD_BACK_TIMEOUT=5, NET_X25_FORWARD=6 }; enum { NET_TR_RIF_TIMEOUT=1 }; enum { NET_DECNET_NODE_TYPE = 1, NET_DECNET_NODE_ADDRESS = 2, NET_DECNET_NODE_NAME = 3, NET_DECNET_DEFAULT_DEVICE = 4, NET_DECNET_TIME_WAIT = 5, NET_DECNET_DN_COUNT = 6, NET_DECNET_DI_COUNT = 7, NET_DECNET_DR_COUNT = 8, NET_DECNET_DST_GC_INTERVAL = 9, NET_DECNET_CONF = 10, NET_DECNET_NO_FC_MAX_CWND = 11, NET_DECNET_MEM = 12, NET_DECNET_RMEM = 13, NET_DECNET_WMEM = 14, NET_DECNET_DEBUG_LEVEL = 255 }; enum { NET_DECNET_CONF_LOOPBACK = -2, NET_DECNET_CONF_DDCMP = -3, NET_DECNET_CONF_PPP = -4, NET_DECNET_CONF_X25 = -5, NET_DECNET_CONF_GRE = -6, NET_DECNET_CONF_ETHER = -7 }; enum { NET_DECNET_CONF_DEV_PRIORITY = 1, NET_DECNET_CONF_DEV_T1 = 2, NET_DECNET_CONF_DEV_T2 = 3, NET_DECNET_CONF_DEV_T3 = 4, NET_DECNET_CONF_DEV_FORWARDING = 5, NET_DECNET_CONF_DEV_BLKSIZE = 6, NET_DECNET_CONF_DEV_STATE = 7 }; enum { NET_SCTP_RTO_INITIAL = 1, NET_SCTP_RTO_MIN = 2, NET_SCTP_RTO_MAX = 3, NET_SCTP_RTO_ALPHA = 4, NET_SCTP_RTO_BETA = 5, NET_SCTP_VALID_COOKIE_LIFE = 6, NET_SCTP_ASSOCIATION_MAX_RETRANS = 7, NET_SCTP_PATH_MAX_RETRANS = 8, NET_SCTP_MAX_INIT_RETRANSMITS = 9, NET_SCTP_HB_INTERVAL = 10, NET_SCTP_PRESERVE_ENABLE = 11, NET_SCTP_MAX_BURST = 12, NET_SCTP_ADDIP_ENABLE = 13, NET_SCTP_PRSCTP_ENABLE = 14, NET_SCTP_SNDBUF_POLICY = 15, NET_SCTP_SACK_TIMEOUT = 16, NET_SCTP_RCVBUF_POLICY = 17, }; enum { NET_BRIDGE_NF_CALL_ARPTABLES = 1, NET_BRIDGE_NF_CALL_IPTABLES = 2, NET_BRIDGE_NF_CALL_IP6TABLES = 3, NET_BRIDGE_NF_FILTER_VLAN_TAGGED = 4, NET_BRIDGE_NF_FILTER_PPPOE_TAGGED = 5, }; enum { NET_IRDA_DISCOVERY=1, NET_IRDA_DEVNAME=2, NET_IRDA_DEBUG=3, NET_IRDA_FAST_POLL=4, NET_IRDA_DISCOVERY_SLOTS=5, NET_IRDA_DISCOVERY_TIMEOUT=6, NET_IRDA_SLOT_TIMEOUT=7, NET_IRDA_MAX_BAUD_RATE=8, NET_IRDA_MIN_TX_TURN_TIME=9, NET_IRDA_MAX_TX_DATA_SIZE=10, NET_IRDA_MAX_TX_WINDOW=11, NET_IRDA_MAX_NOREPLY_TIME=12, NET_IRDA_WARN_NOREPLY_TIME=13, NET_IRDA_LAP_KEEPALIVE_TIME=14, }; enum { FS_NRINODE=1, FS_STATINODE=2, FS_MAXINODE=3, FS_NRDQUOT=4, FS_MAXDQUOT=5, FS_NRFILE=6, FS_MAXFILE=7, FS_DENTRY=8, FS_NRSUPER=9, FS_MAXSUPER=10, FS_OVERFLOWUID=11, FS_OVERFLOWGID=12, FS_LEASES=13, FS_DIR_NOTIFY=14, FS_LEASE_TIME=15, FS_DQSTATS=16, FS_XFS=17, FS_AIO_NR=18, FS_AIO_MAX_NR=19, FS_INOTIFY=20, FS_OCFS2=988, }; enum { FS_DQ_LOOKUPS = 1, FS_DQ_DROPS = 2, FS_DQ_READS = 3, FS_DQ_WRITES = 4, FS_DQ_CACHE_HITS = 5, FS_DQ_ALLOCATED = 6, FS_DQ_FREE = 7, FS_DQ_SYNCS = 8, FS_DQ_WARNINGS = 9, }; enum { DEV_CDROM=1, DEV_HWMON=2, DEV_PARPORT=3, DEV_RAID=4, DEV_MAC_HID=5, DEV_SCSI=6, DEV_IPMI=7, }; enum { DEV_CDROM_INFO=1, DEV_CDROM_AUTOCLOSE=2, DEV_CDROM_AUTOEJECT=3, DEV_CDROM_DEBUG=4, DEV_CDROM_LOCK=5, DEV_CDROM_CHECK_MEDIA=6 }; enum { DEV_PARPORT_DEFAULT=-3 }; enum { DEV_RAID_SPEED_LIMIT_MIN=1, DEV_RAID_SPEED_LIMIT_MAX=2 }; enum { DEV_PARPORT_DEFAULT_TIMESLICE=1, DEV_PARPORT_DEFAULT_SPINTIME=2 }; enum { DEV_PARPORT_SPINTIME=1, DEV_PARPORT_BASE_ADDR=2, DEV_PARPORT_IRQ=3, DEV_PARPORT_DMA=4, DEV_PARPORT_MODES=5, DEV_PARPORT_DEVICES=6, DEV_PARPORT_AUTOPROBE=16 }; enum { DEV_PARPORT_DEVICES_ACTIVE=-3, }; enum { DEV_PARPORT_DEVICE_TIMESLICE=1, }; enum { DEV_MAC_HID_KEYBOARD_SENDS_LINUX_KEYCODES=1, DEV_MAC_HID_KEYBOARD_LOCK_KEYCODES=2, DEV_MAC_HID_MOUSE_BUTTON_EMULATION=3, DEV_MAC_HID_MOUSE_BUTTON2_KEYCODE=4, DEV_MAC_HID_MOUSE_BUTTON3_KEYCODE=5, DEV_MAC_HID_ADB_MOUSE_SENDS_KEYCODES=6 }; enum { DEV_SCSI_LOGGING_LEVEL=1, }; enum { DEV_IPMI_POWEROFF_POWERCYCLE=1, }; enum { ABI_DEFHANDLER_COFF=1, ABI_DEFHANDLER_ELF=2, ABI_DEFHANDLER_LCALL7=3, ABI_DEFHANDLER_LIBCSO=4, ABI_TRACE=5, ABI_FAKE_UTSNAME=6, }; # 45 "/usr/include/sys/sysctl.h" 2 3 4 # 64 "/usr/include/sys/sysctl.h" 3 4 extern int sysctl (int *__name, int __nlen, void *__oldval, size_t *__oldlenp, void *__newval, size_t __newlen) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.packages.pthread/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:684) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:684) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.papi(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.papi(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/lgrind...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/lgrind...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/lgrind...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/lgrind...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/lgrind...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/lgrind...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/lgrind...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/lgrind...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/lgrind...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/lgrind...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/lgrind...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/lgrind...not found Checking for program /usr/lib64/qt-3.3/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /opt/ibutils/bin/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/lgrind...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/lgrind...not found Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/bin/win32fe/lgrind...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.cgns(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:626) TESTING: configureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:626) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional cgns Checking for library in User specified root directory CGNS: ['/gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.a'] Contents: ['.git', 'CMakeLists.txt', 'Fortran_examples', 'Fortran_test', 'README.md', 'README.txt', 'UserGuideCode', 'changelog', 'cmake_uninstall.cmake.in', 'install.lyx', 'install.txt', 'license.txt', 'release_docs', 'src', 'build', 'lib', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cg_close] in library ['/gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cg_close(); static void _check_cg_close() { cg_close(); } int main() { _check_cg_close();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_INT32_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5P_CLS_FILE_CREATE_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Pcreate' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Tcopy' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_UINT32_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Sget_simple_extent_dims' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Eset_auto2' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Sget_simple_extent_ndims' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Aget_type' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Fcreate' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Sclose' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_SCHAR_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Aopen_name' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Gunlink' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Lget_val' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Tget_native_type' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Acreate2' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Aclose' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Pset_deflate' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_C_S1_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Tset_precision' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Dopen2' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Dget_type' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_FLOAT_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Lunpack_elink_val' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Dwrite' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Lcreate_external' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Screate_simple' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Aread' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5check_version' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Iget_name' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Lis_registered' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Fget_obj_ids' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5P_CLS_GROUP_CREATE_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Gcreate2' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Giterate' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Tget_size' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Lexists' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_UCHAR_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Screate' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_IEEE_F32BE_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Literate' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Gopen2' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Dset_extent' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_IEEE_F64BE_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Dget_space' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Dclose' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5P_CLS_FILE_ACCESS_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_UINT64_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Pset_nlinks' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Pclose' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Fflush' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Pset_link_creation_order' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5P_CLS_LINK_ACCESS_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_IEEE_F64LE_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Fis_hdf5' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_INT64_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_IEEE_F32LE_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Gget_objinfo' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Sselect_hyperslab' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_INT_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Gclose' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Ewalk2' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Awrite' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Gmove' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Sget_simple_extent_npoints' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5open' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Dread' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5garbage_collect' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Pset_libver_bounds' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Tget_precision' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Tset_size' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Aiterate2' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Fget_obj_count' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5P_CLS_DATASET_CREATE_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5get_libversion' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Tclose' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Fopen' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Fclose' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Glink' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5T_NATIVE_DOUBLE_g' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Dcreate2' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Tequal' /gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.so: undefined reference to `H5Sget_select_npoints' collect2: error: ld returned 1 exit status Popping language C Checking for library in User specified root directory CGNS: ['/gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.a', 'libhdf5.a'] Contents: ['.git', 'CMakeLists.txt', 'Fortran_examples', 'Fortran_test', 'README.md', 'README.txt', 'UserGuideCode', 'changelog', 'cmake_uninstall.cmake.in', 'install.lyx', 'install.txt', 'license.txt', 'release_docs', 'src', 'build', 'lib', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cg_close] in library ['/gpfs/rrcfd/rruk-students/apps/CGNS/lib/libcgns.a', 'libhdf5.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cg_close(); static void _check_cg_close() { cg_close(); } int main() { _check_cg_close();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5 -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBCGNS" to "1" Defined "HAVE_LIBHDF5" to "1" Popping language C Checking for headers User specified root directory CGNS: ['/gpfs/rrcfd/rruk-students/apps/CGNS/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cgnslib.h'] in ['/gpfs/rrcfd/rruk-students/apps/CGNS/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/rrcfd/rruk-students/apps/CGNS/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.headers -I/gpfs/rrcfd/rruk-students/apps/CGNS/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnslib.h" 1 # 44 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnslib.h" # 1 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnstypes.h" 1 # 69 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnstypes.h" typedef long cgsize_t; typedef int cgerr_t; typedef int cgint_t; typedef double cgid_t; typedef int cgint_f; typedef long cglong_t; typedef unsigned long cgulong_t; # 45 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnslib.h" 2 # 150 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnslib.h" typedef enum { MassUnitsNull =0, MassUnitsUserDefined=1, Kilogram =2, Gram =3, Slug =4, PoundMass =5 } MassUnits_t; typedef enum { LengthUnitsNull =0, LengthUnitsUserDefined=1, Meter =2, Centimeter =3, Millimeter =4, Foot =5, Inch =6 } LengthUnits_t; typedef enum { TimeUnitsNull =0, TimeUnitsUserDefined=1, Second =2 } TimeUnits_t; typedef enum { TemperatureUnitsNull =0, TemperatureUnitsUserDefined=1, Kelvin =2, Celsius =3, Rankine =4, Fahrenheit =5 } TemperatureUnits_t; typedef enum { AngleUnitsNull =0, AngleUnitsUserDefined=1, Degree =2, Radian =3 } AngleUnits_t; typedef enum { ElectricCurrentUnitsNull =0, ElectricCurrentUnitsUserDefined=1, Ampere =2, Abampere =3, Statampere =4, Edison =5, auCurrent =6 } ElectricCurrentUnits_t; typedef enum { SubstanceAmountUnitsNull =0, SubstanceAmountUnitsUserDefined=1, Mole =2, Entities =3, StandardCubicFoot =4, StandardCubicMeter =5 } SubstanceAmountUnits_t; typedef enum { LuminousIntensityUnitsNull =0, LuminousIntensityUnitsUserDefined=1, Candela =2, Candle =3, Carcel =4, Hefner =5, Violle =6 } LuminousIntensityUnits_t; # 229 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnslib.h" extern const char * MassUnitsName[6]; extern const char * LengthUnitsName[7]; extern const char * TimeUnitsName[3]; extern const char * TemperatureUnitsName[6]; extern const char * AngleUnitsName[4]; extern const char * ElectricCurrentUnitsName[7]; extern const char * SubstanceAmountUnitsName[6]; extern const char * LuminousIntensityUnitsName[7]; typedef enum { DataClassNull =0, DataClassUserDefined =1, Dimensional =2, NormalizedByDimensional =3, NormalizedByUnknownDimensional =4, NondimensionalParameter =5, DimensionlessConstant =6 } DataClass_t; extern const char * DataClassName[7]; typedef enum { GridLocationNull =0, GridLocationUserDefined =1, Vertex =2, CellCenter =3, FaceCenter =4, IFaceCenter =5, JFaceCenter =6, KFaceCenter =7, EdgeCenter =8 } GridLocation_t; extern const char * GridLocationName[9]; typedef enum { BCDataTypeNull =0, BCDataTypeUserDefined =1, Dirichlet =2, Neumann =3 } BCDataType_t; extern const char * BCDataTypeName[4]; typedef enum { GridConnectivityTypeNull =0, GridConnectivityTypeUserDefined =1, Overset =2, Abutting =3, Abutting1to1 =4 } GridConnectivityType_t; extern const char * GridConnectivityTypeName[5]; typedef enum { PointSetTypeNull =0, PointSetTypeUserDefined =1, PointList =2, PointListDonor =3, PointRange =4, PointRangeDonor =5, ElementRange =6, ElementList =7, CellListDonor =8 } PointSetType_t; extern const char * PointSetTypeName[9]; typedef enum { GoverningEquationsNull =0, GoverningEquationsUserDefined =1, FullPotential =2, Euler =3, NSLaminar =4, NSTurbulent =5, NSLaminarIncompressible =6, NSTurbulentIncompressible =7 } GoverningEquationsType_t; # 372 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnslib.h" typedef enum { ModelTypeNull =0, ModelTypeUserDefined =1, Ideal =2, VanderWaals =3, Constant =4, PowerLaw =5, SutherlandLaw =6, ConstantPrandtl =7, EddyViscosity =8, ReynoldsStress =9, ReynoldsStressAlgebraic =10, Algebraic_BaldwinLomax =11, Algebraic_CebeciSmith =12, HalfEquation_JohnsonKing =13, OneEquation_BaldwinBarth =14, OneEquation_SpalartAllmaras =15, TwoEquation_JonesLaunder =16, TwoEquation_MenterSST =17, TwoEquation_Wilcox =18, CaloricallyPerfect =19, ThermallyPerfect =20, ConstantDensity =21, RedlichKwong =22, Frozen =23, ThermalEquilib =24, ThermalNonequilib =25, ChemicalEquilibCurveFit =26, ChemicalEquilibMinimization =27, ChemicalNonequilib =28, EMElectricField =29, EMMagneticField =30, EMConductivity =31, Voltage =32, Interpolated =33, Equilibrium_LinRessler =34, Chemistry_LinRessler =35 } ModelType_t; extern const char * GoverningEquationsTypeName[8]; extern const char * ModelTypeName[36]; typedef enum { BCTypeNull =0, BCTypeUserDefined =1, BCAxisymmetricWedge =2, BCDegenerateLine =3, BCDegeneratePoint =4, BCDirichlet =5, BCExtrapolate =6, BCFarfield =7, BCGeneral =8, BCInflow =9, BCInflowSubsonic =10, BCInflowSupersonic =11, BCNeumann =12, BCOutflow =13, BCOutflowSubsonic =14, BCOutflowSupersonic =15, BCSymmetryPlane =16, BCSymmetryPolar =17, BCTunnelInflow =18, BCTunnelOutflow =19, BCWall =20, BCWallInviscid =21, BCWallViscous =22, BCWallViscousHeatFlux =23, BCWallViscousIsothermal =24, FamilySpecified =25 } BCType_t; extern const char * BCTypeName[26]; typedef enum { DataTypeNull =0, DataTypeUserDefined =1, Integer =2, RealSingle =3, RealDouble =4, Character =5, LongInteger =6 } DataType_t; extern const char * DataTypeName[7]; typedef enum { ElementTypeNull =0, ElementTypeUserDefined =1, NODE =2, BAR_2 =3, BAR_3 =4, TRI_3 =5, TRI_6 =6, QUAD_4 =7, QUAD_8 =8, QUAD_9 =9, TETRA_4 =10, TETRA_10 =11, PYRA_5 =12, PYRA_14 =13, PENTA_6 =14, PENTA_15 =15, PENTA_18 =16, HEXA_8 =17, HEXA_20 =18, HEXA_27 =19, MIXED =20, PYRA_13 =21, NGON_n =22, NFACE_n =23, BAR_4 =24, TRI_9 =25, TRI_10 =26, QUAD_12 =27, QUAD_16 =28, TETRA_16 =29, TETRA_20 =30, PYRA_21 =31, PYRA_29 =32, PYRA_30 =33, PENTA_24 =34, PENTA_38 =35, PENTA_40 =36, HEXA_32 =37, HEXA_56 =38, HEXA_64 =39, BAR_5=40, TRI_12=41, TRI_15=42, QUAD_P4_16=43, QUAD_25=44, TETRA_22=45, TETRA_34=46, TETRA_35=47, PYRA_P4_29=48, PYRA_50=49, PYRA_55=50, PENTA_33=51, PENTA_66=52, PENTA_75=53, HEXA_44=54, HEXA_98=55, HEXA_125=56 } ElementType_t; extern const char * ElementTypeName[57]; # 660 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnslib.h" typedef enum { ZoneTypeNull =0, ZoneTypeUserDefined =1, Structured =2, Unstructured =3 } ZoneType_t; extern const char * ZoneTypeName[4]; typedef enum { RigidGridMotionTypeNull =0, RigidGridMotionTypeUserDefined =1, ConstantRate =2, VariableRate =3 } RigidGridMotionType_t; extern const char * RigidGridMotionTypeName[4]; typedef enum { ArbitraryGridMotionTypeNull =0, ArbitraryGridMotionTypeUserDefined =1, NonDeformingGrid =2, DeformingGrid =3 } ArbitraryGridMotionType_t; extern const char * ArbitraryGridMotionTypeName[4]; typedef enum { SimulationTypeNull =0, SimulationTypeUserDefined =1, TimeAccurate =2, NonTimeAccurate =3 } SimulationType_t; extern const char * SimulationTypeName[4]; typedef enum { WallFunctionTypeNull =0, WallFunctionTypeUserDefined =1, Generic =2 } WallFunctionType_t; typedef enum { AreaTypeNull =0, AreaTypeUserDefined =1, BleedArea =2, CaptureArea =3 } AreaType_t; extern const char * WallFunctionTypeName[3]; extern const char * AreaTypeName[4]; typedef enum { AverageInterfaceTypeNull =0, AverageInterfaceTypeUserDefined =1, AverageAll =2, AverageCircumferential =3, AverageRadial =4, AverageI =5, AverageJ =6, AverageK =7 } AverageInterfaceType_t; extern const char * AverageInterfaceTypeName[8]; int cg_is_cgns(const char *filename, int *file_type); int cg_open(const char * filename, int mode, int *fn); int cg_version(int fn, float *FileVersion); int cg_precision(int fn, int *precision); int cg_close(int fn); int cg_save_as(int fn, const char *filename, int file_type, int follow_links); int cg_set_file_type(int file_type); int cg_get_file_type(int fn, int *file_type); int cg_root_id(int fn, double *rootid); int cg_get_cgio(int fn, int *cgio_num); int cg_configure(int what, void *value); int cg_error_handler(void (*)(int, char *)); int cg_set_compress(int compress); int cg_get_compress(int *compress); int cg_set_path(const char *path); int cg_add_path(const char *path); const char *cg_get_name(int nnames, const char **names, int type); const char *cg_MassUnitsName(MassUnits_t type); const char *cg_LengthUnitsName(LengthUnits_t type); const char *cg_TimeUnitsName(TimeUnits_t type); const char *cg_TemperatureUnitsName(TemperatureUnits_t type); const char *cg_AngleUnitsName(AngleUnits_t type); const char *cg_ElectricCurrentUnitsName(ElectricCurrentUnits_t type); const char *cg_SubstanceAmountUnitsName(SubstanceAmountUnits_t type); const char *cg_LuminousIntensityUnitsName(LuminousIntensityUnits_t type); const char *cg_DataClassName(DataClass_t type); const char *cg_GridLocationName(GridLocation_t type); const char *cg_BCDataTypeName(BCDataType_t type); const char *cg_GridConnectivityTypeName(GridConnectivityType_t type); const char *cg_PointSetTypeName(PointSetType_t type); const char *cg_GoverningEquationsTypeName(GoverningEquationsType_t type); const char *cg_ModelTypeName(ModelType_t type); const char *cg_BCTypeName(BCType_t type); const char *cg_DataTypeName(DataType_t type); const char *cg_ElementTypeName(ElementType_t type); const char *cg_ZoneTypeName(ZoneType_t type); const char *cg_RigidGridMotionTypeName(RigidGridMotionType_t type); const char *cg_ArbitraryGridMotionTypeName(ArbitraryGridMotionType_t type); const char *cg_SimulationTypeName(SimulationType_t type); const char *cg_WallFunctionTypeName(WallFunctionType_t type); const char *cg_AreaTypeName(AreaType_t type); const char *cg_AverageInterfaceTypeName(AverageInterfaceType_t type); int cg_nbases(int fn, int *nbases); int cg_base_read(int file_number, int B, char *basename, int *cell_dim, int *phys_dim); int cg_base_id(int fn, int B, double *base_id); int cg_base_write(int file_number, const char * basename, int cell_dim, int phys_dim, int *B); int cg_cell_dim(int fn, int B, int *cell_dim); int cg_nzones(int fn, int B, int *nzones); int cg_zone_read(int fn, int B, int Z, char *zonename, cgsize_t *size); int cg_zone_type(int file_number, int B, int Z, ZoneType_t *type); int cg_zone_id(int fn, int B, int Z, double *zone_id); int cg_zone_write(int fn, int B, const char * zonename, const cgsize_t * size, ZoneType_t type, int *Z); int cg_index_dim(int fn, int B, int Z, int *index_dim); int cg_nfamilies(int file_number, int B, int *nfamilies); int cg_family_read(int file_number, int B, int F, char *family_name, int *nboco, int *ngeos); int cg_family_write(int file_number, int B, const char * family_name, int *F); int cg_nfamily_names(int file_number, int B, int F, int *nnames); int cg_family_name_read(int file_number, int B, int F, int N, char *name, char *family); int cg_family_name_write(int file_number, int B, int F, const char *name, const char *family); int cg_famname_read(char *family_name); int cg_famname_write(const char * family_name); int cg_nmultifam(int *nfams); int cg_multifam_read(int N, char *name, char *family); int cg_multifam_write(const char *name, const char *family); int cg_fambc_read(int file_number, int B, int F, int BC, char *fambc_name, BCType_t *bocotype); int cg_fambc_write(int file_number, int B, int F, const char * fambc_name, BCType_t bocotype, int *BC); int cg_geo_read(int file_number, int B, int F, int G, char *geo_name, char **geo_file, char *CAD_name, int *npart); int cg_geo_write(int file_number, int B, int F, const char * geo_name, const char * filename, const char * CADname, int *G); int cg_part_read(int file_number, int B, int F, int G, int P, char *part_name); int cg_part_write(int file_number, int B, int F, int G, const char * part_name, int *P); int cg_ngrids(int file_number, int B, int Z, int *ngrids); int cg_grid_read(int file_number, int B, int Z, int G, char *gridname); int cg_grid_write(int file_number, int B, int Z, const char * zcoorname, int *G); int cg_ncoords(int fn, int B, int Z, int *ncoords); int cg_coord_info(int fn, int B, int Z, int C, DataType_t *type, char *coordname); int cg_coord_read(int fn, int B, int Z, const char * coordname, DataType_t type, const cgsize_t * rmin, const cgsize_t * rmax, void *coord); int cg_coord_id(int fn, int B, int Z, int C, double *coord_id); int cg_coord_write(int fn, int B, int Z, DataType_t type, const char * coordname, const void * coord_ptr, int *C); int cg_coord_partial_write(int fn, int B, int Z, DataType_t type, const char * coordname, const cgsize_t *rmin, const cgsize_t *rmax, const void * coord_ptr, int *C); int cg_nsections(int file_number, int B, int Z, int *nsections); int cg_section_read(int file_number, int B, int Z, int S, char *SectionName, ElementType_t *type, cgsize_t *start, cgsize_t *end, int *nbndry, int *parent_flag); int cg_elements_read(int file_number, int B, int Z, int S, cgsize_t *elements, cgsize_t *parent_data); int cg_section_write(int file_number, int B, int Z, const char * SectionName, ElementType_t type, cgsize_t start, cgsize_t end, int nbndry, const cgsize_t * elements, int *S); int cg_parent_data_write(int file_number, int B, int Z, int S, const cgsize_t * parent_data); int cg_npe( ElementType_t type, int *npe); int cg_ElementDataSize(int file_number, int B, int Z, int S, cgsize_t *ElementDataSize); int cg_section_partial_write(int file_number, int B, int Z, const char * SectionName, ElementType_t type, cgsize_t start, cgsize_t end, int nbndry, int *S); int cg_elements_partial_write(int fn, int B, int Z, int S, cgsize_t start, cgsize_t end, const cgsize_t *elements); int cg_parent_data_partial_write(int fn, int B, int Z, int S, cgsize_t start, cgsize_t end, const cgsize_t *ParentData); int cg_elements_partial_read(int file_number, int B, int Z, int S, cgsize_t start, cgsize_t end, cgsize_t *elements, cgsize_t *parent_data); int cg_ElementPartialSize(int file_number, int B, int Z, int S, cgsize_t start, cgsize_t end, cgsize_t *ElementDataSize); int cg_nsols(int fn, int B, int Z, int *nsols); int cg_sol_info(int fn, int B, int Z, int S, char *solname, GridLocation_t *location); int cg_sol_id(int fn, int B, int Z,int S, double *sol_id); int cg_sol_write(int fn, int B, int Z, const char * solname, GridLocation_t location, int *S); int cg_sol_size(int fn, int B, int Z, int S, int *data_dim, cgsize_t *dim_vals); int cg_sol_ptset_info(int fn, int B, int Z, int S, PointSetType_t *ptset_type, cgsize_t *npnts); int cg_sol_ptset_read(int fn, int B, int Z, int S, cgsize_t *pnts); int cg_sol_ptset_write(int fn, int B, int Z, const char *solname, GridLocation_t location, PointSetType_t ptset_type, cgsize_t npnts, const cgsize_t *pnts, int *S); int cg_nfields(int fn, int B, int Z, int S, int *nfields); int cg_field_info(int fn,int B,int Z,int S, int F, DataType_t *type, char *fieldname); int cg_field_read(int fn, int B, int Z, int S, const char *fieldname, DataType_t type, const cgsize_t *rmin, const cgsize_t *rmax, void *field_ptr); int cg_field_id(int fn, int B, int Z,int S, int F, double *field_id); int cg_field_write(int fn,int B,int Z,int S, DataType_t type, const char * fieldname, const void * field_ptr, int *F); int cg_field_partial_write(int fn, int B, int Z, int S, DataType_t type, const char * fieldname, const cgsize_t *rmin, const cgsize_t *rmax, const void * field_ptr, int *F); int cg_nsubregs(int fn, int B, int Z, int *nsubreg); int cg_subreg_info(int fn, int B, int Z, int S, char *regname, int *dimension, GridLocation_t *location, PointSetType_t *ptset_type, cgsize_t *npnts, int *bcname_len, int *gcname_len); int cg_subreg_ptset_read(int fn, int B, int Z, int S, cgsize_t *pnts); int cg_subreg_bcname_read(int fn, int B, int Z, int S, char *bcname); int cg_subreg_gcname_read(int fn, int B, int Z, int S, char *gcname); int cg_subreg_ptset_write(int fn, int B, int Z, const char *regname, int dimension, GridLocation_t location, PointSetType_t ptset_type, cgsize_t npnts, const cgsize_t *pnts, int *S); int cg_subreg_bcname_write(int fn, int B, int Z, const char *regname, int dimension, const char *bcname, int *S); int cg_subreg_gcname_write(int fn, int B, int Z, const char *regname, int dimension, const char *gcname, int *S); int cg_nzconns(int fn, int B, int Z, int *nzconns); int cg_zconn_read(int fn, int B, int Z, int C, char *name); int cg_zconn_write(int fn, int B, int Z, const char *name, int *C); int cg_zconn_get(int fn, int B, int Z, int *C); int cg_zconn_set(int fn, int B, int Z, int C); int cg_nholes(int fn, int B, int Z, int *nholes); int cg_hole_info(int fn, int B, int Z, int Ii, char *holename, GridLocation_t *location, PointSetType_t *ptset_type, int *nptsets, cgsize_t *npnts); int cg_hole_read(int fn, int B, int Z, int Ii, cgsize_t *pnts); int cg_hole_id(int fn, int B, int Z, int Ii, double *hole_id); int cg_hole_write(int fn, int B, int Z, const char * holename, GridLocation_t location, PointSetType_t ptset_type, int nptsets, cgsize_t npnts, const cgsize_t * pnts, int *Ii); int cg_nconns(int fn, int B, int Z, int *nconns); int cg_conn_info(int file_number, int B, int Z, int Ii, char *connectname, GridLocation_t *location, GridConnectivityType_t *type, PointSetType_t *ptset_type, cgsize_t *npnts, char *donorname, ZoneType_t *donor_zonetype, PointSetType_t *donor_ptset_type, DataType_t *donor_datatype, cgsize_t *ndata_donor); int cg_conn_read(int file_number, int B, int Z, int Ii, cgsize_t *pnts, DataType_t donor_datatype, cgsize_t *donor_data); int cg_conn_id(int fn, int B, int Z, int Ii, double *conn_id); int cg_conn_write(int file_number, int B, int Z, const char * connectname, GridLocation_t location, GridConnectivityType_t type, PointSetType_t ptset_type, cgsize_t npnts, const cgsize_t * pnts, const char * donorname, ZoneType_t donor_zonetype, PointSetType_t donor_ptset_type, DataType_t donor_datatype, cgsize_t ndata_donor, const cgsize_t *donor_data, int *Ii); int cg_conn_write_short(int file_number, int B, int Z, const char * connectname, GridLocation_t location, GridConnectivityType_t type, PointSetType_t ptset_type, cgsize_t npnts, const cgsize_t * pnts, const char * donorname, int *Ii); int cg_conn_read_short(int file_number, int B, int Z, int Ii, cgsize_t *pnts); int cg_n1to1(int fn, int B, int Z, int *n1to1); int cg_1to1_read(int fn, int B, int Z, int Ii, char *connectname, char *donorname, cgsize_t *range, cgsize_t *donor_range, int *transform); int cg_1to1_id(int fn, int B, int Z, int Ii, double *one21_id); int cg_1to1_write(int fn, int B, int Z, const char * connectname, const char * donorname, const cgsize_t * range, const cgsize_t * donor_range, const int * transform, int *Ii); int cg_n1to1_global(int fn, int B, int *n1to1_global); int cg_1to1_read_global(int fn, int B, char **connectname, char **zonename, char **donorname, cgsize_t **range, cgsize_t **donor_range, int **transform); int cg_nbocos(int fn, int B, int Z, int *nbocos); int cg_boco_info(int fn, int B, int Z, int BC, char *boconame, BCType_t *bocotype, PointSetType_t *ptset_type, cgsize_t *npnts, int *NormalIndex, cgsize_t *NormalListSize, DataType_t *NormalDataType, int *ndataset); int cg_boco_read(int fn, int B, int Z, int BC, cgsize_t *pnts, void *NormalList); int cg_boco_id(int fn, int B, int Z, int BC, double *boco_id); int cg_boco_write(int file_number, int B, int Z, const char * boconame, BCType_t bocotype, PointSetType_t ptset_type, cgsize_t npnts, const cgsize_t * pnts, int *BC); int cg_boco_normal_write(int file_number, int B, int Z, int BC, const int * NormalIndex, int NormalListFlag, DataType_t NormalDataType, const void * NormalList); int cg_boco_gridlocation_read(int file_number, int B, int Z, int BC, GridLocation_t *location); int cg_boco_gridlocation_write(int file_number, int B, int Z, int BC, GridLocation_t location); int cg_dataset_read(int fn, int B, int Z, int BC, int DS, char *name, BCType_t *BCType, int *DirichletFlag, int *NeumannFlag); int cg_dataset_write(int file_number, int B, int Z, int BC, const char * name, BCType_t BCType, int *Dset); int cg_bcdataset_write(const char *name, BCType_t BCType, BCDataType_t BCDataType); int cg_bcdataset_info(int *n_dataset); int cg_bcdataset_read(int index, char *name, BCType_t *BCType, int *DirichletFlag, int *NeumannFlag); int cg_bcdata_write(int file_number, int B, int Z, int BC, int Dset, BCDataType_t BCDataType); int cg_ndiscrete(int file_number, int B, int Z, int *ndiscrete); int cg_discrete_read(int file_number, int B, int Z, int D, char *discrete_name); int cg_discrete_write(int file_number, int B, int Z, const char * discrete_name, int *D); int cg_discrete_size(int fn, int B, int Z, int D, int *data_dim, cgsize_t *dim_vals); int cg_discrete_ptset_info(int fn, int B, int Z, int D, PointSetType_t *ptset_type, cgsize_t *npnts); int cg_discrete_ptset_read(int fn, int B, int Z, int D, cgsize_t *pnts); int cg_discrete_ptset_write(int fn, int B, int Z, const char *discrete_name, GridLocation_t location, PointSetType_t ptset_type, cgsize_t npnts, const cgsize_t *pnts, int *D); int cg_n_rigid_motions(int file_number, int B, int Z, int *n_rigid_motions); int cg_rigid_motion_read(int file_number, int B, int Z, int R, char *name, RigidGridMotionType_t *type); int cg_rigid_motion_write(int file_number, int B, int Z, const char * name, RigidGridMotionType_t type, int *R); int cg_n_arbitrary_motions(int file_number, int B, int Z, int *n_arbitrary_motions); int cg_arbitrary_motion_read(int file_number, int B, int Z, int A, char *name, ArbitraryGridMotionType_t *type); int cg_arbitrary_motion_write(int file_number, int B, int Z, const char * amotionname, ArbitraryGridMotionType_t type, int *A); int cg_simulation_type_read(int file_number, int B, SimulationType_t *type); int cg_simulation_type_write(int file_number, int B, SimulationType_t type); int cg_biter_read(int file_number, int B, char *bitername, int *nsteps); int cg_biter_write(int file_number, int B, const char * bitername, int nsteps); int cg_ziter_read(int file_number, int B, int Z, char *zitername); int cg_ziter_write(int file_number, int B, int Z, const char * zitername); int cg_gravity_read(int file_number, int B, float *gravity_vector); int cg_gravity_write(int file_number, int B, float const *gravity_vector); int cg_axisym_read(int file_number, int B, float *ref_point, float *axis); int cg_axisym_write(int file_number, int B, float const *ref_point, float const *axis); int cg_rotating_read(float *rot_rate, float *rot_center); int cg_rotating_write(float const *rot_rate, float const *rot_center); int cg_bc_wallfunction_read(int file_number, int B, int Z, int BC, WallFunctionType_t *WallFunctionType); int cg_bc_wallfunction_write(int file_number, int B, int Z, int BC, WallFunctionType_t WallFunctionType); int cg_bc_area_read(int file_number, int B, int Z, int BC, AreaType_t *AreaType, float *SurfaceArea, char *RegionName); int cg_bc_area_write(int file_number, int B, int Z, int BC, AreaType_t AreaType, float SurfaceArea, const char *RegionName); int cg_conn_periodic_read(int file_number, int B, int Z, int Ii, float *RotationCenter, float *RotationAngle, float *Translation); int cg_conn_periodic_write(int file_number, int B, int Z, int Ii, float const *RotationCenter, float const *RotationAngle, float const *Translation); int cg_1to1_periodic_write(int file_number, int B, int Z, int Ii, float const *RotationCenter, float const *RotationAngle, float const *Translation); int cg_1to1_periodic_read(int file_number, int B, int Z, int Ii, float *RotationCenter, float *RotationAngle, float *Translation); int cg_conn_average_read(int file_number, int B, int Z, int Ii, AverageInterfaceType_t *AverageInterfaceType); int cg_conn_average_write(int file_number, int B, int Z, int Ii, AverageInterfaceType_t AverageInterfaceType); int cg_1to1_average_write(int file_number, int B, int Z, int Ii, AverageInterfaceType_t AverageInterfaceType); int cg_1to1_average_read(int file_number, int B, int Z, int Ii, AverageInterfaceType_t *AverageInterfaceType); int cg_goto(int file_number, int B, ...); int cg_goto_f08(int file_number, int B, ...); int cg_gorel(int file_number, ...); int cg_gorel_f08(int file_number, ...); int cg_gopath(int file_number, const char *path); int cg_golist(int file_number, int B, int depth, char **label, int *num); int cg_where(int *file_number, int *B, int *depth, char **label, int *num); int cg_convergence_read(int *iterations, char **NormDefinitions); int cg_convergence_write(int iterations, const char * NormDefinitions); int cg_state_read(char **StateDescription); int cg_state_write(const char * StateDescription); int cg_equationset_read(int *EquationDimension, int *GoverningEquationsFlag, int *GasModelFlag, int *ViscosityModelFlag, int *ThermalConductivityModelFlag, int *TurbulenceClosureFlag, int *TurbulenceModelFlag); int cg_equationset_chemistry_read(int *ThermalRelaxationFlag, int *ChemicalKineticsFlag); int cg_equationset_elecmagn_read(int *ElecFldModelFlag, int *MagnFldModelFlag, int *ConductivityModelFlag); int cg_equationset_write(int EquationDimension); int cg_governing_read(GoverningEquationsType_t *EquationsType); int cg_governing_write(GoverningEquationsType_t Equationstype); int cg_diffusion_read(int *diffusion_model); int cg_diffusion_write(const int * diffusion_model); # 1356 "/gpfs/rrcfd/rruk-students/apps/CGNS/include/cgnslib.h" int cg_model_read(const char *ModelLabel, ModelType_t *ModelType); int cg_model_write(const char * ModelLabel, ModelType_t ModelType); int cg_narrays(int *narrays); int cg_array_info(int A, char *ArrayName, DataType_t *DataType, int *DataDimension, cgsize_t *DimensionVector); int cg_array_read(int A, void *Data); int cg_array_read_as(int A, DataType_t type, void *Data); int cg_array_write(const char * ArrayName, DataType_t DataType, int DataDimension, const cgsize_t * DimensionVector, const void * Data); int cg_nuser_data(int *nuser_data); int cg_user_data_read(int Index, char *user_data_name); int cg_user_data_write(const char * user_data_name); int cg_nintegrals(int *nintegrals); int cg_integral_read(int IntegralDataIndex, char *IntegralDataName); int cg_integral_write(const char * IntegralDataName); int cg_rind_read(int *RindData); int cg_rind_write(const int * RindData); int cg_ndescriptors(int *ndescriptors); int cg_descriptor_read(int descr_no, char *descr_name, char **descr_text); int cg_descriptor_write(const char * descr_name, const char * descr_text); int cg_nunits(int *nunits); int cg_units_read (MassUnits_t *mass, LengthUnits_t *length, TimeUnits_t *time, TemperatureUnits_t *temperature, AngleUnits_t *angle); int cg_units_write (MassUnits_t mass, LengthUnits_t length, TimeUnits_t time, TemperatureUnits_t temperature, AngleUnits_t angle); int cg_unitsfull_read (MassUnits_t *mass, LengthUnits_t *length, TimeUnits_t *time, TemperatureUnits_t *temperature, AngleUnits_t *angle, ElectricCurrentUnits_t *current, SubstanceAmountUnits_t *amount, LuminousIntensityUnits_t *intensity); int cg_unitsfull_write(MassUnits_t mass, LengthUnits_t length, TimeUnits_t time, TemperatureUnits_t temperature, AngleUnits_t angle, ElectricCurrentUnits_t current, SubstanceAmountUnits_t amount, LuminousIntensityUnits_t intensity); int cg_exponents_info(DataType_t *DataType); int cg_nexponents(int *numexp); int cg_exponents_read(void *exponents); int cg_exponents_write(DataType_t DataType, const void * exponents); int cg_expfull_read(void *exponents); int cg_expfull_write(DataType_t DataType, const void * exponents); int cg_conversion_info(DataType_t *DataType); int cg_conversion_read(void *ConversionFactors); int cg_conversion_write(DataType_t DataType, const void * ConversionFactors); int cg_dataclass_read(DataClass_t *dataclass); int cg_dataclass_write(DataClass_t dataclass); int cg_gridlocation_read(GridLocation_t *GridLocation); int cg_gridlocation_write(GridLocation_t GridLocation); int cg_ordinal_read(int *Ordinal); int cg_ordinal_write(int Ordinal); int cg_ptset_info(PointSetType_t *ptset_type, cgsize_t *npnts); int cg_ptset_write(PointSetType_t ptset_type, cgsize_t npnts, const cgsize_t *pnts); int cg_ptset_read(cgsize_t *pnts); int cg_is_link(int *path_length); int cg_link_read(char **filename, char **link_path); int cg_link_write(const char * nodename, const char * filename, const char * name_in_file); int cg_delete_node(const char *node_name); int cg_free(void *data); const char *cg_get_error(void); void cg_error_exit(void); void cg_error_print(void); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['cgnslib.h'] in ['/gpfs/rrcfd/rruk-students/apps/CGNS/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.cgns(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:684) TESTING: checkSharedLibrary from config.packages.cgns(config/BuildSystem/config/package.py:684) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST locateC2html from config.packages.c2html(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/c2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/c2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/c2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/c2html...not found Checking for program /gpfs/apps/CD-adapco/STAR-View+9.04.011/c2html...not found Checking for program /gpfs/apps/CD-adapco/STAR-CCM+9.04.011-R8/star/bin/c2html...not found Checking for program /gpfs/apps/sge62u5/bin/lx-amd64/c2html...not found Checking for program /gpfs/apps/cuda/cuda-7.5/bin/c2html...not found Checking for program /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/c2html...not found Checking for program /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/c2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/c2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/c2html...not found Checking for program /usr/lib64/qt-3.3/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /opt/ibutils/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/bin/c2html...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/c2html...not found Checking for program /gpfs/rrcfd/rruk-students/apps/petsc/bin/win32fe/c2html...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.openmp(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/openmp.py:15) TESTING: configureLibrary from config.packages.openmp(config/BuildSystem/config/packages/openmp.py:15) Checks for -fopenmp compiler flag Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fopenmp Popping language C Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp /tmp/petsc-6utHXg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -fopenmp Popping language FC Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fopenmp -fPIC /tmp/petsc-6utHXg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fopenmp Popping language Cxx ================================================================================== Checking for a functional openmp Not checking for library in Compiler specific search OPENMP: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Compiler specific search OPENMP: ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['omp.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.headers -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/omp.h" 1 3 4 # 34 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/omp.h" 3 4 typedef struct { unsigned char _x[4] __attribute__((__aligned__(4))); } omp_lock_t; typedef struct { unsigned char _x[16] __attribute__((__aligned__(8))); } omp_nest_lock_t; typedef enum omp_sched_t { omp_sched_static = 1, omp_sched_dynamic = 2, omp_sched_guided = 3, omp_sched_auto = 4 } omp_sched_t; typedef enum omp_proc_bind_t { omp_proc_bind_false = 0, omp_proc_bind_true = 1, omp_proc_bind_master = 2, omp_proc_bind_close = 3, omp_proc_bind_spread = 4 } omp_proc_bind_t; # 71 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/omp.h" 3 4 extern void omp_set_num_threads (int) __attribute__((__nothrow__)); extern int omp_get_num_threads (void) __attribute__((__nothrow__)); extern int omp_get_max_threads (void) __attribute__((__nothrow__)); extern int omp_get_thread_num (void) __attribute__((__nothrow__)); extern int omp_get_num_procs (void) __attribute__((__nothrow__)); extern int omp_in_parallel (void) __attribute__((__nothrow__)); extern void omp_set_dynamic (int) __attribute__((__nothrow__)); extern int omp_get_dynamic (void) __attribute__((__nothrow__)); extern void omp_set_nested (int) __attribute__((__nothrow__)); extern int omp_get_nested (void) __attribute__((__nothrow__)); extern void omp_init_lock (omp_lock_t *) __attribute__((__nothrow__)); extern void omp_destroy_lock (omp_lock_t *) __attribute__((__nothrow__)); extern void omp_set_lock (omp_lock_t *) __attribute__((__nothrow__)); extern void omp_unset_lock (omp_lock_t *) __attribute__((__nothrow__)); extern int omp_test_lock (omp_lock_t *) __attribute__((__nothrow__)); extern void omp_init_nest_lock (omp_nest_lock_t *) __attribute__((__nothrow__)); extern void omp_destroy_nest_lock (omp_nest_lock_t *) __attribute__((__nothrow__)); extern void omp_set_nest_lock (omp_nest_lock_t *) __attribute__((__nothrow__)); extern void omp_unset_nest_lock (omp_nest_lock_t *) __attribute__((__nothrow__)); extern int omp_test_nest_lock (omp_nest_lock_t *) __attribute__((__nothrow__)); extern double omp_get_wtime (void) __attribute__((__nothrow__)); extern double omp_get_wtick (void) __attribute__((__nothrow__)); extern void omp_set_schedule (omp_sched_t, int) __attribute__((__nothrow__)); extern void omp_get_schedule (omp_sched_t *, int *) __attribute__((__nothrow__)); extern int omp_get_thread_limit (void) __attribute__((__nothrow__)); extern void omp_set_max_active_levels (int) __attribute__((__nothrow__)); extern int omp_get_max_active_levels (void) __attribute__((__nothrow__)); extern int omp_get_level (void) __attribute__((__nothrow__)); extern int omp_get_ancestor_thread_num (int) __attribute__((__nothrow__)); extern int omp_get_team_size (int) __attribute__((__nothrow__)); extern int omp_get_active_level (void) __attribute__((__nothrow__)); extern int omp_in_final (void) __attribute__((__nothrow__)); extern int omp_get_cancellation (void) __attribute__((__nothrow__)); extern omp_proc_bind_t omp_get_proc_bind (void) __attribute__((__nothrow__)); extern void omp_set_default_device (int) __attribute__((__nothrow__)); extern int omp_get_default_device (void) __attribute__((__nothrow__)); extern int omp_get_num_devices (void) __attribute__((__nothrow__)); extern int omp_get_num_teams (void) __attribute__((__nothrow__)); extern int omp_get_team_num (void) __attribute__((__nothrow__)); extern int omp_is_initial_device (void) __attribute__((__nothrow__)); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['omp.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.openmp(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:684) TESTING: checkSharedLibrary from config.packages.openmp(config/BuildSystem/config/package.py:684) By default we don't care about checking if the library is shared Popping language C Pushing language C ================================================================================ TEST configureLibrary from config.packages.hwloc(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:626) TESTING: configureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:626) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional hwloc Checking for library in Compiler specific search HWLOC: [] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_hwloc_topology_init': conftest.c:(.text+0xa): undefined reference to `hwloc_topology_init' collect2: error: ld returned 1 exit status Popping language C Checking for library in Compiler specific search HWLOC: ['libhwloc.a'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -lhwloc -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language C Checking for library in Compiler specific search HWLOC: ['libhwloc.a', 'libxml2.a'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -lhwloc -lxml2 -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a'] Contents: ['games', 'etc', 'lib64', 'include', 'bin', 'lib', 'libexec', 'src', 'share', 'sbin'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a', 'libxml2.a'] Contents: ['games', 'etc', 'lib64', 'include', 'bin', 'lib', 'libexec', 'src', 'share', 'sbin'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -lxml2 -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib64/libhwloc.a'] Contents: ['games', 'etc', 'lib64', 'include', 'bin', 'lib', 'libexec', 'src', 'share', 'sbin'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib64/libhwloc.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lhwloc -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib64/libhwloc.a', 'libxml2.a'] Contents: ['games', 'etc', 'lib64', 'include', 'bin', 'lib', 'libexec', 'src', 'share', 'sbin'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib64/libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lhwloc -lxml2 -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language C HWLOC: SearchDir DirPath not found.. skipping: /opt/local ================================================================================ TEST checkSharedLibrary from config.packages.hwloc(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:684) TESTING: checkSharedLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:684) By default we don't care about checking if the library is shared Popping language C Pushing language C ================================================================================ TEST configureLibrary from config.packages.X(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:626) TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:626) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_XSetWMName': conftest.c:(.text+0xa): undefined reference to `XSetWMName' collect2: error: ld returned 1 exit status Popping language C Checking for library in Compiler specific search X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -lX11 -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBX11" to "1" Popping language C Checking for headers Compiler specific search X: ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.headers -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/usr/include/X11/Xlib.h" 1 3 4 # 38 "/usr/include/X11/Xlib.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 39 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/X.h" 1 3 4 # 66 "/usr/include/X11/X.h" 3 4 typedef unsigned long XID; typedef unsigned long Mask; typedef unsigned long Atom; typedef unsigned long VisualID; typedef unsigned long Time; # 96 "/usr/include/X11/X.h" 3 4 typedef XID Window; typedef XID Drawable; typedef XID Font; typedef XID Pixmap; typedef XID Cursor; typedef XID Colormap; typedef XID GContext; typedef XID KeySym; typedef unsigned char KeyCode; # 45 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/Xfuncproto.h" 1 3 4 # 48 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/Xosdefs.h" 1 3 4 # 49 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 147 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 52 "/usr/include/X11/Xlib.h" 2 3 4 # 69 "/usr/include/X11/Xlib.h" 3 4 extern int _Xmblen( char *str, int len ); typedef char *XPointer; # 156 "/usr/include/X11/Xlib.h" 3 4 typedef struct _XExtData { int number; struct _XExtData *next; int (*free_private)( struct _XExtData *extension ); XPointer private_data; } XExtData; typedef struct { int extension; int major_opcode; int first_event; int first_error; } XExtCodes; typedef struct { int depth; int bits_per_pixel; int scanline_pad; } XPixmapFormatValues; typedef struct { int function; unsigned long plane_mask; unsigned long foreground; unsigned long background; int line_width; int line_style; int cap_style; int join_style; int fill_style; int fill_rule; int arc_mode; Pixmap tile; Pixmap stipple; int ts_x_origin; int ts_y_origin; Font font; int subwindow_mode; int graphics_exposures; int clip_x_origin; int clip_y_origin; Pixmap clip_mask; int dash_offset; char dashes; } XGCValues; typedef struct _XGC *GC; typedef struct { XExtData *ext_data; VisualID visualid; int class; unsigned long red_mask, green_mask, blue_mask; int bits_per_rgb; int map_entries; } Visual; typedef struct { int depth; int nvisuals; Visual *visuals; } Depth; struct _XDisplay; typedef struct { XExtData *ext_data; struct _XDisplay *display; Window root; int width, height; int mwidth, mheight; int ndepths; Depth *depths; int root_depth; Visual *root_visual; GC default_gc; Colormap cmap; unsigned long white_pixel; unsigned long black_pixel; int max_maps, min_maps; int backing_store; int save_unders; long root_input_mask; } Screen; typedef struct { XExtData *ext_data; int depth; int bits_per_pixel; int scanline_pad; } ScreenFormat; typedef struct { Pixmap background_pixmap; unsigned long background_pixel; Pixmap border_pixmap; unsigned long border_pixel; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; long event_mask; long do_not_propagate_mask; int override_redirect; Colormap colormap; Cursor cursor; } XSetWindowAttributes; typedef struct { int x, y; int width, height; int border_width; int depth; Visual *visual; Window root; int class; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; Colormap colormap; int map_installed; int map_state; long all_event_masks; long your_event_mask; long do_not_propagate_mask; int override_redirect; Screen *screen; } XWindowAttributes; typedef struct { int family; int length; char *address; } XHostAddress; typedef struct { int typelength; int valuelength; char *type; char *value; } XServerInterpretedAddress; typedef struct _XImage { int width, height; int xoffset; int format; char *data; int byte_order; int bitmap_unit; int bitmap_bit_order; int bitmap_pad; int depth; int bytes_per_line; int bits_per_pixel; unsigned long red_mask; unsigned long green_mask; unsigned long blue_mask; XPointer obdata; struct funcs { struct _XImage *(*create_image)( struct _XDisplay* , Visual* , unsigned int , int , int , char* , unsigned int , unsigned int , int , int ); int (*destroy_image) (struct _XImage *); unsigned long (*get_pixel) (struct _XImage *, int, int); int (*put_pixel) (struct _XImage *, int, int, unsigned long); struct _XImage *(*sub_image)(struct _XImage *, int, int, unsigned int, unsigned int); int (*add_pixel) (struct _XImage *, long); } f; } XImage; typedef struct { int x, y; int width, height; int border_width; Window sibling; int stack_mode; } XWindowChanges; typedef struct { unsigned long pixel; unsigned short red, green, blue; char flags; char pad; } XColor; typedef struct { short x1, y1, x2, y2; } XSegment; typedef struct { short x, y; } XPoint; typedef struct { short x, y; unsigned short width, height; } XRectangle; typedef struct { short x, y; unsigned short width, height; short angle1, angle2; } XArc; typedef struct { int key_click_percent; int bell_percent; int bell_pitch; int bell_duration; int led; int led_mode; int key; int auto_repeat_mode; } XKeyboardControl; typedef struct { int key_click_percent; int bell_percent; unsigned int bell_pitch, bell_duration; unsigned long led_mask; int global_auto_repeat; char auto_repeats[32]; } XKeyboardState; typedef struct { Time time; short x, y; } XTimeCoord; typedef struct { int max_keypermod; KeyCode *modifiermap; } XModifierKeymap; # 495 "/usr/include/X11/Xlib.h" 3 4 typedef struct _XDisplay Display; struct _XPrivate; struct _XrmHashBucketRec; typedef struct { XExtData *ext_data; struct _XPrivate *private1; int fd; int private2; int proto_major_version; int proto_minor_version; char *vendor; XID private3; XID private4; XID private5; int private6; XID (*resource_alloc)( struct _XDisplay* ); int byte_order; int bitmap_unit; int bitmap_pad; int bitmap_bit_order; int nformats; ScreenFormat *pixmap_format; int private8; int release; struct _XPrivate *private9, *private10; int qlen; unsigned long last_request_read; unsigned long request; XPointer private11; XPointer private12; XPointer private13; XPointer private14; unsigned max_request_size; struct _XrmHashBucketRec *db; int (*private15)( struct _XDisplay* ); char *display_name; int default_screen; int nscreens; Screen *screens; unsigned long motion_buffer; unsigned long private16; int min_keycode; int max_keycode; XPointer private17; XPointer private18; int private19; char *xdefaults; } *_XPrivDisplay; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int keycode; int same_screen; } XKeyEvent; typedef XKeyEvent XKeyPressedEvent; typedef XKeyEvent XKeyReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int button; int same_screen; } XButtonEvent; typedef XButtonEvent XButtonPressedEvent; typedef XButtonEvent XButtonReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; char is_hint; int same_screen; } XMotionEvent; typedef XMotionEvent XPointerMovedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; int mode; int detail; int same_screen; int focus; unsigned int state; } XCrossingEvent; typedef XCrossingEvent XEnterWindowEvent; typedef XCrossingEvent XLeaveWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int mode; int detail; } XFocusChangeEvent; typedef XFocusChangeEvent XFocusInEvent; typedef XFocusChangeEvent XFocusOutEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; char key_vector[32]; } XKeymapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int x, y; int width, height; int count; } XExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int x, y; int width, height; int count; int major_code; int minor_code; } XGraphicsExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int major_code; int minor_code; } XNoExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int state; } XVisibilityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; int override_redirect; } XCreateWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; } XDestroyWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int from_configure; } XUnmapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int override_redirect; } XMapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; } XMapRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; Window parent; int x, y; int override_redirect; } XReparentEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; int width, height; int border_width; Window above; int override_redirect; } XConfigureEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; } XGravityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int width, height; } XResizeRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; Window above; int detail; unsigned long value_mask; } XConfigureRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int place; } XCirculateEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int place; } XCirculateRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom atom; Time time; int state; } XPropertyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom selection; Time time; } XSelectionClearEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window owner; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Colormap colormap; int new; int state; } XColormapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom message_type; int format; union { char b[20]; short s[10]; long l[5]; } data; } XClientMessageEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int request; int first_keycode; int count; } XMappingEvent; typedef struct { int type; Display *display; XID resourceid; unsigned long serial; unsigned char error_code; unsigned char request_code; unsigned char minor_code; } XErrorEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; } XAnyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; } XGenericEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; unsigned int cookie; void *data; } XGenericEventCookie; typedef union _XEvent { int type; XAnyEvent xany; XKeyEvent xkey; XButtonEvent xbutton; XMotionEvent xmotion; XCrossingEvent xcrossing; XFocusChangeEvent xfocus; XExposeEvent xexpose; XGraphicsExposeEvent xgraphicsexpose; XNoExposeEvent xnoexpose; XVisibilityEvent xvisibility; XCreateWindowEvent xcreatewindow; XDestroyWindowEvent xdestroywindow; XUnmapEvent xunmap; XMapEvent xmap; XMapRequestEvent xmaprequest; XReparentEvent xreparent; XConfigureEvent xconfigure; XGravityEvent xgravity; XResizeRequestEvent xresizerequest; XConfigureRequestEvent xconfigurerequest; XCirculateEvent xcirculate; XCirculateRequestEvent xcirculaterequest; XPropertyEvent xproperty; XSelectionClearEvent xselectionclear; XSelectionRequestEvent xselectionrequest; XSelectionEvent xselection; XColormapEvent xcolormap; XClientMessageEvent xclient; XMappingEvent xmapping; XErrorEvent xerror; XKeymapEvent xkeymap; XGenericEvent xgeneric; XGenericEventCookie xcookie; long pad[24]; } XEvent; typedef struct { short lbearing; short rbearing; short width; short ascent; short descent; unsigned short attributes; } XCharStruct; typedef struct { Atom name; unsigned long card32; } XFontProp; typedef struct { XExtData *ext_data; Font fid; unsigned direction; unsigned min_char_or_byte2; unsigned max_char_or_byte2; unsigned min_byte1; unsigned max_byte1; int all_chars_exist; unsigned default_char; int n_properties; XFontProp *properties; XCharStruct min_bounds; XCharStruct max_bounds; XCharStruct *per_char; int ascent; int descent; } XFontStruct; typedef struct { char *chars; int nchars; int delta; Font font; } XTextItem; typedef struct { unsigned char byte1; unsigned char byte2; } XChar2b; typedef struct { XChar2b *chars; int nchars; int delta; Font font; } XTextItem16; typedef union { Display *display; GC gc; Visual *visual; Screen *screen; ScreenFormat *pixmap_format; XFontStruct *font; } XEDataObject; typedef struct { XRectangle max_ink_extent; XRectangle max_logical_extent; } XFontSetExtents; typedef struct _XOM *XOM; typedef struct _XOC *XOC, *XFontSet; typedef struct { char *chars; int nchars; int delta; XFontSet font_set; } XmbTextItem; typedef struct { wchar_t *chars; int nchars; int delta; XFontSet font_set; } XwcTextItem; # 1129 "/usr/include/X11/Xlib.h" 3 4 typedef struct { int charset_count; char **charset_list; } XOMCharSetList; typedef enum { XOMOrientation_LTR_TTB, XOMOrientation_RTL_TTB, XOMOrientation_TTB_LTR, XOMOrientation_TTB_RTL, XOMOrientation_Context } XOrientation; typedef struct { int num_orientation; XOrientation *orientation; } XOMOrientation; typedef struct { int num_font; XFontStruct **font_struct_list; char **font_name_list; } XOMFontInfo; typedef struct _XIM *XIM; typedef struct _XIC *XIC; typedef void (*XIMProc)( XIM, XPointer, XPointer ); typedef int (*XICProc)( XIC, XPointer, XPointer ); typedef void (*XIDProc)( Display*, XPointer, XPointer ); typedef unsigned long XIMStyle; typedef struct { unsigned short count_styles; XIMStyle *supported_styles; } XIMStyles; # 1241 "/usr/include/X11/Xlib.h" 3 4 typedef void *XVaNestedList; typedef struct { XPointer client_data; XIMProc callback; } XIMCallback; typedef struct { XPointer client_data; XICProc callback; } XICCallback; typedef unsigned long XIMFeedback; # 1265 "/usr/include/X11/Xlib.h" 3 4 typedef struct _XIMText { unsigned short length; XIMFeedback *feedback; int encoding_is_wchar; union { char *multi_byte; wchar_t *wide_char; } string; } XIMText; typedef unsigned long XIMPreeditState; typedef struct _XIMPreeditStateNotifyCallbackStruct { XIMPreeditState state; } XIMPreeditStateNotifyCallbackStruct; typedef unsigned long XIMResetState; typedef unsigned long XIMStringConversionFeedback; # 1299 "/usr/include/X11/Xlib.h" 3 4 typedef struct _XIMStringConversionText { unsigned short length; XIMStringConversionFeedback *feedback; int encoding_is_wchar; union { char *mbs; wchar_t *wcs; } string; } XIMStringConversionText; typedef unsigned short XIMStringConversionPosition; typedef unsigned short XIMStringConversionType; typedef unsigned short XIMStringConversionOperation; typedef enum { XIMForwardChar, XIMBackwardChar, XIMForwardWord, XIMBackwardWord, XIMCaretUp, XIMCaretDown, XIMNextLine, XIMPreviousLine, XIMLineStart, XIMLineEnd, XIMAbsolutePosition, XIMDontChange } XIMCaretDirection; typedef struct _XIMStringConversionCallbackStruct { XIMStringConversionPosition position; XIMCaretDirection direction; XIMStringConversionOperation operation; unsigned short factor; XIMStringConversionText *text; } XIMStringConversionCallbackStruct; typedef struct _XIMPreeditDrawCallbackStruct { int caret; int chg_first; int chg_length; XIMText *text; } XIMPreeditDrawCallbackStruct; typedef enum { XIMIsInvisible, XIMIsPrimary, XIMIsSecondary } XIMCaretStyle; typedef struct _XIMPreeditCaretCallbackStruct { int position; XIMCaretDirection direction; XIMCaretStyle style; } XIMPreeditCaretCallbackStruct; typedef enum { XIMTextType, XIMBitmapType } XIMStatusDataType; typedef struct _XIMStatusDrawCallbackStruct { XIMStatusDataType type; union { XIMText *text; Pixmap bitmap; } data; } XIMStatusDrawCallbackStruct; typedef struct _XIMHotKeyTrigger { KeySym keysym; int modifier; int modifier_mask; } XIMHotKeyTrigger; typedef struct _XIMHotKeyTriggers { int num_hot_key; XIMHotKeyTrigger *key; } XIMHotKeyTriggers; typedef unsigned long XIMHotKeyState; typedef struct { unsigned short count_values; char **supported_values; } XIMValuesList; extern int _Xdebug; extern XFontStruct *XLoadQueryFont( Display* , const char* ); extern XFontStruct *XQueryFont( Display* , XID ); extern XTimeCoord *XGetMotionEvents( Display* , Window , Time , Time , int* ); extern XModifierKeymap *XDeleteModifiermapEntry( XModifierKeymap* , KeyCode , int ); extern XModifierKeymap *XGetModifierMapping( Display* ); extern XModifierKeymap *XInsertModifiermapEntry( XModifierKeymap* , KeyCode , int ); extern XModifierKeymap *XNewModifiermap( int ); extern XImage *XCreateImage( Display* , Visual* , unsigned int , int , int , char* , unsigned int , unsigned int , int , int ); extern int XInitImage( XImage* ); extern XImage *XGetImage( Display* , Drawable , int , int , unsigned int , unsigned int , unsigned long , int ); extern XImage *XGetSubImage( Display* , Drawable , int , int , unsigned int , unsigned int , unsigned long , int , XImage* , int , int ); extern Display *XOpenDisplay( const char* ); extern void XrmInitialize( void ); extern char *XFetchBytes( Display* , int* ); extern char *XFetchBuffer( Display* , int* , int ); extern char *XGetAtomName( Display* , Atom ); extern int XGetAtomNames( Display* , Atom* , int , char** ); extern char *XGetDefault( Display* , const char* , const char* ); extern char *XDisplayName( const char* ); extern char *XKeysymToString( KeySym ); extern int (*XSynchronize( Display* , int ))( Display* ); extern int (*XSetAfterFunction( Display* , int (*) ( Display* ) ))( Display* ); extern Atom XInternAtom( Display* , const char* , int ); extern int XInternAtoms( Display* , char** , int , int , Atom* ); extern Colormap XCopyColormapAndFree( Display* , Colormap ); extern Colormap XCreateColormap( Display* , Window , Visual* , int ); extern Cursor XCreatePixmapCursor( Display* , Pixmap , Pixmap , XColor* , XColor* , unsigned int , unsigned int ); extern Cursor XCreateGlyphCursor( Display* , Font , Font , unsigned int , unsigned int , XColor const * , XColor const * ); extern Cursor XCreateFontCursor( Display* , unsigned int ); extern Font XLoadFont( Display* , const char* ); extern GC XCreateGC( Display* , Drawable , unsigned long , XGCValues* ); extern GContext XGContextFromGC( GC ); extern void XFlushGC( Display* , GC ); extern Pixmap XCreatePixmap( Display* , Drawable , unsigned int , unsigned int , unsigned int ); extern Pixmap XCreateBitmapFromData( Display* , Drawable , const char* , unsigned int , unsigned int ); extern Pixmap XCreatePixmapFromBitmapData( Display* , Drawable , char* , unsigned int , unsigned int , unsigned long , unsigned long , unsigned int ); extern Window XCreateSimpleWindow( Display* , Window , int , int , unsigned int , unsigned int , unsigned int , unsigned long , unsigned long ); extern Window XGetSelectionOwner( Display* , Atom ); extern Window XCreateWindow( Display* , Window , int , int , unsigned int , unsigned int , unsigned int , int , unsigned int , Visual* , unsigned long , XSetWindowAttributes* ); extern Colormap *XListInstalledColormaps( Display* , Window , int* ); extern char **XListFonts( Display* , const char* , int , int* ); extern char **XListFontsWithInfo( Display* , const char* , int , int* , XFontStruct** ); extern char **XGetFontPath( Display* , int* ); extern char **XListExtensions( Display* , int* ); extern Atom *XListProperties( Display* , Window , int* ); extern XHostAddress *XListHosts( Display* , int* , int* ); __attribute__((deprecated)) extern KeySym XKeycodeToKeysym( Display* , KeyCode , int ); extern KeySym XLookupKeysym( XKeyEvent* , int ); extern KeySym *XGetKeyboardMapping( Display* , KeyCode , int , int* ); extern KeySym XStringToKeysym( const char* ); extern long XMaxRequestSize( Display* ); extern long XExtendedMaxRequestSize( Display* ); extern char *XResourceManagerString( Display* ); extern char *XScreenResourceString( Screen* ); extern unsigned long XDisplayMotionBufferSize( Display* ); extern VisualID XVisualIDFromVisual( Visual* ); extern int XInitThreads( void ); extern void XLockDisplay( Display* ); extern void XUnlockDisplay( Display* ); extern XExtCodes *XInitExtension( Display* , const char* ); extern XExtCodes *XAddExtension( Display* ); extern XExtData *XFindOnExtensionList( XExtData** , int ); extern XExtData **XEHeadOfExtensionList( XEDataObject ); extern Window XRootWindow( Display* , int ); extern Window XDefaultRootWindow( Display* ); extern Window XRootWindowOfScreen( Screen* ); extern Visual *XDefaultVisual( Display* , int ); extern Visual *XDefaultVisualOfScreen( Screen* ); extern GC XDefaultGC( Display* , int ); extern GC XDefaultGCOfScreen( Screen* ); extern unsigned long XBlackPixel( Display* , int ); extern unsigned long XWhitePixel( Display* , int ); extern unsigned long XAllPlanes( void ); extern unsigned long XBlackPixelOfScreen( Screen* ); extern unsigned long XWhitePixelOfScreen( Screen* ); extern unsigned long XNextRequest( Display* ); extern unsigned long XLastKnownRequestProcessed( Display* ); extern char *XServerVendor( Display* ); extern char *XDisplayString( Display* ); extern Colormap XDefaultColormap( Display* , int ); extern Colormap XDefaultColormapOfScreen( Screen* ); extern Display *XDisplayOfScreen( Screen* ); extern Screen *XScreenOfDisplay( Display* , int ); extern Screen *XDefaultScreenOfDisplay( Display* ); extern long XEventMaskOfScreen( Screen* ); extern int XScreenNumberOfScreen( Screen* ); typedef int (*XErrorHandler) ( Display* , XErrorEvent* ); extern XErrorHandler XSetErrorHandler ( XErrorHandler ); typedef int (*XIOErrorHandler) ( Display* ); extern XIOErrorHandler XSetIOErrorHandler ( XIOErrorHandler ); extern XPixmapFormatValues *XListPixmapFormats( Display* , int* ); extern int *XListDepths( Display* , int , int* ); extern int XReconfigureWMWindow( Display* , Window , int , unsigned int , XWindowChanges* ); extern int XGetWMProtocols( Display* , Window , Atom** , int* ); extern int XSetWMProtocols( Display* , Window , Atom* , int ); extern int XIconifyWindow( Display* , Window , int ); extern int XWithdrawWindow( Display* , Window , int ); extern int XGetCommand( Display* , Window , char*** , int* ); extern int XGetWMColormapWindows( Display* , Window , Window** , int* ); extern int XSetWMColormapWindows( Display* , Window , Window* , int ); extern void XFreeStringList( char** ); extern int XSetTransientForHint( Display* , Window , Window ); extern int XActivateScreenSaver( Display* ); extern int XAddHost( Display* , XHostAddress* ); extern int XAddHosts( Display* , XHostAddress* , int ); extern int XAddToExtensionList( struct _XExtData** , XExtData* ); extern int XAddToSaveSet( Display* , Window ); extern int XAllocColor( Display* , Colormap , XColor* ); extern int XAllocColorCells( Display* , Colormap , int , unsigned long* , unsigned int , unsigned long* , unsigned int ); extern int XAllocColorPlanes( Display* , Colormap , int , unsigned long* , int , int , int , int , unsigned long* , unsigned long* , unsigned long* ); extern int XAllocNamedColor( Display* , Colormap , const char* , XColor* , XColor* ); extern int XAllowEvents( Display* , int , Time ); extern int XAutoRepeatOff( Display* ); extern int XAutoRepeatOn( Display* ); extern int XBell( Display* , int ); extern int XBitmapBitOrder( Display* ); extern int XBitmapPad( Display* ); extern int XBitmapUnit( Display* ); extern int XCellsOfScreen( Screen* ); extern int XChangeActivePointerGrab( Display* , unsigned int , Cursor , Time ); extern int XChangeGC( Display* , GC , unsigned long , XGCValues* ); extern int XChangeKeyboardControl( Display* , unsigned long , XKeyboardControl* ); extern int XChangeKeyboardMapping( Display* , int , int , KeySym* , int ); extern int XChangePointerControl( Display* , int , int , int , int , int ); extern int XChangeProperty( Display* , Window , Atom , Atom , int , int , const unsigned char* , int ); extern int XChangeSaveSet( Display* , Window , int ); extern int XChangeWindowAttributes( Display* , Window , unsigned long , XSetWindowAttributes* ); extern int XCheckIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XCheckMaskEvent( Display* , long , XEvent* ); extern int XCheckTypedEvent( Display* , int , XEvent* ); extern int XCheckTypedWindowEvent( Display* , Window , int , XEvent* ); extern int XCheckWindowEvent( Display* , Window , long , XEvent* ); extern int XCirculateSubwindows( Display* , Window , int ); extern int XCirculateSubwindowsDown( Display* , Window ); extern int XCirculateSubwindowsUp( Display* , Window ); extern int XClearArea( Display* , Window , int , int , unsigned int , unsigned int , int ); extern int XClearWindow( Display* , Window ); extern int XCloseDisplay( Display* ); extern int XConfigureWindow( Display* , Window , unsigned int , XWindowChanges* ); extern int XConnectionNumber( Display* ); extern int XConvertSelection( Display* , Atom , Atom , Atom , Window , Time ); extern int XCopyArea( Display* , Drawable , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XCopyGC( Display* , GC , unsigned long , GC ); extern int XCopyPlane( Display* , Drawable , Drawable , GC , int , int , unsigned int , unsigned int , int , int , unsigned long ); extern int XDefaultDepth( Display* , int ); extern int XDefaultDepthOfScreen( Screen* ); extern int XDefaultScreen( Display* ); extern int XDefineCursor( Display* , Window , Cursor ); extern int XDeleteProperty( Display* , Window , Atom ); extern int XDestroyWindow( Display* , Window ); extern int XDestroySubwindows( Display* , Window ); extern int XDoesBackingStore( Screen* ); extern int XDoesSaveUnders( Screen* ); extern int XDisableAccessControl( Display* ); extern int XDisplayCells( Display* , int ); extern int XDisplayHeight( Display* , int ); extern int XDisplayHeightMM( Display* , int ); extern int XDisplayKeycodes( Display* , int* , int* ); extern int XDisplayPlanes( Display* , int ); extern int XDisplayWidth( Display* , int ); extern int XDisplayWidthMM( Display* , int ); extern int XDrawArc( Display* , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XDrawArcs( Display* , Drawable , GC , XArc* , int ); extern int XDrawImageString( Display* , Drawable , GC , int , int , const char* , int ); extern int XDrawImageString16( Display* , Drawable , GC , int , int , const XChar2b* , int ); extern int XDrawLine( Display* , Drawable , GC , int , int , int , int ); extern int XDrawLines( Display* , Drawable , GC , XPoint* , int , int ); extern int XDrawPoint( Display* , Drawable , GC , int , int ); extern int XDrawPoints( Display* , Drawable , GC , XPoint* , int , int ); extern int XDrawRectangle( Display* , Drawable , GC , int , int , unsigned int , unsigned int ); extern int XDrawRectangles( Display* , Drawable , GC , XRectangle* , int ); extern int XDrawSegments( Display* , Drawable , GC , XSegment* , int ); extern int XDrawString( Display* , Drawable , GC , int , int , const char* , int ); extern int XDrawString16( Display* , Drawable , GC , int , int , const XChar2b* , int ); extern int XDrawText( Display* , Drawable , GC , int , int , XTextItem* , int ); extern int XDrawText16( Display* , Drawable , GC , int , int , XTextItem16* , int ); extern int XEnableAccessControl( Display* ); extern int XEventsQueued( Display* , int ); extern int XFetchName( Display* , Window , char** ); extern int XFillArc( Display* , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XFillArcs( Display* , Drawable , GC , XArc* , int ); extern int XFillPolygon( Display* , Drawable , GC , XPoint* , int , int , int ); extern int XFillRectangle( Display* , Drawable , GC , int , int , unsigned int , unsigned int ); extern int XFillRectangles( Display* , Drawable , GC , XRectangle* , int ); extern int XFlush( Display* ); extern int XForceScreenSaver( Display* , int ); extern int XFree( void* ); extern int XFreeColormap( Display* , Colormap ); extern int XFreeColors( Display* , Colormap , unsigned long* , int , unsigned long ); extern int XFreeCursor( Display* , Cursor ); extern int XFreeExtensionList( char** ); extern int XFreeFont( Display* , XFontStruct* ); extern int XFreeFontInfo( char** , XFontStruct* , int ); extern int XFreeFontNames( char** ); extern int XFreeFontPath( char** ); extern int XFreeGC( Display* , GC ); extern int XFreeModifiermap( XModifierKeymap* ); extern int XFreePixmap( Display* , Pixmap ); extern int XGeometry( Display* , int , const char* , const char* , unsigned int , unsigned int , unsigned int , int , int , int* , int* , int* , int* ); extern int XGetErrorDatabaseText( Display* , const char* , const char* , const char* , char* , int ); extern int XGetErrorText( Display* , int , char* , int ); extern int XGetFontProperty( XFontStruct* , Atom , unsigned long* ); extern int XGetGCValues( Display* , GC , unsigned long , XGCValues* ); extern int XGetGeometry( Display* , Drawable , Window* , int* , int* , unsigned int* , unsigned int* , unsigned int* , unsigned int* ); extern int XGetIconName( Display* , Window , char** ); extern int XGetInputFocus( Display* , Window* , int* ); extern int XGetKeyboardControl( Display* , XKeyboardState* ); extern int XGetPointerControl( Display* , int* , int* , int* ); extern int XGetPointerMapping( Display* , unsigned char* , int ); extern int XGetScreenSaver( Display* , int* , int* , int* , int* ); extern int XGetTransientForHint( Display* , Window , Window* ); extern int XGetWindowProperty( Display* , Window , Atom , long , long , int , Atom , Atom* , int* , unsigned long* , unsigned long* , unsigned char** ); extern int XGetWindowAttributes( Display* , Window , XWindowAttributes* ); extern int XGrabButton( Display* , unsigned int , unsigned int , Window , int , unsigned int , int , int , Window , Cursor ); extern int XGrabKey( Display* , int , unsigned int , Window , int , int , int ); extern int XGrabKeyboard( Display* , Window , int , int , int , Time ); extern int XGrabPointer( Display* , Window , int , unsigned int , int , int , Window , Cursor , Time ); extern int XGrabServer( Display* ); extern int XHeightMMOfScreen( Screen* ); extern int XHeightOfScreen( Screen* ); extern int XIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XImageByteOrder( Display* ); extern int XInstallColormap( Display* , Colormap ); extern KeyCode XKeysymToKeycode( Display* , KeySym ); extern int XKillClient( Display* , XID ); extern int XLookupColor( Display* , Colormap , const char* , XColor* , XColor* ); extern int XLowerWindow( Display* , Window ); extern int XMapRaised( Display* , Window ); extern int XMapSubwindows( Display* , Window ); extern int XMapWindow( Display* , Window ); extern int XMaskEvent( Display* , long , XEvent* ); extern int XMaxCmapsOfScreen( Screen* ); extern int XMinCmapsOfScreen( Screen* ); extern int XMoveResizeWindow( Display* , Window , int , int , unsigned int , unsigned int ); extern int XMoveWindow( Display* , Window , int , int ); extern int XNextEvent( Display* , XEvent* ); extern int XNoOp( Display* ); extern int XParseColor( Display* , Colormap , const char* , XColor* ); extern int XParseGeometry( const char* , int* , int* , unsigned int* , unsigned int* ); extern int XPeekEvent( Display* , XEvent* ); extern int XPeekIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XPending( Display* ); extern int XPlanesOfScreen( Screen* ); extern int XProtocolRevision( Display* ); extern int XProtocolVersion( Display* ); extern int XPutBackEvent( Display* , XEvent* ); extern int XPutImage( Display* , Drawable , GC , XImage* , int , int , int , int , unsigned int , unsigned int ); extern int XQLength( Display* ); extern int XQueryBestCursor( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestSize( Display* , int , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestStipple( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestTile( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryColor( Display* , Colormap , XColor* ); extern int XQueryColors( Display* , Colormap , XColor* , int ); extern int XQueryExtension( Display* , const char* , int* , int* , int* ); extern int XQueryKeymap( Display* , char [32] ); extern int XQueryPointer( Display* , Window , Window* , Window* , int* , int* , int* , int* , unsigned int* ); extern int XQueryTextExtents( Display* , XID , const char* , int , int* , int* , int* , XCharStruct* ); extern int XQueryTextExtents16( Display* , XID , const XChar2b* , int , int* , int* , int* , XCharStruct* ); extern int XQueryTree( Display* , Window , Window* , Window* , Window** , unsigned int* ); extern int XRaiseWindow( Display* , Window ); extern int XReadBitmapFile( Display* , Drawable , const char* , unsigned int* , unsigned int* , Pixmap* , int* , int* ); extern int XReadBitmapFileData( const char* , unsigned int* , unsigned int* , unsigned char** , int* , int* ); extern int XRebindKeysym( Display* , KeySym , KeySym* , int , const unsigned char* , int ); extern int XRecolorCursor( Display* , Cursor , XColor* , XColor* ); extern int XRefreshKeyboardMapping( XMappingEvent* ); extern int XRemoveFromSaveSet( Display* , Window ); extern int XRemoveHost( Display* , XHostAddress* ); extern int XRemoveHosts( Display* , XHostAddress* , int ); extern int XReparentWindow( Display* , Window , Window , int , int ); extern int XResetScreenSaver( Display* ); extern int XResizeWindow( Display* , Window , unsigned int , unsigned int ); extern int XRestackWindows( Display* , Window* , int ); extern int XRotateBuffers( Display* , int ); extern int XRotateWindowProperties( Display* , Window , Atom* , int , int ); extern int XScreenCount( Display* ); extern int XSelectInput( Display* , Window , long ); extern int XSendEvent( Display* , Window , int , long , XEvent* ); extern int XSetAccessControl( Display* , int ); extern int XSetArcMode( Display* , GC , int ); extern int XSetBackground( Display* , GC , unsigned long ); extern int XSetClipMask( Display* , GC , Pixmap ); extern int XSetClipOrigin( Display* , GC , int , int ); extern int XSetClipRectangles( Display* , GC , int , int , XRectangle* , int , int ); extern int XSetCloseDownMode( Display* , int ); extern int XSetCommand( Display* , Window , char** , int ); extern int XSetDashes( Display* , GC , int , const char* , int ); extern int XSetFillRule( Display* , GC , int ); extern int XSetFillStyle( Display* , GC , int ); extern int XSetFont( Display* , GC , Font ); extern int XSetFontPath( Display* , char** , int ); extern int XSetForeground( Display* , GC , unsigned long ); extern int XSetFunction( Display* , GC , int ); extern int XSetGraphicsExposures( Display* , GC , int ); extern int XSetIconName( Display* , Window , const char* ); extern int XSetInputFocus( Display* , Window , int , Time ); extern int XSetLineAttributes( Display* , GC , unsigned int , int , int , int ); extern int XSetModifierMapping( Display* , XModifierKeymap* ); extern int XSetPlaneMask( Display* , GC , unsigned long ); extern int XSetPointerMapping( Display* , const unsigned char* , int ); extern int XSetScreenSaver( Display* , int , int , int , int ); extern int XSetSelectionOwner( Display* , Atom , Window , Time ); extern int XSetState( Display* , GC , unsigned long , unsigned long , int , unsigned long ); extern int XSetStipple( Display* , GC , Pixmap ); extern int XSetSubwindowMode( Display* , GC , int ); extern int XSetTSOrigin( Display* , GC , int , int ); extern int XSetTile( Display* , GC , Pixmap ); extern int XSetWindowBackground( Display* , Window , unsigned long ); extern int XSetWindowBackgroundPixmap( Display* , Window , Pixmap ); extern int XSetWindowBorder( Display* , Window , unsigned long ); extern int XSetWindowBorderPixmap( Display* , Window , Pixmap ); extern int XSetWindowBorderWidth( Display* , Window , unsigned int ); extern int XSetWindowColormap( Display* , Window , Colormap ); extern int XStoreBuffer( Display* , const char* , int , int ); extern int XStoreBytes( Display* , const char* , int ); extern int XStoreColor( Display* , Colormap , XColor* ); extern int XStoreColors( Display* , Colormap , XColor* , int ); extern int XStoreName( Display* , Window , const char* ); extern int XStoreNamedColor( Display* , Colormap , const char* , unsigned long , int ); extern int XSync( Display* , int ); extern int XTextExtents( XFontStruct* , const char* , int , int* , int* , int* , XCharStruct* ); extern int XTextExtents16( XFontStruct* , const XChar2b* , int , int* , int* , int* , XCharStruct* ); extern int XTextWidth( XFontStruct* , const char* , int ); extern int XTextWidth16( XFontStruct* , const XChar2b* , int ); extern int XTranslateCoordinates( Display* , Window , Window , int , int , int* , int* , Window* ); extern int XUndefineCursor( Display* , Window ); extern int XUngrabButton( Display* , unsigned int , unsigned int , Window ); extern int XUngrabKey( Display* , int , unsigned int , Window ); extern int XUngrabKeyboard( Display* , Time ); extern int XUngrabPointer( Display* , Time ); extern int XUngrabServer( Display* ); extern int XUninstallColormap( Display* , Colormap ); extern int XUnloadFont( Display* , Font ); extern int XUnmapSubwindows( Display* , Window ); extern int XUnmapWindow( Display* , Window ); extern int XVendorRelease( Display* ); extern int XWarpPointer( Display* , Window , Window , int , int , unsigned int , unsigned int , int , int ); extern int XWidthMMOfScreen( Screen* ); extern int XWidthOfScreen( Screen* ); extern int XWindowEvent( Display* , Window , long , XEvent* ); extern int XWriteBitmapFile( Display* , const char* , Pixmap , unsigned int , unsigned int , int , int ); extern int XSupportsLocale (void); extern char *XSetLocaleModifiers( const char* ); extern XOM XOpenOM( Display* , struct _XrmHashBucketRec* , const char* , const char* ); extern int XCloseOM( XOM ); extern char *XSetOMValues( XOM , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetOMValues( XOM , ... ) __attribute__ ((__sentinel__(0))); extern Display *XDisplayOfOM( XOM ); extern char *XLocaleOfOM( XOM ); extern XOC XCreateOC( XOM , ... ) __attribute__ ((__sentinel__(0))); extern void XDestroyOC( XOC ); extern XOM XOMOfOC( XOC ); extern char *XSetOCValues( XOC , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetOCValues( XOC , ... ) __attribute__ ((__sentinel__(0))); extern XFontSet XCreateFontSet( Display* , const char* , char*** , int* , char** ); extern void XFreeFontSet( Display* , XFontSet ); extern int XFontsOfFontSet( XFontSet , XFontStruct*** , char*** ); extern char *XBaseFontNameListOfFontSet( XFontSet ); extern char *XLocaleOfFontSet( XFontSet ); extern int XContextDependentDrawing( XFontSet ); extern int XDirectionalDependentDrawing( XFontSet ); extern int XContextualDrawing( XFontSet ); extern XFontSetExtents *XExtentsOfFontSet( XFontSet ); extern int XmbTextEscapement( XFontSet , const char* , int ); extern int XwcTextEscapement( XFontSet , const wchar_t* , int ); extern int Xutf8TextEscapement( XFontSet , const char* , int ); extern int XmbTextExtents( XFontSet , const char* , int , XRectangle* , XRectangle* ); extern int XwcTextExtents( XFontSet , const wchar_t* , int , XRectangle* , XRectangle* ); extern int Xutf8TextExtents( XFontSet , const char* , int , XRectangle* , XRectangle* ); extern int XmbTextPerCharExtents( XFontSet , const char* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern int XwcTextPerCharExtents( XFontSet , const wchar_t* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern int Xutf8TextPerCharExtents( XFontSet , const char* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern void XmbDrawText( Display* , Drawable , GC , int , int , XmbTextItem* , int ); extern void XwcDrawText( Display* , Drawable , GC , int , int , XwcTextItem* , int ); extern void Xutf8DrawText( Display* , Drawable , GC , int , int , XmbTextItem* , int ); extern void XmbDrawString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XwcDrawString( Display* , Drawable , XFontSet , GC , int , int , const wchar_t* , int ); extern void Xutf8DrawString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XmbDrawImageString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XwcDrawImageString( Display* , Drawable , XFontSet , GC , int , int , const wchar_t* , int ); extern void Xutf8DrawImageString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern XIM XOpenIM( Display* , struct _XrmHashBucketRec* , char* , char* ); extern int XCloseIM( XIM ); extern char *XGetIMValues( XIM , ... ) __attribute__ ((__sentinel__(0))); extern char *XSetIMValues( XIM , ... ) __attribute__ ((__sentinel__(0))); extern Display *XDisplayOfIM( XIM ); extern char *XLocaleOfIM( XIM ); extern XIC XCreateIC( XIM , ... ) __attribute__ ((__sentinel__(0))); extern void XDestroyIC( XIC ); extern void XSetICFocus( XIC ); extern void XUnsetICFocus( XIC ); extern wchar_t *XwcResetIC( XIC ); extern char *XmbResetIC( XIC ); extern char *Xutf8ResetIC( XIC ); extern char *XSetICValues( XIC , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetICValues( XIC , ... ) __attribute__ ((__sentinel__(0))); extern XIM XIMOfIC( XIC ); extern int XFilterEvent( XEvent* , Window ); extern int XmbLookupString( XIC , XKeyPressedEvent* , char* , int , KeySym* , int* ); extern int XwcLookupString( XIC , XKeyPressedEvent* , wchar_t* , int , KeySym* , int* ); extern int Xutf8LookupString( XIC , XKeyPressedEvent* , char* , int , KeySym* , int* ); extern XVaNestedList XVaCreateNestedList( int , ... ) __attribute__ ((__sentinel__(0))); extern int XRegisterIMInstantiateCallback( Display* , struct _XrmHashBucketRec* , char* , char* , XIDProc , XPointer ); extern int XUnregisterIMInstantiateCallback( Display* , struct _XrmHashBucketRec* , char* , char* , XIDProc , XPointer ); typedef void (*XConnectionWatchProc)( Display* , XPointer , int , int , XPointer* ); extern int XInternalConnectionNumbers( Display* , int** , int* ); extern void XProcessInternalConnection( Display* , int ); extern int XAddConnectionWatch( Display* , XConnectionWatchProc , XPointer ); extern void XRemoveConnectionWatch( Display* , XConnectionWatchProc , XPointer ); extern void XSetAuthorization( char * , int , char * , int ); extern int _Xmbtowc( wchar_t * , char * , int ); extern int _Xwctomb( char * , wchar_t ); extern int XGetEventData( Display* , XGenericEventCookie* ); extern void XFreeEventData( Display* , XGenericEventCookie* ); # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['X11/Xlib.h'] in ['/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.X(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:684) TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:684) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.afterimage(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.afterimage(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Triangle(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Numpy(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.Numpy(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/petsc4py.py:102) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:102) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/mpi4py.py:70) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:70) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/Matlab.py:35) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/packages/Matlab.py:35) ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.hdf5(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/hdf5.py:46) TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:46) ================================================================================== Checking for a functional hdf5 Checking for library in User specified root directory HDF5: ['/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] Contents: ['Makefile', 'ACKNOWLEDGMENTS', 'COPYING', 'MANIFEST', 'Makefile.dist', 'Makefile.am', 'Makefile.in', 'm4', 'README.txt', 'aclocal.m4', 'acsite.m4', 'configure', 'configure.ac', 'bin', 'config', 'examples', 'fortran', 'c++', 'release_docs', 'src', 'test', 'testpar', 'tools', 'hl', 'CMakeLists.txt', 'CMakeFilters.cmake', 'CMakeInstallation.cmake', 'CTestConfig.cmake', 'UserMacros.cmake', 'build', 'include', 'share', 'lib'] ================================================================================ TEST check from config.libraries(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [H5T_init] in library ['/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char H5T_init(); static void _check_H5T_init() { H5T_init(); } int main() { _check_H5T_init();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBHDF5HL_FORTRAN" to "1" Defined "HAVE_LIBHDF5_FORTRAN" to "1" Defined "HAVE_LIBHDF5_HL" to "1" Defined "HAVE_LIBHDF5" to "1" Popping language C Checking for headers User specified root directory HDF5: ['/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['hdf5.h'] in ['/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include'] Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.headers -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include /tmp/petsc-6utHXg/config.headers/conftest.c stdout: # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-6utHXg/config.headers/conftest.c" # 1 "/tmp/petsc-6utHXg/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/tmp/petsc-6utHXg/config.headers/conffix.h" 1 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 1 # 24 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 1 # 31 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5pubconf.h" 1 # 32 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5version.h" 1 # 35 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/usr/include/features.h" 1 3 4 # 361 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 365 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 366 "/usr/include/sys/cdefs.h" 2 3 4 # 362 "/usr/include/features.h" 2 3 4 # 385 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 386 "/usr/include/features.h" 2 3 4 # 38 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 41 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 1 3 4 # 34 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/syslimits.h" 1 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 1 3 4 # 168 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/bits/local_lim.h" 2 3 4 # 158 "/usr/include/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 169 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 2 3 4 # 8 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/syslimits.h" 2 3 4 # 35 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include-fixed/limits.h" 2 3 4 # 44 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 1 3 4 # 9 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 49 "/usr/include/stdint.h" 3 4 typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdint.h" 2 3 4 # 48 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/usr/include/inttypes.h" 1 3 4 # 35 "/usr/include/inttypes.h" 3 4 typedef int __gwchar_t; # 274 "/usr/include/inttypes.h" 3 4 typedef struct { long int quot; long int rem; } imaxdiv_t; # 298 "/usr/include/inttypes.h" 3 4 extern intmax_t imaxabs (intmax_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern intmax_t strtoimax (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)); extern uintmax_t strtoumax (__const char *__restrict __nptr, char ** __restrict __endptr, int __base) __attribute__ ((__nothrow__)); extern intmax_t wcstoimax (__const __gwchar_t *__restrict __nptr, __gwchar_t **__restrict __endptr, int __base) __attribute__ ((__nothrow__)); extern uintmax_t wcstoumax (__const __gwchar_t *__restrict __nptr, __gwchar_t ** __restrict __endptr, int __base) __attribute__ ((__nothrow__)); # 442 "/usr/include/inttypes.h" 3 4 # 56 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 147 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 324 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 59 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 1 # 223 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 224 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 2 # 256 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" # 1 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi_portable_platform.h" 1 # 257 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" 2 # 321 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" typedef ptrdiff_t MPI_Aint; typedef long long MPI_Offset; typedef long long MPI_Count; typedef struct ompi_communicator_t *MPI_Comm; typedef struct ompi_datatype_t *MPI_Datatype; typedef struct ompi_errhandler_t *MPI_Errhandler; typedef struct ompi_file_t *MPI_File; typedef struct ompi_group_t *MPI_Group; typedef struct ompi_info_t *MPI_Info; typedef struct ompi_op_t *MPI_Op; typedef struct ompi_request_t *MPI_Request; typedef struct ompi_message_t *MPI_Message; typedef struct ompi_status_public_t MPI_Status; typedef struct ompi_win_t *MPI_Win; typedef struct mca_base_var_enum_t *MPI_T_enum; typedef struct ompi_mpit_cvar_handle_t *MPI_T_cvar_handle; typedef struct mca_base_pvar_handle_t *MPI_T_pvar_handle; typedef struct mca_base_pvar_session_t *MPI_T_pvar_session; struct ompi_status_public_t { int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; int _cancelled; size_t _ucount; }; typedef struct ompi_status_public_t ompi_status_public_t; # 368 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" typedef int (MPI_Copy_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Delete_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype, MPI_Aint *, void *); typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn ; typedef void (ompi_file_errhandler_fn)(MPI_File *, int *, ...); typedef ompi_file_errhandler_fn MPI_File_errhandler_fn ; typedef ompi_file_errhandler_fn MPI_File_errhandler_function; typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn ; typedef void (MPI_Handler_function)(MPI_Comm *, int *, ...); typedef void (MPI_User_function)(void *, void *, int *, MPI_Datatype *); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_cancel_function)(void *, int); # 504 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" enum { MPI_TAG_UB, MPI_HOST, MPI_IO, MPI_WTIME_IS_GLOBAL, MPI_APPNUM, MPI_LASTUSEDCODE, MPI_UNIVERSE_SIZE, MPI_WIN_BASE, MPI_WIN_SIZE, MPI_WIN_DISP_UNIT, MPI_WIN_CREATE_FLAVOR, MPI_WIN_MODEL, IMPI_CLIENT_SIZE, IMPI_CLIENT_COLOR, IMPI_HOST_SIZE, IMPI_HOST_COLOR }; # 619 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" enum { MPI_IDENT, MPI_CONGRUENT, MPI_SIMILAR, MPI_UNEQUAL }; enum { MPI_THREAD_SINGLE, MPI_THREAD_FUNNELED, MPI_THREAD_SERIALIZED, MPI_THREAD_MULTIPLE }; enum { MPI_COMBINER_NAMED, MPI_COMBINER_DUP, MPI_COMBINER_CONTIGUOUS, MPI_COMBINER_VECTOR, MPI_COMBINER_HVECTOR_INTEGER, MPI_COMBINER_HVECTOR, MPI_COMBINER_INDEXED, MPI_COMBINER_HINDEXED_INTEGER, MPI_COMBINER_HINDEXED, MPI_COMBINER_INDEXED_BLOCK, MPI_COMBINER_STRUCT_INTEGER, MPI_COMBINER_STRUCT, MPI_COMBINER_SUBARRAY, MPI_COMBINER_DARRAY, MPI_COMBINER_F90_REAL, MPI_COMBINER_F90_COMPLEX, MPI_COMBINER_F90_INTEGER, MPI_COMBINER_RESIZED, MPI_COMBINER_HINDEXED_BLOCK }; enum { MPI_COMM_TYPE_SHARED }; enum { MPI_T_VERBOSITY_USER_BASIC, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL }; enum { MPI_T_SCOPE_CONSTANT, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ }; enum { MPI_T_BIND_NO_OBJECT, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO }; enum { MPI_T_PVAR_CLASS_STATE, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC }; # 808 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_DELETE_FN( MPI_Datatype datatype, int type_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_COPY_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_DUP_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) ; __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_DELETE_FN( MPI_Win window, int win_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_COPY_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_DUP_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); # 878 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_world; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_self; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_null; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_empty; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_null; __attribute__((visibility("default"))) extern struct ompi_predefined_request_t ompi_request_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_no_proc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_null; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_min; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_max; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_sum; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_prod; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_land; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_band; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_maxloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_minloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_replace; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_no_op; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_datatype_null; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_lb ; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ub ; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_signed_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_byte; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_wchar; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_packed; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_character; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_longdbl_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex32; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_aint; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_offset; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_count; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_float_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_long_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errhandler_null; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_are_fatal; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_return; __attribute__((visibility("default"))) extern struct ompi_predefined_win_t ompi_mpi_win_null; __attribute__((visibility("default"))) extern struct ompi_predefined_file_t ompi_mpi_file_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_env; __attribute__((visibility("default"))) extern int *MPI_F_STATUS_IGNORE; __attribute__((visibility("default"))) extern int *MPI_F_STATUSES_IGNORE; # 1171 "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h" __attribute__((visibility("default"))) int MPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int MPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int MPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int MPI_Address(void *location, MPI_Aint *address) ; __attribute__((visibility("default"))) int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Attr_delete(MPI_Comm comm, int keyval) ; __attribute__((visibility("default"))) int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ; __attribute__((visibility("default"))) int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) ; __attribute__((visibility("default"))) int MPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int MPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int MPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int MPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int MPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int MPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm MPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int MPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int MPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int MPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int MPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int MPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int MPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) MPI_Errhandler MPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ; __attribute__((visibility("default"))) int MPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int MPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File MPI_File_f2c(int file); __attribute__((visibility("default"))) int MPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int MPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int MPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int MPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int MPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int MPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int MPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int MPI_Finalize(void); __attribute__((visibility("default"))) int MPI_Finalized(int *flag); __attribute__((visibility("default"))) int MPI_Free_mem(void *base); __attribute__((visibility("default"))) int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int MPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int MPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group MPI_Group_f2c(int group); __attribute__((visibility("default"))) int MPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int MPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int MPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info MPI_Info_f2c(int info); __attribute__((visibility("default"))) int MPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int MPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int MPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int MPI_Initialized(int *flag); __attribute__((visibility("default"))) int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) ; __attribute__((visibility("default"))) int MPI_Keyval_free(int *keyval) ; __attribute__((visibility("default"))) int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int MPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message MPI_Message_f2c(int message); __attribute__((visibility("default"))) int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int MPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int MPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int MPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op MPI_Op_f2c(int op); __attribute__((visibility("default"))) int MPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Query_thread(int *provided); __attribute__((visibility("default"))) int MPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); __attribute__((visibility("default"))) int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int MPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request MPI_Request_f2c(int request); __attribute__((visibility("default"))) int MPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int MPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int MPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int MPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int MPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int MPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ; __attribute__((visibility("default"))) int MPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype MPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int MPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int MPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int MPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int MPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int MPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) ; __attribute__((visibility("default"))) int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int MPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int MPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int MPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int MPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int MPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) ; __attribute__((visibility("default"))) int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status *array_of_statuses); __attribute__((visibility("default"))) int MPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int MPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int MPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int MPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win MPI_Win_f2c(int win); __attribute__((visibility("default"))) int MPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int MPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int MPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double MPI_Wtick(void); __attribute__((visibility("default"))) double MPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int PMPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int PMPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int PMPI_Address(void *location, MPI_Aint *address) ; __attribute__((visibility("default"))) int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Attr_delete(MPI_Comm comm, int keyval) ; __attribute__((visibility("default"))) int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ; __attribute__((visibility("default"))) int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) ; __attribute__((visibility("default"))) int PMPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int PMPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int PMPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int PMPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm PMPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int PMPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int PMPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int PMPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int PMPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int PMPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) MPI_Errhandler PMPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) ; __attribute__((visibility("default"))) int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ; __attribute__((visibility("default"))) int PMPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int PMPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File PMPI_File_f2c(int file); __attribute__((visibility("default"))) int PMPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int PMPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int PMPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int PMPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int PMPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int PMPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int PMPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int PMPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int PMPI_Finalize(void); __attribute__((visibility("default"))) int PMPI_Finalized(int *flag); __attribute__((visibility("default"))) int PMPI_Free_mem(void *base); __attribute__((visibility("default"))) int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int PMPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group PMPI_Group_f2c(int group); __attribute__((visibility("default"))) int PMPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int PMPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int PMPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info PMPI_Info_f2c(int info); __attribute__((visibility("default"))) int PMPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int PMPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int PMPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int PMPI_Initialized(int *flag); __attribute__((visibility("default"))) int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) ; __attribute__((visibility("default"))) int PMPI_Keyval_free(int *keyval) ; __attribute__((visibility("default"))) int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int PMPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message PMPI_Message_f2c(int message); __attribute__((visibility("default"))) int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int PMPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int PMPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op PMPI_Op_f2c(int op); __attribute__((visibility("default"))) int PMPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Query_thread(int *provided); __attribute__((visibility("default"))) int PMPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op); __attribute__((visibility("default"))) int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int PMPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request PMPI_Request_f2c(int request); __attribute__((visibility("default"))) int PMPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int PMPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int PMPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int PMPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int PMPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int PMPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ; __attribute__((visibility("default"))) int PMPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype PMPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int PMPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int PMPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int PMPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int PMPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int PMPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) ; __attribute__((visibility("default"))) int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int PMPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int PMPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int PMPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int PMPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) ; __attribute__((visibility("default"))) int PMPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) ; __attribute__((visibility("default"))) int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int PMPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int PMPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int PMPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win PMPI_Win_f2c(int win); __attribute__((visibility("default"))) int PMPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int PMPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double PMPI_Wtick(void); __attribute__((visibility("default"))) double PMPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int PMPI_T_finalize (void); __attribute__((visibility("default"))) int PMPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int PMPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int PMPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int PMPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int PMPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int PMPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int PMPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int MPI_T_finalize (void); __attribute__((visibility("default"))) int MPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int MPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int MPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int MPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int MPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int MPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int MPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int MPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); # 62 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5api_adpt.h" 1 # 70 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" 2 # 126 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" typedef int herr_t; # 144 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" typedef unsigned int hbool_t; typedef int htri_t; # 170 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" # 170 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" #pragma GCC diagnostic push # 170 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" # 170 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" #pragma GCC diagnostic ignored "-Wlong-long" # 170 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" typedef unsigned long long hsize_t; typedef signed long long hssize_t; # 173 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" #pragma GCC diagnostic pop # 173 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" # 184 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" typedef uint64_t haddr_t; # 286 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" typedef enum { H5_ITER_UNKNOWN = -1, H5_ITER_INC, H5_ITER_DEC, H5_ITER_NATIVE, H5_ITER_N } H5_iter_order_t; # 307 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5public.h" typedef enum H5_index_t { H5_INDEX_UNKNOWN = -1, H5_INDEX_NAME, H5_INDEX_CRT_ORDER, H5_INDEX_N } H5_index_t; typedef struct H5_ih_info_t { hsize_t index_size; hsize_t heap_size; } H5_ih_info_t; __attribute__ ((visibility("default"))) herr_t H5open(void); __attribute__ ((visibility("default"))) herr_t H5close(void); __attribute__ ((visibility("default"))) herr_t H5dont_atexit(void); __attribute__ ((visibility("default"))) herr_t H5garbage_collect(void); __attribute__ ((visibility("default"))) herr_t H5set_free_list_limits (int reg_global_lim, int reg_list_lim, int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim); __attribute__ ((visibility("default"))) herr_t H5get_libversion(unsigned *majnum, unsigned *minnum, unsigned *relnum); __attribute__ ((visibility("default"))) herr_t H5check_version(unsigned majnum, unsigned minnum, unsigned relnum); __attribute__ ((visibility("default"))) herr_t H5free_memory(void *mem); __attribute__ ((visibility("default"))) void *H5allocate_memory(size_t size, hbool_t clear); __attribute__ ((visibility("default"))) void *H5resize_memory(void *mem, size_t size); # 25 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Apublic.h" 1 # 23 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Apublic.h" # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ipublic.h" 1 # 36 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ipublic.h" typedef enum H5I_type_t { H5I_UNINIT = (-2), H5I_BADID = (-1), H5I_FILE = 1, H5I_GROUP, H5I_DATATYPE, H5I_DATASPACE, H5I_DATASET, H5I_ATTR, H5I_REFERENCE, H5I_VFL, H5I_GENPROP_CLS, H5I_GENPROP_LST, H5I_ERROR_CLASS, H5I_ERROR_MSG, H5I_ERROR_STACK, H5I_NTYPES } H5I_type_t; typedef int hid_t; # 69 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ipublic.h" typedef herr_t (*H5I_free_t)(void*); typedef int (*H5I_search_func_t)(void *obj, hid_t id, void *key); __attribute__ ((visibility("default"))) hid_t H5Iregister(H5I_type_t type, const void *object); __attribute__ ((visibility("default"))) void *H5Iobject_verify(hid_t id, H5I_type_t id_type); __attribute__ ((visibility("default"))) void *H5Iremove_verify(hid_t id, H5I_type_t id_type); __attribute__ ((visibility("default"))) H5I_type_t H5Iget_type(hid_t id); __attribute__ ((visibility("default"))) hid_t H5Iget_file_id(hid_t id); __attribute__ ((visibility("default"))) ssize_t H5Iget_name(hid_t id, char *name , size_t size); __attribute__ ((visibility("default"))) int H5Iinc_ref(hid_t id); __attribute__ ((visibility("default"))) int H5Idec_ref(hid_t id); __attribute__ ((visibility("default"))) int H5Iget_ref(hid_t id); __attribute__ ((visibility("default"))) H5I_type_t H5Iregister_type(size_t hash_size, unsigned reserved, H5I_free_t free_func); __attribute__ ((visibility("default"))) herr_t H5Iclear_type(H5I_type_t type, hbool_t force); __attribute__ ((visibility("default"))) herr_t H5Idestroy_type(H5I_type_t type); __attribute__ ((visibility("default"))) int H5Iinc_type_ref(H5I_type_t type); __attribute__ ((visibility("default"))) int H5Idec_type_ref(H5I_type_t type); __attribute__ ((visibility("default"))) int H5Iget_type_ref(H5I_type_t type); __attribute__ ((visibility("default"))) void *H5Isearch(H5I_type_t type, H5I_search_func_t func, void *key); __attribute__ ((visibility("default"))) herr_t H5Inmembers(H5I_type_t type, hsize_t *num_members); __attribute__ ((visibility("default"))) htri_t H5Itype_exists(H5I_type_t type); __attribute__ ((visibility("default"))) htri_t H5Iis_valid(hid_t id); # 24 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Apublic.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Opublic.h" 1 # 33 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Opublic.h" # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Lpublic.h" 1 # 32 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Lpublic.h" # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" 1 # 30 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" typedef enum H5T_class_t { H5T_NO_CLASS = -1, H5T_INTEGER = 0, H5T_FLOAT = 1, H5T_TIME = 2, H5T_STRING = 3, H5T_BITFIELD = 4, H5T_OPAQUE = 5, H5T_COMPOUND = 6, H5T_REFERENCE = 7, H5T_ENUM = 8, H5T_VLEN = 9, H5T_ARRAY = 10, H5T_NCLASSES } H5T_class_t; typedef enum H5T_order_t { H5T_ORDER_ERROR = -1, H5T_ORDER_LE = 0, H5T_ORDER_BE = 1, H5T_ORDER_VAX = 2, H5T_ORDER_MIXED = 3, H5T_ORDER_NONE = 4 } H5T_order_t; typedef enum H5T_sign_t { H5T_SGN_ERROR = -1, H5T_SGN_NONE = 0, H5T_SGN_2 = 1, H5T_NSGN = 2 } H5T_sign_t; typedef enum H5T_norm_t { H5T_NORM_ERROR = -1, H5T_NORM_IMPLIED = 0, H5T_NORM_MSBSET = 1, H5T_NORM_NONE = 2 } H5T_norm_t; typedef enum H5T_cset_t { H5T_CSET_ERROR = -1, H5T_CSET_ASCII = 0, H5T_CSET_UTF8 = 1, H5T_CSET_RESERVED_2 = 2, H5T_CSET_RESERVED_3 = 3, H5T_CSET_RESERVED_4 = 4, H5T_CSET_RESERVED_5 = 5, H5T_CSET_RESERVED_6 = 6, H5T_CSET_RESERVED_7 = 7, H5T_CSET_RESERVED_8 = 8, H5T_CSET_RESERVED_9 = 9, H5T_CSET_RESERVED_10 = 10, H5T_CSET_RESERVED_11 = 11, H5T_CSET_RESERVED_12 = 12, H5T_CSET_RESERVED_13 = 13, H5T_CSET_RESERVED_14 = 14, H5T_CSET_RESERVED_15 = 15 } H5T_cset_t; typedef enum H5T_str_t { H5T_STR_ERROR = -1, H5T_STR_NULLTERM = 0, H5T_STR_NULLPAD = 1, H5T_STR_SPACEPAD = 2, H5T_STR_RESERVED_3 = 3, H5T_STR_RESERVED_4 = 4, H5T_STR_RESERVED_5 = 5, H5T_STR_RESERVED_6 = 6, H5T_STR_RESERVED_7 = 7, H5T_STR_RESERVED_8 = 8, H5T_STR_RESERVED_9 = 9, H5T_STR_RESERVED_10 = 10, H5T_STR_RESERVED_11 = 11, H5T_STR_RESERVED_12 = 12, H5T_STR_RESERVED_13 = 13, H5T_STR_RESERVED_14 = 14, H5T_STR_RESERVED_15 = 15 } H5T_str_t; typedef enum H5T_pad_t { H5T_PAD_ERROR = -1, H5T_PAD_ZERO = 0, H5T_PAD_ONE = 1, H5T_PAD_BACKGROUND = 2, H5T_NPAD = 3 } H5T_pad_t; typedef enum H5T_cmd_t { H5T_CONV_INIT = 0, H5T_CONV_CONV = 1, H5T_CONV_FREE = 2 } H5T_cmd_t; typedef enum H5T_bkg_t { H5T_BKG_NO = 0, H5T_BKG_TEMP = 1, H5T_BKG_YES = 2 } H5T_bkg_t; typedef struct H5T_cdata_t { H5T_cmd_t command; H5T_bkg_t need_bkg; hbool_t recalc; void *priv; } H5T_cdata_t; typedef enum H5T_pers_t { H5T_PERS_DONTCARE = -1, H5T_PERS_HARD = 0, H5T_PERS_SOFT = 1 } H5T_pers_t; typedef enum H5T_direction_t { H5T_DIR_DEFAULT = 0, H5T_DIR_ASCEND = 1, H5T_DIR_DESCEND = 2 } H5T_direction_t; typedef enum H5T_conv_except_t { H5T_CONV_EXCEPT_RANGE_HI = 0, H5T_CONV_EXCEPT_RANGE_LOW = 1, H5T_CONV_EXCEPT_PRECISION = 2, H5T_CONV_EXCEPT_TRUNCATE = 3, H5T_CONV_EXCEPT_PINF = 4, H5T_CONV_EXCEPT_NINF = 5, H5T_CONV_EXCEPT_NAN = 6 } H5T_conv_except_t; typedef enum H5T_conv_ret_t { H5T_CONV_ABORT = -1, H5T_CONV_UNHANDLED = 0, H5T_CONV_HANDLED = 1 } H5T_conv_ret_t; typedef struct { size_t len; void *p; } hvl_t; # 209 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" typedef herr_t (*H5T_conv_t) (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, size_t bkg_stride, void *buf, void *bkg, hid_t dset_xfer_plist); typedef H5T_conv_ret_t (*H5T_conv_except_func_t)(H5T_conv_except_t except_type, hid_t src_id, hid_t dst_id, void *src_buf, void *dst_buf, void *user_data); # 234 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" extern __attribute__ ((visibility("default"))) hid_t H5T_IEEE_F32BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_IEEE_F32LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_IEEE_F64BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_IEEE_F64LE_g; # 269 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" extern __attribute__ ((visibility("default"))) hid_t H5T_STD_I8BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_I8LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_I16BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_I16LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_I32BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_I32LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_I64BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_I64LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_U8BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_U8LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_U16BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_U16LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_U32BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_U32LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_U64BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_U64LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_B8BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_B8LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_B16BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_B16LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_B32BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_B32LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_B64BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_B64LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_REF_OBJ_g; extern __attribute__ ((visibility("default"))) hid_t H5T_STD_REF_DSETREG_g; # 303 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" extern __attribute__ ((visibility("default"))) hid_t H5T_UNIX_D32BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_UNIX_D32LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_UNIX_D64BE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_UNIX_D64LE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_C_S1_g; extern __attribute__ ((visibility("default"))) hid_t H5T_FORTRAN_S1_g; # 383 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" extern __attribute__ ((visibility("default"))) hid_t H5T_VAX_F32_g; extern __attribute__ ((visibility("default"))) hid_t H5T_VAX_F64_g; # 421 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_SCHAR_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UCHAR_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_SHORT_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_USHORT_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_LONG_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_ULONG_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_LLONG_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_ULLONG_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_FLOAT_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_DOUBLE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_LDOUBLE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_B8_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_B16_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_B32_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_B64_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_OPAQUE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_HADDR_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_HSIZE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_HSSIZE_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_HERR_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_HBOOL_g; # 454 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT8_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT8_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_LEAST8_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_LEAST8_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_FAST8_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_FAST8_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT16_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT16_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_LEAST16_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_LEAST16_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_FAST16_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_FAST16_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT32_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT32_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_LEAST32_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_LEAST32_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_FAST32_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_FAST32_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT64_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT64_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_LEAST64_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_LEAST64_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_INT_FAST64_g; extern __attribute__ ((visibility("default"))) hid_t H5T_NATIVE_UINT_FAST64_g; __attribute__ ((visibility("default"))) hid_t H5Tcreate(H5T_class_t type, size_t size); __attribute__ ((visibility("default"))) hid_t H5Tcopy(hid_t type_id); __attribute__ ((visibility("default"))) herr_t H5Tclose(hid_t type_id); __attribute__ ((visibility("default"))) htri_t H5Tequal(hid_t type1_id, hid_t type2_id); __attribute__ ((visibility("default"))) herr_t H5Tlock(hid_t type_id); __attribute__ ((visibility("default"))) herr_t H5Tcommit2(hid_t loc_id, const char *name, hid_t type_id, hid_t lcpl_id, hid_t tcpl_id, hid_t tapl_id); __attribute__ ((visibility("default"))) hid_t H5Topen2(hid_t loc_id, const char *name, hid_t tapl_id); __attribute__ ((visibility("default"))) herr_t H5Tcommit_anon(hid_t loc_id, hid_t type_id, hid_t tcpl_id, hid_t tapl_id); __attribute__ ((visibility("default"))) hid_t H5Tget_create_plist(hid_t type_id); __attribute__ ((visibility("default"))) htri_t H5Tcommitted(hid_t type_id); __attribute__ ((visibility("default"))) herr_t H5Tencode(hid_t obj_id, void *buf, size_t *nalloc); __attribute__ ((visibility("default"))) hid_t H5Tdecode(const void *buf); __attribute__ ((visibility("default"))) herr_t H5Tinsert(hid_t parent_id, const char *name, size_t offset, hid_t member_id); __attribute__ ((visibility("default"))) herr_t H5Tpack(hid_t type_id); __attribute__ ((visibility("default"))) hid_t H5Tenum_create(hid_t base_id); __attribute__ ((visibility("default"))) herr_t H5Tenum_insert(hid_t type, const char *name, const void *value); __attribute__ ((visibility("default"))) herr_t H5Tenum_nameof(hid_t type, const void *value, char *name , size_t size); __attribute__ ((visibility("default"))) herr_t H5Tenum_valueof(hid_t type, const char *name, void *value ); __attribute__ ((visibility("default"))) hid_t H5Tvlen_create(hid_t base_id); __attribute__ ((visibility("default"))) hid_t H5Tarray_create2(hid_t base_id, unsigned ndims, const hsize_t dim[ ]); __attribute__ ((visibility("default"))) int H5Tget_array_ndims(hid_t type_id); __attribute__ ((visibility("default"))) int H5Tget_array_dims2(hid_t type_id, hsize_t dims[]); __attribute__ ((visibility("default"))) herr_t H5Tset_tag(hid_t type, const char *tag); __attribute__ ((visibility("default"))) char *H5Tget_tag(hid_t type); __attribute__ ((visibility("default"))) hid_t H5Tget_super(hid_t type); __attribute__ ((visibility("default"))) H5T_class_t H5Tget_class(hid_t type_id); __attribute__ ((visibility("default"))) htri_t H5Tdetect_class(hid_t type_id, H5T_class_t cls); __attribute__ ((visibility("default"))) size_t H5Tget_size(hid_t type_id); __attribute__ ((visibility("default"))) H5T_order_t H5Tget_order(hid_t type_id); __attribute__ ((visibility("default"))) size_t H5Tget_precision(hid_t type_id); __attribute__ ((visibility("default"))) int H5Tget_offset(hid_t type_id); __attribute__ ((visibility("default"))) herr_t H5Tget_pad(hid_t type_id, H5T_pad_t *lsb , H5T_pad_t *msb ); __attribute__ ((visibility("default"))) H5T_sign_t H5Tget_sign(hid_t type_id); __attribute__ ((visibility("default"))) herr_t H5Tget_fields(hid_t type_id, size_t *spos , size_t *epos , size_t *esize , size_t *mpos , size_t *msize ); __attribute__ ((visibility("default"))) size_t H5Tget_ebias(hid_t type_id); __attribute__ ((visibility("default"))) H5T_norm_t H5Tget_norm(hid_t type_id); __attribute__ ((visibility("default"))) H5T_pad_t H5Tget_inpad(hid_t type_id); __attribute__ ((visibility("default"))) H5T_str_t H5Tget_strpad(hid_t type_id); __attribute__ ((visibility("default"))) int H5Tget_nmembers(hid_t type_id); __attribute__ ((visibility("default"))) char *H5Tget_member_name(hid_t type_id, unsigned membno); __attribute__ ((visibility("default"))) int H5Tget_member_index(hid_t type_id, const char *name); __attribute__ ((visibility("default"))) size_t H5Tget_member_offset(hid_t type_id, unsigned membno); __attribute__ ((visibility("default"))) H5T_class_t H5Tget_member_class(hid_t type_id, unsigned membno); __attribute__ ((visibility("default"))) hid_t H5Tget_member_type(hid_t type_id, unsigned membno); __attribute__ ((visibility("default"))) herr_t H5Tget_member_value(hid_t type_id, unsigned membno, void *value ); __attribute__ ((visibility("default"))) H5T_cset_t H5Tget_cset(hid_t type_id); __attribute__ ((visibility("default"))) htri_t H5Tis_variable_str(hid_t type_id); __attribute__ ((visibility("default"))) hid_t H5Tget_native_type(hid_t type_id, H5T_direction_t direction); __attribute__ ((visibility("default"))) herr_t H5Tset_size(hid_t type_id, size_t size); __attribute__ ((visibility("default"))) herr_t H5Tset_order(hid_t type_id, H5T_order_t order); __attribute__ ((visibility("default"))) herr_t H5Tset_precision(hid_t type_id, size_t prec); __attribute__ ((visibility("default"))) herr_t H5Tset_offset(hid_t type_id, size_t offset); __attribute__ ((visibility("default"))) herr_t H5Tset_pad(hid_t type_id, H5T_pad_t lsb, H5T_pad_t msb); __attribute__ ((visibility("default"))) herr_t H5Tset_sign(hid_t type_id, H5T_sign_t sign); __attribute__ ((visibility("default"))) herr_t H5Tset_fields(hid_t type_id, size_t spos, size_t epos, size_t esize, size_t mpos, size_t msize); __attribute__ ((visibility("default"))) herr_t H5Tset_ebias(hid_t type_id, size_t ebias); __attribute__ ((visibility("default"))) herr_t H5Tset_norm(hid_t type_id, H5T_norm_t norm); __attribute__ ((visibility("default"))) herr_t H5Tset_inpad(hid_t type_id, H5T_pad_t pad); __attribute__ ((visibility("default"))) herr_t H5Tset_cset(hid_t type_id, H5T_cset_t cset); __attribute__ ((visibility("default"))) herr_t H5Tset_strpad(hid_t type_id, H5T_str_t strpad); __attribute__ ((visibility("default"))) herr_t H5Tregister(H5T_pers_t pers, const char *name, hid_t src_id, hid_t dst_id, H5T_conv_t func); __attribute__ ((visibility("default"))) herr_t H5Tunregister(H5T_pers_t pers, const char *name, hid_t src_id, hid_t dst_id, H5T_conv_t func); __attribute__ ((visibility("default"))) H5T_conv_t H5Tfind(hid_t src_id, hid_t dst_id, H5T_cdata_t **pcdata); __attribute__ ((visibility("default"))) htri_t H5Tcompiler_conv(hid_t src_id, hid_t dst_id); __attribute__ ((visibility("default"))) herr_t H5Tconvert(hid_t src_id, hid_t dst_id, size_t nelmts, void *buf, void *background, hid_t plist_id); # 608 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Tpublic.h" __attribute__ ((visibility("default"))) herr_t H5Tcommit1(hid_t loc_id, const char *name, hid_t type_id); __attribute__ ((visibility("default"))) hid_t H5Topen1(hid_t loc_id, const char *name); __attribute__ ((visibility("default"))) hid_t H5Tarray_create1(hid_t base_id, int ndims, const hsize_t dim[ ], const int perm[ ]); __attribute__ ((visibility("default"))) int H5Tget_array_dims1(hid_t type_id, hsize_t dims[], int perm[]); # 33 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Lpublic.h" 2 # 64 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Lpublic.h" typedef enum { H5L_TYPE_ERROR = (-1), H5L_TYPE_HARD = 0, H5L_TYPE_SOFT = 1, H5L_TYPE_EXTERNAL = 64, H5L_TYPE_MAX = 255 } H5L_type_t; typedef struct { H5L_type_t type; hbool_t corder_valid; int64_t corder; H5T_cset_t cset; union { haddr_t address; size_t val_size; } u; } H5L_info_t; typedef herr_t (*H5L_create_func_t)(const char *link_name, hid_t loc_group, const void *lnkdata, size_t lnkdata_size, hid_t lcpl_id); typedef herr_t (*H5L_move_func_t)(const char *new_name, hid_t new_loc, const void *lnkdata, size_t lnkdata_size); typedef herr_t (*H5L_copy_func_t)(const char *new_name, hid_t new_loc, const void *lnkdata, size_t lnkdata_size); typedef hid_t (*H5L_traverse_func_t)(const char *link_name, hid_t cur_group, const void *lnkdata, size_t lnkdata_size, hid_t lapl_id); typedef herr_t (*H5L_delete_func_t)(const char *link_name, hid_t file, const void *lnkdata, size_t lnkdata_size); typedef ssize_t (*H5L_query_func_t)(const char *link_name, const void *lnkdata, size_t lnkdata_size, void *buf , size_t buf_size); typedef struct { int version; H5L_type_t id; const char *comment; H5L_create_func_t create_func; H5L_move_func_t move_func; H5L_copy_func_t copy_func; H5L_traverse_func_t trav_func; H5L_delete_func_t del_func; H5L_query_func_t query_func; } H5L_class_t; typedef herr_t (*H5L_iterate_t)(hid_t group, const char *name, const H5L_info_t *info, void *op_data); typedef herr_t (*H5L_elink_traverse_t)(const char *parent_file_name, const char *parent_group_name, const char *child_file_name, const char *child_object_name, unsigned *acc_flags, hid_t fapl_id, void *op_data); # 148 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Lpublic.h" __attribute__ ((visibility("default"))) herr_t H5Lmove(hid_t src_loc, const char *src_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lcopy(hid_t src_loc, const char *src_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lcreate_hard(hid_t cur_loc, const char *cur_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lcreate_soft(const char *link_target, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Ldelete(hid_t loc_id, const char *name, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Ldelete_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lget_val(hid_t loc_id, const char *name, void *buf , size_t size, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lget_val_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, void *buf , size_t size, hid_t lapl_id); __attribute__ ((visibility("default"))) htri_t H5Lexists(hid_t loc_id, const char *name, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lget_info(hid_t loc_id, const char *name, H5L_info_t *linfo , hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5L_info_t *linfo , hid_t lapl_id); __attribute__ ((visibility("default"))) ssize_t H5Lget_name_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name , size_t size, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Literate(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data); __attribute__ ((visibility("default"))) herr_t H5Literate_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lvisit(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, void *op_data); __attribute__ ((visibility("default"))) herr_t H5Lvisit_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, void *op_data, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lcreate_ud(hid_t link_loc_id, const char *link_name, H5L_type_t link_type, const void *udata, size_t udata_size, hid_t lcpl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Lregister(const H5L_class_t *cls); __attribute__ ((visibility("default"))) herr_t H5Lunregister(H5L_type_t id); __attribute__ ((visibility("default"))) htri_t H5Lis_registered(H5L_type_t id); __attribute__ ((visibility("default"))) herr_t H5Lunpack_elink_val(const void *ext_linkval , size_t link_size, unsigned *flags, const char **filename , const char **obj_path ); __attribute__ ((visibility("default"))) herr_t H5Lcreate_external(const char *file_name, const char *obj_name, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id); # 34 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Opublic.h" 2 # 83 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Opublic.h" typedef enum H5O_type_t { H5O_TYPE_UNKNOWN = -1, H5O_TYPE_GROUP, H5O_TYPE_DATASET, H5O_TYPE_NAMED_DATATYPE, H5O_TYPE_NTYPES } H5O_type_t; typedef struct H5O_hdr_info_t { unsigned version; unsigned nmesgs; unsigned nchunks; unsigned flags; struct { hsize_t total; hsize_t meta; hsize_t mesg; hsize_t free; } space; struct { uint64_t present; uint64_t shared; } mesg; } H5O_hdr_info_t; typedef struct H5O_info_t { unsigned long fileno; haddr_t addr; H5O_type_t type; unsigned rc; time_t atime; time_t mtime; time_t ctime; time_t btime; hsize_t num_attrs; H5O_hdr_info_t hdr; struct { H5_ih_info_t obj; H5_ih_info_t attr; } meta_size; } H5O_info_t; typedef uint32_t H5O_msg_crt_idx_t; typedef herr_t (*H5O_iterate_t)(hid_t obj, const char *name, const H5O_info_t *info, void *op_data); typedef enum H5O_mcdt_search_ret_t { H5O_MCDT_SEARCH_ERROR = -1, H5O_MCDT_SEARCH_CONT, H5O_MCDT_SEARCH_STOP } H5O_mcdt_search_ret_t; typedef H5O_mcdt_search_ret_t (*H5O_mcdt_search_cb_t)(void *op_data); # 156 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Opublic.h" __attribute__ ((visibility("default"))) hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id); __attribute__ ((visibility("default"))) hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr); __attribute__ ((visibility("default"))) hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); __attribute__ ((visibility("default"))) htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Oget_info(hid_t loc_id, H5O_info_t *oinfo); __attribute__ ((visibility("default"))) herr_t H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Oget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Oincr_refcount(hid_t object_id); __attribute__ ((visibility("default"))) herr_t H5Odecr_refcount(hid_t object_id); __attribute__ ((visibility("default"))) herr_t H5Ocopy(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name, hid_t ocpypl_id, hid_t lcpl_id); __attribute__ ((visibility("default"))) herr_t H5Oset_comment(hid_t obj_id, const char *comment); __attribute__ ((visibility("default"))) herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name, const char *comment, hid_t lapl_id); __attribute__ ((visibility("default"))) ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize); __attribute__ ((visibility("default"))) ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name, char *comment, size_t bufsize, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, void *op_data); __attribute__ ((visibility("default"))) herr_t H5Ovisit_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, void *op_data, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Oclose(hid_t object_id); # 197 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Opublic.h" typedef struct H5O_stat_t { hsize_t size; hsize_t free; unsigned nmesgs; unsigned nchunks; } H5O_stat_t; # 25 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Apublic.h" 2 typedef struct { hbool_t corder_valid; H5O_msg_crt_idx_t corder; H5T_cset_t cset; hsize_t data_size; } H5A_info_t; typedef herr_t (*H5A_operator2_t)(hid_t location_id , const char *attr_name , const H5A_info_t *ainfo , void *op_data ); __attribute__ ((visibility("default"))) hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id); __attribute__ ((visibility("default"))) hid_t H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) hid_t H5Aopen(hid_t obj_id, const char *attr_name, hid_t aapl_id); __attribute__ ((visibility("default"))) hid_t H5Aopen_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t aapl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) hid_t H5Aopen_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t aapl_id, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Awrite(hid_t attr_id, hid_t type_id, const void *buf); __attribute__ ((visibility("default"))) herr_t H5Aread(hid_t attr_id, hid_t type_id, void *buf); __attribute__ ((visibility("default"))) herr_t H5Aclose(hid_t attr_id); __attribute__ ((visibility("default"))) hid_t H5Aget_space(hid_t attr_id); __attribute__ ((visibility("default"))) hid_t H5Aget_type(hid_t attr_id); __attribute__ ((visibility("default"))) hid_t H5Aget_create_plist(hid_t attr_id); __attribute__ ((visibility("default"))) ssize_t H5Aget_name(hid_t attr_id, size_t buf_size, char *buf); __attribute__ ((visibility("default"))) ssize_t H5Aget_name_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name , size_t size, hid_t lapl_id); __attribute__ ((visibility("default"))) hsize_t H5Aget_storage_size(hid_t attr_id); __attribute__ ((visibility("default"))) herr_t H5Aget_info(hid_t attr_id, H5A_info_t *ainfo ); __attribute__ ((visibility("default"))) herr_t H5Aget_info_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, H5A_info_t *ainfo , hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Aget_info_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5A_info_t *ainfo , hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Arename(hid_t loc_id, const char *old_name, const char *new_name); __attribute__ ((visibility("default"))) herr_t H5Arename_by_name(hid_t loc_id, const char *obj_name, const char *old_attr_name, const char *new_attr_name, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Aiterate2(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data); __attribute__ ((visibility("default"))) herr_t H5Aiterate_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data, hid_t lapd_id); __attribute__ ((visibility("default"))) herr_t H5Adelete(hid_t loc_id, const char *name); __attribute__ ((visibility("default"))) herr_t H5Adelete_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Adelete_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); __attribute__ ((visibility("default"))) htri_t H5Aexists(hid_t obj_id, const char *attr_name); __attribute__ ((visibility("default"))) htri_t H5Aexists_by_name(hid_t obj_id, const char *obj_name, const char *attr_name, hid_t lapl_id); # 100 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Apublic.h" typedef herr_t (*H5A_operator1_t)(hid_t location_id , const char *attr_name , void *operator_data ); __attribute__ ((visibility("default"))) hid_t H5Acreate1(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t acpl_id); __attribute__ ((visibility("default"))) hid_t H5Aopen_name(hid_t loc_id, const char *name); __attribute__ ((visibility("default"))) hid_t H5Aopen_idx(hid_t loc_id, unsigned idx); __attribute__ ((visibility("default"))) int H5Aget_num_attrs(hid_t loc_id); __attribute__ ((visibility("default"))) herr_t H5Aiterate1(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, void *op_data); # 26 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5ACpublic.h" 1 # 33 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5ACpublic.h" # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Cpublic.h" 1 # 38 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Cpublic.h" enum H5C_cache_incr_mode { H5C_incr__off, H5C_incr__threshold }; enum H5C_cache_flash_incr_mode { H5C_flash_incr__off, H5C_flash_incr__add_space }; enum H5C_cache_decr_mode { H5C_decr__off, H5C_decr__threshold, H5C_decr__age_out, H5C_decr__age_out_with_threshold }; # 34 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5ACpublic.h" 2 # 443 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5ACpublic.h" typedef struct H5AC_cache_config_t { int version; hbool_t rpt_fcn_enabled; hbool_t open_trace_file; hbool_t close_trace_file; char trace_file_name[1024 + 1]; hbool_t evictions_enabled; hbool_t set_initial_size; size_t initial_size; double min_clean_fraction; size_t max_size; size_t min_size; long int epoch_length; enum H5C_cache_incr_mode incr_mode; double lower_hr_threshold; double increment; hbool_t apply_max_increment; size_t max_increment; enum H5C_cache_flash_incr_mode flash_incr_mode; double flash_multiple; double flash_threshold; enum H5C_cache_decr_mode decr_mode; double upper_hr_threshold; double decrement; hbool_t apply_max_decrement; size_t max_decrement; int epochs_before_eviction; hbool_t apply_empty_reserve; double empty_reserve; int dirty_bytes_threshold; int metadata_write_strategy; } H5AC_cache_config_t; # 27 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Dpublic.h" 1 # 48 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Dpublic.h" typedef enum H5D_layout_t { H5D_LAYOUT_ERROR = -1, H5D_COMPACT = 0, H5D_CONTIGUOUS = 1, H5D_CHUNKED = 2, H5D_NLAYOUTS = 3 } H5D_layout_t; typedef enum H5D_chunk_index_t { H5D_CHUNK_BTREE = 0 } H5D_chunk_index_t; typedef enum H5D_alloc_time_t { H5D_ALLOC_TIME_ERROR = -1, H5D_ALLOC_TIME_DEFAULT = 0, H5D_ALLOC_TIME_EARLY = 1, H5D_ALLOC_TIME_LATE = 2, H5D_ALLOC_TIME_INCR = 3 } H5D_alloc_time_t; typedef enum H5D_space_status_t { H5D_SPACE_STATUS_ERROR = -1, H5D_SPACE_STATUS_NOT_ALLOCATED = 0, H5D_SPACE_STATUS_PART_ALLOCATED = 1, H5D_SPACE_STATUS_ALLOCATED = 2 } H5D_space_status_t; typedef enum H5D_fill_time_t { H5D_FILL_TIME_ERROR = -1, H5D_FILL_TIME_ALLOC = 0, H5D_FILL_TIME_NEVER = 1, H5D_FILL_TIME_IFSET = 2 } H5D_fill_time_t; typedef enum H5D_fill_value_t { H5D_FILL_VALUE_ERROR =-1, H5D_FILL_VALUE_UNDEFINED =0, H5D_FILL_VALUE_DEFAULT =1, H5D_FILL_VALUE_USER_DEFINED =2 } H5D_fill_value_t; # 107 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Dpublic.h" typedef herr_t (*H5D_operator_t)(void *elem, hid_t type_id, unsigned ndim, const hsize_t *point, void *operator_data); typedef herr_t (*H5D_scatter_func_t)(const void **src_buf , size_t *src_buf_bytes_used , void *op_data); typedef herr_t (*H5D_gather_func_t)(const void *dst_buf, size_t dst_buf_bytes_used, void *op_data); __attribute__ ((visibility("default"))) hid_t H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id); __attribute__ ((visibility("default"))) hid_t H5Dcreate_anon(hid_t file_id, hid_t type_id, hid_t space_id, hid_t plist_id, hid_t dapl_id); __attribute__ ((visibility("default"))) hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id); __attribute__ ((visibility("default"))) herr_t H5Dclose(hid_t dset_id); __attribute__ ((visibility("default"))) hid_t H5Dget_space(hid_t dset_id); __attribute__ ((visibility("default"))) herr_t H5Dget_space_status(hid_t dset_id, H5D_space_status_t *allocation); __attribute__ ((visibility("default"))) hid_t H5Dget_type(hid_t dset_id); __attribute__ ((visibility("default"))) hid_t H5Dget_create_plist(hid_t dset_id); __attribute__ ((visibility("default"))) hid_t H5Dget_access_plist(hid_t dset_id); __attribute__ ((visibility("default"))) hsize_t H5Dget_storage_size(hid_t dset_id); __attribute__ ((visibility("default"))) haddr_t H5Dget_offset(hid_t dset_id); __attribute__ ((visibility("default"))) herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, void *buf ); __attribute__ ((visibility("default"))) herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, const void *buf); __attribute__ ((visibility("default"))) herr_t H5Diterate(void *buf, hid_t type_id, hid_t space_id, H5D_operator_t op, void *operator_data); __attribute__ ((visibility("default"))) herr_t H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t plist_id, void *buf); __attribute__ ((visibility("default"))) herr_t H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id, hsize_t *size); __attribute__ ((visibility("default"))) herr_t H5Dfill(const void *fill, hid_t fill_type, void *buf, hid_t buf_type, hid_t space); __attribute__ ((visibility("default"))) herr_t H5Dset_extent(hid_t dset_id, const hsize_t size[]); __attribute__ ((visibility("default"))) herr_t H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id, hid_t dst_space_id, void *dst_buf); __attribute__ ((visibility("default"))) herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id, size_t dst_buf_size, void *dst_buf, H5D_gather_func_t op, void *op_data); __attribute__ ((visibility("default"))) herr_t H5Ddebug(hid_t dset_id); # 162 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Dpublic.h" __attribute__ ((visibility("default"))) hid_t H5Dcreate1(hid_t file_id, const char *name, hid_t type_id, hid_t space_id, hid_t dcpl_id); __attribute__ ((visibility("default"))) hid_t H5Dopen1(hid_t file_id, const char *name); __attribute__ ((visibility("default"))) herr_t H5Dextend(hid_t dset_id, const hsize_t size[]); # 28 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epublic.h" 1 # 22 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epublic.h" # 1 "/usr/include/stdio.h" 1 3 4 # 30 "/usr/include/stdio.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 35 "/usr/include/stdio.h" 2 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 75 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 32 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 83 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 53 "/usr/include/_G_config.h" 3 4 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 33 "/usr/include/libio.h" 2 3 4 # 53 "/usr/include/libio.h" 3 4 # 1 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdarg.h" 1 3 4 # 40 "/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 54 "/usr/include/libio.h" 2 3 4 # 170 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 271 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 4 __off64_t _offset; # 328 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 364 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 416 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 460 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__)); # 490 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__)); # 76 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 109 "/usr/include/stdio.h" 3 4 typedef _G_fpos_t fpos_t; # 161 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 162 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) __attribute__ ((__nothrow__)); extern int rename (__const char *__old, __const char *__new) __attribute__ ((__nothrow__)); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) __attribute__ ((__nothrow__)); extern FILE *tmpfile (void) ; # 208 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__)) ; # 226 "/usr/include/stdio.h" 3 4 extern char *tempnam (__const char *__dir, __const char *__pfx) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 251 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 265 "/usr/include/stdio.h" 3 4 extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 4 # 305 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, __const char *__modes) __attribute__ ((__nothrow__)) ; # 318 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) __attribute__ ((__nothrow__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__)); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 416 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); # 447 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (__const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__)); # 467 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 498 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 526 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 554 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 565 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 598 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; # 660 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; # 732 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 768 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 787 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 4 # 819 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 4 # 27 "/usr/include/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern __const char *__const sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; # 868 "/usr/include/stdio.h" 3 4 extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__)); # 908 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__)); # 938 "/usr/include/stdio.h" 3 4 # 23 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epublic.h" 2 # 32 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epublic.h" typedef enum H5E_type_t { H5E_MAJOR, H5E_MINOR } H5E_type_t; typedef struct H5E_error2_t { hid_t cls_id; hid_t maj_num; hid_t min_num; unsigned line; const char *func_name; const char *file_name; const char *desc; } H5E_error2_t; # 58 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epublic.h" extern __attribute__ ((visibility("default"))) hid_t H5E_ERR_CLS_g; # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" 1 # 58 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_DATASET_g; extern __attribute__ ((visibility("default"))) hid_t H5E_FUNC_g; extern __attribute__ ((visibility("default"))) hid_t H5E_STORAGE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_FILE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_SOHM_g; extern __attribute__ ((visibility("default"))) hid_t H5E_SYM_g; extern __attribute__ ((visibility("default"))) hid_t H5E_PLUGIN_g; extern __attribute__ ((visibility("default"))) hid_t H5E_VFL_g; extern __attribute__ ((visibility("default"))) hid_t H5E_INTERNAL_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BTREE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_REFERENCE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_DATASPACE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_RESOURCE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_PLIST_g; extern __attribute__ ((visibility("default"))) hid_t H5E_LINK_g; extern __attribute__ ((visibility("default"))) hid_t H5E_DATATYPE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_RS_g; extern __attribute__ ((visibility("default"))) hid_t H5E_HEAP_g; extern __attribute__ ((visibility("default"))) hid_t H5E_OHDR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_ATOM_g; extern __attribute__ ((visibility("default"))) hid_t H5E_ATTR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_NONE_MAJOR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_IO_g; extern __attribute__ ((visibility("default"))) hid_t H5E_SLIST_g; extern __attribute__ ((visibility("default"))) hid_t H5E_EFL_g; extern __attribute__ ((visibility("default"))) hid_t H5E_TST_g; extern __attribute__ ((visibility("default"))) hid_t H5E_ARGS_g; extern __attribute__ ((visibility("default"))) hid_t H5E_ERROR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_PLINE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_FSPACE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CACHE_g; # 101 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_SEEKERROR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_READERROR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_WRITEERROR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CLOSEERROR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_OVERFLOW_g; extern __attribute__ ((visibility("default"))) hid_t H5E_FCNTL_g; # 119 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_NOSPACE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTALLOC_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCOPY_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTFREE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_ALREADYEXISTS_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTLOCK_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTUNLOCK_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTGC_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTGETSIZE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_OBJOPEN_g; # 137 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_CANTRESTORE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCOMPUTE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTEXTEND_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTATTACH_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTUPDATE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTOPERATE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTINIT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_ALREADYINIT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTRELEASE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTGET_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTSET_g; extern __attribute__ ((visibility("default"))) hid_t H5E_DUPCLASS_g; extern __attribute__ ((visibility("default"))) hid_t H5E_SETDISALLOWED_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTMERGE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTREVIVE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTSHRINK_g; # 180 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_LINKCOUNT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_VERSION_g; extern __attribute__ ((visibility("default"))) hid_t H5E_ALIGNMENT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADMESG_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTDELETE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADITER_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTPACK_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTRESET_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTRENAME_g; extern __attribute__ ((visibility("default"))) hid_t H5E_SYSERRSTR_g; # 201 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_NOFILTER_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CALLBACK_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANAPPLY_g; extern __attribute__ ((visibility("default"))) hid_t H5E_SETLOCAL_g; extern __attribute__ ((visibility("default"))) hid_t H5E_NOENCODER_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTFILTER_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTOPENOBJ_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCLOSEOBJ_g; extern __attribute__ ((visibility("default"))) hid_t H5E_COMPLEN_g; extern __attribute__ ((visibility("default"))) hid_t H5E_PATH_g; extern __attribute__ ((visibility("default"))) hid_t H5E_NONE_MINOR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_OPENERROR_g; # 236 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_FILEEXISTS_g; extern __attribute__ ((visibility("default"))) hid_t H5E_FILEOPEN_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCREATE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTOPENFILE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCLOSEFILE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_NOTHDF5_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADFILE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_TRUNCATED_g; extern __attribute__ ((visibility("default"))) hid_t H5E_MOUNT_g; # 253 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_BADATOM_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADGROUP_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTREGISTER_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTINC_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTDEC_g; extern __attribute__ ((visibility("default"))) hid_t H5E_NOIDS_g; # 276 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_CANTFLUSH_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTSERIALIZE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTLOAD_g; extern __attribute__ ((visibility("default"))) hid_t H5E_PROTECT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_NOTCACHED_g; extern __attribute__ ((visibility("default"))) hid_t H5E_SYSTEM_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTINS_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTPROTECT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTUNPROTECT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTPIN_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTUNPIN_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTMARKDIRTY_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTDIRTY_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTEXPUNGE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTRESIZE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_TRAVERSE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_NLINKS_g; extern __attribute__ ((visibility("default"))) hid_t H5E_NOTREGISTERED_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTMOVE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTSORT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_MPI_g; extern __attribute__ ((visibility("default"))) hid_t H5E_MPIERRSTR_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTRECV_g; # 319 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCLIP_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCOUNT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTSELECT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTNEXT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADSELECT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCOMPARE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_UNINITIALIZED_g; extern __attribute__ ((visibility("default"))) hid_t H5E_UNSUPPORTED_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADTYPE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADRANGE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADVALUE_g; # 350 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epubgen.h" extern __attribute__ ((visibility("default"))) hid_t H5E_NOTFOUND_g; extern __attribute__ ((visibility("default"))) hid_t H5E_EXISTS_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTENCODE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTDECODE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTSPLIT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTREDISTRIBUTE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTSWAP_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTINSERT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTLIST_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTMODIFY_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTREMOVE_g; extern __attribute__ ((visibility("default"))) hid_t H5E_CANTCONVERT_g; extern __attribute__ ((visibility("default"))) hid_t H5E_BADSIZE_g; # 63 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epublic.h" 2 # 141 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epublic.h" typedef enum H5E_direction_t { H5E_WALK_UPWARD = 0, H5E_WALK_DOWNWARD = 1 } H5E_direction_t; typedef herr_t (*H5E_walk2_t)(unsigned n, const H5E_error2_t *err_desc, void *client_data); typedef herr_t (*H5E_auto2_t)(hid_t estack, void *client_data); __attribute__ ((visibility("default"))) hid_t H5Eregister_class(const char *cls_name, const char *lib_name, const char *version); __attribute__ ((visibility("default"))) herr_t H5Eunregister_class(hid_t class_id); __attribute__ ((visibility("default"))) herr_t H5Eclose_msg(hid_t err_id); __attribute__ ((visibility("default"))) hid_t H5Ecreate_msg(hid_t cls, H5E_type_t msg_type, const char *msg); __attribute__ ((visibility("default"))) hid_t H5Ecreate_stack(void); __attribute__ ((visibility("default"))) hid_t H5Eget_current_stack(void); __attribute__ ((visibility("default"))) herr_t H5Eclose_stack(hid_t stack_id); __attribute__ ((visibility("default"))) ssize_t H5Eget_class_name(hid_t class_id, char *name, size_t size); __attribute__ ((visibility("default"))) herr_t H5Eset_current_stack(hid_t err_stack_id); __attribute__ ((visibility("default"))) herr_t H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *msg, ...); __attribute__ ((visibility("default"))) herr_t H5Epop(hid_t err_stack, size_t count); __attribute__ ((visibility("default"))) herr_t H5Eprint2(hid_t err_stack, FILE *stream); __attribute__ ((visibility("default"))) herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func, void *client_data); __attribute__ ((visibility("default"))) herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data); __attribute__ ((visibility("default"))) herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); __attribute__ ((visibility("default"))) herr_t H5Eclear2(hid_t err_stack); __attribute__ ((visibility("default"))) herr_t H5Eauto_is_v2(hid_t err_stack, unsigned *is_stack); __attribute__ ((visibility("default"))) ssize_t H5Eget_msg(hid_t msg_id, H5E_type_t *type, char *msg, size_t size); __attribute__ ((visibility("default"))) ssize_t H5Eget_num(hid_t error_stack_id); # 193 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Epublic.h" typedef hid_t H5E_major_t; typedef hid_t H5E_minor_t; typedef struct H5E_error1_t { H5E_major_t maj_num; H5E_minor_t min_num; const char *func_name; const char *file_name; unsigned line; const char *desc; } H5E_error1_t; typedef herr_t (*H5E_walk1_t)(int n, H5E_error1_t *err_desc, void *client_data); typedef herr_t (*H5E_auto1_t)(void *client_data); __attribute__ ((visibility("default"))) herr_t H5Eclear1(void); __attribute__ ((visibility("default"))) herr_t H5Eget_auto1(H5E_auto1_t *func, void **client_data); __attribute__ ((visibility("default"))) herr_t H5Epush1(const char *file, const char *func, unsigned line, H5E_major_t maj, H5E_minor_t min, const char *str); __attribute__ ((visibility("default"))) herr_t H5Eprint1(FILE *stream); __attribute__ ((visibility("default"))) herr_t H5Eset_auto1(H5E_auto1_t func, void *client_data); __attribute__ ((visibility("default"))) herr_t H5Ewalk1(H5E_direction_t direction, H5E_walk1_t func, void *client_data); __attribute__ ((visibility("default"))) char *H5Eget_major(H5E_major_t maj); __attribute__ ((visibility("default"))) char *H5Eget_minor(H5E_minor_t min); # 29 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Fpublic.h" 1 # 79 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Fpublic.h" typedef enum H5F_scope_t { H5F_SCOPE_LOCAL = 0, H5F_SCOPE_GLOBAL = 1 } H5F_scope_t; # 95 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Fpublic.h" typedef enum H5F_close_degree_t { H5F_CLOSE_DEFAULT = 0, H5F_CLOSE_WEAK = 1, H5F_CLOSE_SEMI = 2, H5F_CLOSE_STRONG = 3 } H5F_close_degree_t; typedef struct H5F_info_t { hsize_t super_ext_size; struct { hsize_t hdr_size; H5_ih_info_t msgs_info; } sohm; } H5F_info_t; # 120 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Fpublic.h" typedef enum H5F_mem_t { H5FD_MEM_NOLIST = -1, H5FD_MEM_DEFAULT = 0, H5FD_MEM_SUPER = 1, H5FD_MEM_BTREE = 2, H5FD_MEM_DRAW = 3, H5FD_MEM_GHEAP = 4, H5FD_MEM_LHEAP = 5, H5FD_MEM_OHDR = 6, H5FD_MEM_NTYPES } H5F_mem_t; typedef enum H5F_libver_t { H5F_LIBVER_EARLIEST, H5F_LIBVER_LATEST } H5F_libver_t; # 154 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Fpublic.h" __attribute__ ((visibility("default"))) htri_t H5Fis_hdf5(const char *filename); __attribute__ ((visibility("default"))) hid_t H5Fcreate(const char *filename, unsigned flags, hid_t create_plist, hid_t access_plist); __attribute__ ((visibility("default"))) hid_t H5Fopen(const char *filename, unsigned flags, hid_t access_plist); __attribute__ ((visibility("default"))) hid_t H5Freopen(hid_t file_id); __attribute__ ((visibility("default"))) herr_t H5Fflush(hid_t object_id, H5F_scope_t scope); __attribute__ ((visibility("default"))) herr_t H5Fclose(hid_t file_id); __attribute__ ((visibility("default"))) hid_t H5Fget_create_plist(hid_t file_id); __attribute__ ((visibility("default"))) hid_t H5Fget_access_plist(hid_t file_id); __attribute__ ((visibility("default"))) herr_t H5Fget_intent(hid_t file_id, unsigned * intent); __attribute__ ((visibility("default"))) ssize_t H5Fget_obj_count(hid_t file_id, unsigned types); __attribute__ ((visibility("default"))) ssize_t H5Fget_obj_ids(hid_t file_id, unsigned types, size_t max_objs, hid_t *obj_id_list); __attribute__ ((visibility("default"))) herr_t H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle); __attribute__ ((visibility("default"))) herr_t H5Fmount(hid_t loc, const char *name, hid_t child, hid_t plist); __attribute__ ((visibility("default"))) herr_t H5Funmount(hid_t loc, const char *name); __attribute__ ((visibility("default"))) hssize_t H5Fget_freespace(hid_t file_id); __attribute__ ((visibility("default"))) herr_t H5Fget_filesize(hid_t file_id, hsize_t *size); __attribute__ ((visibility("default"))) ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len); __attribute__ ((visibility("default"))) herr_t H5Fget_mdc_config(hid_t file_id, H5AC_cache_config_t * config_ptr); __attribute__ ((visibility("default"))) herr_t H5Fset_mdc_config(hid_t file_id, H5AC_cache_config_t * config_ptr); __attribute__ ((visibility("default"))) herr_t H5Fget_mdc_hit_rate(hid_t file_id, double * hit_rate_ptr); __attribute__ ((visibility("default"))) herr_t H5Fget_mdc_size(hid_t file_id, size_t * max_size_ptr, size_t * min_clean_size_ptr, size_t * cur_size_ptr, int * cur_num_entries_ptr); __attribute__ ((visibility("default"))) herr_t H5Freset_mdc_hit_rate_stats(hid_t file_id); __attribute__ ((visibility("default"))) ssize_t H5Fget_name(hid_t obj_id, char *name, size_t size); __attribute__ ((visibility("default"))) herr_t H5Fget_info(hid_t obj_id, H5F_info_t *bh_info); __attribute__ ((visibility("default"))) herr_t H5Fclear_elink_file_cache(hid_t file_id); __attribute__ ((visibility("default"))) herr_t H5Fset_mpi_atomicity(hid_t file_id, hbool_t flag); __attribute__ ((visibility("default"))) herr_t H5Fget_mpi_atomicity(hid_t file_id, hbool_t *flag); # 30 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDpublic.h" 1 # 30 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDpublic.h" typedef enum H5F_mem_t H5FD_mem_t; # 206 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDpublic.h" typedef struct H5FD_t H5FD_t; typedef struct H5FD_class_t { const char *name; haddr_t maxaddr; H5F_close_degree_t fc_degree; hsize_t (*sb_size)(H5FD_t *file); herr_t (*sb_encode)(H5FD_t *file, char *name , unsigned char *p ); herr_t (*sb_decode)(H5FD_t *f, const char *name, const unsigned char *p); size_t fapl_size; void * (*fapl_get)(H5FD_t *file); void * (*fapl_copy)(const void *fapl); herr_t (*fapl_free)(void *fapl); size_t dxpl_size; void * (*dxpl_copy)(const void *dxpl); herr_t (*dxpl_free)(void *dxpl); H5FD_t *(*open)(const char *name, unsigned flags, hid_t fapl, haddr_t maxaddr); herr_t (*close)(H5FD_t *file); int (*cmp)(const H5FD_t *f1, const H5FD_t *f2); herr_t (*query)(const H5FD_t *f1, unsigned long *flags); herr_t (*get_type_map)(const H5FD_t *file, H5FD_mem_t *type_map); haddr_t (*alloc)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size); herr_t (*free)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size); haddr_t (*get_eoa)(const H5FD_t *file, H5FD_mem_t type); herr_t (*set_eoa)(H5FD_t *file, H5FD_mem_t type, haddr_t addr); haddr_t (*get_eof)(const H5FD_t *file); herr_t (*get_handle)(H5FD_t *file, hid_t fapl, void**file_handle); herr_t (*read)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl, haddr_t addr, size_t size, void *buffer); herr_t (*write)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl, haddr_t addr, size_t size, const void *buffer); herr_t (*flush)(H5FD_t *file, hid_t dxpl_id, unsigned closing); herr_t (*truncate)(H5FD_t *file, hid_t dxpl_id, hbool_t closing); herr_t (*lock)(H5FD_t *file, unsigned char *oid, unsigned lock_type, hbool_t last); herr_t (*unlock)(H5FD_t *file, unsigned char *oid, hbool_t last); H5FD_mem_t fl_map[H5FD_MEM_NTYPES]; } H5FD_class_t; typedef struct H5FD_free_t { haddr_t addr; hsize_t size; struct H5FD_free_t *next; } H5FD_free_t; struct H5FD_t { hid_t driver_id; const H5FD_class_t *cls; unsigned long fileno; unsigned long feature_flags; haddr_t maxaddr; haddr_t base_addr; hsize_t threshold; hsize_t alignment; }; typedef enum { H5FD_FILE_IMAGE_OP_NO_OP, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_SET, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_COPY, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_GET, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_CLOSE, H5FD_FILE_IMAGE_OP_FILE_OPEN, H5FD_FILE_IMAGE_OP_FILE_RESIZE, H5FD_FILE_IMAGE_OP_FILE_CLOSE } H5FD_file_image_op_t; typedef struct { void *(*image_malloc)(size_t size, H5FD_file_image_op_t file_image_op, void *udata); void *(*image_memcpy)(void *dest, const void *src, size_t size, H5FD_file_image_op_t file_image_op, void *udata); void *(*image_realloc)(void *ptr, size_t size, H5FD_file_image_op_t file_image_op, void *udata); herr_t (*image_free)(void *ptr, H5FD_file_image_op_t file_image_op, void *udata); void *(*udata_copy)(void *udata); herr_t (*udata_free)(void *udata); void *udata; } H5FD_file_image_callbacks_t; __attribute__ ((visibility("default"))) hid_t H5FDregister(const H5FD_class_t *cls); __attribute__ ((visibility("default"))) herr_t H5FDunregister(hid_t driver_id); __attribute__ ((visibility("default"))) H5FD_t *H5FDopen(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr); __attribute__ ((visibility("default"))) herr_t H5FDclose(H5FD_t *file); __attribute__ ((visibility("default"))) int H5FDcmp(const H5FD_t *f1, const H5FD_t *f2); __attribute__ ((visibility("default"))) int H5FDquery(const H5FD_t *f, unsigned long *flags); __attribute__ ((visibility("default"))) haddr_t H5FDalloc(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size); __attribute__ ((visibility("default"))) herr_t H5FDfree(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size); __attribute__ ((visibility("default"))) haddr_t H5FDget_eoa(H5FD_t *file, H5FD_mem_t type); __attribute__ ((visibility("default"))) herr_t H5FDset_eoa(H5FD_t *file, H5FD_mem_t type, haddr_t eoa); __attribute__ ((visibility("default"))) haddr_t H5FDget_eof(H5FD_t *file); __attribute__ ((visibility("default"))) herr_t H5FDget_vfd_handle(H5FD_t *file, hid_t fapl, void**file_handle); __attribute__ ((visibility("default"))) herr_t H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, void *buf ); __attribute__ ((visibility("default"))) herr_t H5FDwrite(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, const void *buf); __attribute__ ((visibility("default"))) herr_t H5FDflush(H5FD_t *file, hid_t dxpl_id, unsigned closing); __attribute__ ((visibility("default"))) herr_t H5FDtruncate(H5FD_t *file, hid_t dxpl_id, hbool_t closing); # 31 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Gpublic.h" 1 # 51 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Gpublic.h" typedef enum H5G_storage_type_t { H5G_STORAGE_TYPE_UNKNOWN = -1, H5G_STORAGE_TYPE_SYMBOL_TABLE, H5G_STORAGE_TYPE_COMPACT, H5G_STORAGE_TYPE_DENSE } H5G_storage_type_t; typedef struct H5G_info_t { H5G_storage_type_t storage_type; hsize_t nlinks; int64_t max_corder; hbool_t mounted; } H5G_info_t; # 75 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Gpublic.h" __attribute__ ((visibility("default"))) hid_t H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id, hid_t gcpl_id, hid_t gapl_id); __attribute__ ((visibility("default"))) hid_t H5Gcreate_anon(hid_t loc_id, hid_t gcpl_id, hid_t gapl_id); __attribute__ ((visibility("default"))) hid_t H5Gopen2(hid_t loc_id, const char *name, hid_t gapl_id); __attribute__ ((visibility("default"))) hid_t H5Gget_create_plist(hid_t group_id); __attribute__ ((visibility("default"))) herr_t H5Gget_info(hid_t loc_id, H5G_info_t *ginfo); __attribute__ ((visibility("default"))) herr_t H5Gget_info_by_name(hid_t loc_id, const char *name, H5G_info_t *ginfo, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Gget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5G_info_t *ginfo, hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Gclose(hid_t group_id); # 119 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Gpublic.h" typedef enum H5G_obj_t { H5G_UNKNOWN = -1, H5G_GROUP, H5G_DATASET, H5G_TYPE, H5G_LINK, H5G_UDLINK, H5G_RESERVED_5, H5G_RESERVED_6, H5G_RESERVED_7 } H5G_obj_t; typedef herr_t (*H5G_iterate_t)(hid_t group, const char *name, void *op_data); typedef struct H5G_stat_t { unsigned long fileno[2]; unsigned long objno[2]; unsigned nlink; H5G_obj_t type; time_t mtime; size_t linklen; H5O_stat_t ohdr; } H5G_stat_t; __attribute__ ((visibility("default"))) hid_t H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint); __attribute__ ((visibility("default"))) hid_t H5Gopen1(hid_t loc_id, const char *name); __attribute__ ((visibility("default"))) herr_t H5Glink(hid_t cur_loc_id, H5L_type_t type, const char *cur_name, const char *new_name); __attribute__ ((visibility("default"))) herr_t H5Glink2(hid_t cur_loc_id, const char *cur_name, H5L_type_t type, hid_t new_loc_id, const char *new_name); __attribute__ ((visibility("default"))) herr_t H5Gmove(hid_t src_loc_id, const char *src_name, const char *dst_name); __attribute__ ((visibility("default"))) herr_t H5Gmove2(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name); __attribute__ ((visibility("default"))) herr_t H5Gunlink(hid_t loc_id, const char *name); __attribute__ ((visibility("default"))) herr_t H5Gget_linkval(hid_t loc_id, const char *name, size_t size, char *buf ); __attribute__ ((visibility("default"))) herr_t H5Gset_comment(hid_t loc_id, const char *name, const char *comment); __attribute__ ((visibility("default"))) int H5Gget_comment(hid_t loc_id, const char *name, size_t bufsize, char *buf); __attribute__ ((visibility("default"))) herr_t H5Giterate(hid_t loc_id, const char *name, int *idx, H5G_iterate_t op, void *op_data); __attribute__ ((visibility("default"))) herr_t H5Gget_num_objs(hid_t loc_id, hsize_t *num_objs); __attribute__ ((visibility("default"))) herr_t H5Gget_objinfo(hid_t loc_id, const char *name, hbool_t follow_link, H5G_stat_t *statbuf ); __attribute__ ((visibility("default"))) ssize_t H5Gget_objname_by_idx(hid_t loc_id, hsize_t idx, char* name, size_t size); __attribute__ ((visibility("default"))) H5G_obj_t H5Gget_objtype_by_idx(hid_t loc_id, hsize_t idx); # 32 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5MMpublic.h" 1 # 36 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5MMpublic.h" typedef void *(*H5MM_allocate_t)(size_t size, void *alloc_info); typedef void (*H5MM_free_t)(void *mem, void *free_info); # 35 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ppublic.h" 1 # 36 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ppublic.h" # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Zpublic.h" 1 # 33 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Zpublic.h" typedef int H5Z_filter_t; # 99 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Zpublic.h" typedef enum H5Z_SO_scale_type_t { H5Z_SO_FLOAT_DSCALE = 0, H5Z_SO_FLOAT_ESCALE = 1, H5Z_SO_INT = 2 } H5Z_SO_scale_type_t; typedef enum H5Z_EDC_t { H5Z_ERROR_EDC = -1, H5Z_DISABLE_EDC = 0, H5Z_ENABLE_EDC = 1, H5Z_NO_EDC = 2 } H5Z_EDC_t; typedef enum H5Z_cb_return_t { H5Z_CB_ERROR = -1, H5Z_CB_FAIL = 0, H5Z_CB_CONT = 1, H5Z_CB_NO = 2 } H5Z_cb_return_t; typedef H5Z_cb_return_t (*H5Z_filter_func_t)(H5Z_filter_t filter, void* buf, size_t buf_size, void* op_data); typedef struct H5Z_cb_t { H5Z_filter_func_t func; void* op_data; } H5Z_cb_t; # 162 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Zpublic.h" typedef htri_t (*H5Z_can_apply_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id); # 185 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Zpublic.h" typedef herr_t (*H5Z_set_local_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id); # 202 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Zpublic.h" typedef size_t (*H5Z_func_t)(unsigned int flags, size_t cd_nelmts, const unsigned int cd_values[], size_t nbytes, size_t *buf_size, void **buf); typedef struct H5Z_class2_t { int version; H5Z_filter_t id; unsigned encoder_present; unsigned decoder_present; const char *name; H5Z_can_apply_func_t can_apply; H5Z_set_local_func_t set_local; H5Z_func_t filter; } H5Z_class2_t; __attribute__ ((visibility("default"))) herr_t H5Zregister(const void *cls); __attribute__ ((visibility("default"))) herr_t H5Zunregister(H5Z_filter_t id); __attribute__ ((visibility("default"))) htri_t H5Zfilter_avail(H5Z_filter_t id); __attribute__ ((visibility("default"))) herr_t H5Zget_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags); # 236 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Zpublic.h" typedef struct H5Z_class1_t { H5Z_filter_t id; const char *name; H5Z_can_apply_func_t can_apply; H5Z_set_local_func_t set_local; H5Z_func_t filter; } H5Z_class1_t; # 37 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ppublic.h" 2 # 108 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ppublic.h" typedef herr_t (*H5P_cls_create_func_t)(hid_t prop_id, void *create_data); typedef herr_t (*H5P_cls_copy_func_t)(hid_t new_prop_id, hid_t old_prop_id, void *copy_data); typedef herr_t (*H5P_cls_close_func_t)(hid_t prop_id, void *close_data); typedef herr_t (*H5P_prp_cb1_t)(const char *name, size_t size, void *value); typedef herr_t (*H5P_prp_cb2_t)(hid_t prop_id, const char *name, size_t size, void *value); typedef H5P_prp_cb1_t H5P_prp_create_func_t; typedef H5P_prp_cb2_t H5P_prp_set_func_t; typedef H5P_prp_cb2_t H5P_prp_get_func_t; typedef H5P_prp_cb2_t H5P_prp_delete_func_t; typedef H5P_prp_cb1_t H5P_prp_copy_func_t; typedef int (*H5P_prp_compare_func_t)(const void *value1, const void *value2, size_t size); typedef H5P_prp_cb1_t H5P_prp_close_func_t; typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data); typedef enum H5D_mpio_actual_chunk_opt_mode_t { H5D_MPIO_NO_CHUNK_OPTIMIZATION = 0, H5D_MPIO_LINK_CHUNK, H5D_MPIO_MULTI_CHUNK } H5D_mpio_actual_chunk_opt_mode_t; typedef enum H5D_mpio_actual_io_mode_t { # 149 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ppublic.h" H5D_MPIO_NO_COLLECTIVE = 0x0, H5D_MPIO_CHUNK_INDEPENDENT = 0x1, H5D_MPIO_CHUNK_COLLECTIVE = 0x2, H5D_MPIO_CHUNK_MIXED = 0x1 | 0x2, H5D_MPIO_CONTIGUOUS_COLLECTIVE = 0x4 } H5D_mpio_actual_io_mode_t; typedef enum H5D_mpio_no_collective_cause_t { H5D_MPIO_COLLECTIVE = 0x00, H5D_MPIO_SET_INDEPENDENT = 0x01, H5D_MPIO_DATATYPE_CONVERSION = 0x02, H5D_MPIO_DATA_TRANSFORMS = 0x04, H5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED = 0x08, H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES = 0x10, H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET = 0x20, H5D_MPIO_FILTERS = 0x40 } H5D_mpio_no_collective_cause_t; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_ROOT_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_OBJECT_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_FILE_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_FILE_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_DATASET_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_DATASET_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_DATASET_XFER_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_FILE_MOUNT_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_GROUP_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_GROUP_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_DATATYPE_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_DATATYPE_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_STRING_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_ATTRIBUTE_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_OBJECT_COPY_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_LINK_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_CLS_LINK_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_FILE_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_FILE_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_DATASET_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_DATASET_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_DATASET_XFER_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_FILE_MOUNT_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_GROUP_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_GROUP_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_DATATYPE_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_DATATYPE_ACCESS_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_ATTRIBUTE_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_OBJECT_COPY_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_LINK_CREATE_ID_g; extern __attribute__ ((visibility("default"))) hid_t H5P_LST_LINK_ACCESS_ID_g; __attribute__ ((visibility("default"))) hid_t H5Pcreate_class(hid_t parent, const char *name, H5P_cls_create_func_t cls_create, void *create_data, H5P_cls_copy_func_t cls_copy, void *copy_data, H5P_cls_close_func_t cls_close, void *close_data); __attribute__ ((visibility("default"))) char *H5Pget_class_name(hid_t pclass_id); __attribute__ ((visibility("default"))) hid_t H5Pcreate(hid_t cls_id); __attribute__ ((visibility("default"))) herr_t H5Pregister2(hid_t cls_id, const char *name, size_t size, void *def_value, H5P_prp_create_func_t prp_create, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close); __attribute__ ((visibility("default"))) herr_t H5Pinsert2(hid_t plist_id, const char *name, size_t size, void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close); __attribute__ ((visibility("default"))) herr_t H5Pset(hid_t plist_id, const char *name, void *value); __attribute__ ((visibility("default"))) htri_t H5Pexist(hid_t plist_id, const char *name); __attribute__ ((visibility("default"))) herr_t H5Pget_size(hid_t id, const char *name, size_t *size); __attribute__ ((visibility("default"))) herr_t H5Pget_nprops(hid_t id, size_t *nprops); __attribute__ ((visibility("default"))) hid_t H5Pget_class(hid_t plist_id); __attribute__ ((visibility("default"))) hid_t H5Pget_class_parent(hid_t pclass_id); __attribute__ ((visibility("default"))) herr_t H5Pget(hid_t plist_id, const char *name, void * value); __attribute__ ((visibility("default"))) htri_t H5Pequal(hid_t id1, hid_t id2); __attribute__ ((visibility("default"))) htri_t H5Pisa_class(hid_t plist_id, hid_t pclass_id); __attribute__ ((visibility("default"))) int H5Piterate(hid_t id, int *idx, H5P_iterate_t iter_func, void *iter_data); __attribute__ ((visibility("default"))) herr_t H5Pcopy_prop(hid_t dst_id, hid_t src_id, const char *name); __attribute__ ((visibility("default"))) herr_t H5Premove(hid_t plist_id, const char *name); __attribute__ ((visibility("default"))) herr_t H5Punregister(hid_t pclass_id, const char *name); __attribute__ ((visibility("default"))) herr_t H5Pclose_class(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pclose(hid_t plist_id); __attribute__ ((visibility("default"))) hid_t H5Pcopy(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pset_attr_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense); __attribute__ ((visibility("default"))) herr_t H5Pget_attr_phase_change(hid_t plist_id, unsigned *max_compact, unsigned *min_dense); __attribute__ ((visibility("default"))) herr_t H5Pset_attr_creation_order(hid_t plist_id, unsigned crt_order_flags); __attribute__ ((visibility("default"))) herr_t H5Pget_attr_creation_order(hid_t plist_id, unsigned *crt_order_flags); __attribute__ ((visibility("default"))) herr_t H5Pset_obj_track_times(hid_t plist_id, hbool_t track_times); __attribute__ ((visibility("default"))) herr_t H5Pget_obj_track_times(hid_t plist_id, hbool_t *track_times); __attribute__ ((visibility("default"))) herr_t H5Pmodify_filter(hid_t plist_id, H5Z_filter_t filter, unsigned int flags, size_t cd_nelmts, const unsigned int cd_values[ ]); __attribute__ ((visibility("default"))) herr_t H5Pset_filter(hid_t plist_id, H5Z_filter_t filter, unsigned int flags, size_t cd_nelmts, const unsigned int c_values[]); __attribute__ ((visibility("default"))) int H5Pget_nfilters(hid_t plist_id); __attribute__ ((visibility("default"))) H5Z_filter_t H5Pget_filter2(hid_t plist_id, unsigned filter, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[], unsigned *filter_config ); __attribute__ ((visibility("default"))) herr_t H5Pget_filter_by_id2(hid_t plist_id, H5Z_filter_t id, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[] , unsigned *filter_config ); __attribute__ ((visibility("default"))) htri_t H5Pall_filters_avail(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Premove_filter(hid_t plist_id, H5Z_filter_t filter); __attribute__ ((visibility("default"))) herr_t H5Pset_deflate(hid_t plist_id, unsigned aggression); __attribute__ ((visibility("default"))) herr_t H5Pset_fletcher32(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pget_version(hid_t plist_id, unsigned *boot , unsigned *freelist , unsigned *stab , unsigned *shhdr ); __attribute__ ((visibility("default"))) herr_t H5Pset_userblock(hid_t plist_id, hsize_t size); __attribute__ ((visibility("default"))) herr_t H5Pget_userblock(hid_t plist_id, hsize_t *size); __attribute__ ((visibility("default"))) herr_t H5Pset_sizes(hid_t plist_id, size_t sizeof_addr, size_t sizeof_size); __attribute__ ((visibility("default"))) herr_t H5Pget_sizes(hid_t plist_id, size_t *sizeof_addr , size_t *sizeof_size ); __attribute__ ((visibility("default"))) herr_t H5Pset_sym_k(hid_t plist_id, unsigned ik, unsigned lk); __attribute__ ((visibility("default"))) herr_t H5Pget_sym_k(hid_t plist_id, unsigned *ik , unsigned *lk ); __attribute__ ((visibility("default"))) herr_t H5Pset_istore_k(hid_t plist_id, unsigned ik); __attribute__ ((visibility("default"))) herr_t H5Pget_istore_k(hid_t plist_id, unsigned *ik ); __attribute__ ((visibility("default"))) herr_t H5Pset_shared_mesg_nindexes(hid_t plist_id, unsigned nindexes); __attribute__ ((visibility("default"))) herr_t H5Pget_shared_mesg_nindexes(hid_t plist_id, unsigned *nindexes); __attribute__ ((visibility("default"))) herr_t H5Pset_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned mesg_type_flags, unsigned min_mesg_size); __attribute__ ((visibility("default"))) herr_t H5Pget_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned *mesg_type_flags, unsigned *min_mesg_size); __attribute__ ((visibility("default"))) herr_t H5Pset_shared_mesg_phase_change(hid_t plist_id, unsigned max_list, unsigned min_btree); __attribute__ ((visibility("default"))) herr_t H5Pget_shared_mesg_phase_change(hid_t plist_id, unsigned *max_list, unsigned *min_btree); __attribute__ ((visibility("default"))) herr_t H5Pset_alignment(hid_t fapl_id, hsize_t threshold, hsize_t alignment); __attribute__ ((visibility("default"))) herr_t H5Pget_alignment(hid_t fapl_id, hsize_t *threshold , hsize_t *alignment ); __attribute__ ((visibility("default"))) herr_t H5Pset_driver(hid_t plist_id, hid_t driver_id, const void *driver_info); __attribute__ ((visibility("default"))) hid_t H5Pget_driver(hid_t plist_id); __attribute__ ((visibility("default"))) void *H5Pget_driver_info(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pset_family_offset(hid_t fapl_id, hsize_t offset); __attribute__ ((visibility("default"))) herr_t H5Pget_family_offset(hid_t fapl_id, hsize_t *offset); __attribute__ ((visibility("default"))) herr_t H5Pset_multi_type(hid_t fapl_id, H5FD_mem_t type); __attribute__ ((visibility("default"))) herr_t H5Pget_multi_type(hid_t fapl_id, H5FD_mem_t *type); __attribute__ ((visibility("default"))) herr_t H5Pset_cache(hid_t plist_id, int mdc_nelmts, size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0); __attribute__ ((visibility("default"))) herr_t H5Pget_cache(hid_t plist_id, int *mdc_nelmts, size_t *rdcc_nslots , size_t *rdcc_nbytes , double *rdcc_w0); __attribute__ ((visibility("default"))) herr_t H5Pset_mdc_config(hid_t plist_id, H5AC_cache_config_t * config_ptr); __attribute__ ((visibility("default"))) herr_t H5Pget_mdc_config(hid_t plist_id, H5AC_cache_config_t * config_ptr); __attribute__ ((visibility("default"))) herr_t H5Pset_gc_references(hid_t fapl_id, unsigned gc_ref); __attribute__ ((visibility("default"))) herr_t H5Pget_gc_references(hid_t fapl_id, unsigned *gc_ref ); __attribute__ ((visibility("default"))) herr_t H5Pset_fclose_degree(hid_t fapl_id, H5F_close_degree_t degree); __attribute__ ((visibility("default"))) herr_t H5Pget_fclose_degree(hid_t fapl_id, H5F_close_degree_t *degree); __attribute__ ((visibility("default"))) herr_t H5Pset_meta_block_size(hid_t fapl_id, hsize_t size); __attribute__ ((visibility("default"))) herr_t H5Pget_meta_block_size(hid_t fapl_id, hsize_t *size ); __attribute__ ((visibility("default"))) herr_t H5Pset_sieve_buf_size(hid_t fapl_id, size_t size); __attribute__ ((visibility("default"))) herr_t H5Pget_sieve_buf_size(hid_t fapl_id, size_t *size ); __attribute__ ((visibility("default"))) herr_t H5Pset_small_data_block_size(hid_t fapl_id, hsize_t size); __attribute__ ((visibility("default"))) herr_t H5Pget_small_data_block_size(hid_t fapl_id, hsize_t *size ); __attribute__ ((visibility("default"))) herr_t H5Pset_libver_bounds(hid_t plist_id, H5F_libver_t low, H5F_libver_t high); __attribute__ ((visibility("default"))) herr_t H5Pget_libver_bounds(hid_t plist_id, H5F_libver_t *low, H5F_libver_t *high); __attribute__ ((visibility("default"))) herr_t H5Pset_elink_file_cache_size(hid_t plist_id, unsigned efc_size); __attribute__ ((visibility("default"))) herr_t H5Pget_elink_file_cache_size(hid_t plist_id, unsigned *efc_size); __attribute__ ((visibility("default"))) herr_t H5Pset_file_image(hid_t fapl_id, void *buf_ptr, size_t buf_len); __attribute__ ((visibility("default"))) herr_t H5Pget_file_image(hid_t fapl_id, void **buf_ptr_ptr, size_t *buf_len_ptr); __attribute__ ((visibility("default"))) herr_t H5Pset_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr); __attribute__ ((visibility("default"))) herr_t H5Pget_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr); __attribute__ ((visibility("default"))) herr_t H5Pset_core_write_tracking(hid_t fapl_id, hbool_t is_enabled, size_t page_size); __attribute__ ((visibility("default"))) herr_t H5Pget_core_write_tracking(hid_t fapl_id, hbool_t *is_enabled, size_t *page_size); __attribute__ ((visibility("default"))) herr_t H5Pset_layout(hid_t plist_id, H5D_layout_t layout); __attribute__ ((visibility("default"))) H5D_layout_t H5Pget_layout(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pset_chunk(hid_t plist_id, int ndims, const hsize_t dim[ ]); __attribute__ ((visibility("default"))) int H5Pget_chunk(hid_t plist_id, int max_ndims, hsize_t dim[] ); __attribute__ ((visibility("default"))) herr_t H5Pset_external(hid_t plist_id, const char *name, off_t offset, hsize_t size); __attribute__ ((visibility("default"))) int H5Pget_external_count(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pget_external(hid_t plist_id, unsigned idx, size_t name_size, char *name , off_t *offset , hsize_t *size ); __attribute__ ((visibility("default"))) herr_t H5Pset_szip(hid_t plist_id, unsigned options_mask, unsigned pixels_per_block); __attribute__ ((visibility("default"))) herr_t H5Pset_shuffle(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pset_nbit(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pset_scaleoffset(hid_t plist_id, H5Z_SO_scale_type_t scale_type, int scale_factor); __attribute__ ((visibility("default"))) herr_t H5Pset_fill_value(hid_t plist_id, hid_t type_id, const void *value); __attribute__ ((visibility("default"))) herr_t H5Pget_fill_value(hid_t plist_id, hid_t type_id, void *value ); __attribute__ ((visibility("default"))) herr_t H5Pfill_value_defined(hid_t plist, H5D_fill_value_t *status); __attribute__ ((visibility("default"))) herr_t H5Pset_alloc_time(hid_t plist_id, H5D_alloc_time_t alloc_time); __attribute__ ((visibility("default"))) herr_t H5Pget_alloc_time(hid_t plist_id, H5D_alloc_time_t *alloc_time ); __attribute__ ((visibility("default"))) herr_t H5Pset_fill_time(hid_t plist_id, H5D_fill_time_t fill_time); __attribute__ ((visibility("default"))) herr_t H5Pget_fill_time(hid_t plist_id, H5D_fill_time_t *fill_time ); __attribute__ ((visibility("default"))) herr_t H5Pset_chunk_cache(hid_t dapl_id, size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0); __attribute__ ((visibility("default"))) herr_t H5Pget_chunk_cache(hid_t dapl_id, size_t *rdcc_nslots , size_t *rdcc_nbytes , double *rdcc_w0 ); __attribute__ ((visibility("default"))) herr_t H5Pset_data_transform(hid_t plist_id, const char* expression); __attribute__ ((visibility("default"))) ssize_t H5Pget_data_transform(hid_t plist_id, char* expression , size_t size); __attribute__ ((visibility("default"))) herr_t H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg); __attribute__ ((visibility("default"))) size_t H5Pget_buffer(hid_t plist_id, void **tconv , void **bkg ); __attribute__ ((visibility("default"))) herr_t H5Pset_preserve(hid_t plist_id, hbool_t status); __attribute__ ((visibility("default"))) int H5Pget_preserve(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pset_edc_check(hid_t plist_id, H5Z_EDC_t check); __attribute__ ((visibility("default"))) H5Z_EDC_t H5Pget_edc_check(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pset_filter_callback(hid_t plist_id, H5Z_filter_func_t func, void* op_data); __attribute__ ((visibility("default"))) herr_t H5Pset_btree_ratios(hid_t plist_id, double left, double middle, double right); __attribute__ ((visibility("default"))) herr_t H5Pget_btree_ratios(hid_t plist_id, double *left , double *middle , double *right ); __attribute__ ((visibility("default"))) herr_t H5Pset_vlen_mem_manager(hid_t plist_id, H5MM_allocate_t alloc_func, void *alloc_info, H5MM_free_t free_func, void *free_info); __attribute__ ((visibility("default"))) herr_t H5Pget_vlen_mem_manager(hid_t plist_id, H5MM_allocate_t *alloc_func, void **alloc_info, H5MM_free_t *free_func, void **free_info); __attribute__ ((visibility("default"))) herr_t H5Pset_hyper_vector_size(hid_t fapl_id, size_t size); __attribute__ ((visibility("default"))) herr_t H5Pget_hyper_vector_size(hid_t fapl_id, size_t *size ); __attribute__ ((visibility("default"))) herr_t H5Pset_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t op, void* operate_data); __attribute__ ((visibility("default"))) herr_t H5Pget_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t *op, void** operate_data); __attribute__ ((visibility("default"))) herr_t H5Pget_mpio_actual_chunk_opt_mode(hid_t plist_id, H5D_mpio_actual_chunk_opt_mode_t *actual_chunk_opt_mode); __attribute__ ((visibility("default"))) herr_t H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t *actual_io_mode); __attribute__ ((visibility("default"))) herr_t H5Pget_mpio_no_collective_cause(hid_t plist_id, uint32_t *local_no_collective_cause, uint32_t *global_no_collective_cause); __attribute__ ((visibility("default"))) herr_t H5Pset_create_intermediate_group(hid_t plist_id, unsigned crt_intmd); __attribute__ ((visibility("default"))) herr_t H5Pget_create_intermediate_group(hid_t plist_id, unsigned *crt_intmd ); __attribute__ ((visibility("default"))) herr_t H5Pset_local_heap_size_hint(hid_t plist_id, size_t size_hint); __attribute__ ((visibility("default"))) herr_t H5Pget_local_heap_size_hint(hid_t plist_id, size_t *size_hint ); __attribute__ ((visibility("default"))) herr_t H5Pset_link_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense); __attribute__ ((visibility("default"))) herr_t H5Pget_link_phase_change(hid_t plist_id, unsigned *max_compact , unsigned *min_dense ); __attribute__ ((visibility("default"))) herr_t H5Pset_est_link_info(hid_t plist_id, unsigned est_num_entries, unsigned est_name_len); __attribute__ ((visibility("default"))) herr_t H5Pget_est_link_info(hid_t plist_id, unsigned *est_num_entries , unsigned *est_name_len ); __attribute__ ((visibility("default"))) herr_t H5Pset_link_creation_order(hid_t plist_id, unsigned crt_order_flags); __attribute__ ((visibility("default"))) herr_t H5Pget_link_creation_order(hid_t plist_id, unsigned *crt_order_flags ); __attribute__ ((visibility("default"))) herr_t H5Pset_char_encoding(hid_t plist_id, H5T_cset_t encoding); __attribute__ ((visibility("default"))) herr_t H5Pget_char_encoding(hid_t plist_id, H5T_cset_t *encoding ); __attribute__ ((visibility("default"))) herr_t H5Pset_nlinks(hid_t plist_id, size_t nlinks); __attribute__ ((visibility("default"))) herr_t H5Pget_nlinks(hid_t plist_id, size_t *nlinks); __attribute__ ((visibility("default"))) herr_t H5Pset_elink_prefix(hid_t plist_id, const char *prefix); __attribute__ ((visibility("default"))) ssize_t H5Pget_elink_prefix(hid_t plist_id, char *prefix, size_t size); __attribute__ ((visibility("default"))) hid_t H5Pget_elink_fapl(hid_t lapl_id); __attribute__ ((visibility("default"))) herr_t H5Pset_elink_fapl(hid_t lapl_id, hid_t fapl_id); __attribute__ ((visibility("default"))) herr_t H5Pset_elink_acc_flags(hid_t lapl_id, unsigned flags); __attribute__ ((visibility("default"))) herr_t H5Pget_elink_acc_flags(hid_t lapl_id, unsigned *flags); __attribute__ ((visibility("default"))) herr_t H5Pset_elink_cb(hid_t lapl_id, H5L_elink_traverse_t func, void *op_data); __attribute__ ((visibility("default"))) herr_t H5Pget_elink_cb(hid_t lapl_id, H5L_elink_traverse_t *func, void **op_data); __attribute__ ((visibility("default"))) herr_t H5Pset_copy_object(hid_t plist_id, unsigned crt_intmd); __attribute__ ((visibility("default"))) herr_t H5Pget_copy_object(hid_t plist_id, unsigned *crt_intmd ); __attribute__ ((visibility("default"))) herr_t H5Padd_merge_committed_dtype_path(hid_t plist_id, const char *path); __attribute__ ((visibility("default"))) herr_t H5Pfree_merge_committed_dtype_paths(hid_t plist_id); __attribute__ ((visibility("default"))) herr_t H5Pset_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t func, void *op_data); __attribute__ ((visibility("default"))) herr_t H5Pget_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t *func, void **op_data); # 476 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Ppublic.h" __attribute__ ((visibility("default"))) herr_t H5Pregister1(hid_t cls_id, const char *name, size_t size, void *def_value, H5P_prp_create_func_t prp_create, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy, H5P_prp_close_func_t prp_close); __attribute__ ((visibility("default"))) herr_t H5Pinsert1(hid_t plist_id, const char *name, size_t size, void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy, H5P_prp_close_func_t prp_close); __attribute__ ((visibility("default"))) H5Z_filter_t H5Pget_filter1(hid_t plist_id, unsigned filter, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[]); __attribute__ ((visibility("default"))) herr_t H5Pget_filter_by_id1(hid_t plist_id, H5Z_filter_t id, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[] ); # 37 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5PLpublic.h" 1 # 30 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5PLpublic.h" typedef enum H5PL_type_t { H5PL_TYPE_ERROR = -1, H5PL_TYPE_FILTER = 0, H5PL_TYPE_NONE = 1 } H5PL_type_t; # 45 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5PLpublic.h" __attribute__ ((visibility("default"))) herr_t H5PLset_loading_state(unsigned int plugin_type); __attribute__ ((visibility("default"))) herr_t H5PLget_loading_state(unsigned int *plugin_type ); # 38 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Rpublic.h" 1 # 30 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Rpublic.h" typedef enum { H5R_BADTYPE = (-1), H5R_OBJECT, H5R_DATASET_REGION, H5R_MAXTYPE } H5R_type_t; # 44 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Rpublic.h" typedef haddr_t hobj_ref_t; typedef unsigned char hdset_reg_ref_t[(sizeof(haddr_t)+4)]; # 61 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Rpublic.h" __attribute__ ((visibility("default"))) herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, hid_t space_id); __attribute__ ((visibility("default"))) hid_t H5Rdereference(hid_t dataset, H5R_type_t ref_type, const void *ref); __attribute__ ((visibility("default"))) hid_t H5Rget_region(hid_t dataset, H5R_type_t ref_type, const void *ref); __attribute__ ((visibility("default"))) herr_t H5Rget_obj_type2(hid_t id, H5R_type_t ref_type, const void *_ref, H5O_type_t *obj_type); __attribute__ ((visibility("default"))) ssize_t H5Rget_name(hid_t loc_id, H5R_type_t ref_type, const void *ref, char *name , size_t size); # 83 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Rpublic.h" __attribute__ ((visibility("default"))) H5G_obj_t H5Rget_obj_type1(hid_t id, H5R_type_t ref_type, const void *_ref); # 39 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Spublic.h" 1 # 34 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Spublic.h" typedef enum H5S_class_t { H5S_NO_CLASS = -1, H5S_SCALAR = 0, H5S_SIMPLE = 1, H5S_NULL = 2 } H5S_class_t; typedef enum H5S_seloper_t { H5S_SELECT_NOOP = -1, H5S_SELECT_SET = 0, H5S_SELECT_OR, H5S_SELECT_AND, H5S_SELECT_XOR, H5S_SELECT_NOTB, H5S_SELECT_NOTA, H5S_SELECT_APPEND, H5S_SELECT_PREPEND, H5S_SELECT_INVALID } H5S_seloper_t; typedef enum { H5S_SEL_ERROR = -1, H5S_SEL_NONE = 0, H5S_SEL_POINTS = 1, H5S_SEL_HYPERSLABS = 2, H5S_SEL_ALL = 3, H5S_SEL_N }H5S_sel_type; __attribute__ ((visibility("default"))) hid_t H5Screate(H5S_class_t type); __attribute__ ((visibility("default"))) hid_t H5Screate_simple(int rank, const hsize_t dims[], const hsize_t maxdims[]); __attribute__ ((visibility("default"))) herr_t H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[], const hsize_t max[]); __attribute__ ((visibility("default"))) hid_t H5Scopy(hid_t space_id); __attribute__ ((visibility("default"))) herr_t H5Sclose(hid_t space_id); __attribute__ ((visibility("default"))) herr_t H5Sencode(hid_t obj_id, void *buf, size_t *nalloc); __attribute__ ((visibility("default"))) hid_t H5Sdecode(const void *buf); __attribute__ ((visibility("default"))) hssize_t H5Sget_simple_extent_npoints(hid_t space_id); __attribute__ ((visibility("default"))) int H5Sget_simple_extent_ndims(hid_t space_id); __attribute__ ((visibility("default"))) int H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[], hsize_t maxdims[]); __attribute__ ((visibility("default"))) htri_t H5Sis_simple(hid_t space_id); __attribute__ ((visibility("default"))) hssize_t H5Sget_select_npoints(hid_t spaceid); __attribute__ ((visibility("default"))) herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[], const hsize_t _stride[], const hsize_t count[], const hsize_t _block[]); # 128 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5Spublic.h" __attribute__ ((visibility("default"))) herr_t H5Sselect_elements(hid_t space_id, H5S_seloper_t op, size_t num_elem, const hsize_t *coord); __attribute__ ((visibility("default"))) H5S_class_t H5Sget_simple_extent_type(hid_t space_id); __attribute__ ((visibility("default"))) herr_t H5Sset_extent_none(hid_t space_id); __attribute__ ((visibility("default"))) herr_t H5Sextent_copy(hid_t dst_id,hid_t src_id); __attribute__ ((visibility("default"))) htri_t H5Sextent_equal(hid_t sid1, hid_t sid2); __attribute__ ((visibility("default"))) herr_t H5Sselect_all(hid_t spaceid); __attribute__ ((visibility("default"))) herr_t H5Sselect_none(hid_t spaceid); __attribute__ ((visibility("default"))) herr_t H5Soffset_simple(hid_t space_id, const hssize_t *offset); __attribute__ ((visibility("default"))) htri_t H5Sselect_valid(hid_t spaceid); __attribute__ ((visibility("default"))) hssize_t H5Sget_select_hyper_nblocks(hid_t spaceid); __attribute__ ((visibility("default"))) hssize_t H5Sget_select_elem_npoints(hid_t spaceid); __attribute__ ((visibility("default"))) herr_t H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock, hsize_t numblocks, hsize_t buf[ ]); __attribute__ ((visibility("default"))) herr_t H5Sget_select_elem_pointlist(hid_t spaceid, hsize_t startpoint, hsize_t numpoints, hsize_t buf[ ]); __attribute__ ((visibility("default"))) herr_t H5Sget_select_bounds(hid_t spaceid, hsize_t start[], hsize_t end[]); __attribute__ ((visibility("default"))) H5S_sel_type H5Sget_select_type(hid_t spaceid); # 40 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDcore.h" 1 # 32 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDcore.h" __attribute__ ((visibility("default"))) hid_t H5FD_core_init(void); __attribute__ ((visibility("default"))) void H5FD_core_term(void); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_core(hid_t fapl_id, size_t increment, hbool_t backing_store); __attribute__ ((visibility("default"))) herr_t H5Pget_fapl_core(hid_t fapl_id, size_t *increment , hbool_t *backing_store ); # 45 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDfamily.h" 1 # 33 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDfamily.h" __attribute__ ((visibility("default"))) hid_t H5FD_family_init(void); __attribute__ ((visibility("default"))) void H5FD_family_term(void); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_family(hid_t fapl_id, hsize_t memb_size, hid_t memb_fapl_id); __attribute__ ((visibility("default"))) herr_t H5Pget_fapl_family(hid_t fapl_id, hsize_t *memb_size , hid_t *memb_fapl_id ); # 46 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDlog.h" 1 # 63 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDlog.h" __attribute__ ((visibility("default"))) hid_t H5FD_log_init(void); __attribute__ ((visibility("default"))) void H5FD_log_term(void); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); # 47 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDmpi.h" 1 # 40 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDmpi.h" typedef enum H5FD_mpio_xfer_t { H5FD_MPIO_INDEPENDENT = 0, H5FD_MPIO_COLLECTIVE } H5FD_mpio_xfer_t; typedef enum H5FD_mpio_chunk_opt_t { H5FD_MPIO_CHUNK_DEFAULT = 0, H5FD_MPIO_CHUNK_ONE_IO, H5FD_MPIO_CHUNK_MULTI_IO } H5FD_mpio_chunk_opt_t; typedef enum H5FD_mpio_collective_opt_t { H5FD_MPIO_COLLECTIVE_IO = 0, H5FD_MPIO_INDIVIDUAL_IO } H5FD_mpio_collective_opt_t; # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDmpio.h" 1 # 43 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDmpio.h" extern __attribute__ ((visibility("default"))) hbool_t H5FD_mpi_opt_types_g; __attribute__ ((visibility("default"))) hid_t H5FD_mpio_init(void); __attribute__ ((visibility("default"))) void H5FD_mpio_term(void); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_mpio(hid_t fapl_id, MPI_Comm comm, MPI_Info info); __attribute__ ((visibility("default"))) herr_t H5Pget_fapl_mpio(hid_t fapl_id, MPI_Comm *comm , MPI_Info *info ); __attribute__ ((visibility("default"))) herr_t H5Pset_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode); __attribute__ ((visibility("default"))) herr_t H5Pget_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t *xfer_mode ); __attribute__ ((visibility("default"))) herr_t H5Pset_dxpl_mpio_collective_opt(hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mode); __attribute__ ((visibility("default"))) herr_t H5Pset_dxpl_mpio_chunk_opt(hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode); __attribute__ ((visibility("default"))) herr_t H5Pset_dxpl_mpio_chunk_opt_num(hid_t dxpl_id, unsigned num_chunk_per_proc); __attribute__ ((visibility("default"))) herr_t H5Pset_dxpl_mpio_chunk_opt_ratio(hid_t dxpl_id, unsigned percent_num_proc_per_chunk); # 60 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDmpi.h" 2 # 48 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDmulti.h" 1 # 34 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDmulti.h" __attribute__ ((visibility("default"))) hid_t H5FD_multi_init(void); __attribute__ ((visibility("default"))) void H5FD_multi_term(void); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_multi(hid_t fapl_id, const H5FD_mem_t *memb_map, const hid_t *memb_fapl, const char * const *memb_name, const haddr_t *memb_addr, hbool_t relax); __attribute__ ((visibility("default"))) herr_t H5Pget_fapl_multi(hid_t fapl_id, H5FD_mem_t *memb_map , hid_t *memb_fapl , char **memb_name , haddr_t *memb_addr , hbool_t *relax ); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_split(hid_t fapl, const char *meta_ext, hid_t meta_plist_id, const char *raw_ext, hid_t raw_plist_id); # 49 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDsec2.h" 1 # 33 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDsec2.h" __attribute__ ((visibility("default"))) hid_t H5FD_sec2_init(void); __attribute__ ((visibility("default"))) void H5FD_sec2_term(void); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_sec2(hid_t fapl_id); # 50 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDstdio.h" 1 # 33 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDstdio.h" __attribute__ ((visibility("default"))) hid_t H5FD_stdio_init(void); __attribute__ ((visibility("default"))) void H5FD_stdio_term(void); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_stdio(hid_t fapl_id); # 51 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 1 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDdirect.h" 1 # 44 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/H5FDdirect.h" __attribute__ ((visibility("default"))) hid_t H5FD_direct_init(void); __attribute__ ((visibility("default"))) void H5FD_direct_term(void); __attribute__ ((visibility("default"))) herr_t H5Pset_fapl_direct(hid_t fapl_id, size_t alignment, size_t block_size, size_t cbuf_size); __attribute__ ((visibility("default"))) herr_t H5Pget_fapl_direct(hid_t fapl_id, size_t *boundary , size_t *block_size , size_t *cbuf_size ); # 55 "/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include/hdf5.h" 2 # 3 "/tmp/petsc-6utHXg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['hdf5.h'] in ['/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include', '/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib'] Popping language C Checking for functions [H5Pset_fapl_mpio] in library ['/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char H5Pset_fapl_mpio(); static void _check_H5Pset_fapl_mpio() { H5Pset_fapl_mpio(); } int main() { _check_H5Pset_fapl_mpio();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBHDF5HL_FORTRAN" to "1" Defined "HAVE_LIBHDF5_FORTRAN" to "1" Defined "HAVE_LIBHDF5_HL" to "1" Defined "HAVE_LIBHDF5" to "1" Popping language C Defined "HAVE_H5PSET_FAPL_MPIO" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.hdf5(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:684) TESTING: checkSharedLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:684) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf-cxx(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.netcdf-cxx(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/scalarTypes.py:37) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-6utHXg/PETSc.options.scalarTypes Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_ISNORMAL" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_ISNAN" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_ISINF" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ‘_isnan’ [-Wimplicit-function-declaration] double b = 2.0;int a = _isnan(b); ^ /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0;int a = _isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o: In function `main': conftest.c:(.text+0x29): undefined reference to `_isnan' collect2: error: ld returned 1 exit status Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ‘_finite’ [-Wimplicit-function-declaration] double b = 2.0;int a = _finite(b); ^ /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0;int a = _finite(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/PETSc.options.scalarTypes/conftest.o: In function `main': conftest.c:(.text+0x29): undefined reference to `_finite' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/options/scalarTypes.py:77) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:77) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.viennacl(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST locateCMake from config.packages.cmake(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/cmake.py:32) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:32) Looking for default CMake executable Checking for program /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/cmake...not found Checking for program /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cmake...found Defined make macro "CMAKE" to "/gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cmake" ================================================================================ TEST alternateConfigureLibrary from config.packages.metis(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pragmatic(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.parmetis(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Zoltan(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fblaslapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:337) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:337) Looking for BLAS/LAPACK in user specified directory: /opt/intel/mkl Files and directorys in that directory: ['benchmarks', 'include', 'bin', 'lib', 'examples', 'interfaces', 'tests', 'tools'] ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (HPUX) ================================================================================ TEST checkLib from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:104) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:104) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/opt/intel/mkl/libveclib.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lveclib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lveclib collect2: error: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/mkl/libveclib.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lveclib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lveclib collect2: error: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/mkl/libveclib.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lveclib -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lveclib collect2: error: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (F2C) ================================================================================ TEST checkLib from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:104) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:104) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/opt/intel/mkl/libf2cblas.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lf2cblas -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lf2cblas collect2: error: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/mkl/libf2cblas.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lf2cblas -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lf2cblas collect2: error: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/mkl/libf2cblas.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lf2cblas -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lf2cblas collect2: error: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:104) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:104) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/opt/intel/mkl/libfblas.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lfblas -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfblas collect2: error: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/mkl/libfblas.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lfblas -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfblas collect2: error: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/mkl/libfblas.a'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lfblas -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfblas collect2: error: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MATLAB [ILP64] MKL Linux lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:104) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:104) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/opt/intel/mkl/bin/glnxa64/mkl.so', '/opt/intel/mkl/sys/os/glnxa64/libiomp5.so', 'pthread'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o /opt/intel/mkl/bin/glnxa64/mkl.so -Wl,-rpath,/opt/intel/mkl/sys/os/glnxa64 -L/opt/intel/mkl/sys/os/glnxa64 -liomp5 -lpthread -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: gcc: error: /opt/intel/mkl/bin/glnxa64/mkl.so: No such file or directory Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/mkl/bin/glnxa64/mkl.so', '/opt/intel/mkl/sys/os/glnxa64/libiomp5.so', 'pthread'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o /opt/intel/mkl/bin/glnxa64/mkl.so -Wl,-rpath,/opt/intel/mkl/sys/os/glnxa64 -L/opt/intel/mkl/sys/os/glnxa64 -liomp5 -lpthread -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: gcc: error: /opt/intel/mkl/bin/glnxa64/mkl.so: No such file or directory Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/mkl/bin/glnxa64/mkl.so', '/opt/intel/mkl/sys/os/glnxa64/libiomp5.so', 'pthread'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o /opt/intel/mkl/bin/glnxa64/mkl.so -Wl,-rpath,/opt/intel/mkl/sys/os/glnxa64 -L/opt/intel/mkl/sys/os/glnxa64 -liomp5 -lpthread -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: gcc: error: /opt/intel/mkl/bin/glnxa64/mkl.so: No such file or directory Popping language C MKL Path not found.. skipping: /opt/intel/mkl/lib/32 ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL11/12 Linux32 ================================================================================ TEST checkLib from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:104) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:104) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/opt/intel/mkl/lib/ia32/libmkl_intel.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/ia32 -L/opt/intel/mkl/lib/ia32 -lmkl_intel -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: skipping incompatible /opt/intel/mkl/lib/ia32/libmkl_intel.so when searching for -lmkl_intel /usr/bin/ld: skipping incompatible /opt/intel/mkl/lib/ia32/libmkl_intel.a when searching for -lmkl_intel /usr/bin/ld: cannot find -lmkl_intel collect2: error: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/mkl/lib/ia32/libmkl_intel.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/ia32 -L/opt/intel/mkl/lib/ia32 -lmkl_intel -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: skipping incompatible /opt/intel/mkl/lib/ia32/libmkl_intel.so when searching for -lmkl_intel /usr/bin/ld: skipping incompatible /opt/intel/mkl/lib/ia32/libmkl_intel.a when searching for -lmkl_intel /usr/bin/ld: cannot find -lmkl_intel collect2: error: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/mkl/lib/ia32/libmkl_intel.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/ia32 -L/opt/intel/mkl/lib/ia32 -lmkl_intel -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: skipping incompatible /opt/intel/mkl/lib/ia32/libmkl_intel.so when searching for -lmkl_intel /usr/bin/ld: skipping incompatible /opt/intel/mkl/lib/ia32/libmkl_intel.a when searching for -lmkl_intel /usr/bin/ld: cannot find -lmkl_intel collect2: error: ld returned 1 exit status Popping language C MKL Path not found.. skipping: /opt/intel/mkl/32 MKL Path not found.. skipping: /opt/intel/mkl/ia32 ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL11/12 Linux32 ================================================================================ TEST checkLib from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:104) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:104) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/opt/intel/mkl/libmkl_intel.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lmkl_intel -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lmkl_intel collect2: error: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/mkl/libmkl_intel.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lmkl_intel -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lmkl_intel collect2: error: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/mkl/libmkl_intel.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl -L/opt/intel/mkl -lmkl_intel -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lmkl_intel collect2: error: ld returned 1 exit status Popping language C MKL Path not found.. skipping: /opt/intel/mkl/lib/64 MKL Path not found.. skipping: /opt/intel/mkl/lib/ia64 MKL Path not found.. skipping: /opt/intel/mkl/lib/em64t ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL11/12 Linux64 ================================================================================ TEST checkLib from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:104) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:104) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/opt/intel/mkl/lib/intel64/libmkl_intel_lp64.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBM" to "1" Popping language C Checking for functions [dgetrs_] in library ['/opt/intel/mkl/lib/intel64/libmkl_intel_lp64.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBM" to "1" Popping language C Checking for functions [dgeev_] in library ['/opt/intel/mkl/lib/intel64/libmkl_intel_lp64.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBM" to "1" Popping language C Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST check64BitBLASIndices from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:484) TESTING: check64BitBLASIndices from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:484) Check for and use 64bit integer blas ================================================================================ TEST checkESSL from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:400) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:400) Check for the IBM ESSL library Checking for functions [iessl] in library ['/opt/intel/mkl/lib/intel64/libmkl_intel_lp64.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_iessl': conftest.c:(.text+0xa): undefined reference to `iessl' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:416) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:416) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['/opt/intel/mkl/lib/intel64/libmkl_intel_lp64.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_ipessl': conftest.c:(.text+0xa): undefined reference to `ipessl' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMKL from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:408) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:408) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['/opt/intel/mkl/lib/intel64/libmkl_intel_lp64.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBM" to "1" Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:442) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:442) Check for missing LAPACK routines Checking for functions [dtrsen_ dgerfs_ dgges_ dtgsen_ dgesvd_ dgetrf_ dgetrs_ dgeev_ dgelss_ dsyev_ dsyevx_ dsygv_ dsygvx_ dpotrf_ dpotrs_ dstebz_ dpttrf_ dpttrs_ dstein_ dorgqr_ dgeqrf_ dgesv_ dhseqr_ dsteqr_] in library ['/opt/intel/mkl/lib/intel64/libmkl_intel_lp64.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm'] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dgesvd_(); static void _check_dgesvd_() { dgesvd_(); } char dgetrf_(); static void _check_dgetrf_() { dgetrf_(); } char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } char dgeev_(); static void _check_dgeev_() { dgeev_(); } char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dsyev_(); static void _check_dsyev_() { dsyev_(); } char dsyevx_(); static void _check_dsyevx_() { dsyevx_(); } char dsygv_(); static void _check_dsygv_() { dsygv_(); } char dsygvx_(); static void _check_dsygvx_() { dsygvx_(); } char dpotrf_(); static void _check_dpotrf_() { dpotrf_(); } char dpotrs_(); static void _check_dpotrs_() { dpotrs_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dpttrf_(); static void _check_dpttrf_() { dpttrf_(); } char dpttrs_(); static void _check_dpttrs_() { dpttrs_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dgeqrf_(); static void _check_dgeqrf_() { dgeqrf_(); } char dgesv_(); static void _check_dgesv_() { dgesv_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } int main() { _check_dtrsen_(); _check_dgerfs_(); _check_dgges_(); _check_dtgsen_(); _check_dgesvd_(); _check_dgetrf_(); _check_dgetrs_(); _check_dgeev_(); _check_dgelss_(); _check_dsyev_(); _check_dsyevx_(); _check_dsygv_(); _check_dsygvx_(); _check_dpotrf_(); _check_dpotrs_(); _check_dstebz_(); _check_dpttrf_(); _check_dpttrs_(); _check_dstein_(); _check_dorgqr_(); _check_dgeqrf_(); _check_dgesv_(); _check_dhseqr_(); _check_dsteqr_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBM" to "1" Popping language C ================================================================================ TEST checklsame from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:457) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:457) Do the BLAS/LAPACK libraries have a valid lsame() function with correction binding. Lion and xcode 4.2 do not Checking for functions [lsame_] in library ['/opt/intel/mkl/lib/intel64/libmkl_intel_lp64.a', 'mkl_sequential', 'mkl_core', 'pthread', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBMPI_USEMPIF08" to "1" Defined "HAVE_LIBMPI_USEMPI_IGNORE_TKR" to "1" Defined "HAVE_LIBMPI_MPIFH" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBQUADMATH" to "1" Defined "HAVE_LIBM" to "1" Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.setCompilers/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.setCompilers/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.setCompilers/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl ================================================================================ TEST checksdotreturnsdouble from config.packages.BlasLapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/packages/BlasLapack.py:519) TESTING: checksdotreturnsdouble from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:519) Determines if BLAS sdot routine returns a float or a double Checking if sdot() returns a float or a double Pushing language C All intermediate test results are stored in /tmp/petsc-6utHXg/config.packages.BlasLapack Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *output = fopen("runtimetestoutput","w"); extern float sdot_(int*,float*,int *,float*,int*); float x1[1] = {3.0}; int one1 = 1; float sdotresult = sdot_(&one1,x1,&one1,x1,&one1); fprintf(output, " '--known-sdot-returns-double=%d',\n",(sdotresult != 9.0)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest Executing: /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest Popping language C Checking if snrm() returns a float or a double Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *output = fopen("runtimetestoutput","w"); extern float snrm2_(int*,float*,int*); float x2[1] = {3.0}; int one2 = 1; float normresult = snrm2_(&one2,x2,&one2); fprintf(output, " '--known-snrm2-returns-double=%d',\n",(normresult != 3.0)); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest.o -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Testing executable /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest Executing: /tmp/petsc-6utHXg/config.packages.BlasLapack/conftest Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.sundials(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.sundials(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.spai(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pARMS(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ml(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_cpardiso(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.elemental(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.Regression(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Regression.py:33) TESTING: configureRegression from PETSc.Regression(config/PETSc/Regression.py:33) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to "C C_NotSingle C_X Fortran Fortran_NotSingle F90_NotSingle Fortran_NoComplex_NotSingle C_NoComplex_NotSingle HDF5 Cxx F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex DOUBLEINT32" ================================================================================ TEST alternateConfigureLibrary from config.packages.hypre(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_pardiso(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_MT(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.SuperLU_MT(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_DIST(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuiteSparse(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PaStiX(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scalapack(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MUMPS(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Trilinos(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chombo(/gpfs/rrcfd/rruk-students/apps/petsc/config/BuildSystem/config/package.py:688) TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:688) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:774) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:774) All intermediate test results are stored in /tmp/petsc-6utHXg/PETSc.Configure Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:4:15: error: ‘RTLD_DEFAULT’ undeclared here (not in a function) void *ptr = RTLD_DEFAULT; ^ Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:624) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:624) Sees if there are any prefetch functions supported Executing: uname -s stdout: Linux Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" Popping language C ================================================================================ TEST configureUnused from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:685) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:685) Sees if __attribute((unused)) is supported Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:7:5: warning: unused variable ‘j’ [-Wunused-variable] int j = myfunc(&i); ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "UNUSED" to "__attribute((unused))" Popping language C ================================================================================ TEST configureDeprecated from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:703) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:703) Check if __attribute((deprecated)) is supported Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:3:38: warning: ‘myfunc’ defined but not used [-Wunused-function] __attribute((deprecated)) static int myfunc(void) { return 1;} ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED(why)" to "__attribute((deprecated))" Popping language C ================================================================================ TEST configureIsatty from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:697) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:697) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ================================================================================ TEST configureExpect from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:723) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:723) Sees if the __builtin_expect directive is supported Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" Popping language C ================================================================================ TEST configureFunctionName from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:730) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:730) Sees if the compiler supports __func__ or a variant. Falls back on __FUNCT__ which PETSc source defines, but most users do not, thus stack traces through user code are better when the compiler's variant is used. Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language C Defined "FUNCTION_NAME_C" to "__func__" Pushing language Cxx Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fopenmp -fPIC /tmp/petsc-6utHXg/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language CXX Popping language CXX Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -o /tmp/petsc-6utHXg/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Popping language Cxx Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:752) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:752) Determine what to use for uintptr_t Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.libraries -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:6:18: warning: unused variable ‘i’ [-Wunused-variable] int x; uintptr_t i = (uintptr_t)&x;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" Popping language C ================================================================================ TEST configureSolaris from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:779) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:779) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:792) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:792) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:798) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:798) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetComputerName] in library ['kernel32'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['advapi32'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['User32.lib'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['user32'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for type: int32_t Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.types/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/config.types/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:6:7: warning: unused variable ‘u’ [-Wunused-variable] uid_t u; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:8:5: warning: unused variable ‘a’ [-Wunused-variable] int a=R_OK; ^ Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:3:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:3:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/gpfs/rrcfd/rruk-students/apps/petsc"" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:868) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:868) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Linux ================================================================================ TEST configureDefaultArch from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:884) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:884) ================================================================================ TEST configureScript from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:901) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:901) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:938) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:938) Setup the directories for installation Defined make rule "shared_install" with dependencies "" and code ['-@echo "Now to check if the libraries are working do:"', '-@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:950) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:950) ================================================================================ TEST configureFortranFlush from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:955) TESTING: configureFortranFlush from PETSc.Configure(config/PETSc/Configure.py:955) Checking for functions [flush_] in library [''] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush_(); static void _check_flush_() { flush_(); } int main() { _check_flush_();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_flush_': conftest.c:(.text+0xa): undefined reference to `flush_' collect2: error: ld returned 1 exit status Popping language C Checking for functions [flush__] in library [''] ['-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-lm', '-Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64', '-Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/config.libraries/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush__(); static void _check_flush__() { flush__(); } int main() { _check_flush__();; return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/config.libraries/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lgfortran -lm -lquadmath -lm -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-6utHXg/config.libraries/conftest.o: In function `_check_flush__': conftest.c:(.text+0xa): undefined reference to `flush__' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST configureAtoll from PETSc.Configure(/gpfs/rrcfd/rruk-students/apps/petsc/config/PETSc/Configure.py:680) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:680) Checks if atoll exists Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-6utHXg/PETSc.Configure/conftest.c:7:6: warning: unused variable ‘v’ [-Wunused-variable] long v = atoll("25"); ^ Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -o /tmp/petsc-6utHXg/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl Defined "HAVE_ATOLL" to "1" Defined make rule "remote" with dependencies "" and code [] Defined make rule "remoteclean" with dependencies "" and code [] Pushing language C Defined make macro "CC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp " Popping language C Pushing language Cxx Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fopenmp -fPIC " Popping language Cxx Defined make macro "CPP_FLAGS" to "" Pushing language C Defined make macro "PCC" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc" Defined make macro "PCC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp" Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -V Defined make macro "FC_LINKER" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp" Popping language FC Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Pushing language C Defined make macro "SL_LINKER" to "/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Popping language C Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Executing: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -o /tmp/petsc-6utHXg/PETSc.Configure/conftest.o -I/tmp/petsc-6utHXg/config.compilers -I/tmp/petsc-6utHXg/config.utilities.closure -I/tmp/petsc-6utHXg/config.headers -I/tmp/petsc-6utHXg/config.utilities.cacheDetails -I/tmp/petsc-6utHXg/config.atomics -I/tmp/petsc-6utHXg/config.functions -I/tmp/petsc-6utHXg/config.utilities.featureTestMacros -I/tmp/petsc-6utHXg/config.utilities.missing -I/tmp/petsc-6utHXg/config.packages.MPI -I/tmp/petsc-6utHXg/config.packages.pthread -I/tmp/petsc-6utHXg/config.setCompilers -I/tmp/petsc-6utHXg/PETSc.options.scalarTypes -I/tmp/petsc-6utHXg/config.packages.BlasLapack -I/tmp/petsc-6utHXg/PETSc.Configure -I/tmp/petsc-6utHXg/config.types -I/tmp/petsc-6utHXg/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp /tmp/petsc-6utHXg/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_HDF5" to "1" Defined make macro "HDF5_LIB" to "-Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5" Defined make macro "HDF5_INCLUDE" to "-I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-lX11" Defined make macro "X_INCLUDE" to "" Defined "HAVE_OPENMP" to "1" Defined make macro "OPENMP_LIB" to "" Defined make macro "OPENMP_INCLUDE" to "" Defined "HAVE_OPENMP" to "1" Defined make macro "OPENMP_LIB" to "" Defined make macro "OPENMP_INCLUDE" to "" Defined "HAVE_CGNS" to "1" Defined make macro "CGNS_LIB" to "-Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5" Defined make macro "CGNS_INCLUDE" to "-I/gpfs/rrcfd/rruk-students/apps/CGNS/include" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined "HAVE_SSL" to "1" Defined make macro "SSL_LIB" to "-lssl -lcrypto" Defined make macro "SSL_INCLUDE" to "" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib -lpetsc -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5 -lssl -lcrypto -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl " Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5 -lssl -lcrypto -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl " Defined make macro "PETSC_CC_INCLUDES" to "-I/gpfs/rrcfd/rruk-students/apps/petsc/include -I/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/include -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include -I/gpfs/rrcfd/rruk-students/apps/CGNS/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include" Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "PETSC_FC_INCLUDES" to "-I/gpfs/rrcfd/rruk-students/apps/petsc/include -I/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/include -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include -I/gpfs/rrcfd/rruk-students/apps/CGNS/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include" Defined make macro "DESTDIR" to "/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug" Defined "LIB_DIR" to ""/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--with-blas-lapack-dir=/opt/intel/mkl/ --with-mpi-dir=/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc --with-openmp=1 --with-hdf5-dir=/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/ --with-cgns-dir=/gpfs/rrcfd/rruk-students/apps/CGNS/ --with-cmake-dir=/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/" Pushing language C Popping language C Pushing language FC Popping language FC Pushing language C Popping language C Pushing language FC Popping language FC Executing: ['/gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cmake', '--version'] stdout: cmake version 3.2.3 CMake suite maintained and supported by Kitware (kitware.com/cmake). Pushing language C Popping language C Pushing language FC Popping language FC Pushing language Cxx Popping language Cxx Contents of initial cache file /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/initial_cache_file.cmake : SET (CMAKE_C_COMPILER /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_C_FLAGS " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp " CACHE STRING "Dummy comment" FORCE) SET (PETSC_CUDA_HOST_FLAGS ,-fPIC,-Wall,-Wwrite-strings,-Wno-strict-aliasing,-Wno-unknown-pragmas,-g3,-fopenmp CACHE STRING "Dummy comment" FORCE) SET (CMAKE_Fortran_COMPILER /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_Fortran_FLAGS " -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_CXX_COMPILER /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_CXX_FLAGS " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fopenmp -fPIC " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_AR /usr/bin/ar CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_RANLIB /usr/bin/ranlib CACHE FILEPATH "Dummy comment" FORCE) Removing: /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/CMakeCache.txt Removing: /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/CMakeFiles/3.2.3 Invoking: ['/gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cmake', '--trace', '--debug-output', '-C/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-linux2-c-debug', '/gpfs/rrcfd/rruk-students/apps/petsc'] Executing: ['/gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cmake', '--trace', '--debug-output', '-C/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-linux2-c-debug', '/gpfs/rrcfd/rruk-students/apps/petsc'] stdout: Running with trace output on. Running with debug output on. loading initial cache file /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/initial_cache_file.cmake -- The C compiler identification is GNU 4.9.2 Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeDetermineCCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Check for working C compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Check for working C compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -- works Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting C compiler ABI info Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting C compiler ABI info - done Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting C compile features Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting C compile features - done Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- The Fortran compiler identification is GNU Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeDetermineFortranCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Check for working Fortran compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestFortranCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Check for working Fortran compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -- works Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestFortranCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting Fortran compiler ABI info Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestFortranCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting Fortran compiler ABI info - done Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestFortranCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Checking whether /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 supports Fortran 90 Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestFortranCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Checking whether /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 supports Fortran 90 -- yes Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestFortranCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- The CXX compiler identification is GNU 4.9.2 Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeDetermineCXXCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Check for working CXX compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCXXCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Check for working CXX compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -- works Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCXXCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting CXX compiler ABI info Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCXXCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting CXX compiler ABI info - done Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCXXCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting CXX compile features Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCXXCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Detecting CXX compile features - done Called from: [2] /gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/share/cmake-3.2/Modules/CMakeTestCXXCompiler.cmake [1] /gpfs/rrcfd/rruk-students/apps/petsc/CMakeLists.txt -- Configuring done -- Generating /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug -- Generating done -- Build files have been written to: /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug CMake configured successfully, using as default build Defined make macro "PETSC_BUILD_USING_CMAKE" to "1" Pushing language C Popping language C Pushing language FC Popping language FC ================================================================================ **** arch-linux2-c-debug/lib/petsc/conf/petscvariables **** MPICXX_SHOW = /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/g++ -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_cxx -lmpi C_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D MPICC_SHOW = /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP FC_DEPFLAGS = -MMD -MP MPIFC_SHOW = gfortran -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -J PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc PETSC_BUILD_USING_CMAKE = 1 CC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp SOWING_LIB = PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_PRECISION = double OPENMP_LIB = FC_FLAGS = -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp BLASLAPACK_LIB = -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} SHLIBS = libpetsc HDF5_INCLUDE = -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include MPI_LIB = SSL_LIB = -lssl -lcrypto PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5 -lssl -lcrypto -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl HDF5_LIB = -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} CC_SUFFIX = o OPENMP_INCLUDE = CGNS_LIB = -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5 CONFIGURE_OPTIONS = --with-blas-lapack-dir=/opt/intel/mkl/ --with-mpi-dir=/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc --with-openmp=1 --with-hdf5-dir=/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/ --with-cgns-dir=/gpfs/rrcfd/rruk-students/apps/CGNS/ --with-cmake-dir=/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/ PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CGNS_INCLUDE = -I/gpfs/rrcfd/rruk-students/apps/CGNS/include PTHREAD_LIB = PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/gpfs/rrcfd/rruk-students/apps/petsc/include -I/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/include -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include -I/gpfs/rrcfd/rruk-students/apps/CGNS/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include CPP_FLAGS = PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = FC_LINKER = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fopenmp -fPIC PETSC_LIB_BASIC = -lpetsc PCC_LINKER_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp SSL_INCLUDE = PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES = -I/gpfs/rrcfd/rruk-students/apps/petsc/include -I/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/include -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include -I/gpfs/rrcfd/rruk-students/apps/CGNS/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include PCC_LINKER = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp PTHREAD_INCLUDE = PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TAO_LIB_BASIC = -lpetsc BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = so PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} DESTDIR = /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug FC_MODULE_FLAG = -I X_LIB = -lX11 X_INCLUDE = PETSC_WITH_EXTERNAL_LIB = -L/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib -lpetsc -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5 -lssl -lcrypto -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl SOWING_INCLUDE = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include FC_SUFFIX = o PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} SHELL = /bin/sh GREP = /bin/grep MV = /bin/mv PYTHON = /usr/bin/python MKDIR = /bin/mkdir -p SEDINPLACE = /bin/sed -i SED = /bin/sed DIFF = /usr/bin/diff -w GZIP = /bin/gzip RM = /bin/rm -f CP = /bin/cp CC_LINKER_SLFLAG = -Wl,-rpath, CC = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc CXX = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx FC = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 CXXCPP = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -E FC_LINKER_SLFLAG = -Wl,-rpath, CPP = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -E AR_LIB_SUFFIX = a LD_SHARED = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc AR = /usr/bin/ar DIR = /gpfs/rrcfd/rruk-students/apps/petsc PETSC_INDEX_SIZE = 32 MAKE_IS_GNUMAKE = 1 MAKE_NP = 7 OMAKE_PRINTDIR = /usr/bin/gmake --print-directory MAKE = /usr/bin/gmake MAKE_PAR_OUT_FLG = OMAKE = /usr/bin/gmake --no-print-directory GIT = git MPIEXEC = /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpiexec CMAKE = /gpfs/rrcfd/rruk-students/home/mleoni/.scripts/cmake PETSC_SCALAR_SIZE = 64 SL_LINKER_FUNCTION = -shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) SONAME_FUNCTION = $(1).so.$(2) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true DOCTEXT = /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/doctext BIB2HTML = /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bib2html PDFLATEX = /gpfs/rrcfd/rruk-students/home/aruohonen/texlive/2015/bin/x86_64-linux/pdflatex BFORT = /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/bfort MAPNAMES = /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/bin/mapnames TEST_RUNS = C C_NotSingle C_X Fortran Fortran_NotSingle F90_NotSingle Fortran_NoComplex_NotSingle C_NoComplex_NotSingle HDF5 Cxx F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex DOUBLEINT32 **** arch-linux2-c-debug/lib/petsc/conf/petscrules **** shared_install: -@echo "Now to check if the libraries are working do:" -@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test" -@echo "=========================================" remoteclean: remote: libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} .F.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.o .f90.o .f95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $< .f.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o .F95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $< shared_arch: shared_linux mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: **** arch-linux2-c-debug/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_UINTPTR_T #define PETSC_UINTPTR_T uintptr_t #endif #ifndef PETSC_HAVE_PTHREAD #define PETSC_HAVE_PTHREAD 1 #endif #ifndef PETSC_HAVE_OPENMP #define PETSC_HAVE_OPENMP 1 #endif #ifndef PETSC_DEPRECATED #define PETSC_DEPRECATED(why) __attribute((deprecated)) #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_HDF5 #define PETSC_HAVE_HDF5 1 #endif #ifndef PETSC_HAVE_SO_REUSEADDR #define PETSC_HAVE_SO_REUSEADDR 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_PREFETCH_HINT_T2 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #endif #ifndef PETSC_PREFETCH_HINT_T0 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #endif #ifndef PETSC_PREFETCH_HINT_T1 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_DIR #define PETSC_DIR "/gpfs/rrcfd/rruk-students/apps/petsc" #endif #ifndef PETSC_HAVE_SSL #define PETSC_HAVE_SSL 1 #endif #ifndef PETSC_HAVE_X #define PETSC_HAVE_X 1 #endif #ifndef PETSC_LIB_DIR #define PETSC_LIB_DIR "/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib" #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_USE_ISATTY #define PETSC_USE_ISATTY 1 #endif #ifndef PETSC_HAVE_SOWING #define PETSC_HAVE_SOWING 1 #endif #ifndef PETSC_SLSUFFIX #define PETSC_SLSUFFIX "so" #endif #ifndef PETSC_FUNCTION_NAME_CXX #define PETSC_FUNCTION_NAME_CXX __func__ #endif #ifndef PETSC_HAVE_ATOLL #define PETSC_HAVE_ATOLL 1 #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_UNUSED #define PETSC_UNUSED __attribute((unused)) #endif #ifndef PETSC_HAVE_CGNS #define PETSC_HAVE_CGNS 1 #endif #ifndef PETSC_FUNCTION_NAME_C #define PETSC_FUNCTION_NAME_C __func__ #endif #ifndef PETSC_USE_SINGLE_LIBRARY #define PETSC_USE_SINGLE_LIBRARY 1 #endif #ifndef PETSC_HAVE_BUILTIN_EXPECT #define PETSC_HAVE_BUILTIN_EXPECT 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC_HAVE_XMMINTRIN_H #define PETSC_HAVE_XMMINTRIN_H 1 #endif #ifndef PETSC_PREFETCH_HINT_NTA #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #endif #ifndef PETSC_Prefetch #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBZ #define PETSC_HAVE_LIBZ 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBGFORTRAN #define PETSC_HAVE_LIBGFORTRAN 1 #endif #ifndef PETSC_HAVE_LIBCRYPTO #define PETSC_HAVE_LIBCRYPTO 1 #endif #ifndef PETSC_HAVE_LIBHDF5HL_FORTRAN #define PETSC_HAVE_LIBHDF5HL_FORTRAN 1 #endif #ifndef PETSC_HAVE_LIBMPI_USEMPIF08 #define PETSC_HAVE_LIBMPI_USEMPIF08 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBMKL_INTEL_LP64 #define PETSC_HAVE_LIBMKL_INTEL_LP64 1 #endif #ifndef PETSC_HAVE_LIBPTHREAD #define PETSC_HAVE_LIBPTHREAD 1 #endif #ifndef PETSC_HAVE_LIBMPI_MPIFH #define PETSC_HAVE_LIBMPI_MPIFH 1 #endif #ifndef PETSC_HAVE_LIBCGNS #define PETSC_HAVE_LIBCGNS 1 #endif #ifndef PETSC_HAVE_LIBHDF5 #define PETSC_HAVE_LIBHDF5 1 #endif #ifndef PETSC_HAVE_LIBMPI_USEMPI_IGNORE_TKR #define PETSC_HAVE_LIBMPI_USEMPI_IGNORE_TKR 1 #endif #ifndef PETSC_HAVE_LIBMKL_SEQUENTIAL #define PETSC_HAVE_LIBMKL_SEQUENTIAL 1 #endif #ifndef PETSC_HAVE_LIBSSL #define PETSC_HAVE_LIBSSL 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LOG2 #define PETSC_HAVE_LOG2 1 #endif #ifndef PETSC_HAVE_LIBHDF5_HL #define PETSC_HAVE_LIBHDF5_HL 1 #endif #ifndef PETSC_HAVE_LIBMKL_CORE #define PETSC_HAVE_LIBMKL_CORE 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBX11 #define PETSC_HAVE_LIBX11 1 #endif #ifndef PETSC_HAVE_LIBQUADMATH #define PETSC_HAVE_LIBQUADMATH 1 #endif #ifndef PETSC_HAVE_LIBHDF5_FORTRAN #define PETSC_HAVE_LIBHDF5_FORTRAN 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-linux2-c-debug" #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 8 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_BLASLAPACK_UNDERSCORE #define PETSC_BLASLAPACK_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_IALLREDUCE #define PETSC_HAVE_MPI_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_OMPI_MINOR_VERSION #define PETSC_HAVE_OMPI_MINOR_VERSION 8 #endif #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_CONTIGUOUS #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #endif #ifndef PETSC_HAVE_MPI_INT64_T #define PETSC_HAVE_MPI_INT64_T 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_OMPI_MAJOR_VERSION #define PETSC_HAVE_OMPI_MAJOR_VERSION 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_IBARRIER #define PETSC_HAVE_MPI_IBARRIER 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_OMPI_RELEASE_VERSION #define PETSC_HAVE_OMPI_RELEASE_VERSION 6 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_SIZE #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2015-11-08 17:25:16 -0600" #endif #ifndef PETSC_VERSION_BRANCH_GIT #define PETSC_VERSION_BRANCH_GIT "master" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "v3.6.2-1596-g20ebc73" #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_HAVE_ISNORMAL #define PETSC_HAVE_ISNORMAL 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC__DEFAULT_SOURCE #define PETSC__DEFAULT_SOURCE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_HAVE_H5PSET_FAPL_MPIO #define PETSC_HAVE_H5PSET_FAPL_MPIO 1 #endif #ifndef PETSC_HAVE_SCHED_CPU_SET_T #define PETSC_HAVE_SCHED_CPU_SET_T 1 #endif #ifndef PETSC_HAVE_PTHREAD_BARRIER_T #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** arch-linux2-c-debug/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- SOWING: Install : Installed SOWING into /gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-linux2-c-debug in lib/petsc/conf/petscvariables File creation : Created arch-linux2-c-debug/lib/petsc/conf/reconfigure-arch-linux2-c-debug.py for automatic reconfiguration Framework: File creation : Created makefile configure header arch-linux2-c-debug/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-linux2-c-debug/lib/petsc/conf/petscrules File creation : Created configure header arch-linux2-c-debug/include/petscconf.h File creation : Created C specific configure header arch-linux2-c-debug/include/petscfix.h Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Compilers: C Compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp C++ Compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fopenmp -fPIC Fortran Compiler: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp Linkers: Shared linker: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp Dynamic linker: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp make: BLAS/LAPACK: -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm MPI: Includes: -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include cmake: hdf5: Includes: -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include Library: -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 X: Library: -lX11 openmp: cgns: Includes: -I/gpfs/rrcfd/rruk-students/apps/CGNS/include Library: -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5 Arch: pthread: sowing: ssl: Library: -lssl -lcrypto PETSc: PETSC_ARCH: arch-linux2-c-debug PETSC_DIR: /gpfs/rrcfd/rruk-students/apps/petsc Clanguage: C Integer size: 32 Memory alignment: 16 Scalar type: real Precision: double shared libraries: enabled xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with (gnumake build): make PETSC_DIR=/gpfs/rrcfd/rruk-students/apps/petsc PETSC_ARCH=arch-linux2-c-debug all xxx=========================================================================xxx ================================================================================ Finishing Configure Run at Mon Nov 9 12:02:34 2015 ================================================================================