gmake[1]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html ========================================== Starting on login02 at Mon Nov 9 12:06:53 GMT 2015 Machine characteristics: Linux login02 2.6.32-358.el6.x86_64 #1 SMP Tue Jan 29 11:47:41 EST 2013 x86_64 x86_64 x86_64 GNU/Linux ----------------------------------------- Using PETSc directory: /gpfs/rrcfd/rruk-students/apps/petsc Using PETSc arch: arch-linux2-c-debug ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 6 PETSC_VERSION_SUBMINOR 2 PETSC_VERSION_PATCH 0 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --with-blas-lapack-dir=/opt/intel/mkl/ --with-mpi-dir=/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc --with-openmp=1 --with-hdf5-dir=/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/ --with-cgns-dir=/gpfs/rrcfd/rruk-students/apps/CGNS/ --with-cmake-dir=/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/cmake-3.2.3-Linux-x86_64/ Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_UINTPTR_T uintptr_t #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_OPENMP 1 #define PETSC_DEPRECATED(why) __attribute((deprecated)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_MPI 1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_DIR "/gpfs/rrcfd/rruk-students/apps/petsc" #define PETSC_HAVE_SSL 1 #define PETSC_HAVE_X 1 #define PETSC_LIB_DIR "/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib" #define PETSC_HAVE_FORTRAN 1 #define PETSC_USE_ISATTY 1 #define PETSC_HAVE_SOWING 1 #define PETSC_SLSUFFIX "so" #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_UNUSED __attribute((unused)) #define PETSC_HAVE_CGNS 1 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_DIR_SEPARATOR '/' #define PETSC_PATH_SEPARATOR ':' #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBGFORTRAN 1 #define PETSC_HAVE_LIBCRYPTO 1 #define PETSC_HAVE_LIBHDF5HL_FORTRAN 1 #define PETSC_HAVE_LIBMPI_USEMPIF08 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBMKL_INTEL_LP64 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBMPI_MPIFH 1 #define PETSC_HAVE_LIBCGNS 1 #define PETSC_HAVE_LIBHDF5 1 #define PETSC_HAVE_LIBMPI_USEMPI_IGNORE_TKR 1 #define PETSC_HAVE_LIBMKL_SEQUENTIAL 1 #define PETSC_HAVE_LIBSSL 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LIBHDF5_HL 1 #define PETSC_HAVE_LIBMKL_CORE 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_LIBX11 1 #define PETSC_HAVE_LIBQUADMATH 1 #define PETSC_HAVE_LIBHDF5_FORTRAN 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_ARCH "arch-linux2-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 8 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_OMPI_MINOR_VERSION 8 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_OMPI_RELEASE_VERSION 6 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2015-11-08 17:25:16 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.6.2-1596-g20ebc73" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_HAVE_H5PSET_FAPL_MPIO 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 ----------------------------------------- Using C/C++ compile: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc -c -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp -I/gpfs/rrcfd/rruk-students/apps/petsc/include -I/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/include -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include -I/gpfs/rrcfd/rruk-students/apps/CGNS/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include mpicc -show: /gpfs/apps6/compilers/gcc/gcc-4.9.2/bin/gcc -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi Using Fortran compile: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 -c -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp -I/gpfs/rrcfd/rruk-students/apps/petsc/include -I/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/include -I/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/include -I/gpfs/rrcfd/rruk-students/apps/CGNS/include -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include mpif90 -show: gfortran -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include -pthread -I/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath -Wl,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,--enable-new-dtags -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi ----------------------------------------- Using C/C++ linker: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpicc Using C/C++ flags: -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fopenmp Using Fortran linker: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpif90 Using Fortran flags: -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -fopenmp ----------------------------------------- Using libraries: -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib -L/gpfs/rrcfd/rruk-students/apps/petsc/arch-linux2-c-debug/lib -lpetsc -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -L/gpfs/rrcfd/rruk-students/home/mleoni/mylibs/hdf5-1.8.15-patch1/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/gpfs/rrcfd/rruk-students/apps/CGNS/lib -L/gpfs/rrcfd/rruk-students/apps/CGNS/lib -lcgns -lhdf5 -lssl -lcrypto -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -L/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -L/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64 -Wl,-rpath,/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -L/gpfs/apps6/compilers/gcc/gcc-4.9.2/lib -ldl -Wl,-rpath,/gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/lib -lmpi -lgcc_s -lpthread -ldl ------------------------------------------ Using mpiexec: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/bin/mpiexec ========================================== Building PETSc using GNU Make with 7 build threads ========================================== gmake[2]: Entering directory `/gpfs/rrcfd/rruk-students/apps/petsc' Use "/usr/bin/gmake V=1" to see the verbose compile lines. CC arch-linux2-c-debug/obj/src/sys/classes/random/impls/rander48/rander48.o CC arch-linux2-c-debug/obj/src/vec/is/sf/interface/ftn-custom/zsf.o CC arch-linux2-c-debug/obj/src/mat/partition/impls/hierarchical/hierarchical.o CC arch-linux2-c-debug/obj/src/dm/impls/plex/ftn-auto/plexdistributef.o CC arch-linux2-c-debug/obj/src/dm/impls/plex/ftn-auto/plexgmshf.o CC arch-linux2-c-debug/obj/src/dm/impls/plex/ftn-auto/plexindicesf.o CC arch-linux2-c-debug/obj/src/dm/impls/plex/ftn-auto/plexinterpolatef.o /gpfs/rrcfd/rruk-students/apps/petsc/src/dm/impls/plex/ftn-auto/plexdistributef.c: In function ‘dmplexdistributedata_’: /gpfs/rrcfd/rruk-students/apps/petsc/src/dm/impls/plex/ftn-auto/plexdistributef.c:172:15: error: dereferencing pointer to incomplete type MPI_Type_f2c(*(datatype)),originalData, ^ gmake[2]: *** [arch-linux2-c-debug/obj/src/dm/impls/plex/ftn-auto/plexdistributef.o] Error 1 gmake[2]: *** Waiting for unfinished jobs.... /gpfs/rrcfd/rruk-students/apps/petsc/src/dm/impls/plex/ftn-auto/plexgmshf.c: In function ‘dmplexcreategmsh_’: /gpfs/rrcfd/rruk-students/apps/petsc/src/dm/impls/plex/ftn-auto/plexgmshf.c:44:15: warning: passing argument 1 of ‘MPI_Comm_f2c’ makes integer from pointer without a cast MPI_Comm_f2c(*(comm)), ^ In file included from /gpfs/rrcfd/rruk-students/apps/petsc/include/petscsys.h:120:0, from /gpfs/rrcfd/rruk-students/apps/petsc/src/dm/impls/plex/ftn-auto/plexgmshf.c:1: /gpfs/apps6/mpi/openmpi/openmpi-1.8.6-gcc/include/mpi.h:1268:25: note: expected ‘int’ but argument is of type ‘MPI_Comm’ OMPI_DECLSPEC MPI_Comm MPI_Comm_f2c(MPI_Fint comm); ^ gmake[2]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc' gmake[1]: *** [gnumake] Error 2 gmake[1]: Leaving directory `/gpfs/rrcfd/rruk-students/apps/petsc' **************************ERROR************************************* Error during compile, check arch-linux2-c-debug/lib/petsc/conf/make.log Send it and arch-linux2-c-debug/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov ******************************************************************** Finishing at: Mon Nov 9 12:07:02 GMT 2015