Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Thu Jun 4 22:25:53 2015 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --COPTFLAGS="-mp -fast" --CXXOPTFLAGS="-mp -fast" --FOPTFLAGS="-mp -fast" --with-ssl=0 --prefix=/autofs/na3_home1/adams/petsc_master_opt64idx_pgi --download-metis --with-hwloc=0 --download-parmetis --with-cc=cc --with-cxx=CC --with-fc=ftn --with-shared-libraries=0 --known-mpi-shared-libraries=1 --with-x=0 --with-64-bit-indices --with-debugging=0 PETSC_ARCH=arch-titan-opt64idx-pgi PETSC_DIR=/lustre/atlas/scratch/adams/env003/petsc Working directory: /lustre/atlas2/env003/scratch/adams/petsc Machine platform: ('Linux', 'titan-login4', '3.0.101-0.31.1_1.0502.8394-cray_gem_s', '#1 SMP Wed Sep 10 03:56:55 UTC 2014', 'x86_64', 'x86_64') Python version: 2.7.9 (default, Mar 12 2015, 16:47:48) [GCC 4.3.4 [gcc-4_3-branch revision 152973]] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/framework.py:832) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:832) All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S Executing: cd /tmp/scratch/petsc-kMEe3S/config.programs/autoconfdir&&/usr/bin/autoreconf Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/scratch/petsc-kMEe3S/config.programs/sed1" Executing: "/usr/bin/diff" -w "/tmp/scratch/petsc-kMEe3S/config.programs/diff1" "/tmp/scratch/petsc-kMEe3S/config.programs/diff2" ================================================================================ TEST configureMkdir from config.programs(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /ccs/home/adams/git-fat/mkdir...not found Checking for program /opt/cray/llm/default/bin/mkdir...not found Checking for program /opt/cray/llm/default/etc/mkdir...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mkdir...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mkdir...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mkdir...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mkdir...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mkdir...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mkdir...not found Checking for program /ccs/home/adams/git-fat/mkdir...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mkdir...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mkdir...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mkdir...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mkdir...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mkdir...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mkdir...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mkdir...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mkdir...not found Checking for program /sw/xk6/altd/bin/mkdir...not found Checking for program /sw/xk6/site-aprun/bin/mkdir...not found Checking for program /sw/xk6/bin/mkdir...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mkdir...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mkdir...not found Checking for program /opt/cray/atp/1.7.5/bin/mkdir...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mkdir...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mkdir...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mkdir...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mkdir...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mkdir...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mkdir...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mkdir...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mkdir...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mkdir...not found Checking for program /opt/cray/craype/2.2.1/bin/mkdir...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mkdir...not found Checking for program /opt/modules/3.2.6.7/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /ccs/home/adams/git-fat/autoreconf...not found Checking for program /opt/cray/llm/default/bin/autoreconf...not found Checking for program /opt/cray/llm/default/etc/autoreconf...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/autoreconf...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/autoreconf...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/autoreconf...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/autoreconf...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/autoreconf...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/autoreconf...not found Checking for program /ccs/home/adams/git-fat/autoreconf...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/autoreconf...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/autoreconf...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/autoreconf...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/autoreconf...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/autoreconf...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/autoreconf...not found Checking for program /opt/cray/netcdf/4.3.2/bin/autoreconf...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/autoreconf...not found Checking for program /sw/xk6/altd/bin/autoreconf...not found Checking for program /sw/xk6/site-aprun/bin/autoreconf...not found Checking for program /sw/xk6/bin/autoreconf...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/autoreconf...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/autoreconf...not found Checking for program /opt/cray/atp/1.7.5/bin/autoreconf...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/autoreconf...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/autoreconf...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/autoreconf...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/autoreconf...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/autoreconf...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/autoreconf...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/autoreconf...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/autoreconf...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/autoreconf...not found Checking for program /opt/cray/craype/2.2.1/bin/autoreconf...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/autoreconf...not found Checking for program /opt/modules/3.2.6.7/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.programs autoreconf test successful! ================================================================================ TEST configurePrograms from config.programs(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/programs.py:66) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:66) Check for the programs needed to build and run PETSc Checking for program /ccs/home/adams/git-fat/sh...not found Checking for program /opt/cray/llm/default/bin/sh...not found Checking for program /opt/cray/llm/default/etc/sh...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/sh...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/sh...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/sh...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/sh...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/sh...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/sh...not found Checking for program /ccs/home/adams/git-fat/sh...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/sh...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/sh...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/sh...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/sh...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/sh...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/sh...not found Checking for program /opt/cray/netcdf/4.3.2/bin/sh...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/sh...not found Checking for program /sw/xk6/altd/bin/sh...not found Checking for program /sw/xk6/site-aprun/bin/sh...not found Checking for program /sw/xk6/bin/sh...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/sh...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/sh...not found Checking for program /opt/cray/atp/1.7.5/bin/sh...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/sh...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/sh...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/sh...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/sh...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/sh...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/sh...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/sh...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/sh...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/sh...not found Checking for program /opt/cray/craype/2.2.1/bin/sh...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/sh...not found Checking for program /opt/modules/3.2.6.7/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /ccs/home/adams/git-fat/sed...not found Checking for program /opt/cray/llm/default/bin/sed...not found Checking for program /opt/cray/llm/default/etc/sed...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/sed...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/sed...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/sed...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/sed...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/sed...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/sed...not found Checking for program /ccs/home/adams/git-fat/sed...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/sed...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/sed...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/sed...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/sed...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/sed...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/sed...not found Checking for program /opt/cray/netcdf/4.3.2/bin/sed...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/sed...not found Checking for program /sw/xk6/altd/bin/sed...not found Checking for program /sw/xk6/site-aprun/bin/sed...not found Checking for program /sw/xk6/bin/sed...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/sed...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/sed...not found Checking for program /opt/cray/atp/1.7.5/bin/sed...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/sed...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/sed...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/sed...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/sed...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/sed...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/sed...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/sed...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/sed...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/sed...not found Checking for program /opt/cray/craype/2.2.1/bin/sed...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/sed...not found Checking for program /opt/modules/3.2.6.7/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /ccs/home/adams/git-fat/mv...not found Checking for program /opt/cray/llm/default/bin/mv...not found Checking for program /opt/cray/llm/default/etc/mv...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mv...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mv...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mv...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mv...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mv...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mv...not found Checking for program /ccs/home/adams/git-fat/mv...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mv...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mv...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mv...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mv...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mv...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mv...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mv...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mv...not found Checking for program /sw/xk6/altd/bin/mv...not found Checking for program /sw/xk6/site-aprun/bin/mv...not found Checking for program /sw/xk6/bin/mv...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mv...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mv...not found Checking for program /opt/cray/atp/1.7.5/bin/mv...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mv...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mv...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mv...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mv...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mv...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mv...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mv...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mv...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mv...not found Checking for program /opt/cray/craype/2.2.1/bin/mv...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mv...not found Checking for program /opt/modules/3.2.6.7/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /ccs/home/adams/git-fat/cp...not found Checking for program /opt/cray/llm/default/bin/cp...not found Checking for program /opt/cray/llm/default/etc/cp...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/cp...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/cp...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/cp...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/cp...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/cp...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/cp...not found Checking for program /ccs/home/adams/git-fat/cp...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/cp...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/cp...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/cp...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/cp...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/cp...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/cp...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cp...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cp...not found Checking for program /sw/xk6/altd/bin/cp...not found Checking for program /sw/xk6/site-aprun/bin/cp...not found Checking for program /sw/xk6/bin/cp...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/cp...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/cp...not found Checking for program /opt/cray/atp/1.7.5/bin/cp...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/cp...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/cp...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/cp...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/cp...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/cp...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/cp...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/cp...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/cp...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/cp...not found Checking for program /opt/cray/craype/2.2.1/bin/cp...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/cp...not found Checking for program /opt/modules/3.2.6.7/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /ccs/home/adams/git-fat/grep...not found Checking for program /opt/cray/llm/default/bin/grep...not found Checking for program /opt/cray/llm/default/etc/grep...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/grep...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/grep...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/grep...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/grep...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/grep...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/grep...not found Checking for program /ccs/home/adams/git-fat/grep...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/grep...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/grep...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/grep...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/grep...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/grep...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/grep...not found Checking for program /opt/cray/netcdf/4.3.2/bin/grep...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/grep...not found Checking for program /sw/xk6/altd/bin/grep...not found Checking for program /sw/xk6/site-aprun/bin/grep...not found Checking for program /sw/xk6/bin/grep...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/grep...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/grep...not found Checking for program /opt/cray/atp/1.7.5/bin/grep...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/grep...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/grep...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/grep...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/grep...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/grep...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/grep...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/grep...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/grep...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/grep...not found Checking for program /opt/cray/craype/2.2.1/bin/grep...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/grep...not found Checking for program /opt/modules/3.2.6.7/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /ccs/home/adams/git-fat/rm...not found Checking for program /opt/cray/llm/default/bin/rm...not found Checking for program /opt/cray/llm/default/etc/rm...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/rm...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/rm...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/rm...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/rm...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/rm...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/rm...not found Checking for program /ccs/home/adams/git-fat/rm...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/rm...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/rm...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/rm...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/rm...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/rm...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/rm...not found Checking for program /opt/cray/netcdf/4.3.2/bin/rm...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/rm...not found Checking for program /sw/xk6/altd/bin/rm...not found Checking for program /sw/xk6/site-aprun/bin/rm...not found Checking for program /sw/xk6/bin/rm...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/rm...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/rm...not found Checking for program /opt/cray/atp/1.7.5/bin/rm...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/rm...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/rm...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/rm...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/rm...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/rm...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/rm...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/rm...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/rm...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/rm...not found Checking for program /opt/cray/craype/2.2.1/bin/rm...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/rm...not found Checking for program /opt/modules/3.2.6.7/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /ccs/home/adams/git-fat/diff...not found Checking for program /opt/cray/llm/default/bin/diff...not found Checking for program /opt/cray/llm/default/etc/diff...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/diff...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/diff...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/diff...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/diff...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/diff...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/diff...not found Checking for program /ccs/home/adams/git-fat/diff...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/diff...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/diff...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/diff...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/diff...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/diff...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/diff...not found Checking for program /opt/cray/netcdf/4.3.2/bin/diff...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/diff...not found Checking for program /sw/xk6/altd/bin/diff...not found Checking for program /sw/xk6/site-aprun/bin/diff...not found Checking for program /sw/xk6/bin/diff...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/diff...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/diff...not found Checking for program /opt/cray/atp/1.7.5/bin/diff...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/diff...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/diff...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/diff...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/diff...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/diff...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/diff...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/diff...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/diff...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/diff...not found Checking for program /opt/cray/craype/2.2.1/bin/diff...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/diff...not found Checking for program /opt/modules/3.2.6.7/bin/diff...not found Checking for program /usr/bin/diff...found Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /ccs/home/adams/ps...not found Checking for program /ccs/home/adams/git-fat/gzip...not found Checking for program /opt/cray/llm/default/bin/gzip...not found Checking for program /opt/cray/llm/default/etc/gzip...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/gzip...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/gzip...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/gzip...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/gzip...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/gzip...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/gzip...not found Checking for program /ccs/home/adams/git-fat/gzip...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/gzip...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/gzip...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/gzip...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/gzip...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/gzip...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/gzip...not found Checking for program /opt/cray/netcdf/4.3.2/bin/gzip...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/gzip...not found Checking for program /sw/xk6/altd/bin/gzip...not found Checking for program /sw/xk6/site-aprun/bin/gzip...not found Checking for program /sw/xk6/bin/gzip...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/gzip...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/gzip...not found Checking for program /opt/cray/atp/1.7.5/bin/gzip...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/gzip...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/gzip...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/gzip...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/gzip...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/gzip...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/gzip...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/gzip...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/gzip...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/gzip...not found Checking for program /opt/cray/craype/2.2.1/bin/gzip...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/gzip...not found Checking for program /opt/modules/3.2.6.7/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/python" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 5 #define PETSC_VERSION_SUBMINOR 4 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/lustre/atlas/scratch/adams/env003/petsc" C language is C ================================================================================ TEST configureCLanguage from PETSc.options.languages(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler Defined "CLANGUAGE_C" to "1" Executing: git --version stdout: git version 2.3.2 ================================================================================ TEST configureGit from config.sourceControl(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /ccs/home/adams/git-fat/git...not found Checking for program /opt/cray/llm/default/bin/git...not found Checking for program /opt/cray/llm/default/etc/git...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/git...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/git...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/git...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/git...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/git...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/git...not found Checking for program /ccs/home/adams/git-fat/git...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/git...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/git...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/git...found Defined make macro "GIT" to "git" ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /ccs/home/adams/git-fat/gdb...not found Checking for program /opt/cray/llm/default/bin/gdb...not found Checking for program /opt/cray/llm/default/etc/gdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/gdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/gdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/gdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/gdb...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/gdb...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/gdb...not found Checking for program /ccs/home/adams/git-fat/gdb...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/gdb...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/gdb...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/gdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/gdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/gdb...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/gdb...not found Checking for program /opt/cray/netcdf/4.3.2/bin/gdb...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/gdb...not found Checking for program /sw/xk6/altd/bin/gdb...not found Checking for program /sw/xk6/site-aprun/bin/gdb...not found Checking for program /sw/xk6/bin/gdb...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/gdb...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/gdb...not found Checking for program /opt/cray/atp/1.7.5/bin/gdb...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/gdb...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/gdb...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/gdb...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/gdb...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/gdb...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/gdb...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/gdb...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/gdb...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/gdb...not found Checking for program /opt/cray/craype/2.2.1/bin/gdb...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/gdb...not found Checking for program /opt/modules/3.2.6.7/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /ccs/home/adams/git-fat/dbx...not found Checking for program /opt/cray/llm/default/bin/dbx...not found Checking for program /opt/cray/llm/default/etc/dbx...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/dbx...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/dbx...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/dbx...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/dbx...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/dbx...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/dbx...not found Checking for program /ccs/home/adams/git-fat/dbx...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/dbx...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/dbx...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/dbx...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/dbx...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/dbx...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/dbx...not found Checking for program /opt/cray/netcdf/4.3.2/bin/dbx...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/dbx...not found Checking for program /sw/xk6/altd/bin/dbx...not found Checking for program /sw/xk6/site-aprun/bin/dbx...not found Checking for program /sw/xk6/bin/dbx...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/dbx...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/dbx...not found Checking for program /opt/cray/atp/1.7.5/bin/dbx...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/dbx...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/dbx...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/dbx...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/dbx...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/dbx...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/dbx...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/dbx...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/dbx...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/dbx...not found Checking for program /opt/cray/craype/2.2.1/bin/dbx...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/dbx...not found Checking for program /opt/modules/3.2.6.7/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/X11/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /opt/bin/dbx...not found Checking for program /usr/lib/mit/bin/dbx...not found Checking for program /usr/lib/mit/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /usr/lib/qt3/bin/dbx...not found Checking for program /opt/cray/bin/dbx...not found Checking for program /opt/public/bin/dbx...not found Checking for program /opt/bin/dbx...not found Checking for program /opt/public/bin/dbx...not found Checking for program /ccs/home/adams/dbx...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/dbx...not found Checking for program /ccs/home/adams/git-fat/xdb...not found Checking for program /opt/cray/llm/default/bin/xdb...not found Checking for program /opt/cray/llm/default/etc/xdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/xdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/xdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/xdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/xdb...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/xdb...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/xdb...not found Checking for program /ccs/home/adams/git-fat/xdb...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/xdb...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/xdb...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/xdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/xdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/xdb...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/xdb...not found Checking for program /opt/cray/netcdf/4.3.2/bin/xdb...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/xdb...not found Checking for program /sw/xk6/altd/bin/xdb...not found Checking for program /sw/xk6/site-aprun/bin/xdb...not found Checking for program /sw/xk6/bin/xdb...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/xdb...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/xdb...not found Checking for program /opt/cray/atp/1.7.5/bin/xdb...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/xdb...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/xdb...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/xdb...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/xdb...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/xdb...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/xdb...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/xdb...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/xdb...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/xdb...not found Checking for program /opt/cray/craype/2.2.1/bin/xdb...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/xdb...not found Checking for program /opt/modules/3.2.6.7/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/X11/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /opt/bin/xdb...not found Checking for program /usr/lib/mit/bin/xdb...not found Checking for program /usr/lib/mit/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /usr/lib/qt3/bin/xdb...not found Checking for program /opt/cray/bin/xdb...not found Checking for program /opt/public/bin/xdb...not found Checking for program /opt/bin/xdb...not found Checking for program /opt/public/bin/xdb...not found Checking for program /ccs/home/adams/xdb...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/xdb...not found Checking for program /ccs/home/adams/git-fat/dsymutil...not found Checking for program /opt/cray/llm/default/bin/dsymutil...not found Checking for program /opt/cray/llm/default/etc/dsymutil...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/dsymutil...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/dsymutil...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/dsymutil...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/dsymutil...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/dsymutil...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/dsymutil...not found Checking for program /ccs/home/adams/git-fat/dsymutil...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/dsymutil...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/dsymutil...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/dsymutil...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/dsymutil...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/dsymutil...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/dsymutil...not found Checking for program /opt/cray/netcdf/4.3.2/bin/dsymutil...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/dsymutil...not found Checking for program /sw/xk6/altd/bin/dsymutil...not found Checking for program /sw/xk6/site-aprun/bin/dsymutil...not found Checking for program /sw/xk6/bin/dsymutil...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/dsymutil...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/dsymutil...not found Checking for program /opt/cray/atp/1.7.5/bin/dsymutil...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/dsymutil...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/dsymutil...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/dsymutil...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/dsymutil...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/dsymutil...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/dsymutil...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/dsymutil...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/dsymutil...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/dsymutil...not found Checking for program /opt/cray/craype/2.2.1/bin/dsymutil...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/dsymutil...not found Checking for program /opt/modules/3.2.6.7/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/X11/dsymutil...not found Checking for program /usr/X11R6/bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /opt/bin/dsymutil...not found Checking for program /usr/lib/mit/bin/dsymutil...not found Checking for program /usr/lib/mit/sbin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /usr/lib/qt3/bin/dsymutil...not found Checking for program /opt/cray/bin/dsymutil...not found Checking for program /opt/public/bin/dsymutil...not found Checking for program /opt/bin/dsymutil...not found Checking for program /opt/public/bin/dsymutil...not found Checking for program /ccs/home/adams/dsymutil...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureArchitecture from PETSc.options.arch(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/arch.py:25) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:25) Checks PETSC_ARCH and sets if not set =============================================================================== Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-titan-opt64idx-pgi, ignoring environment: arch-titan-dbg-pgi =============================================================================== Defined "ARCH" to ""arch-titan-opt64idx-pgi"" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be Executing: cd /lustre/atlas/scratch/adams/env003/petsc && git describe stdout: v3.5.4-3262-g8b6cf26 Executing: cd /lustre/atlas/scratch/adams/env003/petsc && git log -1 --pretty=format:%H stdout: 8b6cf26020bf37a52766e2af10ae1bfe9e3c5792 Executing: cd /lustre/atlas/scratch/adams/env003/petsc && git log -1 --pretty=format:%ci stdout: 2015-06-04 16:11:01 -0500 Executing: cd /lustre/atlas/scratch/adams/env003/petsc && git branch stdout: * master ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) bin/maint exists. This appears to be a repository clone .git directory exists Defined "VERSION_GIT" to ""v3.5.4-3262-g8b6cf26"" Defined "VERSION_DATE_GIT" to ""2015-06-04 16:11:01 -0500"" Defined "VERSION_BRANCH_GIT" to ""master"" Changed persistence directory to /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/lib/petsc/conf ================================================================================ TEST setInstallDir from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/installDir.py:74) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:74) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/installDir.py:67) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:67) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/installDir.py:51) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:51) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/installDir.py:87) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:87) Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Preprocess stderr before filtering:: Preprocess stderr after filtering:: Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Preprocess stderr before filtering:: Preprocess stderr after filtering:: Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 11) 2.23.1 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 11) 2.23.1 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 11) 2.23.1 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 11) 2.23.1 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Pushing language C Popping language C Defined make macro "AR_FLAGS" to "cr" Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Pushing language C Popping language C Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Executing: cc -V stdout: pgcc 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Pushing language C Popping language C Executing: uname -s stdout: Linux Executing: cc -V stdout: pgcc 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Pushing language CXX Popping language CXX Executing: uname -s stdout: Linux Executing: cc -V stdout: pgcc 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Pushing language FC Popping language FC Checking for header: dlfcn.h All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.headers Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/dlfcn.h" # 18 "/usr/include/dlfcn.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/dlfcn.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 26 "/usr/include/dlfcn.h" # 27 "/usr/include/dlfcn.h" # 1 "/usr/include/bits/dlfcn.h" # 18 "/usr/include/bits/dlfcn.h" # 24 "/usr/include/bits/dlfcn.h" # 33 "/usr/include/bits/dlfcn.h" # 38 "/usr/include/bits/dlfcn.h" # 41 "/usr/include/bits/dlfcn.h" # 29 "/usr/include/dlfcn.h" # 56 "/usr/include/dlfcn.h" extern void * dlopen ( const char * __file , int __mode ) ; # 60 "/usr/include/dlfcn.h" extern int dlclose ( void * __handle ) ; # 64 "/usr/include/dlfcn.h" extern void * dlsym ( void * __restrict __handle , const char * __restrict __name ) ; # 82 "/usr/include/dlfcn.h" extern char * dlerror ( void ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.libraries Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Pushing language C Popping language C ================================================================================ TEST printEnvVariables from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1535) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1535) **** printenv **** = PE_LIBSCI_GENCOMPS_CRAY_interlagos=83 PBS_O_LANG=en_US.UTF-8 CRAY_LIBSCI_BASE_DIR=/opt/cray/libsci/13.0.1 CPU=x86_64 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/petsc/3.5.1.0/real/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig INFOPATH=/opt/acml/5.3.1/Doc:/usr/local/info:/usr/share/info:/usr/info ALTD_ON=1 XTPE_LINK_TYPE=dynamic PROFILEREAD=true ATP_HOME=/opt/cray/atp/1.7.5 JAVA_HOME=/usr/lib64/jvm/java APRUN_USAGE_PATH=/sw/xk6/aprun-usage PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/13.0.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5/1.8.13/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/trilinos/11.10.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_GENCOMPS_GNU_interlagos=49 48 CVSROOT=:ext:madams@anag.lbl.gov:/usr/local/cvsroot PE_TPSL_DEFAULT_GENCOMPS_PGI_x86_64=141 PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_SMA_DIR_CRAY_DEFAULT64=64 CSHEDIT=emacs LESSOPEN=lessopen.sh %s PE_LIBSCI_GENCOMPS_INTEL_interlagos=140 CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include USER=adams PGI_VERS_STR=14.2.0 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=140 PGROUPD_LICENSE_FILE=/opt/pgi/license.dat JDK_HOME=/usr/lib64/jvm/java PE_HDF5_DEFAULT_GENCOMPS_GNU=49 48 CRAY_LIBSCI_DIR=/opt/cray/libsci/13.0.1 CRAY_NETCDF_HDF5PARALLEL_VERSION=4.3.2 CRAYPE_LINK_TYPE=dynamic JAVA_BINDIR=/usr/lib64/jvm/java/bin PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf/4.3.2/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig CRAY_LIBSCI_VERSION=13.0.1 PE_ACML_DEFAULT_DIR_OPENMP=_mp PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL TMPDIR=/tmp/scratch PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI PBS_GPUFILE=/var/spool/torque/aux//2378331gpu PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/ga/5.1.0.5/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig PE_LIBSCI_GENCOMPS_PGI_x86_64=141 PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=49 48 MODULE_VERSION=3.2.10 LIBSCI_VERSION=13.0.1 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include PE_MPICH_DEFAULT_GENCOMPS_GNU=49 48 PE_ACML_TARGET_interlagos=_fma4 PE_ACML_DIR_INTEL=ifort64 PE_LIBSCI_GENCOMPS_INTEL_x86_64=140 PE_GA_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_FORTRAN_PKGCONFIG_LIBS=netcdff_parallel:mpichf90 PE_MPICH_GENCOMPS_PGI=141 PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda PE_ACML_DEFAULT_TARGET_interlagos=_fma4 CRAY_CUDATOOLKIT_VERSION=5.5.51-1.0502.9594.3.1 NNTPSERVER=news CUDATOOLKIT_HOME=/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1 HOST=titan-login4 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf/4.3.2/PGI/141/lib/pkgconfig:/opt/cray/hdf5/1.8.13/PGI/141/lib/pkgconfig:/opt/cray/ga/5.1.0.5/PGI/141/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/PGI/141/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/PGI/141/lib/pkgconfig PE_MPICH_MODULE_NAME=cray-mpich PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV=CRAY GNU DDTMPIRUN=/opt/cray/alps/default/bin/aprun PBS_MICFILE=/var/spool/torque/aux//2378331mic PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/fftw/3.3.4.0/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=140 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.5.0/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig JRE_HOME=/usr/lib64/jvm/java/jre PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/1.4.2/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig PBS_O_HOME=/ccs/home/adams PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=49 48 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI WORLDWORK=/lustre/atlas/world-shared PBS_ENVIRONMENT=PBS_INTERACTIVE PE_LIBSCI_GENCOMPS_PGI_interlagos=141 PGI=/opt/pgi/14.2.0 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@ LIBSCI_BASE_DIR=/opt/cray/libsci/13.0.1 PE_LIBSCI_GENCOMPS_INTEL_haswell=140 ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/atp/1.7.5/lib/ PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL PE_LIBSCI_GENCOMPS_CRAY_haswell=83 PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5-parallel/1.8.13/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_MPICH_DIR_PGI_DEFAULT64=64 PE_GA_DEFAULT_VOLATILE_PRGENV=GNU LOADEDMODULES=modules/3.2.6.7:eswrap/1.1.0-1.020200.1231.0:craype-network-gemini:craype/2.2.1:pgi/14.2.0:cray-libsci/13.0.1:udreg/2.3.2-1.0502.9275.1.25.gem:ugni/5.0-1.0502.9685.4.24.gem:pmi/5.0.5-1.0000.10300.134.8.gem:dmapp/7.0.1-1.0502.9501.5.211.gem:gni-headers/3.0-1.0502.9684.5.2.gem:xpmem/0.1-2.0502.55507.3.2.gem:job/1.5.5-0.1_2.0502.54585.3.66.gem:dvs/2.5_0.9.0-1.0502.1873.1.142.gem:rca/1.0.0-2.0502.53711.3.125.gem:atp/1.7.5:PrgEnv-pgi/5.2.40:cray-mpich/7.0.4:craype-interlagos:lustredu/1.4:DefApps:site-aprun/1.0:aprun-usage/1.0:altd/1.0:cmake/2.8.10.2:acml/5.3.1:cray-netcdf-hdf5parallel/4.3.2:ddt/4.2.2-39105:cudatoolkit/5.5.51-1.0502.9594.3.1:git/2.3.2:python/2.7.9:nodestat/2.2-1.0502.53712.3.109.gem:sdb/1.0-1.0502.55976.5.27.gem:alps/5.2.1-2.0502.9479.20.1.gem:lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2:hss-llm/7.2.0:Base-opts/1.0.2-1.0502.53325.1.2.gem PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=140 PE_MPICH_DEFAULT_DIR_PGI_DEFAULT64=64 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ CRAY_LD_LIBRARY_PATH=/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/lib64:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64:/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib:/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64:/opt/cray/libsci/13.0.1/PGI/141/x86_64/lib PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PE_ACML_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DEFAULT_DIR@@PE_ACML_DEFAULT_TARGET@@PE_ACML_DEFAULT_DIR_OPENMP@@PE_ACML_DEFAULT_DIR_DEFAULT64@/lib/pkgconfig PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI PE_MPICH_DEFAULT_GENCOMPS_PGI=141 PYTHONPATH=/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/lib64/py:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/lib/python2.7/site-packages:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/lib/python2.7/site-packages LESS=-M -I PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64=83 CRAYPE_NETWORK_TARGET=gemini USERMODULES=/opt/modules/3.2.6.7/init/.usermodules:acml:alps:apprentice2:atp:blcr:cce:chapel:cray-fftw:cray-libsci:cray-mpich2:craypat:craype:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:mrnet:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:petsc:petsc-complex:pgi:pmi:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview XKEYSYMDB=/usr/share/X11/XKeysymDB CRAY_CPU_TARGET=interlagos PE_PKGCONFIG_PRODUCTS=PE_NETCDF_HDF5PARALLEL:PE_ACML:PE_MPICH:PE_LIBSCI NETCDF_DIR=/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141 PE_LIBSCI_MODULE_NAME=cray-libsci/13.0.1 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_ACML_TARGET_x86_64= PELOCAL_PRGENV=true PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=140 TARGETMODULES=/opt/modules/3.2.6.7/init/.targetmodules:craype-abudhabi:craype-abudhabi-cu:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-knc:craype-mc12:craype-mc8:craype-network-aries:craype-network-gemini:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-target-petest:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon PE_ACML_DIR_DEFAULT64=_int64 SITE_APRUN_DIR=/sw/xk6/site-aprun CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64 LS_COLORS= CRAYOS_VERSION=5.2.40 PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=49 48 JAVA_ROOT=/usr/lib64/jvm/java PBS_O_LOGNAME=adams ESWRAP_LOGIN=titan-login1 MODULE_VERSION_STACK=3.2.10 PE_NETCDF_HDF5PARALLEL_VOLATILE_PRGENV=GNU SHLVL=1 CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@ CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64 PETSC_DIR=/autofs/na3_home1/adams/petsc_maint PBS_O_PATH=/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/bin:/opt/public/bin PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35=nv35 PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_TPSL XTPE_NETWORK_TARGET=gemini ENV=/etc/bash.bashrc PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=140 LS_OPTIONS=-N --color=none -T 0 MODULEPATH=/opt/cray/gem/modulefiles:/opt/cray/craype/default/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/cm/local/modulefiles:/cm/shared/modulefiles:/sw/xk6/modulefiles:/sw/xk7/modulefiles QT_HOME_DIR=/usr/share/desktop-data PGI_VERSION=14.2 ALT_LINKER=/sw/xk6/altd/bin/ld SYSTEM_USERDIR=/tmp/work/adams PERL5LIB=/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/lib64/perl5/site_perl PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_haswell=140 OPENSSL_NO_DEFAULT_ZLIB=yes PE_FFTW_DEFAULT_TARGET_interlagos=interlagos LC_ALL=POSIX PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_MPICH_DEFAULT_GENCOMPS_CRAY=83 PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=83 LANG=en_US.UTF-8 ALTD_PATH=/sw/xk6/altd PBS_O_WORKDIR=/autofs/nccs-svm1_home1/adams _LMFILES_000=/opt/modulefiles/modules/3.2.6.7:/opt/modulefiles/eswrap/1.1.0-1.020200.1231.0:/opt/cray/craype/default/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.2.1:/opt/modulefiles/pgi/14.2.0:/opt/cray/modulefiles/cray-libsci/13.0.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.9275.1.25.gem:/opt/cray/gem/modulefiles/ugni/5.0-1.0502.9685.4.24.gem:/opt/cray/gem/modulefiles/pmi/5.0.5-1.0000.10300.134.8.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.9501.5.211.gem:/opt/cray/gem/modulefiles/gni-headers/3.0-1.0502.9684.5.2.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.55507.3.2.gem:/opt/cray/gem/modulefiles/job/1.5.5-0.1_2.0502.54585.3.66.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.1873.1.142.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.53711.3.125.gem:/opt/cray/modulefiles/atp/1.7.5:/opt/cray/modulefiles/PrgEnv-pgi/5.2.40:/opt/cray/modulefiles/cray-mpich/7.0.4:/opt/cray/craype/default/modulefiles/craype-interlagos:/sw/xk6/modulefiles/lustredu/1.4:/sw/xk6/modulefiles/Def _LMFILES_001=Apps:/sw/xk6/modulefiles/site-aprun/1.0:/sw/xk6/modulefiles/aprun-usage/1.0:/sw/xk6/modulefiles/altd/1.0:/sw/xk6/modulefiles/cmake/2.8.10.2:/opt/modulefiles/acml/5.3.1:/opt/cray/modulefiles/cray-netcdf-hdf5parallel/4.3.2:/sw/xk6/modulefiles/ddt/4.2.2-39105:/opt/cray/modulefiles/cudatoolkit/5.5.51-1.0502.9594.3.1:/sw/xk6/modulefiles/git/2.3.2:/sw/xk6/modulefiles/python/2.7.9:/opt/cray/gem/modulefiles/nodestat/2.2-1.0502.53712.3.109.gem:/opt/cray/gem/modulefiles/sdb/1.0-1.0502.55976.5.27.gem:/opt/cray/gem/modulefiles/alps/5.2.1-2.0502.9479.20.1.gem:/opt/cray/modulefiles/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2:/opt/modulefiles/hss-llm/7.2.0:/opt/modulefiles/Base-opts/1.0.2-1.0502.53325.1.2.gem PE_ACML_DEFAULT_DIR_CRAY=gfortran64 DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/include PE_LIBSCI_DEFAULT_GENCOMPS_PGI_interlagos=141 PROJWORK=/lustre/atlas/proj-shared PKG_CONFIG_PATH_DEFAULT=/opt/cray/papi/5.3.1/lib64/pkgconfig PE_SMA_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/sma@PE_SMA_DIR_DEFAULT64@/lib64/pkgconfig PBS_TASKNUM=1 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PBS_NUM_NODES=1 PE_CXX_PKGCONFIG_LIBS=netcdf_c++4_parallel:mpichcxx SSH_TTY=/dev/pts/20 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=49 48 PE_NETCDF_FORTRAN_PKGCONFIG_LIBS=netcdff_parallel PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL ACML_BASE_DIR=/opt/acml/5.3.1 CH_TIMER=TRUE PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=49 48 SSH_CLIENT=68.49.162.216 53664 22 LOGNAME=adams PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig PATH=/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PBS_VERSION=TORQUE-4.2.6 PE_ACML_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DIR@@PE_ACML_TARGET@@PE_ACML_DIR_OPENMP@@PE_ACML_DIR_DEFAULT64@/lib/pkgconfig HOME=/ccs/home/adams CRAY_PRE_COMPILE_OPTS=-hnetwork=gemini INFODIR=/usr/local/info:/usr/share/info:/usr/info MAP_LICENSE_FILE=/sw/sources/ddt/Licence.map PE_NETCDF_CXX_PKGCONFIG_LIBS=netcdf_c++4_parallel CRAY_PRGENVPGI=loaded PBS_O_SERVER=moab1.ccs.ornl.gov GITDIR=/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4 CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64 PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-intel/140/lib/pkgconfig:/opt/cray/netcdf/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/hdf5/1.8.13/INTEL/140/lib/pkgconfig:/opt/cray/ga/5.1.0.5/INTEL/140/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/INTEL/140/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/INTEL/140/lib/pkgconfig PE_MPICH_FIXED_PRGENV=INTEL PE_ACML_DEFAULT_DIR_INTEL=ifort64 PKGCONFIG_ENABLED=1 ALTD_SELECT_OFF_USERS= SHMEM_ABORT_ON_ERROR=1 PE_LIBSCI_GENCOMPS_GNU_x86_64=49 48 XAUTHLOCALHOSTNAME=titan-ext1 PE_PKGCONFIG_LIBS=cray-cudatoolkit:netcdf_parallel:acml:mpich:AtpSigHandler:cray-rca:libsci_mpi:libsci PBS_NODENUM=0 PE_LIBSCI_GENCOMPS_INTEL_sandybridge=140 CH_OUTPUT_INTERVAL=100000 XCURSOR_THEME=DMZ CRAYPE_DIR=/opt/cray/craype/2.2.1 XDG_DATA_DIRS=/usr/local/share:/usr/share:/etc/opt/kde3/share:/opt/cray/share:/opt/kde3/share:/opt/public/share:/usr/share/gnome/help PE_MPICH_TARGET_VAR_nvidia35=-lcudart CRAY_MPICH2_BASEDIR=/opt/cray/mpt/7.0.4/gni CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include MANPATH=/opt/cray/llm/default/man:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/man:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/man:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/share/man:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/share/man:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/share/man:/opt/cray/netcdf/4.3.2/share/man:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/man:/sw/sources/hpss/man:/sw/xk6/man:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/man:/opt/cray/mpt/7.0.4/gni/man/mpich2:/opt/cray/atp/1.7.5/man:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/man:/opt/cray/libsci/13.0.1/man:/opt/pgi/14.2.0/linux86-64/14.2/man:/opt/cray/craype/2.2.1/man:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/man:/opt/modules/3.2.6.7/man:/opt/cray/share/man:/usr/share/man:/usr/local/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/current/share/man CRAY_CUDATOOLKIT_INCLUDE_OPTS=-I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/Debugger/include PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci_acc/3.0.2/@PRGENV@/@PE_LIBSCI_ACC_DEFAULT_GENCOMPS@/@PE_LIBSCI_ACC_DEFAULT_TARGET@/lib/pkgconfig ALTD_SELECT_USERS= PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_MPICH PBS_NODEFILE=/var/spool/torque/aux//2378331 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 HOSTNAME=titan-ext1 PETSC_ARCH=arch-titan-opt64idx-pgi PBS_VNODENUM=0 PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=140 MACHTYPE=x86_64-suse-linux GROUP=adams MINICOM=-c on CVS_RSH=ssh PE_LIBSCI_GENCOMPS_CRAY_sandybridge=83 PE_PETSC_DEFAULT_GENCOMPS_PGI_x86_64=141 DVS_VERSION=0.9.0 LIBRARYMODULES=/opt/modules/3.2.6.7/init/.librarymodules:acml:alps:apprentice2:atp:cray-fftw:cray-libsci:cray-mpich2:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:lgdb:libfast:libsci_acc:mpich1:mpich2:mrnet:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:petsc:petsc-complex:pmi:shmem:tpsl:trilinos:xt-atp:xt-lgdb:xt-libsci:xt-mpt:xt-papi PE_LIBSCI_DEFAULT_GENCOMPS_GNU_interlagos=49 48 MODULESHOME=/opt/modules/3.2.6.7 ACML_VERSION=5.3.1 PBS_JOBCOOKIE=BAA96FA2626AC2319CB77C0F342B2FD6 PBS_O_HOST=titan-ext1.ccs.ornl.gov PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=83 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=83 PE_MPICH_NV_LIBS_nvidia35=-lcudart PE_LIBSCI_GENCOMPS_CRAY_x86_64=83 PBS_NUM_PPN=16 PBS_O_SHELL=/bin/csh XDG_CONFIG_DIRS=/etc/xdg OMP_NUM_THREADS=16 PE_NETCDF_DEFAULT_GENCOMPS_GNU=49 48 PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20=nv20 PAGER=less PE_GA_DEFAULT_GENCOMPS_GNU=49 48 CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64 PE_ACML_DIR_PGI=pgi64 ATP_MRNET_COMM_PATH=/opt/cray/atp/1.7.5/bin/atp_mrnet_commnode_wrapper CRAY_MPICH2_VER=7.0.4 CRAY_CUDATOOLKIT_POST_LINK_OPTS=-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -Wl,--as-needed -Wl,-lcupti -Wl,-lcudart -Wl,--no-as-needed -L/opt/cray/nvidia/default/lib64 -lcuda LD_LIBRARY_PATH=/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/lib:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/lib:/opt/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/lib/32:/opt/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/lib/64:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/lib64:/opt/pgi/14.2.0/linux86-64/14.2/libso:/opt/pgi/14.2.0/linux86-64/14.2/lib G_BROKEN_FILENAMES=1 FFTW_SYSTEM_WISDOM_DIR=/opt/cray/libsci/13.0.1 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_sandybridge=83 PGI_PATH=/opt/pgi/14.2.0 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_sandybridge=140 PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos=140 G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-1,CP1252 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_haswell=83 PBS_JOBNAME=STDIN PE_LIBSCI_VOLATILE_PRGENV=CRAY GNU INTEL PGI LESSCLOSE=lessclose.sh %s %s PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/lib64 PE_LIBSCI_DEFAULT_GENCOMPS_PGI_x86_64=141 PBS_NP=16 PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=83 MORE=-sl PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp HOSTTYPE=x86_64 CRAYPE_VERSION=2.2.1 PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_interlagos=83 TERM=xterm-color PBS_MOMPORT=15003 MEMBERWORK=/lustre/atlas/scratch/adams PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI CRAY_MPICH2_DIR=/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141 PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf/4.3.2/CRAY/83/lib/pkgconfig:/opt/cray/hdf5/1.8.13/CRAY/83/lib/pkgconfig:/opt/cray/ga/5.1.0.5/CRAY/83/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/CRAY/83/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/CRAY/83/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/CRAY/83/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 LESSKEY=/etc/lesskey.bin PYTHONSTARTUP=/etc/pythonstart PBS_O_QUEUE=batch PWD=/lustre/atlas/scratch/adams/env003/petsc XTOS_VERSION=5.2.40 RCLOCAL_BASEOPTS=true PE_PRODUCT_LIST=CRAY_LLM:CRAY_ALPS:ACML:CRAYPE_INTERLAGOS:CRAY_RCA:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:PGI PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/13.0.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_ACML_DIR_GNU=gfortran64 PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci CRAY_NETCDF_DIR=/opt/cray/netcdf-hdf5parallel/4.3.2 SHELL=/bin/csh PE_MPICH_NV_LIBS= PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU CRAY_MPICH2_ROOTDIR=/opt/cray/mpt/7.0.4 PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI LESS_ADVANCED_PREPROCESSOR=no PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU PRGENVMODULES=/opt/modules/3.2.6.7/init/.prgenvmodules:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi DMAPP_ABORT_ON_ERROR=1 VENDOR=suse PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI MPICH_ABORT_ON_ERROR=1 PE_ENV=PGI PE_CRAY_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/CRAY/83/lib/pkgconfig PE_MPICH_VOLATILE_PRGENV=CRAY GNU PGI PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=49 48 SDK_HOME=/usr/lib64/jvm/java PE_ACML_DEFAULT_DIR_GNU=gfortran64 PE_NETCDF_HDF5PARALLEL_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_MPICH PBS_QUEUE=batch PE_MPICH_GENCOMPS_CRAY=83 PBS_JOBID=2378331 CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -lrca PE_MPICH_TARGET_VAR_nvidia20=-lcudart MAIL=/var/mail/adams CSHRCREAD=true SSH_CONNECTION=68.49.162.216 53664 160.91.205.198 22 TOOLMODULES=/opt/modules/3.2.6.7/init/.toolmodules:apprentice:apprentice2:atp:chapel:craypat:ddt:gdb:iobuf:mrnet:papi:perftools:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview PE_MPICH_DIR_CRAY_DEFAULT64=64 PE_NETCDF_HDF5PARALLEL_FIXED_PRGENV=CRAY PGI INTEL ALTD_SELECT_ON=0 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_haswell=49 48 INPUTRC=/etc/inputrc QTDIR=/usr/lib/qt3 PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_@accelerator@ PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64=48 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=49 48 CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_ACML:PE_MPICH:PE_TPSL:PE_NETCDF:PE_TRILINOS:PE_PETSC:PE_HDF5:PE_GA:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_PARALLEL_NETCDF:PE_FFTW:PE_LIBSCI:PE_LIBSCI_ACC PE_PAPI_DEFAULT_TARGET_VAR_nvidia35=,-lcupti,-lcudart,-lcuda MPICH_DIR=/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141 PE_LIBSCI_GENCOMPS_GNU_sandybridge=49 48 PKG_CONFIG_PATH=/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/lib64/pkgconfig:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/lib/pkgconfig:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/lib/pkgconfig:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64/pkgconfig:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64/pkgconfig:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64/pkgconfig:/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64/pkgconfig:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64/pkgconfig:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64/pkgconfig:/opt/cray/craype/2.2.1/pkg-config:/opt/cray/iobuf/2.0.5/lib/pkgconfig:/opt/cray/atp/1.7.5/lib/pkgconfig XNLSPATH=/usr/share/X11/nls PBS_O_MAIL=/var/mail/adams ALTD_VERBOSE=0 WINDOWMANAGER=/usr/bin/gnome CRAY_LLM_DIR=/opt/cray/llm/default PE_ACML_DIR_OPENMP=_mp PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=49 48 CRAY_CUDATOOLKIT_DIR=/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1 COLORTERM=1 CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/include -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include PE_MPICH_NV_LIBS_nvidia20=-lcudart DISPLAY=localhost:50.0 PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_ACML_DEFAULT_DIR_DEFAULT64=_int64 PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/mpt/7.0.4/gni/mpich2-intel/140/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=140 PBS_WALLTIME=1800 PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH OSTYPE=linux PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=49 48 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=140 PE_TPSL_DEFAULT_GENCOMPS_PGI_interlagos=141 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_MPICH_GENCOMPS_GNU=49 48 PE_NETCDF_MODULE_NAME=cray-netcdf-hdf5parallel CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include -I/opt/cray-hss-devel/7.2.0/include PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_NETCDF_HDF5PARALLEL_GENCOMPS_GNU=49 48 DDT_LICENSE_FILE=/sw/sources/ddt/Licence PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64=83 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/libsci/13.0.1/PGI/141/x86_64 PE_PETSC_DEFAULT_GENCOMPS_PGI_interlagos=141 VT_FILTER_SPEC=./filter.spec PE_PGI_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib/pkgconfig TZ=US/Eastern PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY GNU PGI PE_MPICH_MULTITHREADED_LIBS_multithreaded=_mt PE_ACML_DEFAULT_DIR_PGI=pgi64 PE_LIBSCI_OMP_REQUIRES_openmp=_mp CRAY_SITE_LIST_DIR=/etc/opt/cray/modules PE_ACML_DIR_CRAY=gfortran64 RCLOCAL_PRGENV=true APRUN_XFER_LIMITS=0 PE_SMA_DIR_PGI_DEFAULT64=64 PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 WORKDIR=/tmp/work/adams PE_NETCDF_HDF5PARALLEL_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_GENCOMPS@/lib/pkgconfig PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@ PE_LIBSCI_GENCOMPS_GNU_haswell=49 48 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64 PE_NETCDF_PKGCONFIG_LIBS=netcdf_parallel DDT_HOME=/sw/xk6/ddt/4.2.2-39105/sles11.1_binary ================================================================================ TEST resetEnvCompilers from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1542) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1542) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1572) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1572) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1507) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1526) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1526) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:399) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:399) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:409) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:409) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:535) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:535) Locate a functional C compiler Checking for program /ccs/home/adams/git-fat/cc...not found Checking for program /opt/cray/llm/default/bin/cc...not found Checking for program /opt/cray/llm/default/etc/cc...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/cc...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/cc...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/cc...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/cc...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/cc...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/cc...not found Checking for program /ccs/home/adams/git-fat/cc...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/cc...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/cc...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/cc...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cc...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cc...not found Checking for program /sw/xk6/altd/bin/cc...not found Checking for program /sw/xk6/site-aprun/bin/cc...not found Checking for program /sw/xk6/bin/cc...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/cc...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/cc...not found Checking for program /opt/cray/atp/1.7.5/bin/cc...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/cc...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/cc...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/cc...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/cc...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/cc...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/cc...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/cc...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/cc...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/cc...not found Checking for program /opt/cray/craype/2.2.1/bin/cc...found Defined make macro "CC" to "cc" Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.setCompilers Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Testing executable /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:568) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:568) Locate a functional C preprocessor Checking for program /ccs/home/adams/git-fat/cc...not found Checking for program /opt/cray/llm/default/bin/cc...not found Checking for program /opt/cray/llm/default/etc/cc...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/cc...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/cc...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/cc...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/cc...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/cc...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/cc...not found Checking for program /ccs/home/adams/git-fat/cc...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/cc...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/cc...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/cc...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cc...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cc...not found Checking for program /sw/xk6/altd/bin/cc...not found Checking for program /sw/xk6/site-aprun/bin/cc...not found Checking for program /sw/xk6/bin/cc...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/cc...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/cc...not found Checking for program /opt/cray/atp/1.7.5/bin/cc...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/cc...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/cc...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/cc...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/cc...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/cc...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/cc...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/cc...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/cc...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/cc...not found Checking for program /opt/cray/craype/2.2.1/bin/cc...found Defined make macro "CPP" to "cc -E" Pushing language C Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c" # 1 "/usr/include/stdlib.h" # 17 "/usr/include/stdlib.h" # 21 "/usr/include/stdlib.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 26 "/usr/include/stdlib.h" # 27 "/usr/include/stdlib.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 290 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 310 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 326 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef int wchar_t ; # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 34 "/usr/include/stdlib.h" # 97 "/usr/include/stdlib.h" typedef struct { int quot ; int rem ; } div_t ; # 104 "/usr/include/stdlib.h" # 106 "/usr/include/stdlib.h" typedef struct { long int quot ; long int rem ; } ldiv_t ; # 117 "/usr/include/stdlib.h" typedef struct { long long int quot ; long long int rem ; } lldiv_t ; # 128 "/usr/include/stdlib.h" # 133 "/usr/include/stdlib.h" # 138 "/usr/include/stdlib.h" # 140 "/usr/include/stdlib.h" extern size_t __ctype_get_mb_cur_max ( void ) ; # 144 "/usr/include/stdlib.h" extern double atof ( const char * __nptr ) ; extern int atoi ( const char * __nptr ) ; extern long int atol ( const char * __nptr ) ; # 157 "/usr/include/stdlib.h" extern long long int atoll ( const char * __nptr ) ; # 164 "/usr/include/stdlib.h" extern double strtod ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 172 "/usr/include/stdlib.h" extern float strtof ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 176 "/usr/include/stdlib.h" extern long double strtold ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 183 "/usr/include/stdlib.h" extern long int strtol ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; extern unsigned long int strtoul ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 194 "/usr/include/stdlib.h" # 196 "/usr/include/stdlib.h" extern long long int strtoq ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 201 "/usr/include/stdlib.h" extern unsigned long long int strtouq ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 208 "/usr/include/stdlib.h" # 210 "/usr/include/stdlib.h" extern long long int strtoll ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 215 "/usr/include/stdlib.h" extern unsigned long long int strtoull ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 310 "/usr/include/stdlib.h" extern char * l64a ( long int __n ) ; # 313 "/usr/include/stdlib.h" extern long int a64l ( const char * __s ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 321 "/usr/include/stdlib.h" # 325 "/usr/include/stdlib.h" extern long int random ( void ) ; # 329 "/usr/include/stdlib.h" extern void srandom ( unsigned int __seed ) ; # 335 "/usr/include/stdlib.h" extern char * initstate ( unsigned int __seed , char * __statebuf , size_t __statelen ) ; # 340 "/usr/include/stdlib.h" extern char * setstate ( char * __statebuf ) ; # 347 "/usr/include/stdlib.h" # 349 "/usr/include/stdlib.h" struct random_data { int32_t * fptr ; int32_t * rptr ; int32_t * state ; int rand_type ; int rand_deg ; int rand_sep ; int32_t * end_ptr ; } ; # 360 "/usr/include/stdlib.h" extern int random_r ( struct random_data * __restrict __buf , int32_t * __restrict __result ) ; # 363 "/usr/include/stdlib.h" extern int srandom_r ( unsigned int __seed , struct random_data * __buf ) ; # 366 "/usr/include/stdlib.h" extern int initstate_r ( unsigned int __seed , char * __restrict __statebuf , size_t __statelen , struct random_data * __restrict __buf ) ; # 371 "/usr/include/stdlib.h" extern int setstate_r ( char * __restrict __statebuf , struct random_data * __restrict __buf ) ; # 379 "/usr/include/stdlib.h" extern int rand ( void ) ; extern void srand ( unsigned int __seed ) ; # 386 "/usr/include/stdlib.h" extern int rand_r ( unsigned int * __seed ) ; # 392 "/usr/include/stdlib.h" # 394 "/usr/include/stdlib.h" extern double drand48 ( void ) ; extern double erand48 ( unsigned short int __xsubi [ 3 ] ) ; # 398 "/usr/include/stdlib.h" extern long int lrand48 ( void ) ; extern long int nrand48 ( unsigned short int __xsubi [ 3 ] ) ; # 403 "/usr/include/stdlib.h" extern long int mrand48 ( void ) ; extern long int jrand48 ( unsigned short int __xsubi [ 3 ] ) ; # 408 "/usr/include/stdlib.h" extern void srand48 ( long int __seedval ) ; extern unsigned short int * seed48 ( unsigned short int __seed16v [ 3 ] ) ; extern void lcong48 ( unsigned short int __param [ 7 ] ) ; # 417 "/usr/include/stdlib.h" struct drand48_data { unsigned short int __x [ 3 ] ; unsigned short int __old_x [ 3 ] ; unsigned short int __c ; unsigned short int __init ; unsigned long long int __a ; } ; # 427 "/usr/include/stdlib.h" extern int drand48_r ( struct drand48_data * __restrict __buffer , double * __restrict __result ) ; extern int erand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , double * __restrict __result ) ; # 434 "/usr/include/stdlib.h" extern int lrand48_r ( struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; extern int nrand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; # 443 "/usr/include/stdlib.h" extern int mrand48_r ( struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; extern int jrand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; # 452 "/usr/include/stdlib.h" extern int srand48_r ( long int __seedval , struct drand48_data * __buffer ) ; # 456 "/usr/include/stdlib.h" extern int seed48_r ( unsigned short int __seed16v [ 3 ] , struct drand48_data * __buffer ) ; # 459 "/usr/include/stdlib.h" extern int lcong48_r ( unsigned short int __param [ 7 ] , struct drand48_data * __buffer ) ; # 470 "/usr/include/stdlib.h" extern void * malloc ( size_t __size ) ; extern void * calloc ( size_t __nmemb , size_t __size ) ; # 481 "/usr/include/stdlib.h" # 484 "/usr/include/stdlib.h" extern void * realloc ( void * __ptr , size_t __size ) ; extern void free ( void * __ptr ) ; # 492 "/usr/include/stdlib.h" extern void cfree ( void * __ptr ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 29 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 33 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 39 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" extern void * __alloca ( size_t __size ) ; extern void * alloca ( size_t __size ) ; extern void * __builtin_alloca ( size_t __size ) ; # 498 "/usr/include/stdlib.h" # 501 "/usr/include/stdlib.h" extern void * valloc ( size_t __size ) ; # 506 "/usr/include/stdlib.h" extern int posix_memalign ( void * * __memptr , size_t __alignment , size_t __size ) ; # 512 "/usr/include/stdlib.h" extern void abort ( void ) __attribute__ ( ( __noreturn__ ) ) ; # 516 "/usr/include/stdlib.h" extern int atexit ( void ( * __func ) ( void ) ) ; # 534 "/usr/include/stdlib.h" extern int on_exit ( void ( * __func ) ( int __status , void * __arg ) , void * __arg ) ; # 542 "/usr/include/stdlib.h" extern void exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 558 "/usr/include/stdlib.h" extern void _Exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 565 "/usr/include/stdlib.h" extern char * getenv ( const char * __name ) ; # 570 "/usr/include/stdlib.h" extern char * __secure_getenv ( const char * __name ) ; # 575 "/usr/include/stdlib.h" # 577 "/usr/include/stdlib.h" extern int putenv ( char * __string ) ; # 583 "/usr/include/stdlib.h" extern int setenv ( const char * __name , const char * __value , int __replace ) ; # 587 "/usr/include/stdlib.h" extern int unsetenv ( const char * __name ) ; # 594 "/usr/include/stdlib.h" extern int clearenv ( void ) ; # 603 "/usr/include/stdlib.h" extern char * mktemp ( char * __template ) ; # 613 "/usr/include/stdlib.h" # 615 "/usr/include/stdlib.h" extern int mkstemp ( char * __template ) ; # 635 "/usr/include/stdlib.h" # 637 "/usr/include/stdlib.h" extern int mkstemps ( char * __template , int __suffixlen ) ; # 657 "/usr/include/stdlib.h" extern char * mkdtemp ( char * __template ) ; # 711 "/usr/include/stdlib.h" extern int system ( const char * __command ) ; # 728 "/usr/include/stdlib.h" extern char * realpath ( const char * __restrict __name , char * __restrict __resolved ) ; # 734 "/usr/include/stdlib.h" # 737 "/usr/include/stdlib.h" typedef int ( * __compar_fn_t ) ( const void * , const void * ) ; # 749 "/usr/include/stdlib.h" extern void * bsearch ( const void * __key , const void * __base , size_t __nmemb , size_t __size , __compar_fn_t __compar ) ; # 755 "/usr/include/stdlib.h" extern void qsort ( void * __base , size_t __nmemb , size_t __size , __compar_fn_t __compar ) ; # 765 "/usr/include/stdlib.h" extern int abs ( int __x ) __attribute__ ( ( __const__ ) ) ; extern long int labs ( long int __x ) __attribute__ ( ( __const__ ) ) ; # 771 "/usr/include/stdlib.h" extern long long int llabs ( long long int __x ) __attribute__ ( ( __const__ ) ) ; # 778 "/usr/include/stdlib.h" extern div_t div ( int __numer , int __denom ) __attribute__ ( ( __const__ ) ) ; extern ldiv_t ldiv ( long int __numer , long int __denom ) __attribute__ ( ( __const__ ) ) ; # 788 "/usr/include/stdlib.h" extern lldiv_t lldiv ( long long int __numer , long long int __denom ) __attribute__ ( ( __const__ ) ) ; # 797 "/usr/include/stdlib.h" # 801 "/usr/include/stdlib.h" extern char * ecvt ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; # 807 "/usr/include/stdlib.h" extern char * fcvt ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; # 813 "/usr/include/stdlib.h" extern char * gcvt ( double __value , int __ndigit , char * __buf ) ; # 819 "/usr/include/stdlib.h" extern char * qecvt ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; extern char * qfcvt ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; extern char * qgcvt ( long double __value , int __ndigit , char * __buf ) ; # 831 "/usr/include/stdlib.h" extern int ecvt_r ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; extern int fcvt_r ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; # 839 "/usr/include/stdlib.h" extern int qecvt_r ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; extern int qfcvt_r ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; # 853 "/usr/include/stdlib.h" extern int mblen ( const char * __s , size_t __n ) ; # 856 "/usr/include/stdlib.h" extern int mbtowc ( wchar_t * __restrict __pwc , const char * __restrict __s , size_t __n ) ; # 860 "/usr/include/stdlib.h" extern int wctomb ( char * __s , wchar_t __wchar ) ; # 864 "/usr/include/stdlib.h" extern size_t mbstowcs ( wchar_t * __restrict __pwcs , const char * __restrict __s , size_t __n ) ; extern size_t wcstombs ( char * __restrict __s , const wchar_t * __restrict __pwcs , size_t __n ) ; # 878 "/usr/include/stdlib.h" extern int rpmatch ( const char * __response ) ; # 903 "/usr/include/stdlib.h" # 906 "/usr/include/stdlib.h" extern int posix_openpt ( int __oflag ) ; # 941 "/usr/include/stdlib.h" extern int getloadavg ( double __loadavg [ ] , int __nelem ) ; # 947 "/usr/include/stdlib.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:609) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:609) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:649) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:649) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:761) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:761) Locate a functional Cxx compiler Checking for program /ccs/home/adams/git-fat/CC...not found Checking for program /opt/cray/llm/default/bin/CC...not found Checking for program /opt/cray/llm/default/etc/CC...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/CC...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/CC...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/CC...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/CC...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/CC...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/CC...not found Checking for program /ccs/home/adams/git-fat/CC...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/CC...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/CC...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/CC...not found Checking for program /opt/cray/netcdf/4.3.2/bin/CC...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/CC...not found Checking for program /sw/xk6/altd/bin/CC...not found Checking for program /sw/xk6/site-aprun/bin/CC...not found Checking for program /sw/xk6/bin/CC...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/CC...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/CC...not found Checking for program /opt/cray/atp/1.7.5/bin/CC...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/CC...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/CC...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/CC...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/CC...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/CC...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/CC...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/CC...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/CC...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/CC...not found Checking for program /opt/cray/craype/2.2.1/bin/CC...found Defined make macro "CXX" to "CC" Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Testing executable /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:799) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:799) Locate a functional Cxx preprocessor Checking for program /ccs/home/adams/git-fat/CC...not found Checking for program /opt/cray/llm/default/bin/CC...not found Checking for program /opt/cray/llm/default/etc/CC...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/CC...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/CC...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/CC...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/CC...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/CC...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/CC...not found Checking for program /ccs/home/adams/git-fat/CC...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/CC...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/CC...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/CC...not found Checking for program /opt/cray/netcdf/4.3.2/bin/CC...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/CC...not found Checking for program /sw/xk6/altd/bin/CC...not found Checking for program /sw/xk6/site-aprun/bin/CC...not found Checking for program /sw/xk6/bin/CC...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/CC...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/CC...not found Checking for program /opt/cray/atp/1.7.5/bin/CC...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/CC...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/CC...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/CC...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/CC...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/CC...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/CC...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/CC...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/CC...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/CC...not found Checking for program /opt/cray/craype/2.2.1/bin/CC...found Defined make macro "CXXCPP" to "CC -E" Pushing language Cxx Executing: CC -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc" # 1 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc" # 1 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conffix.h" extern "C" { } # 3 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_prolog.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl_user_config.h" # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat.h" # 49 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat.h" # 63 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat.h" # 70 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat.h" # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_site_config.h" # 40 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_site_config.h" # 81 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stlcomp.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 53 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 60 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 101 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 125 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 30 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 40 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 52 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 45 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 59 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 79 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 87 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 99 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 110 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 119 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 127 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 162 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 240 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 59 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 138 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 228 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 258 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 271 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 285 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 507 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 49 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stlcomp.h" # 124 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stlcomp.h" # 84 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_confix.h" # 47 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_confix.h" # 93 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 137 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 190 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 201 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 209 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 217 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 225 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 233 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 293 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 305 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 331 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 382 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 408 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 419 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 429 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 454 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 467 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 490 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" namespace std { } namespace __std_alias = std; # 515 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 527 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 548 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 559 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" namespace std { } namespace stlport = std; # 597 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 664 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 700 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 714 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 732 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 763 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 778 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 799 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 816 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 833 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 847 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 864 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 889 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 920 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 931 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 969 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1018 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1045 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1055 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1074 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_prolog.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" # 1 "/usr/include/stdlib.h" # 1 "/usr/include/features.h" # 118 "/usr/include/features.h" # 141 "/usr/include/features.h" # 150 "/usr/include/features.h" # 172 "/usr/include/features.h" # 182 "/usr/include/features.h" # 214 "/usr/include/features.h" # 264 "/usr/include/features.h" # 311 "/usr/include/features.h" # 343 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 60 "/usr/include/sys/cdefs.h" # 96 "/usr/include/sys/cdefs.h" # 111 "/usr/include/sys/cdefs.h" # 121 "/usr/include/sys/cdefs.h" # 146 "/usr/include/sys/cdefs.h" # 158 "/usr/include/sys/cdefs.h" # 195 "/usr/include/sys/cdefs.h" # 231 "/usr/include/sys/cdefs.h" # 261 "/usr/include/sys/cdefs.h" # 284 "/usr/include/sys/cdefs.h" # 314 "/usr/include/sys/cdefs.h" # 347 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 386 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 26 "/usr/include/stdlib.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 50 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 96 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 121 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 166 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t; # 238 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 347 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 359 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 392 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 410 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 417 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 36 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 56 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 34 "/usr/include/stdlib.h" extern "C" { # 95 "/usr/include/stdlib.h" typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) throw() ; extern double atof (const char *__nptr) throw() ; extern int atoi (const char *__nptr) throw() ; extern long int atol (const char *__nptr) throw() ; extern long long int atoll (const char *__nptr) throw() ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw() ; extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw() ; extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw() ; extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw() ; extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw() ; # 205 "/usr/include/stdlib.h" extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw() ; extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw() ; # 274 "/usr/include/stdlib.h" # 305 "/usr/include/stdlib.h" extern char *l64a (long int __n) throw() ; extern long int a64l (const char *__s) throw() ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" extern "C" { # 1 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 61 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" extern "C" { char *strptime (const char * , const char *, struct tm *); } # 1 "/usr/include/time.h" # 33 "/usr/include/time.h" # 52 "/usr/include/time.h" # 68 "/usr/include/time.h" typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" # 420 "/usr/include/time.h" # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 145 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 50 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 96 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 121 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 166 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 238 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 347 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 359 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 392 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 410 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 417 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 36 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 56 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; typedef char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char u_int8_t; typedef unsigned short int u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long int u_int64_t; typedef int register_t; # 215 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 51 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 97 "/usr/include/bits/byteswap.h" # 136 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 95 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 46 "/usr/include/bits/select.h" # 56 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" typedef __sigset_t sigset_t; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" extern "C" { # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" } # 1 "/usr/include/time.h" # 33 "/usr/include/time.h" # 52 "/usr/include/time.h" # 68 "/usr/include/time.h" # 84 "/usr/include/time.h" # 96 "/usr/include/time.h" # 108 "/usr/include/time.h" struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 60 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern "C" { extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 69 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 46 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; unsigned long long int __total_seq; unsigned long long int __wakeup_seq; unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" } # 321 "/usr/include/stdlib.h" extern long int random (void) throw(); extern void srandom (unsigned int __seed) throw(); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw() ; extern char *setstate (char *__statebuf) throw() ; struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw() ; extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw() ; extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw() ; extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw() ; extern int rand (void) throw(); extern void srand (unsigned int __seed) throw(); extern int rand_r (unsigned int *__seed) throw(); extern double drand48 (void) throw(); extern double erand48 (unsigned short int __xsubi[3]) throw() ; extern long int lrand48 (void) throw(); extern long int nrand48 (unsigned short int __xsubi[3]) throw() ; extern long int mrand48 (void) throw(); extern long int jrand48 (unsigned short int __xsubi[3]) throw() ; extern void srand48 (long int __seedval) throw(); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw() ; extern void lcong48 (unsigned short int __param[7]) throw() ; struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw() ; extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw() ; extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw() ; extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw() ; extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw() ; extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw() ; extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw() ; extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw() ; extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw() ; extern void *malloc (size_t __size) throw() ; extern void *calloc (size_t __nmemb, size_t __size) throw() ; extern void *realloc (void *__ptr, size_t __size) throw() ; extern void free (void *__ptr) throw(); extern void cfree (void *__ptr) throw(); # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 50 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 96 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 121 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 166 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 238 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 347 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 359 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 392 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 410 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 417 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 36 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 56 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" extern "C" { extern "C" { extern void * __alloca (size_t __size); extern void * alloca (size_t __size); extern void * __builtin_alloca (size_t __size); } } # 498 "/usr/include/stdlib.h" extern void *valloc (size_t __size) throw() ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw() ; extern void abort (void) throw() __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw() ; # 530 "/usr/include/stdlib.h" extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw() ; extern void exit (int __status) throw() __attribute__ ((__noreturn__)); # 553 "/usr/include/stdlib.h" extern void _Exit (int __status) throw() __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw() ; extern char *__secure_getenv (const char *__name) throw() ; extern int putenv (char *__string) throw() ; extern int setenv (const char *__name, const char *__value, int __replace) throw() ; extern int unsetenv (const char *__name) throw(); extern int clearenv (void) throw(); extern char *mktemp (char *__template) throw() ; extern int mkstemp (char *__template) ; # 628 "/usr/include/stdlib.h" extern int mkstemps (char *__template, int __suffixlen) ; # 651 "/usr/include/stdlib.h" extern char *mkdtemp (char *__template) throw() ; # 705 "/usr/include/stdlib.h" extern int system (const char *__command) ; # 722 "/usr/include/stdlib.h" extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw() ; typedef int (*__compar_fn_t) (const void *, const void *); # 746 "/usr/include/stdlib.h" extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) ; extern int abs (int __x) throw() __attribute__ ((__const__)) ; extern long int labs (long int __x) throw() __attribute__ ((__const__)) ; extern long long int llabs (long long int __x) throw() __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw() __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw() __attribute__ ((__const__)) ; extern lldiv_t lldiv (long long int __numer, long long int __denom) throw() __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw() ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw() ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw() ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw() ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw() ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw() ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw() ; extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw() ; extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw() ; extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw() ; extern int mblen (const char *__s, size_t __n) throw() ; extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw() ; extern int wctomb (char *__s, wchar_t __wchar) throw() ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw(); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw(); extern int rpmatch (const char *__response) throw() ; # 895 "/usr/include/stdlib.h" extern int posix_openpt (int __oflag) ; # 926 "/usr/include/stdlib.h" # 937 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) throw() ; # 954 "/usr/include/stdlib.h" } # 39 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" namespace std { using ::div_t; using ::ldiv_t; using ::size_t; using ::abort; using ::atexit; using ::exit; using ::getenv; using ::calloc; using ::free; using ::malloc; using ::realloc; using ::atof; using ::atoi; using ::atol; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; using ::bsearch; using ::qsort; using ::abs; using ::div; using ::labs; using ::ldiv; using ::rand; using ::srand; } namespace std { inline long abs(long __x) { return ::labs(__x); } inline ldiv_t div(long __x, long __y) { return ::ldiv(__x, __y); } inline long long abs(long long __x) { return __x >= 0 ? __x : -__x; } } # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_epilog.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat_post.h" # 38 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat_post.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_epilog.h" # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_epilog.h" # 120 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" # 4 "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:916) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:916) Locate a functional Fortran compiler Checking for program /ccs/home/adams/git-fat/ftn...not found Checking for program /opt/cray/llm/default/bin/ftn...not found Checking for program /opt/cray/llm/default/etc/ftn...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/ftn...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/ftn...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ftn...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ftn...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ftn...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ftn...not found Checking for program /ccs/home/adams/git-fat/ftn...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ftn...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ftn...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ftn...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ftn...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ftn...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/ftn...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ftn...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ftn...not found Checking for program /sw/xk6/altd/bin/ftn...not found Checking for program /sw/xk6/site-aprun/bin/ftn...not found Checking for program /sw/xk6/bin/ftn...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ftn...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ftn...not found Checking for program /opt/cray/atp/1.7.5/bin/ftn...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ftn...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ftn...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ftn...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ftn...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ftn...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ftn...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ftn...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ftn...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ftn...not found Checking for program /opt/cray/craype/2.2.1/bin/ftn...found Defined make macro "FC" to "ftn" Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Testing executable /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:937) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:937) Make sure fortran comment "!" works Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1000) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1000) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Skip checking PIC options on user request ================================================================================ TEST checkLargeFileIO from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1033) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1033) ================================================================================ TEST checkArchiver from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1132) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1132) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /ccs/home/adams/git-fat/ar...not found Checking for program /opt/cray/llm/default/bin/ar...not found Checking for program /opt/cray/llm/default/etc/ar...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/ar...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/ar...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ar...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ar...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ar...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ar...not found Checking for program /ccs/home/adams/git-fat/ar...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ar...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ar...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/ar...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ar...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ar...not found Checking for program /sw/xk6/altd/bin/ar...not found Checking for program /sw/xk6/site-aprun/bin/ar...not found Checking for program /sw/xk6/bin/ar...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ar...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ar...not found Checking for program /opt/cray/atp/1.7.5/bin/ar...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ar...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ar...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ar...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ar...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ar...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ar...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ar...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ar...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ar...not found Checking for program /opt/cray/craype/2.2.1/bin/ar...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/ar...not found Checking for program /opt/modules/3.2.6.7/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /ccs/home/adams/git-fat/ranlib...not found Checking for program /opt/cray/llm/default/bin/ranlib...not found Checking for program /opt/cray/llm/default/etc/ranlib...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/ranlib...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/ranlib...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ranlib...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ranlib...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ranlib...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ranlib...not found Checking for program /ccs/home/adams/git-fat/ranlib...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ranlib...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ranlib...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/ranlib...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ranlib...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ranlib...not found Checking for program /sw/xk6/altd/bin/ranlib...not found Checking for program /sw/xk6/site-aprun/bin/ranlib...not found Checking for program /sw/xk6/bin/ranlib...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ranlib...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ranlib...not found Checking for program /opt/cray/atp/1.7.5/bin/ranlib...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ranlib...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ranlib...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ranlib...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ranlib...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ranlib...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ranlib...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ranlib...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ranlib...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ranlib...not found Checking for program /opt/cray/craype/2.2.1/bin/ranlib...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/ranlib...not found Checking for program /opt/modules/3.2.6.7/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/scratch/petsc-kMEe3S/config.setCompilers/libconf1.a /tmp/scratch/petsc-kMEe3S/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/scratch/petsc-kMEe3S/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /ccs/home/adams/git-fat/ar...not found Checking for program /opt/cray/llm/default/bin/ar...not found Checking for program /opt/cray/llm/default/etc/ar...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/ar...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/ar...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ar...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ar...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ar...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ar...not found Checking for program /ccs/home/adams/git-fat/ar...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ar...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ar...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/ar...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ar...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ar...not found Checking for program /sw/xk6/altd/bin/ar...not found Checking for program /sw/xk6/site-aprun/bin/ar...not found Checking for program /sw/xk6/bin/ar...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ar...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ar...not found Checking for program /opt/cray/atp/1.7.5/bin/ar...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ar...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ar...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ar...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ar...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ar...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ar...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ar...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ar...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ar...not found Checking for program /opt/cray/craype/2.2.1/bin/ar...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/ar...not found Checking for program /opt/modules/3.2.6.7/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /ccs/home/adams/git-fat/ranlib...not found Checking for program /opt/cray/llm/default/bin/ranlib...not found Checking for program /opt/cray/llm/default/etc/ranlib...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/ranlib...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/ranlib...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ranlib...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ranlib...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ranlib...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ranlib...not found Checking for program /ccs/home/adams/git-fat/ranlib...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ranlib...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ranlib...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/ranlib...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ranlib...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ranlib...not found Checking for program /sw/xk6/altd/bin/ranlib...not found Checking for program /sw/xk6/site-aprun/bin/ranlib...not found Checking for program /sw/xk6/bin/ranlib...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ranlib...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ranlib...not found Checking for program /opt/cray/atp/1.7.5/bin/ranlib...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ranlib...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ranlib...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ranlib...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ranlib...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ranlib...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ranlib...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ranlib...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ranlib...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ranlib...not found Checking for program /opt/cray/craype/2.2.1/bin/ranlib...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/ranlib...not found Checking for program /opt/modules/3.2.6.7/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/scratch/petsc-kMEe3S/config.setCompilers/libconf1.a /tmp/scratch/petsc-kMEe3S/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/scratch/petsc-kMEe3S/config.setCompilers/libconf1.a Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/tmp/scratch/petsc-kMEe3S/config.setCompilers -lconf1 Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1243) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1243) Check that the linker can produce shared libraries Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Executing: /usr/bin/ar cr /tmp/scratch/petsc-kMEe3S/config.setCompilers/libconftest.a /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o ; /usr/bin/ranlib /tmp/scratch/petsc-kMEe3S/config.setCompilers/libconftest.a Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/tmp/scratch/petsc-kMEe3S/config.setCompilers -lconftest Using shared linker /usr/bin/ar with flags [] and library extension a ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1321) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1321) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Trying C linker flag -Wl,-rpath, Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc Popping language C Pushing language Cxx Trying Cxx linker flag -Wl,-rpath, Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc Popping language Cxx Pushing language FC Trying FC linker flag -Wl,-rpath, Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1356) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1356) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1405) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1405) Check that the linker can dynamicaly load shared libraries Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: /usr/bin/ar -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/libconftest.so /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: /usr/bin/ar: creating /tmp/scratch/petsc-kMEe3S/config.setCompilers/libconftest.so Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/scratch/petsc-kMEe3S/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/bin/ar with flags [] and library extension so ================================================================================ TEST output from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py:1451) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1451) Output module data as defines and substitutions Substituting "CC" with "cc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "cc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "CC" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "CC -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "ftn" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) Pushing language C Executing: cc --version stdout: pgcc 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Executing: cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -mp -fast Popping language C Pushing language Cxx Executing: CC --version stdout: pgCC 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Executing: CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -mp -fast Popping language Cxx Pushing language FC Executing: ftn --version stdout: pgf90 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Executing: ftn --help stdout: Usage: ftn [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: ftn --help stdout: Usage: ftn [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -mp -fast Popping language FC ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilerFlags.py:71) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:71) Get the default compiler flags Trying C compiler flag -mp -fast Trying Cxx compiler flag -mp -fast Trying FC compiler flag -mp -fast Checking for functions [__floatdidf] in library ['-lgcc_s.1'] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __floatdidf(); static void _check___floatdidf() { __floatdidf(); } int main() { _check___floatdidf();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -lgcc_s.1 -ldl Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lgcc_s.1 Popping language C Executing: uname -s ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined "USE_64BIT_INDICES" to "1" Defined make macro "PETSC_INDEX_SIZE" to "64" stdout: Linux ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureDebugging from PETSc.options.debugging(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Popping language FC Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MMD -MP /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: pgcc-Error-Unknown switch: -MP Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to pgcc-Error-Unknown switch: -MP PETSc Error: No output file produced Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MMD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -xMMD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: pgcc-Error-Unknown switch: -xMMD Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to pgcc-Error-Unknown switch: -xMMD PETSc Error: No output file produced Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -qmakedep=gcc /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: pgcc-Error-Unknown switch: -qmakedep=gcc Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to pgcc-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MMD -MP /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: pgCC-Error-Unknown switch: -MP Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to pgCC-Error-Unknown switch: -MP PETSc Error: No output file produced Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MMD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -xMMD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: pgCC-Error-Unknown switch: -xMMD Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to pgCC-Error-Unknown switch: -xMMD PETSc Error: No output file produced Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -qmakedep=gcc /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: pgCC-Error-Unknown switch: -qmakedep=gcc Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to pgCC-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc stdout: conftest.o : /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc \ /opt/pgi/14.2.0/linux86-64/14.2/include/omp.h \ /tmp/scratch/petsc-kMEe3S/config.setCompilers/confdefs.h \ /tmp/scratch/petsc-kMEe3S/config.setCompilers/conffix.h Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MMD -MP /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -MMD pgf90-Error-Unknown switch: -MP Source: program main end Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to pgf90-Error-Unknown switch: -MMD pgf90-Error-Unknown switch: -MP PETSc Error: No output file produced Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MMD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -MMD Source: program main end Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to pgf90-Error-Unknown switch: -MMD PETSc Error: No output file produced Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -xMMD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -xMMD Source: program main end Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to pgf90-Error-Unknown switch: -xMMD PETSc Error: No output file produced Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -qmakedep=gcc /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -qmakedep=gcc Source: program main end Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to pgf90-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -MD /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -MD Source: program main end Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to pgf90-Error-Unknown switch: -MD PETSc Error: No output file produced Popping language FC Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { int x[2],y; y = 5; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Popping language C Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx Pushing language CXX Popping language CXX Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdf_c++4_parallel -lmpichcxx_pgi -lzceh -lgcc_eh -lstdmpz -lCmpz -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdf_c++4_parallel -lmpichcxx_pgi -lzceh -lgcc_eh -lstdmpz -lCmpz -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdf_c++4_parallel -lmpichcxx_pgi -lzceh -lgcc_eh -lstdmpz -lCmpz -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Popping language C Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdf_c++4_parallel -lmpichcxx_pgi -lzceh -lgcc_eh -lstdmpz -lCmpz -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdf_c++4_parallel -lmpichcxx_pgi -lzceh -lgcc_eh -lstdmpz -lCmpz -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdf_c++4_parallel -lmpichcxx_pgi -lzceh -lgcc_eh -lstdmpz -lCmpz -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Popping language FC Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc", line 4: catastrophic error: cannot open source file "random" #include ^ 1 catastrophic error detected in the compilation of "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc", line 4: catastrophic error: cannot open source file "random" #include ^ 1 catastrophic error detected in the compilation of "/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc". Compilation terminated. PETSc Error: No output file produced Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast -DTesting /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" Popping language FC Executing: ftn -V stdout: pgf90 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Pushing language FC Popping language FC Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: stderr: File with unknown suffix passed to linker: /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: File with unknown suffix passed to linker: /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: stderr: File with unknown suffix passed to linker: /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Testing executable /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Popping language C Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: stderr: File with unknown suffix passed to linker: /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: File with unknown suffix passed to linker: /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.o /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: stderr: File with unknown suffix passed to linker: /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Testing executable /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: uname -s stdout: Linux Pushing language FC Popping language FC Pushing language FC Popping language FC ================================================================================ TEST checkRestrict from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.compilers Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } compilers: Set C restrict keyword to restrict Defined "C_RESTRICT" to "restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:310) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:310) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:321) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:321) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:164) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:164) Determines the libraries needed to link with C Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -v -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: Export PGI=/opt/pgi/14.2.0 /sw/xk6/altd/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Bdynamic /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -ldl --as-needed -lcupti -lcudart --no-as-needed -lcuda --as-needed -lnetcdf_parallel --no-as-needed -lacml_mp --as-needed -lmpich_pgi --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lrca --as-needed -lsci_pgi_mpi_mp --no-as-needed --as-needed -lsci_pgi_mp --no-as-needed -rpath /opt/pgi/14.2.0/linux86-64/14.2/libso -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -laccapidmp -lpgmp -Bdynamic -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lpthread -lm -lgcc -lc -lgcc /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o /usr/lib64/crtn.o Popping language C compilers: Checking arg Export compilers: Unknown arg Export compilers: Checking arg PGI=/opt/pgi/14.2.0 compilers: Unknown arg PGI=/opt/pgi/14.2.0 compilers: Checking arg /sw/xk6/altd/bin/ld compilers: Unknown arg /sw/xk6/altd/bin/ld compilers: Checking arg /usr/lib64/crt1.o compilers: Unknown arg /usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Unknown arg /usr/lib64/crti.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld compilers: Checking arg -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Found library directory: -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Checking arg -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Found library directory: -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Found library directory: -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Found library directory: -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Checking arg -L/opt/cray/nvidia/default/lib64 compilers: Found library directory: -L/opt/cray/nvidia/default/lib64 compilers: Checking arg -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Found library directory: -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Checking arg -L/opt/cray/atp/1.7.5/lib compilers: Found library directory: -L/opt/cray/atp/1.7.5/lib compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Found library directory: -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Found library directory: -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Found library directory: -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o compilers: Unknown arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lcupti compilers: Found library : -lcupti compilers: Checking arg -lcudart compilers: Found library : -lcudart compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lcuda compilers: Found library : -lcuda compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnetcdf_parallel compilers: Found library : -lnetcdf_parallel compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lacml_mp compilers: Found library : -lacml_mp compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpich_pgi compilers: Found library : -lmpich_pgi compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Found library : -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Found library : -lAtpSigHCommData compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg -lrca compilers: Found library : -lrca compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_pgi_mpi_mp compilers: Found library : -lsci_pgi_mpi_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_pgi_mp compilers: Found library : -lsci_pgi_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -rpath compilers: Found -rpath library: /opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest compilers: Unknown arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest compilers: Checking arg -laccapidmp compilers: Found library : -laccapidmp compilers: Checking arg -lpgmp compilers: Found library : -lpgmp compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lnuma compilers: Found library : -lnuma compilers: Checking arg -lpthread compilers: Found library : -lpthread compilers: Checking arg -lpgf90 compilers: Found library : -lpgf90 compilers: Checking arg -lpgf90_rpm1 compilers: Found library : -lpgf90_rpm1 compilers: Checking arg -lpgf902 compilers: Found library : -lpgf902 compilers: Checking arg -lpgf90rtl compilers: Found library : -lpgf90rtl compilers: Checking arg -lpgftnrtl compilers: Found library : -lpgftnrtl compilers: Checking arg -lnspgc compilers: Found library : -lnspgc compilers: Checking arg -lpgc compilers: Found library : -lpgc compilers: Checking arg -lrt compilers: Found library : -lrt compilers: Checking arg -lpthread compilers: Checking arg -lm compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o compilers: Checking arg /usr/lib64/crtn.o compilers: Unknown arg /usr/lib64/crtn.o compilers: Libraries needed to link C code with another linker: ['-L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib', '-L/opt/acml/5.3.1/pgi64_fma4_mp/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib', '-L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64', '-L/opt/cray/nvidia/default/lib64', '-L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64', '-L/opt/cray/atp/1.7.5/lib', '-L/opt/pgi/14.2.0/linux86-64/14.2/libso', '-L/opt/pgi/14.2.0/linux86-64/14.2/libso', '-L/opt/pgi/14.2.0/linux86-64/14.2/lib', '-L/usr/lib64/gcc/x86_64-suse-linux/4.3', '-ldl', '-lcupti', '-lcudart', '-lcuda', '-lnetcdf_parallel', '-lacml_mp', '-lmpich_pgi', '-lAtpSigHandler', '-lAtpSigHCommData', '-lrca', '-lsci_pgi_mpi_mp', '-lsci_pgi_mp', '-Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso', '-laccapidmp', '-lpgmp', '-lnuma', '-lpthread', '-lpgf90', '-lpgf90_rpm1', '-lpgf902', '-lpgf90rtl', '-lpgftnrtl', '-lnspgc', '-lpgc', '-lrt'] compilers: Check that C libraries can be used from Fortran ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1328) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1328) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Rejected C compiler flag -MMD because no dependency file (/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.d) was generated Trying C compiler flag -xMMD Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Rejected C compiler flag -MD because no dependency file (/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -MMD -MP Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Rejected Cxx compiler flag -MMD because no dependency file (/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -xMMD Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Rejected Cxx compiler flag -MD because no dependency file (/tmp/scratch/petsc-kMEe3S/config.setCompilers/conftest.d) was generated Trying FC compiler flag -MMD -MP Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Rejected FC compiler flag -MMD Trying FC compiler flag -xMMD Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Rejected FC compiler flag -MD ================================================================================ TEST checkC99Flag from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1372) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1372) Check for -std=c99 or equivalent flag ================================================================================ TEST checkRestrict from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: "/tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc", line 5: error: expected a ";" float * restrict x;; ^ "/tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc", line 5: warning: variable "restrict" was declared but never referenced float * restrict x;; ^ 1 error detected in the compilation of "/tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc". Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc", line 5: warning: variable "x" was declared but never referenced float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:359) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:359) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:334) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:334) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ ================================================================================ TEST checkCxxStaticInline from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:413) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:413) Determines the libraries needed to link with C++ Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -v -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: stderr: Export PGI=/opt/pgi/14.2.0 /sw/xk6/altd/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Bdynamic /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -rpath /opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl --as-needed -lcupti -lcudart --no-as-needed -lcuda --as-needed -lnetcdf_parallel --no-as-needed -lacml_mp --as-needed -lmpich_pgi --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lrca --as-needed -lsci_pgi_mpi_mp --no-as-needed --as-needed -lsci_pgi_mp --no-as-needed --as-needed -lnetcdf_c++4_parallel --no-as-needed --as-needed -lmpichcxx_pgi --no-as-needed -rpath /opt/pgi/14.2.0/linux86-64/14.2/libso -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -laccapidmp -lzceh -lgcc_eh --eh-frame-hdr -lstdmpz -lCmpz -lpgmp -Bdynamic -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lpthread -lm -lgcc -lc -lgcc /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o /usr/lib64/crtn.o Popping language Cxx compilers: Checking arg Export compilers: Unknown arg Export compilers: Checking arg PGI=/opt/pgi/14.2.0 compilers: Unknown arg PGI=/opt/pgi/14.2.0 compilers: Checking arg /sw/xk6/altd/bin/ld compilers: Unknown arg /sw/xk6/altd/bin/ld compilers: Checking arg /usr/lib64/crt1.o compilers: Unknown arg /usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Unknown arg /usr/lib64/crti.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld compilers: Checking arg -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Found library directory: -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Checking arg -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Found library directory: -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Found library directory: -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Found library directory: -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Checking arg -L/opt/cray/nvidia/default/lib64 compilers: Found library directory: -L/opt/cray/nvidia/default/lib64 compilers: Checking arg -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Found library directory: -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Checking arg -L/opt/cray/atp/1.7.5/lib compilers: Found library directory: -L/opt/cray/atp/1.7.5/lib compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Found library directory: -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Found library directory: -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Checking arg -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Checking arg -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Checking arg -L/opt/cray/nvidia/default/lib64 compilers: Checking arg -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Checking arg -L/opt/cray/atp/1.7.5/lib compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o compilers: Unknown arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lcupti compilers: Found library: -lcupti Library already in C list so skipping in C++ compilers: Checking arg -lcudart compilers: Found library: -lcudart Library already in C list so skipping in C++ compilers: Checking arg -lcuda compilers: Found library: -lcuda Library already in C list so skipping in C++ compilers: Checking arg -lnetcdf_parallel compilers: Found library: -lnetcdf_parallel Library already in C list so skipping in C++ compilers: Checking arg -lacml_mp compilers: Found library: -lacml_mp Library already in C list so skipping in C++ compilers: Checking arg -lmpich_pgi compilers: Found library: -lmpich_pgi Library already in C list so skipping in C++ compilers: Checking arg -lAtpSigHandler compilers: Found library: -lAtpSigHandler Library already in C list so skipping in C++ compilers: Checking arg -lAtpSigHCommData compilers: Found library: -lAtpSigHCommData Library already in C list so skipping in C++ compilers: Checking arg -lrca compilers: Found library: -lrca Library already in C list so skipping in C++ compilers: Checking arg -lsci_pgi_mpi_mp compilers: Found library: -lsci_pgi_mpi_mp Library already in C list so skipping in C++ compilers: Checking arg -lsci_pgi_mp compilers: Found library: -lsci_pgi_mp Library already in C list so skipping in C++ compilers: Checking arg -rpath compilers: Found -rpath library: /opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -laccapidmp compilers: Found library: -laccapidmp Library already in C list so skipping in C++ compilers: Checking arg -lpgmp compilers: Found library: -lpgmp Library already in C list so skipping in C++ compilers: Checking arg -lnuma compilers: Found library: -lnuma Library already in C list so skipping in C++ compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in C++ compilers: Checking arg -lpgf90 compilers: Found library: -lpgf90 Library already in C list so skipping in C++ compilers: Checking arg -lpgf90_rpm1 compilers: Found library: -lpgf90_rpm1 Library already in C list so skipping in C++ compilers: Checking arg -lpgf902 compilers: Found library: -lpgf902 Library already in C list so skipping in C++ compilers: Checking arg -lpgf90rtl compilers: Found library: -lpgf90rtl Library already in C list so skipping in C++ compilers: Checking arg -lpgftnrtl compilers: Found library: -lpgftnrtl Library already in C list so skipping in C++ compilers: Checking arg -lnspgc compilers: Found library: -lnspgc Library already in C list so skipping in C++ compilers: Checking arg -lpgc compilers: Found library: -lpgc Library already in C list so skipping in C++ compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lcupti compilers: Checking arg -lcudart compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lcuda compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnetcdf_parallel compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lacml_mp compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpich_pgi compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg -lrca compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_pgi_mpi_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_pgi_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnetcdf_c++4_parallel compilers: Found library: -lnetcdf_c++4_parallel compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpichcxx_pgi compilers: Found library: -lmpichcxx_pgi compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest compilers: Unknown arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest compilers: Checking arg -laccapidmp compilers: Checking arg -lzceh compilers: Found library: -lzceh compilers: Checking arg -lgcc_eh compilers: Found library: -lgcc_eh compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -lstdmpz compilers: Found library: -lstdmpz compilers: Checking arg -lCmpz compilers: Found library: -lCmpz compilers: Checking arg -lpgmp compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lnuma compilers: Checking arg -lpthread compilers: Checking arg -lpgf90 compilers: Checking arg -lpgf90_rpm1 compilers: Checking arg -lpgf902 compilers: Checking arg -lpgf90rtl compilers: Checking arg -lpgftnrtl compilers: Checking arg -lnspgc compilers: Checking arg -lpgc compilers: Checking arg -lrt compilers: Checking arg -lpthread compilers: Checking arg -lm compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o compilers: Checking arg /usr/lib64/crtn.o compilers: Unknown arg /usr/lib64/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib', '-L/opt/acml/5.3.1/pgi64_fma4_mp/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib', '-L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64', '-L/opt/cray/nvidia/default/lib64', '-L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64', '-L/opt/cray/atp/1.7.5/lib', '-L/opt/pgi/14.2.0/linux86-64/14.2/libso', '-L/opt/pgi/14.2.0/linux86-64/14.2/lib', '-L/usr/lib64/gcc/x86_64-suse-linux/4.3', '-Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso', '-lnetcdf_c++4_parallel', '-lmpichcxx_pgi', '-lzceh', '-lgcc_eh', '-lstdmpz', '-lCmpz'] compilers: Check that Cxx libraries can be used from C compilers: Check that Cxx libraries can be used from Fortran ================================================================================ TEST checkCxx11 from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:374) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:374) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. ================================================================================ TEST checkFortranTypeSizes from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:572) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:572) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:631) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:631) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o /tmp/scratch/petsc-kMEe3S/config.compilers/confc.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:668) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:668) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o /tmp/scratch/petsc-kMEe3S/config.compilers/confc.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F:2: undefined reference to `d1_chk_' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.compilers/conftest' Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:678) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:678) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:699) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:699) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:716) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:716) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -v -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: stderr: Export PGI=/opt/pgi/14.2.0 /sw/xk6/altd/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o /opt/pgi/14.2.0/linux86-64/14.2/libso/f90main.o -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Bdynamic /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -rpath /opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl --as-needed -lcupti -lcudart --no-as-needed -lcuda --as-needed -lnetcdf_parallel --no-as-needed -lacml_mp --as-needed -lmpich_pgi --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lrca --as-needed -lsci_pgi_mpi_mp --no-as-needed --as-needed -lsci_pgi_mp --no-as-needed --as-needed -lnetcdff_parallel --no-as-needed --as-needed -lmpichf90_pgi --no-as-needed -rpath /opt/pgi/14.2.0/linux86-64/14.2/libso -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -laccapidmp -lpgmp -Bdynamic -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lpgmp -lnspgc -lpgc -lrt -lpthread -lm -lgcc -lc -lgcc /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o /usr/lib64/crtn.o Popping language FC Adding -lpgftnrtl before -lpgf90rtl in librarylist compilers: Checking arg Export compilers: Unknown arg Export compilers: Checking arg PGI=/opt/pgi/14.2.0 compilers: Unknown arg PGI=/opt/pgi/14.2.0 compilers: Checking arg /sw/xk6/altd/bin/ld compilers: Unknown arg /sw/xk6/altd/bin/ld compilers: Checking arg /usr/lib64/crt1.o compilers: Unknown arg /usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Unknown arg /usr/lib64/crti.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/f90main.o compilers: Unknown arg /opt/pgi/14.2.0/linux86-64/14.2/libso/f90main.o compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Found strange PGI file ending with .ld, adding it compilers: Checking arg -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Found library directory: -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Checking arg -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Found library directory: -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Found library directory: -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Found library directory: -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Found library directory: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Checking arg -L/opt/cray/nvidia/default/lib64 compilers: Found library directory: -L/opt/cray/nvidia/default/lib64 compilers: Checking arg -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Found library directory: -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Checking arg -L/opt/cray/atp/1.7.5/lib compilers: Found library directory: -L/opt/cray/atp/1.7.5/lib compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Found library directory: -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Already in lflags so skipping: -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Found library directory: -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Checking arg -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Already in lflags so skipping: -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Checking arg -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Already in lflags so skipping: -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Already in lflags so skipping: -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Already in lflags so skipping: -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Already in lflags so skipping: -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Already in lflags so skipping: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Already in lflags so skipping: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Already in lflags so skipping: -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Checking arg -L/opt/cray/nvidia/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/nvidia/default/lib64 compilers: Checking arg -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Checking arg -L/opt/cray/atp/1.7.5/lib compilers: Already in lflags so skipping: -L/opt/cray/atp/1.7.5/lib compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Already in lflags so skipping: -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Already in lflags so skipping: -L/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Already in lflags so skipping: -L/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o compilers: Unknown arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -lcupti compilers: Found library: -lcupti Library already in C list so skipping in Fortran compilers: Checking arg -lcudart compilers: Found library: -lcudart Library already in C list so skipping in Fortran compilers: Checking arg -lcuda compilers: Found library: -lcuda Library already in C list so skipping in Fortran compilers: Checking arg -lnetcdf_parallel compilers: Found library: -lnetcdf_parallel Library already in C list so skipping in Fortran compilers: Checking arg -lacml_mp compilers: Found library: -lacml_mp Library already in C list so skipping in Fortran compilers: Checking arg -lmpich_pgi compilers: Found library: -lmpich_pgi Library already in C list so skipping in Fortran compilers: Checking arg -lAtpSigHandler compilers: Found library: -lAtpSigHandler Library already in C list so skipping in Fortran compilers: Checking arg -lAtpSigHCommData compilers: Found library: -lAtpSigHCommData Library already in C list so skipping in Fortran compilers: Checking arg -lrca compilers: Found library: -lrca Library already in C list so skipping in Fortran compilers: Checking arg -lsci_pgi_mpi_mp compilers: Found library: -lsci_pgi_mpi_mp Library already in C list so skipping in Fortran compilers: Checking arg -lsci_pgi_mp compilers: Found library: -lsci_pgi_mp Library already in C list so skipping in Fortran compilers: Checking arg -rpath compilers: Found -rpath library: /opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg -laccapidmp compilers: Found library: -laccapidmp Library already in C list so skipping in Fortran compilers: Checking arg -lpgmp compilers: Found library: -lpgmp Library already in C list so skipping in Fortran compilers: Checking arg -lnuma compilers: Found library: -lnuma Library already in C list so skipping in Fortran compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in Fortran compilers: Checking arg -lpgf90 compilers: Found library: -lpgf90 Library already in C list so skipping in Fortran compilers: Checking arg -lpgf90_rpm1 compilers: Found library: -lpgf90_rpm1 Library already in C list so skipping in Fortran compilers: Checking arg -lpgf902 compilers: Found library: -lpgf902 Library already in C list so skipping in Fortran compilers: Checking arg -lpgftnrtl compilers: Found library: -lpgftnrtl Library already in C list so skipping in Fortran compilers: Checking arg -lpgf90rtl compilers: Found library: -lpgf90rtl Library already in C list so skipping in Fortran compilers: Checking arg -lpgftnrtl compilers: Already in lflags: -lpgftnrtl compilers: Checking arg -lnspgc compilers: Found library: -lnspgc Library already in C list so skipping in Fortran compilers: Checking arg -lpgc compilers: Found library: -lpgc Library already in C list so skipping in Fortran compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lcupti compilers: Already in lflags: -lcupti compilers: Checking arg -lcudart compilers: Already in lflags: -lcudart compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lcuda compilers: Already in lflags: -lcuda compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnetcdf_parallel compilers: Already in lflags: -lnetcdf_parallel compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lacml_mp compilers: Already in lflags: -lacml_mp compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpich_pgi compilers: Already in lflags: -lmpich_pgi compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Already in lflags: -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Already in lflags: -lAtpSigHCommData compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg -lrca compilers: Already in lflags: -lrca compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_pgi_mpi_mp compilers: Already in lflags: -lsci_pgi_mpi_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_pgi_mp compilers: Already in lflags: -lsci_pgi_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnetcdff_parallel compilers: Found library: -lnetcdff_parallel compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpichf90_pgi compilers: Found library: -lmpichf90_pgi compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest compilers: Unknown arg /tmp/scratch/petsc-kMEe3S/config.compilers/conftest compilers: Checking arg -laccapidmp compilers: Already in lflags: -laccapidmp compilers: Checking arg -lpgmp compilers: Already in lflags: -lpgmp compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lnuma compilers: Already in lflags: -lnuma compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lpgf90 compilers: Already in lflags: -lpgf90 compilers: Checking arg -lpgf90_rpm1 compilers: Already in lflags: -lpgf90_rpm1 compilers: Checking arg -lpgf902 compilers: Already in lflags: -lpgf902 compilers: Checking arg -lpgftnrtl compilers: Already in lflags: -lpgftnrtl compilers: Checking arg -lpgf90rtl compilers: Already in lflags: -lpgf90rtl compilers: Checking arg -lpgftnrtl compilers: Already in lflags: -lpgftnrtl compilers: Checking arg -lpgmp compilers: Already in lflags: -lpgmp compilers: Checking arg -lnspgc compilers: Already in lflags: -lnspgc compilers: Checking arg -lpgc compilers: Already in lflags: -lpgc compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o compilers: Checking arg /usr/lib64/crtn.o compilers: Unknown arg /usr/lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld', '-L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib', '-L/opt/acml/5.3.1/pgi64_fma4_mp/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib', '-L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64', '-L/opt/cray/nvidia/default/lib64', '-L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64', '-L/opt/cray/atp/1.7.5/lib', '-L/opt/pgi/14.2.0/linux86-64/14.2/libso', '-L/opt/pgi/14.2.0/linux86-64/14.2/lib', '-L/usr/lib64/gcc/x86_64-suse-linux/4.3', '-Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso', '-lnetcdff_parallel', '-lmpichf90_pgi', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C compilers: Check that Fortran libraries can be used from C++ compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1062) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1062) Check that Fortran can be linked against C++ Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o /tmp/scratch/petsc-kMEe3S/config.compilers/cxxobj.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt /tmp/scratch/petsc-kMEe3S/config.compilers/confc.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1097) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1097) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1110) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1110) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1130) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1130) Check for F90 array interfaces Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o /tmp/scratch/petsc-kMEe3S/config.compilers/fooobj.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.compilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.compilers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.compilers/conftest stdout: arrays [0x6020e0 0x6020e0 0x6020e0] arrays [0x7fff6d974dc0 0x7fff6d974e30 0x7fff6d974dc0] pointers match! [0x7fff6d974dd0 0x7fff6d974dd0] [0x7fff6d974e40] Popping language FC Defined "HAVE_F90_2PTR_ARG" to "1" compilers: F90 compiler uses two arguments for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1217) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1217) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.compilers/confdir -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest -I/tmp/scratch/petsc-kMEe3S/config.compilers/confdir -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o /tmp/scratch/petsc-kMEe3S/config.compilers/configtest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1283) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1283) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -module /tmp/scratch/petsc-kMEe3S/config.compilers/confdir -mp -fast /tmp/scratch/petsc-kMEe3S/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/compilers.py:1437) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1437) Pushing language C Popping language C Defined "STDC_HEADERS" to "1" Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:PGC-F-0206-Can't find include file Direct.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file Direct.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:PGC-F-0206-Can't find include file ieeefp.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file ieeefp.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:PGC-F-0206-Can't find include file cxxabi.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file cxxabi.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:PGC-F-0206-Can't find include file dos.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file dos.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:PGC-F-0206-Can't find include file WindowsX.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file WindowsX.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:PGC-F-0206-Can't find include file machine/endian.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file machine/endian.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:PGC-F-0206-Can't find include file io.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file io.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:PGC-F-0206-Can't find include file mathimf.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file mathimf.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkStdC from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.headers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -mp -fast /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/string.h" # 17 "/usr/include/string.h" # 21 "/usr/include/string.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/string.h" # 30 "/usr/include/string.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 34 "/usr/include/string.h" # 35 "/usr/include/string.h" # 42 "/usr/include/string.h" extern void * memcpy ( void * __restrict __dest , const void * __restrict __src , size_t __n ) ; # 47 "/usr/include/string.h" extern void * memmove ( void * __dest , const void * __src , size_t __n ) ; # 54 "/usr/include/string.h" # 56 "/usr/include/string.h" extern void * memccpy ( void * __restrict __dest , const void * __restrict __src , int __c , size_t __n ) ; # 63 "/usr/include/string.h" extern void * memset ( void * __s , int __c , size_t __n ) ; # 66 "/usr/include/string.h" extern int memcmp ( const void * __s1 , const void * __s2 , size_t __n ) ; # 70 "/usr/include/string.h" # 94 "/usr/include/string.h" extern void * memchr ( const void * __s , int __c , size_t __n ) ; # 126 "/usr/include/string.h" extern char * strcpy ( char * __restrict __dest , const char * __restrict __src ) ; extern char * strncpy ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; # 134 "/usr/include/string.h" extern char * strcat ( char * __restrict __dest , const char * __restrict __src ) ; extern char * strncat ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; # 141 "/usr/include/string.h" extern int strcmp ( const char * __s1 , const char * __s2 ) ; extern int strncmp ( const char * __s1 , const char * __s2 , size_t __n ) ; # 148 "/usr/include/string.h" extern int strcoll ( const char * __s1 , const char * __s2 ) ; extern size_t strxfrm ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; # 160 "/usr/include/string.h" # 1 "/usr/include/xlocale.h" # 19 "/usr/include/xlocale.h" # 27 "/usr/include/xlocale.h" typedef struct __locale_struct { struct locale_data * __locales [ 13 ] ; # 33 "/usr/include/xlocale.h" const unsigned short int * __ctype_b ; const int * __ctype_tolower ; const int * __ctype_toupper ; # 38 "/usr/include/xlocale.h" const char * __names [ 13 ] ; } * __locale_t ; # 42 "/usr/include/xlocale.h" typedef __locale_t locale_t ; # 162 "/usr/include/string.h" # 163 "/usr/include/string.h" extern int strcoll_l ( const char * __s1 , const char * __s2 , __locale_t __l ) ; extern size_t strxfrm_l ( char * __dest , const char * __src , size_t __n , __locale_t __l ) ; # 172 "/usr/include/string.h" extern char * strdup ( const char * __s ) ; # 179 "/usr/include/string.h" # 181 "/usr/include/string.h" extern char * strndup ( const char * __string , size_t __n ) ; # 209 "/usr/include/string.h" # 233 "/usr/include/string.h" extern char * strchr ( const char * __s , int __c ) ; # 236 "/usr/include/string.h" # 260 "/usr/include/string.h" extern char * strrchr ( const char * __s , int __c ) ; # 281 "/usr/include/string.h" extern size_t strcspn ( const char * __s , const char * __reject ) ; # 285 "/usr/include/string.h" extern size_t strspn ( const char * __s , const char * __accept ) ; # 312 "/usr/include/string.h" extern char * strpbrk ( const char * __s , const char * __accept ) ; # 315 "/usr/include/string.h" # 340 "/usr/include/string.h" extern char * strstr ( const char * __haystack , const char * __needle ) ; # 345 "/usr/include/string.h" extern char * strtok ( char * __restrict __s , const char * __restrict __delim ) ; # 351 "/usr/include/string.h" extern char * __strtok_r ( char * __restrict __s , const char * __restrict __delim , char * * __restrict __save_ptr ) ; # 357 "/usr/include/string.h" extern char * strtok_r ( char * __restrict __s , const char * __restrict __delim , char * * __restrict __save_ptr ) ; # 396 "/usr/include/string.h" extern size_t strlen ( const char * __s ) ; # 403 "/usr/include/string.h" extern size_t strnlen ( const char * __string , size_t __maxlen ) ; # 410 "/usr/include/string.h" extern char * strerror ( int __errnum ) ; # 420 "/usr/include/string.h" # 423 "/usr/include/string.h" # 429 "/usr/include/string.h" extern int __xpg_strerror_r ( int __errnum , char * __buf , size_t __buflen ) ; # 442 "/usr/include/string.h" extern char * strerror_l ( int __errnum , __locale_t __l ) ; # 448 "/usr/include/string.h" extern void __bzero ( void * __s , size_t __n ) ; # 452 "/usr/include/string.h" extern void bcopy ( const void * __src , void * __dest , size_t __n ) ; # 456 "/usr/include/string.h" extern void bzero ( void * __s , size_t __n ) ; # 459 "/usr/include/string.h" extern int bcmp ( const void * __s1 , const void * __s2 , size_t __n ) ; # 463 "/usr/include/string.h" # 487 "/usr/include/string.h" extern char * index ( const char * __s , int __c ) ; # 491 "/usr/include/string.h" # 515 "/usr/include/string.h" extern char * rindex ( const char * __s , int __c ) ; # 520 "/usr/include/string.h" extern int ffs ( int __i ) __attribute__ ( ( __const__ ) ) ; # 524 "/usr/include/string.h" # 533 "/usr/include/string.h" extern int strcasecmp ( const char * __s1 , const char * __s2 ) ; # 537 "/usr/include/string.h" extern int strncasecmp ( const char * __s1 , const char * __s2 , size_t __n ) ; # 556 "/usr/include/string.h" extern char * strsep ( char * * __restrict __stringp , const char * __restrict __delim ) ; # 563 "/usr/include/string.h" extern char * strsignal ( int __sig ) ; # 566 "/usr/include/string.h" extern char * __stpcpy ( char * __restrict __dest , const char * __restrict __src ) ; extern char * stpcpy ( char * __restrict __dest , const char * __restrict __src ) ; # 573 "/usr/include/string.h" extern char * __stpncpy ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; extern char * stpncpy ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/stdlib.h" # 17 "/usr/include/stdlib.h" # 21 "/usr/include/stdlib.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 26 "/usr/include/stdlib.h" # 27 "/usr/include/stdlib.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 290 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 310 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 326 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef int wchar_t ; # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 34 "/usr/include/stdlib.h" # 97 "/usr/include/stdlib.h" typedef struct { int quot ; int rem ; } div_t ; # 104 "/usr/include/stdlib.h" # 106 "/usr/include/stdlib.h" typedef struct { long int quot ; long int rem ; } ldiv_t ; # 117 "/usr/include/stdlib.h" typedef struct { long long int quot ; long long int rem ; } lldiv_t ; # 128 "/usr/include/stdlib.h" # 133 "/usr/include/stdlib.h" # 138 "/usr/include/stdlib.h" # 140 "/usr/include/stdlib.h" extern size_t __ctype_get_mb_cur_max ( void ) ; # 144 "/usr/include/stdlib.h" extern double atof ( const char * __nptr ) ; extern int atoi ( const char * __nptr ) ; extern long int atol ( const char * __nptr ) ; # 157 "/usr/include/stdlib.h" extern long long int atoll ( const char * __nptr ) ; # 164 "/usr/include/stdlib.h" extern double strtod ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 172 "/usr/include/stdlib.h" extern float strtof ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 176 "/usr/include/stdlib.h" extern long double strtold ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 183 "/usr/include/stdlib.h" extern long int strtol ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; extern unsigned long int strtoul ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 194 "/usr/include/stdlib.h" # 196 "/usr/include/stdlib.h" extern long long int strtoq ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 201 "/usr/include/stdlib.h" extern unsigned long long int strtouq ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 208 "/usr/include/stdlib.h" # 210 "/usr/include/stdlib.h" extern long long int strtoll ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 215 "/usr/include/stdlib.h" extern unsigned long long int strtoull ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 310 "/usr/include/stdlib.h" extern char * l64a ( long int __n ) ; # 313 "/usr/include/stdlib.h" extern long int a64l ( const char * __s ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 321 "/usr/include/stdlib.h" # 325 "/usr/include/stdlib.h" extern long int random ( void ) ; # 329 "/usr/include/stdlib.h" extern void srandom ( unsigned int __seed ) ; # 335 "/usr/include/stdlib.h" extern char * initstate ( unsigned int __seed , char * __statebuf , size_t __statelen ) ; # 340 "/usr/include/stdlib.h" extern char * setstate ( char * __statebuf ) ; # 347 "/usr/include/stdlib.h" # 349 "/usr/include/stdlib.h" struct random_data { int32_t * fptr ; int32_t * rptr ; int32_t * state ; int rand_type ; int rand_deg ; int rand_sep ; int32_t * end_ptr ; } ; # 360 "/usr/include/stdlib.h" extern int random_r ( struct random_data * __restrict __buf , int32_t * __restrict __result ) ; # 363 "/usr/include/stdlib.h" extern int srandom_r ( unsigned int __seed , struct random_data * __buf ) ; # 366 "/usr/include/stdlib.h" extern int initstate_r ( unsigned int __seed , char * __restrict __statebuf , size_t __statelen , struct random_data * __restrict __buf ) ; # 371 "/usr/include/stdlib.h" extern int setstate_r ( char * __restrict __statebuf , struct random_data * __restrict __buf ) ; # 379 "/usr/include/stdlib.h" extern int rand ( void ) ; extern void srand ( unsigned int __seed ) ; # 386 "/usr/include/stdlib.h" extern int rand_r ( unsigned int * __seed ) ; # 392 "/usr/include/stdlib.h" # 394 "/usr/include/stdlib.h" extern double drand48 ( void ) ; extern double erand48 ( unsigned short int __xsubi [ 3 ] ) ; # 398 "/usr/include/stdlib.h" extern long int lrand48 ( void ) ; extern long int nrand48 ( unsigned short int __xsubi [ 3 ] ) ; # 403 "/usr/include/stdlib.h" extern long int mrand48 ( void ) ; extern long int jrand48 ( unsigned short int __xsubi [ 3 ] ) ; # 408 "/usr/include/stdlib.h" extern void srand48 ( long int __seedval ) ; extern unsigned short int * seed48 ( unsigned short int __seed16v [ 3 ] ) ; extern void lcong48 ( unsigned short int __param [ 7 ] ) ; # 417 "/usr/include/stdlib.h" struct drand48_data { unsigned short int __x [ 3 ] ; unsigned short int __old_x [ 3 ] ; unsigned short int __c ; unsigned short int __init ; unsigned long long int __a ; } ; # 427 "/usr/include/stdlib.h" extern int drand48_r ( struct drand48_data * __restrict __buffer , double * __restrict __result ) ; extern int erand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , double * __restrict __result ) ; # 434 "/usr/include/stdlib.h" extern int lrand48_r ( struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; extern int nrand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; # 443 "/usr/include/stdlib.h" extern int mrand48_r ( struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; extern int jrand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; # 452 "/usr/include/stdlib.h" extern int srand48_r ( long int __seedval , struct drand48_data * __buffer ) ; # 456 "/usr/include/stdlib.h" extern int seed48_r ( unsigned short int __seed16v [ 3 ] , struct drand48_data * __buffer ) ; # 459 "/usr/include/stdlib.h" extern int lcong48_r ( unsigned short int __param [ 7 ] , struct drand48_data * __buffer ) ; # 470 "/usr/include/stdlib.h" extern void * malloc ( size_t __size ) ; extern void * calloc ( size_t __nmemb , size_t __size ) ; # 481 "/usr/include/stdlib.h" # 484 "/usr/include/stdlib.h" extern void * realloc ( void * __ptr , size_t __size ) ; extern void free ( void * __ptr ) ; # 492 "/usr/include/stdlib.h" extern void cfree ( void * __ptr ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 29 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 33 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 39 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" extern void * __alloca ( size_t __size ) ; extern void * alloca ( size_t __size ) ; extern void * __builtin_alloca ( size_t __size ) ; # 498 "/usr/include/stdlib.h" # 501 "/usr/include/stdlib.h" extern void * valloc ( size_t __size ) ; # 506 "/usr/include/stdlib.h" extern int posix_memalign ( void * * __memptr , size_t __alignment , size_t __size ) ; # 512 "/usr/include/stdlib.h" extern void abort ( void ) __attribute__ ( ( __noreturn__ ) ) ; # 516 "/usr/include/stdlib.h" extern int atexit ( void ( * __func ) ( void ) ) ; # 534 "/usr/include/stdlib.h" extern int on_exit ( void ( * __func ) ( int __status , void * __arg ) , void * __arg ) ; # 542 "/usr/include/stdlib.h" extern void exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 558 "/usr/include/stdlib.h" extern void _Exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 565 "/usr/include/stdlib.h" extern char * getenv ( const char * __name ) ; # 570 "/usr/include/stdlib.h" extern char * __secure_getenv ( const char * __name ) ; # 575 "/usr/include/stdlib.h" # 577 "/usr/include/stdlib.h" extern int putenv ( char * __string ) ; # 583 "/usr/include/stdlib.h" extern int setenv ( const char * __name , const char * __value , int __replace ) ; # 587 "/usr/include/stdlib.h" extern int unsetenv ( const char * __name ) ; # 594 "/usr/include/stdlib.h" extern int clearenv ( void ) ; # 603 "/usr/include/stdlib.h" extern char * mktemp ( char * __template ) ; # 613 "/usr/include/stdlib.h" # 615 "/usr/include/stdlib.h" extern int mkstemp ( char * __template ) ; # 635 "/usr/include/stdlib.h" # 637 "/usr/include/stdlib.h" extern int mkstemps ( char * __template , int __suffixlen ) ; # 657 "/usr/include/stdlib.h" extern char * mkdtemp ( char * __template ) ; # 711 "/usr/include/stdlib.h" extern int system ( const char * __command ) ; # 728 "/usr/include/stdlib.h" extern char * realpath ( const char * __restrict __name , char * __restrict __resolved ) ; # 734 "/usr/include/stdlib.h" # 737 "/usr/include/stdlib.h" typedef int ( * __compar_fn_t ) ( const void * , const void * ) ; # 749 "/usr/include/stdlib.h" extern void * bsearch ( const void * __key , const void * __base , size_t __nmemb , size_t __size , __compar_fn_t __compar ) ; # 755 "/usr/include/stdlib.h" extern void qsort ( void * __base , size_t __nmemb , size_t __size , __compar_fn_t __compar ) ; # 765 "/usr/include/stdlib.h" extern int abs ( int __x ) __attribute__ ( ( __const__ ) ) ; extern long int labs ( long int __x ) __attribute__ ( ( __const__ ) ) ; # 771 "/usr/include/stdlib.h" extern long long int llabs ( long long int __x ) __attribute__ ( ( __const__ ) ) ; # 778 "/usr/include/stdlib.h" extern div_t div ( int __numer , int __denom ) __attribute__ ( ( __const__ ) ) ; extern ldiv_t ldiv ( long int __numer , long int __denom ) __attribute__ ( ( __const__ ) ) ; # 788 "/usr/include/stdlib.h" extern lldiv_t lldiv ( long long int __numer , long long int __denom ) __attribute__ ( ( __const__ ) ) ; # 797 "/usr/include/stdlib.h" # 801 "/usr/include/stdlib.h" extern char * ecvt ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; # 807 "/usr/include/stdlib.h" extern char * fcvt ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; # 813 "/usr/include/stdlib.h" extern char * gcvt ( double __value , int __ndigit , char * __buf ) ; # 819 "/usr/include/stdlib.h" extern char * qecvt ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; extern char * qfcvt ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; extern char * qgcvt ( long double __value , int __ndigit , char * __buf ) ; # 831 "/usr/include/stdlib.h" extern int ecvt_r ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; extern int fcvt_r ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; # 839 "/usr/include/stdlib.h" extern int qecvt_r ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; extern int qfcvt_r ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; # 853 "/usr/include/stdlib.h" extern int mblen ( const char * __s , size_t __n ) ; # 856 "/usr/include/stdlib.h" extern int mbtowc ( wchar_t * __restrict __pwc , const char * __restrict __s , size_t __n ) ; # 860 "/usr/include/stdlib.h" extern int wctomb ( char * __s , wchar_t __wchar ) ; # 864 "/usr/include/stdlib.h" extern size_t mbstowcs ( wchar_t * __restrict __pwcs , const char * __restrict __s , size_t __n ) ; extern size_t wcstombs ( char * __restrict __s , const wchar_t * __restrict __pwcs , size_t __n ) ; # 878 "/usr/include/stdlib.h" extern int rpmatch ( const char * __response ) ; # 903 "/usr/include/stdlib.h" # 906 "/usr/include/stdlib.h" extern int posix_openpt ( int __oflag ) ; # 941 "/usr/include/stdlib.h" extern int getloadavg ( double __loadavg [ ] , int __nelem ) ; # 947 "/usr/include/stdlib.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.headers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -mp -fast /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.headers/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.headers/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.headers/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.headers/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 5 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/stat.h" # 18 "/usr/include/sys/stat.h" # 22 "/usr/include/sys/stat.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/sys/stat.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 30 "/usr/include/sys/stat.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 40 "/usr/include/sys/stat.h" # 44 "/usr/include/sys/stat.h" # 1 "/usr/include/bits/stat.h" # 17 "/usr/include/bits/stat.h" # 23 "/usr/include/bits/stat.h" # 37 "/usr/include/bits/stat.h" # 43 "/usr/include/bits/stat.h" struct stat { __dev_t st_dev ; # 50 "/usr/include/bits/stat.h" __ino_t st_ino ; # 58 "/usr/include/bits/stat.h" __nlink_t st_nlink ; __mode_t st_mode ; # 61 "/usr/include/bits/stat.h" __uid_t st_uid ; __gid_t st_gid ; # 64 "/usr/include/bits/stat.h" int __pad0 ; # 66 "/usr/include/bits/stat.h" __dev_t st_rdev ; # 71 "/usr/include/bits/stat.h" __off_t st_size ; # 75 "/usr/include/bits/stat.h" __blksize_t st_blksize ; # 77 "/usr/include/bits/stat.h" __blkcnt_t st_blocks ; # 82 "/usr/include/bits/stat.h" # 87 "/usr/include/bits/stat.h" struct timespec st_atim ; struct timespec st_mtim ; struct timespec st_ctim ; # 103 "/usr/include/bits/stat.h" long int __unused [ 3 ] ; # 112 "/usr/include/bits/stat.h" } ; # 171 "/usr/include/bits/stat.h" # 174 "/usr/include/bits/stat.h" # 177 "/usr/include/bits/stat.h" # 181 "/usr/include/bits/stat.h" # 191 "/usr/include/bits/stat.h" # 196 "/usr/include/bits/stat.h" # 108 "/usr/include/sys/stat.h" # 127 "/usr/include/sys/stat.h" # 154 "/usr/include/sys/stat.h" # 162 "/usr/include/sys/stat.h" # 168 "/usr/include/sys/stat.h" # 175 "/usr/include/sys/stat.h" # 187 "/usr/include/sys/stat.h" # 193 "/usr/include/sys/stat.h" # 198 "/usr/include/sys/stat.h" # 208 "/usr/include/sys/stat.h" extern int stat ( const char * __restrict __file , struct stat * __restrict __buf ) ; # 213 "/usr/include/sys/stat.h" extern int fstat ( int __fd , struct stat * __buf ) ; # 236 "/usr/include/sys/stat.h" # 238 "/usr/include/sys/stat.h" extern int fstatat ( int __fd , const char * __restrict __file , struct stat * __restrict __buf , int __flag ) ; # 262 "/usr/include/sys/stat.h" extern int lstat ( const char * __restrict __file , struct stat * __restrict __buf ) ; # 283 "/usr/include/sys/stat.h" extern int chmod ( const char * __file , __mode_t __mode ) ; # 290 "/usr/include/sys/stat.h" extern int lchmod ( const char * __file , __mode_t __mode ) ; # 295 "/usr/include/sys/stat.h" # 297 "/usr/include/sys/stat.h" extern int fchmod ( int __fd , __mode_t __mode ) ; # 302 "/usr/include/sys/stat.h" extern int fchmodat ( int __fd , const char * __file , __mode_t __mode , int __flag ) ; # 311 "/usr/include/sys/stat.h" extern __mode_t umask ( __mode_t __mask ) ; # 320 "/usr/include/sys/stat.h" extern int mkdir ( const char * __path , __mode_t __mode ) ; # 327 "/usr/include/sys/stat.h" extern int mkdirat ( int __fd , const char * __path , __mode_t __mode ) ; # 334 "/usr/include/sys/stat.h" # 336 "/usr/include/sys/stat.h" extern int mknod ( const char * __path , __mode_t __mode , __dev_t __dev ) ; # 342 "/usr/include/sys/stat.h" extern int mknodat ( int __fd , const char * __path , __mode_t __mode , __dev_t __dev ) ; # 349 "/usr/include/sys/stat.h" extern int mkfifo ( const char * __path , __mode_t __mode ) ; # 356 "/usr/include/sys/stat.h" extern int mkfifoat ( int __fd , const char * __path , __mode_t __mode ) ; # 360 "/usr/include/sys/stat.h" # 363 "/usr/include/sys/stat.h" extern int utimensat ( int __fd , const char * __path , const struct timespec __times [ 2 ] , int __flags ) ; # 371 "/usr/include/sys/stat.h" extern int futimens ( int __fd , const struct timespec __times [ 2 ] ) ; # 374 "/usr/include/sys/stat.h" # 388 "/usr/include/sys/stat.h" # 397 "/usr/include/sys/stat.h" # 399 "/usr/include/sys/stat.h" extern int __fxstat ( int __ver , int __fildes , struct stat * __stat_buf ) ; extern int __xstat ( int __ver , const char * __filename , struct stat * __stat_buf ) ; extern int __lxstat ( int __ver , const char * __filename , struct stat * __stat_buf ) ; extern int __fxstatat ( int __ver , int __fildes , const char * __filename , struct stat * __stat_buf , int __flag ) ; # 442 "/usr/include/sys/stat.h" extern int __xmknod ( int __ver , const char * __path , __mode_t __mode , __dev_t * __dev ) ; # 445 "/usr/include/sys/stat.h" extern int __xmknodat ( int __ver , int __fd , const char * __path , __mode_t __mode , __dev_t * __dev ) ; # 6 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" ================================================================================ TEST checkSysWait from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.headers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -mp -fast /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 29 "/usr/include/time.h" # 35 "/usr/include/time.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 39 "/usr/include/time.h" # 41 "/usr/include/time.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 30 "/usr/include/bits/time.h" # 33 "/usr/include/bits/time.h" # 45 "/usr/include/bits/time.h" # 47 "/usr/include/bits/time.h" # 49 "/usr/include/bits/time.h" # 51 "/usr/include/bits/time.h" # 54 "/usr/include/bits/time.h" # 43 "/usr/include/time.h" # 44 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 57 "/usr/include/time.h" # 59 "/usr/include/time.h" typedef __clock_t clock_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 132 "/usr/include/time.h" struct tm { int tm_sec ; int tm_min ; int tm_hour ; int tm_mday ; int tm_mon ; int tm_year ; int tm_wday ; int tm_yday ; int tm_isdst ; # 146 "/usr/include/time.h" long int tm_gmtoff ; const char * tm_zone ; # 152 "/usr/include/time.h" } ; # 160 "/usr/include/time.h" struct itimerspec { struct timespec it_interval ; struct timespec it_value ; } ; # 167 "/usr/include/time.h" struct sigevent ; # 174 "/usr/include/time.h" typedef __pid_t pid_t ; # 182 "/usr/include/time.h" extern clock_t clock ( void ) ; # 185 "/usr/include/time.h" extern time_t time ( time_t * __timer ) ; # 188 "/usr/include/time.h" extern double difftime ( time_t __time1 , time_t __time0 ) __attribute__ ( ( __const__ ) ) ; # 192 "/usr/include/time.h" extern time_t mktime ( struct tm * __tp ) ; # 198 "/usr/include/time.h" extern size_t strftime ( char * __restrict __s , size_t __maxsize , const char * __restrict __format , const struct tm * __restrict __tp ) ; # 214 "/usr/include/time.h" # 1 "/usr/include/xlocale.h" # 19 "/usr/include/xlocale.h" # 27 "/usr/include/xlocale.h" typedef struct __locale_struct { struct locale_data * __locales [ 13 ] ; # 33 "/usr/include/xlocale.h" const unsigned short int * __ctype_b ; const int * __ctype_tolower ; const int * __ctype_toupper ; # 38 "/usr/include/xlocale.h" const char * __names [ 13 ] ; } * __locale_t ; # 42 "/usr/include/xlocale.h" typedef __locale_t locale_t ; # 216 "/usr/include/time.h" # 217 "/usr/include/time.h" extern size_t strftime_l ( char * __restrict __s , size_t __maxsize , const char * __restrict __format , const struct tm * __restrict __tp , __locale_t __loc ) ; # 232 "/usr/include/time.h" extern struct tm * gmtime ( const time_t * __timer ) ; # 236 "/usr/include/time.h" extern struct tm * localtime ( const time_t * __timer ) ; # 242 "/usr/include/time.h" extern struct tm * gmtime_r ( const time_t * __restrict __timer , struct tm * __restrict __tp ) ; # 247 "/usr/include/time.h" extern struct tm * localtime_r ( const time_t * __restrict __timer , struct tm * __restrict __tp ) ; # 254 "/usr/include/time.h" extern char * asctime ( const struct tm * __tp ) ; # 257 "/usr/include/time.h" extern char * ctime ( const time_t * __timer ) ; # 262 "/usr/include/time.h" # 265 "/usr/include/time.h" extern char * asctime_r ( const struct tm * __restrict __tp , char * __restrict __buf ) ; # 269 "/usr/include/time.h" extern char * ctime_r ( const time_t * __restrict __timer , char * __restrict __buf ) ; # 275 "/usr/include/time.h" extern char * __tzname [ 2 ] ; extern int __daylight ; extern long int __timezone ; # 282 "/usr/include/time.h" extern char * tzname [ 2 ] ; # 286 "/usr/include/time.h" extern void tzset ( void ) ; # 291 "/usr/include/time.h" extern int daylight ; extern long int timezone ; # 297 "/usr/include/time.h" extern int stime ( const time_t * __when ) ; # 303 "/usr/include/time.h" # 310 "/usr/include/time.h" # 312 "/usr/include/time.h" extern time_t timegm ( struct tm * __tp ) ; # 315 "/usr/include/time.h" extern time_t timelocal ( struct tm * __tp ) ; # 318 "/usr/include/time.h" extern int dysize ( int __year ) __attribute__ ( ( __const__ ) ) ; # 327 "/usr/include/time.h" extern int nanosleep ( const struct timespec * __requested_time , struct timespec * __remaining ) ; # 332 "/usr/include/time.h" extern int clock_getres ( clockid_t __clock_id , struct timespec * __res ) ; # 335 "/usr/include/time.h" extern int clock_gettime ( clockid_t __clock_id , struct timespec * __tp ) ; # 338 "/usr/include/time.h" extern int clock_settime ( clockid_t __clock_id , const struct timespec * __tp ) ; # 346 "/usr/include/time.h" extern int clock_nanosleep ( clockid_t __clock_id , int __flags , const struct timespec * __req , struct timespec * __rem ) ; # 351 "/usr/include/time.h" extern int clock_getcpuclockid ( pid_t __pid , clockid_t * __clock_id ) ; # 356 "/usr/include/time.h" extern int timer_create ( clockid_t __clock_id , struct sigevent * __restrict __evp , timer_t * __restrict __timerid ) ; # 361 "/usr/include/time.h" extern int timer_delete ( timer_t __timerid ) ; # 364 "/usr/include/time.h" extern int timer_settime ( timer_t __timerid , int __flags , const struct itimerspec * __restrict __value , struct itimerspec * __restrict __ovalue ) ; # 369 "/usr/include/time.h" extern int timer_gettime ( timer_t __timerid , struct itimerspec * __value ) ; # 373 "/usr/include/time.h" extern int timer_getoverrun ( timer_t __timerid ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/time.h" # 18 "/usr/include/sys/time.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/sys/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 26 "/usr/include/sys/time.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 28 "/usr/include/sys/time.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 30 "/usr/include/sys/time.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 32 "/usr/include/sys/time.h" # 56 "/usr/include/sys/time.h" struct timezone { int tz_minuteswest ; int tz_dsttime ; } ; # 63 "/usr/include/sys/time.h" typedef struct timezone * __restrict __timezone_ptr_t ; # 72 "/usr/include/sys/time.h" extern int gettimeofday ( struct timeval * __restrict __tv , __timezone_ptr_t __tz ) ; # 78 "/usr/include/sys/time.h" extern int settimeofday ( const struct timeval * __tv , const struct timezone * __tz ) ; # 86 "/usr/include/sys/time.h" extern int adjtime ( const struct timeval * __delta , struct timeval * __olddelta ) ; # 92 "/usr/include/sys/time.h" enum __itimer_which { ITIMER_REAL = 0 , # 98 "/usr/include/sys/time.h" ITIMER_VIRTUAL = 1 , # 101 "/usr/include/sys/time.h" ITIMER_PROF = 2 # 105 "/usr/include/sys/time.h" } ; # 108 "/usr/include/sys/time.h" struct itimerval { struct timeval it_interval ; struct timeval it_value ; } ; # 122 "/usr/include/sys/time.h" typedef int __itimer_which_t ; # 126 "/usr/include/sys/time.h" extern int getitimer ( __itimer_which_t __which , struct itimerval * __value ) ; # 132 "/usr/include/sys/time.h" extern int setitimer ( __itimer_which_t __which , const struct itimerval * __restrict __new , struct itimerval * __restrict __old ) ; # 139 "/usr/include/sys/time.h" extern int utimes ( const char * __file , const struct timeval __tvp [ 2 ] ) ; # 144 "/usr/include/sys/time.h" extern int lutimes ( const char * __file , const struct timeval __tvp [ 2 ] ) ; # 148 "/usr/include/sys/time.h" extern int futimes ( int __fd , const struct timeval __tvp [ 2 ] ) ; # 163 "/usr/include/sys/time.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_TIME_H" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.headers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -mp -fast /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" # 29 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double tgamma ( double ) ; float tgammaf ( float ) ; # 38 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double round ( double ) ; float roundf ( float ) ; long int lround ( double ) ; long int lroundf ( float ) ; long long int llround ( double ) ; long long int llroundf ( float ) ; # 1 "/usr/include/math.h" # 19 "/usr/include/math.h" # 23 "/usr/include/math.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 29 "/usr/include/math.h" # 33 "/usr/include/math.h" # 1 "/usr/include/bits/huge_val.h" # 20 "/usr/include/bits/huge_val.h" # 26 "/usr/include/bits/huge_val.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 42 "/usr/include/bits/huge_val.h" # 43 "/usr/include/bits/huge_val.h" typedef union { unsigned char __c [ 8 ] ; double __d ; } __huge_val_t ; # 52 "/usr/include/bits/huge_val.h" static __huge_val_t __huge_val = { { 0 , 0 , 0 , 0 , 0 , 0 , 0xf0 , 0x7f } } ; # 35 "/usr/include/math.h" # 1 "/usr/include/bits/huge_valf.h" # 20 "/usr/include/bits/huge_valf.h" # 26 "/usr/include/bits/huge_valf.h" # 41 "/usr/include/bits/huge_valf.h" typedef union { unsigned char __c [ 4 ] ; float __f ; } __huge_valf_t ; # 50 "/usr/include/bits/huge_valf.h" static __huge_valf_t __huge_valf = { { 0 , 0 , 0x80 , 0x7f } } ; # 37 "/usr/include/math.h" # 1 "/usr/include/bits/huge_vall.h" # 19 "/usr/include/bits/huge_vall.h" # 38 "/usr/include/math.h" # 39 "/usr/include/math.h" # 1 "/usr/include/bits/inf.h" # 18 "/usr/include/bits/inf.h" # 24 "/usr/include/bits/inf.h" # 41 "/usr/include/math.h" # 42 "/usr/include/math.h" # 1 "/usr/include/bits/nan.h" # 18 "/usr/include/bits/nan.h" # 25 "/usr/include/bits/nan.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 41 "/usr/include/bits/nan.h" # 49 "/usr/include/bits/nan.h" static union { unsigned char __c [ 4 ] ; float __d ; } __nan_union __attribute__ ( ( __unused__ ) ) = { { 0 , 0 , 0xc0 , 0x7f } } ; # 44 "/usr/include/math.h" # 46 "/usr/include/math.h" # 1 "/usr/include/bits/mathdef.h" # 17 "/usr/include/bits/mathdef.h" # 1 "/usr/include/bits/wordsize.h" # 27 "/usr/include/bits/mathdef.h" # 30 "/usr/include/bits/mathdef.h" typedef float float_t ; typedef double double_t ; # 44 "/usr/include/bits/mathdef.h" # 48 "/usr/include/math.h" # 52 "/usr/include/math.h" # 1 "/usr/include/bits/mathcalls.h" # 18 "/usr/include/bits/mathcalls.h" # 44 "/usr/include/bits/mathcalls.h" # 51 "/usr/include/bits/mathcalls.h" # 54 "/usr/include/bits/mathcalls.h" extern double acos ( double __x ) ; extern double __acos ( double __x ) ; extern double asin ( double __x ) ; extern double __asin ( double __x ) ; extern double atan ( double __x ) ; extern double __atan ( double __x ) ; extern double atan2 ( double __y , double __x ) ; extern double __atan2 ( double __y , double __x ) ; # 63 "/usr/include/bits/mathcalls.h" extern double cos ( double __x ) ; extern double __cos ( double __x ) ; extern double sin ( double __x ) ; extern double __sin ( double __x ) ; extern double tan ( double __x ) ; extern double __tan ( double __x ) ; # 70 "/usr/include/bits/mathcalls.h" # 72 "/usr/include/bits/mathcalls.h" extern double cosh ( double __x ) ; extern double __cosh ( double __x ) ; extern double sinh ( double __x ) ; extern double __sinh ( double __x ) ; extern double tanh ( double __x ) ; extern double __tanh ( double __x ) ; # 88 "/usr/include/bits/mathcalls.h" extern double acosh ( double __x ) ; extern double __acosh ( double __x ) ; extern double asinh ( double __x ) ; extern double __asinh ( double __x ) ; extern double atanh ( double __x ) ; extern double __atanh ( double __x ) ; # 97 "/usr/include/bits/mathcalls.h" # 100 "/usr/include/bits/mathcalls.h" extern double exp ( double __x ) ; extern double __exp ( double __x ) ; # 103 "/usr/include/bits/mathcalls.h" extern double frexp ( double __x , int * __exponent ) ; extern double __frexp ( double __x , int * __exponent ) ; # 106 "/usr/include/bits/mathcalls.h" extern double ldexp ( double __x , int __exponent ) ; extern double __ldexp ( double __x , int __exponent ) ; # 109 "/usr/include/bits/mathcalls.h" extern double log ( double __x ) ; extern double __log ( double __x ) ; # 112 "/usr/include/bits/mathcalls.h" extern double log10 ( double __x ) ; extern double __log10 ( double __x ) ; # 115 "/usr/include/bits/mathcalls.h" extern double modf ( double __x , double * __iptr ) ; extern double __modf ( double __x , double * __iptr ) ; # 128 "/usr/include/bits/mathcalls.h" extern double expm1 ( double __x ) ; extern double __expm1 ( double __x ) ; # 131 "/usr/include/bits/mathcalls.h" extern double log1p ( double __x ) ; extern double __log1p ( double __x ) ; # 134 "/usr/include/bits/mathcalls.h" extern double logb ( double __x ) ; extern double __logb ( double __x ) ; # 141 "/usr/include/bits/mathcalls.h" extern double exp2 ( double __x ) ; extern double __exp2 ( double __x ) ; # 144 "/usr/include/bits/mathcalls.h" extern double log2 ( double __x ) ; extern double __log2 ( double __x ) ; # 150 "/usr/include/bits/mathcalls.h" # 153 "/usr/include/bits/mathcalls.h" extern double pow ( double __x , double __y ) ; extern double __pow ( double __x , double __y ) ; # 156 "/usr/include/bits/mathcalls.h" extern double sqrt ( double __x ) ; extern double __sqrt ( double __x ) ; # 162 "/usr/include/bits/mathcalls.h" extern double hypot ( double __x , double __y ) ; extern double __hypot ( double __x , double __y ) ; # 169 "/usr/include/bits/mathcalls.h" extern double cbrt ( double __x ) ; extern double __cbrt ( double __x ) ; # 175 "/usr/include/bits/mathcalls.h" # 178 "/usr/include/bits/mathcalls.h" extern double ceil ( double __x ) __attribute__ ( ( __const__ ) ) ; extern double __ceil ( double __x ) __attribute__ ( ( __const__ ) ) ; # 181 "/usr/include/bits/mathcalls.h" extern double fabs ( double __x ) __attribute__ ( ( __const__ ) ) ; extern double __fabs ( double __x ) __attribute__ ( ( __const__ ) ) ; # 184 "/usr/include/bits/mathcalls.h" extern double floor ( double __x ) __attribute__ ( ( __const__ ) ) ; extern double __floor ( double __x ) __attribute__ ( ( __const__ ) ) ; # 187 "/usr/include/bits/mathcalls.h" extern double fmod ( double __x , double __y ) ; extern double __fmod ( double __x , double __y ) ; # 192 "/usr/include/bits/mathcalls.h" extern int __isinf ( double __value ) __attribute__ ( ( __const__ ) ) ; # 195 "/usr/include/bits/mathcalls.h" extern int __finite ( double __value ) __attribute__ ( ( __const__ ) ) ; # 201 "/usr/include/bits/mathcalls.h" extern int isinf ( double __value ) __attribute__ ( ( __const__ ) ) ; # 204 "/usr/include/bits/mathcalls.h" extern int finite ( double __value ) __attribute__ ( ( __const__ ) ) ; # 207 "/usr/include/bits/mathcalls.h" extern double drem ( double __x , double __y ) ; extern double __drem ( double __x , double __y ) ; # 211 "/usr/include/bits/mathcalls.h" extern double significand ( double __x ) ; extern double __significand ( double __x ) ; # 217 "/usr/include/bits/mathcalls.h" extern double copysign ( double __x , double __y ) __attribute__ ( ( __const__ ) ) ; extern double __copysign ( double __x , double __y ) __attribute__ ( ( __const__ ) ) ; # 224 "/usr/include/bits/mathcalls.h" extern double nan ( const char * __tagb ) __attribute__ ( ( __const__ ) ) ; extern double __nan ( const char * __tagb ) __attribute__ ( ( __const__ ) ) ; # 230 "/usr/include/bits/mathcalls.h" extern int __isnan ( double __value ) __attribute__ ( ( __const__ ) ) ; # 234 "/usr/include/bits/mathcalls.h" extern int isnan ( double __value ) __attribute__ ( ( __const__ ) ) ; # 237 "/usr/include/bits/mathcalls.h" extern double j0 ( double ) ; extern double __j0 ( double ) ; extern double j1 ( double ) ; extern double __j1 ( double ) ; extern double jn ( int , double ) ; extern double __jn ( int , double ) ; extern double y0 ( double ) ; extern double __y0 ( double ) ; extern double y1 ( double ) ; extern double __y1 ( double ) ; extern double yn ( int , double ) ; extern double __yn ( int , double ) ; # 249 "/usr/include/bits/mathcalls.h" extern double erf ( double ) ; extern double __erf ( double ) ; extern double erfc ( double ) ; extern double __erfc ( double ) ; extern double lgamma ( double ) ; extern double __lgamma ( double ) ; # 258 "/usr/include/bits/mathcalls.h" extern double tgamma ( double ) ; extern double __tgamma ( double ) ; # 264 "/usr/include/bits/mathcalls.h" extern double gamma ( double ) ; extern double __gamma ( double ) ; # 271 "/usr/include/bits/mathcalls.h" extern double lgamma_r ( double , int * __signgamp ) ; extern double __lgamma_r ( double , int * __signgamp ) ; # 279 "/usr/include/bits/mathcalls.h" extern double rint ( double __x ) ; extern double __rint ( double __x ) ; # 282 "/usr/include/bits/mathcalls.h" extern double nextafter ( double __x , double __y ) __attribute__ ( ( __const__ ) ) ; extern double __nextafter ( double __x , double __y ) __attribute__ ( ( __const__ ) ) ; # 285 "/usr/include/bits/mathcalls.h" extern double nexttoward ( double __x , long double __y ) __attribute__ ( ( __const__ ) ) ; extern double __nexttoward ( double __x , long double __y ) __attribute__ ( ( __const__ ) ) ; # 288 "/usr/include/bits/mathcalls.h" extern double remainder ( double __x , double __y ) ; extern double __remainder ( double __x , double __y ) ; # 292 "/usr/include/bits/mathcalls.h" extern double scalbn ( double __x , int __n ) ; extern double __scalbn ( double __x , int __n ) ; # 296 "/usr/include/bits/mathcalls.h" extern int ilogb ( double __x ) ; extern int __ilogb ( double __x ) ; # 301 "/usr/include/bits/mathcalls.h" extern double scalbln ( double __x , long int __n ) ; extern double __scalbln ( double __x , long int __n ) ; # 305 "/usr/include/bits/mathcalls.h" extern double nearbyint ( double __x ) ; extern double __nearbyint ( double __x ) ; # 309 "/usr/include/bits/mathcalls.h" extern double round ( double __x ) __attribute__ ( ( __const__ ) ) ; extern double __round ( double __x ) __attribute__ ( ( __const__ ) ) ; # 313 "/usr/include/bits/mathcalls.h" extern double trunc ( double __x ) __attribute__ ( ( __const__ ) ) ; extern double __trunc ( double __x ) __attribute__ ( ( __const__ ) ) ; # 318 "/usr/include/bits/mathcalls.h" extern double remquo ( double __x , double __y , int * __quo ) ; extern double __remquo ( double __x , double __y , int * __quo ) ; # 322 "/usr/include/bits/mathcalls.h" # 325 "/usr/include/bits/mathcalls.h" extern long int lrint ( double __x ) ; extern long int __lrint ( double __x ) ; extern long long int llrint ( double __x ) ; extern long long int __llrint ( double __x ) ; # 330 "/usr/include/bits/mathcalls.h" extern long int lround ( double __x ) ; extern long int __lround ( double __x ) ; extern long long int llround ( double __x ) ; extern long long int __llround ( double __x ) ; # 335 "/usr/include/bits/mathcalls.h" extern double fdim ( double __x , double __y ) ; extern double __fdim ( double __x , double __y ) ; # 338 "/usr/include/bits/mathcalls.h" extern double fmax ( double __x , double __y ) ; extern double __fmax ( double __x , double __y ) ; # 341 "/usr/include/bits/mathcalls.h" extern double fmin ( double __x , double __y ) ; extern double __fmin ( double __x , double __y ) ; # 345 "/usr/include/bits/mathcalls.h" extern int __fpclassify ( double __value ) __attribute__ ( ( __const__ ) ) ; # 349 "/usr/include/bits/mathcalls.h" extern int __signbit ( double __value ) __attribute__ ( ( __const__ ) ) ; # 354 "/usr/include/bits/mathcalls.h" extern double fma ( double __x , double __y , double __z ) ; extern double __fma ( double __x , double __y , double __z ) ; # 363 "/usr/include/bits/mathcalls.h" extern double scalb ( double __x , double __n ) ; extern double __scalb ( double __x , double __n ) ; # 72 "/usr/include/math.h" # 81 "/usr/include/math.h" # 1 "/usr/include/bits/mathcalls.h" # 18 "/usr/include/bits/mathcalls.h" # 44 "/usr/include/bits/mathcalls.h" # 51 "/usr/include/bits/mathcalls.h" # 54 "/usr/include/bits/mathcalls.h" extern float acosf ( float __x ) ; extern float __acosf ( float __x ) ; extern float asinf ( float __x ) ; extern float __asinf ( float __x ) ; extern float atanf ( float __x ) ; extern float __atanf ( float __x ) ; extern float atan2f ( float __y , float __x ) ; extern float __atan2f ( float __y , float __x ) ; # 63 "/usr/include/bits/mathcalls.h" extern float cosf ( float __x ) ; extern float __cosf ( float __x ) ; extern float sinf ( float __x ) ; extern float __sinf ( float __x ) ; extern float tanf ( float __x ) ; extern float __tanf ( float __x ) ; # 70 "/usr/include/bits/mathcalls.h" # 72 "/usr/include/bits/mathcalls.h" extern float coshf ( float __x ) ; extern float __coshf ( float __x ) ; extern float sinhf ( float __x ) ; extern float __sinhf ( float __x ) ; extern float tanhf ( float __x ) ; extern float __tanhf ( float __x ) ; # 88 "/usr/include/bits/mathcalls.h" extern float acoshf ( float __x ) ; extern float __acoshf ( float __x ) ; extern float asinhf ( float __x ) ; extern float __asinhf ( float __x ) ; extern float atanhf ( float __x ) ; extern float __atanhf ( float __x ) ; # 97 "/usr/include/bits/mathcalls.h" # 100 "/usr/include/bits/mathcalls.h" extern float expf ( float __x ) ; extern float __expf ( float __x ) ; # 103 "/usr/include/bits/mathcalls.h" extern float frexpf ( float __x , int * __exponent ) ; extern float __frexpf ( float __x , int * __exponent ) ; # 106 "/usr/include/bits/mathcalls.h" extern float ldexpf ( float __x , int __exponent ) ; extern float __ldexpf ( float __x , int __exponent ) ; # 109 "/usr/include/bits/mathcalls.h" extern float logf ( float __x ) ; extern float __logf ( float __x ) ; # 112 "/usr/include/bits/mathcalls.h" extern float log10f ( float __x ) ; extern float __log10f ( float __x ) ; # 115 "/usr/include/bits/mathcalls.h" extern float modff ( float __x , float * __iptr ) ; extern float __modff ( float __x , float * __iptr ) ; # 128 "/usr/include/bits/mathcalls.h" extern float expm1f ( float __x ) ; extern float __expm1f ( float __x ) ; # 131 "/usr/include/bits/mathcalls.h" extern float log1pf ( float __x ) ; extern float __log1pf ( float __x ) ; # 134 "/usr/include/bits/mathcalls.h" extern float logbf ( float __x ) ; extern float __logbf ( float __x ) ; # 141 "/usr/include/bits/mathcalls.h" extern float exp2f ( float __x ) ; extern float __exp2f ( float __x ) ; # 144 "/usr/include/bits/mathcalls.h" extern float log2f ( float __x ) ; extern float __log2f ( float __x ) ; # 150 "/usr/include/bits/mathcalls.h" # 153 "/usr/include/bits/mathcalls.h" extern float powf ( float __x , float __y ) ; extern float __powf ( float __x , float __y ) ; # 156 "/usr/include/bits/mathcalls.h" extern float sqrtf ( float __x ) ; extern float __sqrtf ( float __x ) ; # 162 "/usr/include/bits/mathcalls.h" extern float hypotf ( float __x , float __y ) ; extern float __hypotf ( float __x , float __y ) ; # 169 "/usr/include/bits/mathcalls.h" extern float cbrtf ( float __x ) ; extern float __cbrtf ( float __x ) ; # 175 "/usr/include/bits/mathcalls.h" # 178 "/usr/include/bits/mathcalls.h" extern float ceilf ( float __x ) __attribute__ ( ( __const__ ) ) ; extern float __ceilf ( float __x ) __attribute__ ( ( __const__ ) ) ; # 181 "/usr/include/bits/mathcalls.h" extern float fabsf ( float __x ) __attribute__ ( ( __const__ ) ) ; extern float __fabsf ( float __x ) __attribute__ ( ( __const__ ) ) ; # 184 "/usr/include/bits/mathcalls.h" extern float floorf ( float __x ) __attribute__ ( ( __const__ ) ) ; extern float __floorf ( float __x ) __attribute__ ( ( __const__ ) ) ; # 187 "/usr/include/bits/mathcalls.h" extern float fmodf ( float __x , float __y ) ; extern float __fmodf ( float __x , float __y ) ; # 192 "/usr/include/bits/mathcalls.h" extern int __isinff ( float __value ) __attribute__ ( ( __const__ ) ) ; # 195 "/usr/include/bits/mathcalls.h" extern int __finitef ( float __value ) __attribute__ ( ( __const__ ) ) ; # 201 "/usr/include/bits/mathcalls.h" extern int isinff ( float __value ) __attribute__ ( ( __const__ ) ) ; # 204 "/usr/include/bits/mathcalls.h" extern int finitef ( float __value ) __attribute__ ( ( __const__ ) ) ; # 207 "/usr/include/bits/mathcalls.h" extern float dremf ( float __x , float __y ) ; extern float __dremf ( float __x , float __y ) ; # 211 "/usr/include/bits/mathcalls.h" extern float significandf ( float __x ) ; extern float __significandf ( float __x ) ; # 217 "/usr/include/bits/mathcalls.h" extern float copysignf ( float __x , float __y ) __attribute__ ( ( __const__ ) ) ; extern float __copysignf ( float __x , float __y ) __attribute__ ( ( __const__ ) ) ; # 224 "/usr/include/bits/mathcalls.h" extern float nanf ( const char * __tagb ) __attribute__ ( ( __const__ ) ) ; extern float __nanf ( const char * __tagb ) __attribute__ ( ( __const__ ) ) ; # 230 "/usr/include/bits/mathcalls.h" extern int __isnanf ( float __value ) __attribute__ ( ( __const__ ) ) ; # 234 "/usr/include/bits/mathcalls.h" extern int isnanf ( float __value ) __attribute__ ( ( __const__ ) ) ; # 237 "/usr/include/bits/mathcalls.h" extern float j0f ( float ) ; extern float __j0f ( float ) ; extern float j1f ( float ) ; extern float __j1f ( float ) ; extern float jnf ( int , float ) ; extern float __jnf ( int , float ) ; extern float y0f ( float ) ; extern float __y0f ( float ) ; extern float y1f ( float ) ; extern float __y1f ( float ) ; extern float ynf ( int , float ) ; extern float __ynf ( int , float ) ; # 249 "/usr/include/bits/mathcalls.h" extern float erff ( float ) ; extern float __erff ( float ) ; extern float erfcf ( float ) ; extern float __erfcf ( float ) ; extern float lgammaf ( float ) ; extern float __lgammaf ( float ) ; # 258 "/usr/include/bits/mathcalls.h" extern float tgammaf ( float ) ; extern float __tgammaf ( float ) ; # 264 "/usr/include/bits/mathcalls.h" extern float gammaf ( float ) ; extern float __gammaf ( float ) ; # 271 "/usr/include/bits/mathcalls.h" extern float lgammaf_r ( float , int * __signgamp ) ; extern float __lgammaf_r ( float , int * __signgamp ) ; # 279 "/usr/include/bits/mathcalls.h" extern float rintf ( float __x ) ; extern float __rintf ( float __x ) ; # 282 "/usr/include/bits/mathcalls.h" extern float nextafterf ( float __x , float __y ) __attribute__ ( ( __const__ ) ) ; extern float __nextafterf ( float __x , float __y ) __attribute__ ( ( __const__ ) ) ; # 285 "/usr/include/bits/mathcalls.h" extern float nexttowardf ( float __x , long double __y ) __attribute__ ( ( __const__ ) ) ; extern float __nexttowardf ( float __x , long double __y ) __attribute__ ( ( __const__ ) ) ; # 288 "/usr/include/bits/mathcalls.h" extern float remainderf ( float __x , float __y ) ; extern float __remainderf ( float __x , float __y ) ; # 292 "/usr/include/bits/mathcalls.h" extern float scalbnf ( float __x , int __n ) ; extern float __scalbnf ( float __x , int __n ) ; # 296 "/usr/include/bits/mathcalls.h" extern int ilogbf ( float __x ) ; extern int __ilogbf ( float __x ) ; # 301 "/usr/include/bits/mathcalls.h" extern float scalblnf ( float __x , long int __n ) ; extern float __scalblnf ( float __x , long int __n ) ; # 305 "/usr/include/bits/mathcalls.h" extern float nearbyintf ( float __x ) ; extern float __nearbyintf ( float __x ) ; # 309 "/usr/include/bits/mathcalls.h" extern float roundf ( float __x ) __attribute__ ( ( __const__ ) ) ; extern float __roundf ( float __x ) __attribute__ ( ( __const__ ) ) ; # 313 "/usr/include/bits/mathcalls.h" extern float truncf ( float __x ) __attribute__ ( ( __const__ ) ) ; extern float __truncf ( float __x ) __attribute__ ( ( __const__ ) ) ; # 318 "/usr/include/bits/mathcalls.h" extern float remquof ( float __x , float __y , int * __quo ) ; extern float __remquof ( float __x , float __y , int * __quo ) ; # 322 "/usr/include/bits/mathcalls.h" # 325 "/usr/include/bits/mathcalls.h" extern long int lrintf ( float __x ) ; extern long int __lrintf ( float __x ) ; extern long long int llrintf ( float __x ) ; extern long long int __llrintf ( float __x ) ; # 330 "/usr/include/bits/mathcalls.h" extern long int lroundf ( float __x ) ; extern long int __lroundf ( float __x ) ; extern long long int llroundf ( float __x ) ; extern long long int __llroundf ( float __x ) ; # 335 "/usr/include/bits/mathcalls.h" extern float fdimf ( float __x , float __y ) ; extern float __fdimf ( float __x , float __y ) ; # 338 "/usr/include/bits/mathcalls.h" extern float fmaxf ( float __x , float __y ) ; extern float __fmaxf ( float __x , float __y ) ; # 341 "/usr/include/bits/mathcalls.h" extern float fminf ( float __x , float __y ) ; extern float __fminf ( float __x , float __y ) ; # 345 "/usr/include/bits/mathcalls.h" extern int __fpclassifyf ( float __value ) __attribute__ ( ( __const__ ) ) ; # 349 "/usr/include/bits/mathcalls.h" extern int __signbitf ( float __value ) __attribute__ ( ( __const__ ) ) ; # 354 "/usr/include/bits/mathcalls.h" extern float fmaf ( float __x , float __y , float __z ) ; extern float __fmaf ( float __x , float __y , float __z ) ; # 363 "/usr/include/bits/mathcalls.h" extern float scalbf ( float __x , float __n ) ; extern float __scalbf ( float __x , float __n ) ; # 95 "/usr/include/math.h" # 1 "/usr/include/bits/mathcalls.h" # 18 "/usr/include/bits/mathcalls.h" # 44 "/usr/include/bits/mathcalls.h" # 51 "/usr/include/bits/mathcalls.h" # 54 "/usr/include/bits/mathcalls.h" extern long double acosl ( long double __x ) ; extern long double __acosl ( long double __x ) ; extern long double asinl ( long double __x ) ; extern long double __asinl ( long double __x ) ; extern long double atanl ( long double __x ) ; extern long double __atanl ( long double __x ) ; extern long double atan2l ( long double __y , long double __x ) ; extern long double __atan2l ( long double __y , long double __x ) ; # 63 "/usr/include/bits/mathcalls.h" extern long double cosl ( long double __x ) ; extern long double __cosl ( long double __x ) ; extern long double sinl ( long double __x ) ; extern long double __sinl ( long double __x ) ; extern long double tanl ( long double __x ) ; extern long double __tanl ( long double __x ) ; # 70 "/usr/include/bits/mathcalls.h" # 72 "/usr/include/bits/mathcalls.h" extern long double coshl ( long double __x ) ; extern long double __coshl ( long double __x ) ; extern long double sinhl ( long double __x ) ; extern long double __sinhl ( long double __x ) ; extern long double tanhl ( long double __x ) ; extern long double __tanhl ( long double __x ) ; # 88 "/usr/include/bits/mathcalls.h" extern long double acoshl ( long double __x ) ; extern long double __acoshl ( long double __x ) ; extern long double asinhl ( long double __x ) ; extern long double __asinhl ( long double __x ) ; extern long double atanhl ( long double __x ) ; extern long double __atanhl ( long double __x ) ; # 97 "/usr/include/bits/mathcalls.h" # 100 "/usr/include/bits/mathcalls.h" extern long double expl ( long double __x ) ; extern long double __expl ( long double __x ) ; # 103 "/usr/include/bits/mathcalls.h" extern long double frexpl ( long double __x , int * __exponent ) ; extern long double __frexpl ( long double __x , int * __exponent ) ; # 106 "/usr/include/bits/mathcalls.h" extern long double ldexpl ( long double __x , int __exponent ) ; extern long double __ldexpl ( long double __x , int __exponent ) ; # 109 "/usr/include/bits/mathcalls.h" extern long double logl ( long double __x ) ; extern long double __logl ( long double __x ) ; # 112 "/usr/include/bits/mathcalls.h" extern long double log10l ( long double __x ) ; extern long double __log10l ( long double __x ) ; # 115 "/usr/include/bits/mathcalls.h" extern long double modfl ( long double __x , long double * __iptr ) ; extern long double __modfl ( long double __x , long double * __iptr ) ; # 128 "/usr/include/bits/mathcalls.h" extern long double expm1l ( long double __x ) ; extern long double __expm1l ( long double __x ) ; # 131 "/usr/include/bits/mathcalls.h" extern long double log1pl ( long double __x ) ; extern long double __log1pl ( long double __x ) ; # 134 "/usr/include/bits/mathcalls.h" extern long double logbl ( long double __x ) ; extern long double __logbl ( long double __x ) ; # 141 "/usr/include/bits/mathcalls.h" extern long double exp2l ( long double __x ) ; extern long double __exp2l ( long double __x ) ; # 144 "/usr/include/bits/mathcalls.h" extern long double log2l ( long double __x ) ; extern long double __log2l ( long double __x ) ; # 150 "/usr/include/bits/mathcalls.h" # 153 "/usr/include/bits/mathcalls.h" extern long double powl ( long double __x , long double __y ) ; extern long double __powl ( long double __x , long double __y ) ; # 156 "/usr/include/bits/mathcalls.h" extern long double sqrtl ( long double __x ) ; extern long double __sqrtl ( long double __x ) ; # 162 "/usr/include/bits/mathcalls.h" extern long double hypotl ( long double __x , long double __y ) ; extern long double __hypotl ( long double __x , long double __y ) ; # 169 "/usr/include/bits/mathcalls.h" extern long double cbrtl ( long double __x ) ; extern long double __cbrtl ( long double __x ) ; # 175 "/usr/include/bits/mathcalls.h" # 178 "/usr/include/bits/mathcalls.h" extern long double ceill ( long double __x ) __attribute__ ( ( __const__ ) ) ; extern long double __ceill ( long double __x ) __attribute__ ( ( __const__ ) ) ; # 181 "/usr/include/bits/mathcalls.h" extern long double fabsl ( long double __x ) __attribute__ ( ( __const__ ) ) ; extern long double __fabsl ( long double __x ) __attribute__ ( ( __const__ ) ) ; # 184 "/usr/include/bits/mathcalls.h" extern long double floorl ( long double __x ) __attribute__ ( ( __const__ ) ) ; extern long double __floorl ( long double __x ) __attribute__ ( ( __const__ ) ) ; # 187 "/usr/include/bits/mathcalls.h" extern long double fmodl ( long double __x , long double __y ) ; extern long double __fmodl ( long double __x , long double __y ) ; # 192 "/usr/include/bits/mathcalls.h" extern int __isinfl ( long double __value ) __attribute__ ( ( __const__ ) ) ; # 195 "/usr/include/bits/mathcalls.h" extern int __finitel ( long double __value ) __attribute__ ( ( __const__ ) ) ; # 201 "/usr/include/bits/mathcalls.h" extern int isinfl ( long double __value ) __attribute__ ( ( __const__ ) ) ; # 204 "/usr/include/bits/mathcalls.h" extern int finitel ( long double __value ) __attribute__ ( ( __const__ ) ) ; # 207 "/usr/include/bits/mathcalls.h" extern long double dreml ( long double __x , long double __y ) ; extern long double __dreml ( long double __x , long double __y ) ; # 211 "/usr/include/bits/mathcalls.h" extern long double significandl ( long double __x ) ; extern long double __significandl ( long double __x ) ; # 217 "/usr/include/bits/mathcalls.h" extern long double copysignl ( long double __x , long double __y ) __attribute__ ( ( __const__ ) ) ; extern long double __copysignl ( long double __x , long double __y ) __attribute__ ( ( __const__ ) ) ; # 224 "/usr/include/bits/mathcalls.h" extern long double nanl ( const char * __tagb ) __attribute__ ( ( __const__ ) ) ; extern long double __nanl ( const char * __tagb ) __attribute__ ( ( __const__ ) ) ; # 230 "/usr/include/bits/mathcalls.h" extern int __isnanl ( long double __value ) __attribute__ ( ( __const__ ) ) ; # 234 "/usr/include/bits/mathcalls.h" extern int isnanl ( long double __value ) __attribute__ ( ( __const__ ) ) ; # 237 "/usr/include/bits/mathcalls.h" extern long double j0l ( long double ) ; extern long double __j0l ( long double ) ; extern long double j1l ( long double ) ; extern long double __j1l ( long double ) ; extern long double jnl ( int , long double ) ; extern long double __jnl ( int , long double ) ; extern long double y0l ( long double ) ; extern long double __y0l ( long double ) ; extern long double y1l ( long double ) ; extern long double __y1l ( long double ) ; extern long double ynl ( int , long double ) ; extern long double __ynl ( int , long double ) ; # 249 "/usr/include/bits/mathcalls.h" extern long double erfl ( long double ) ; extern long double __erfl ( long double ) ; extern long double erfcl ( long double ) ; extern long double __erfcl ( long double ) ; extern long double lgammal ( long double ) ; extern long double __lgammal ( long double ) ; # 258 "/usr/include/bits/mathcalls.h" extern long double tgammal ( long double ) ; extern long double __tgammal ( long double ) ; # 264 "/usr/include/bits/mathcalls.h" extern long double gammal ( long double ) ; extern long double __gammal ( long double ) ; # 271 "/usr/include/bits/mathcalls.h" extern long double lgammal_r ( long double , int * __signgamp ) ; extern long double __lgammal_r ( long double , int * __signgamp ) ; # 279 "/usr/include/bits/mathcalls.h" extern long double rintl ( long double __x ) ; extern long double __rintl ( long double __x ) ; # 282 "/usr/include/bits/mathcalls.h" extern long double nextafterl ( long double __x , long double __y ) __attribute__ ( ( __const__ ) ) ; extern long double __nextafterl ( long double __x , long double __y ) __attribute__ ( ( __const__ ) ) ; # 285 "/usr/include/bits/mathcalls.h" extern long double nexttowardl ( long double __x , long double __y ) __attribute__ ( ( __const__ ) ) ; extern long double __nexttowardl ( long double __x , long double __y ) __attribute__ ( ( __const__ ) ) ; # 288 "/usr/include/bits/mathcalls.h" extern long double remainderl ( long double __x , long double __y ) ; extern long double __remainderl ( long double __x , long double __y ) ; # 292 "/usr/include/bits/mathcalls.h" extern long double scalbnl ( long double __x , int __n ) ; extern long double __scalbnl ( long double __x , int __n ) ; # 296 "/usr/include/bits/mathcalls.h" extern int ilogbl ( long double __x ) ; extern int __ilogbl ( long double __x ) ; # 301 "/usr/include/bits/mathcalls.h" extern long double scalblnl ( long double __x , long int __n ) ; extern long double __scalblnl ( long double __x , long int __n ) ; # 305 "/usr/include/bits/mathcalls.h" extern long double nearbyintl ( long double __x ) ; extern long double __nearbyintl ( long double __x ) ; # 309 "/usr/include/bits/mathcalls.h" extern long double roundl ( long double __x ) __attribute__ ( ( __const__ ) ) ; extern long double __roundl ( long double __x ) __attribute__ ( ( __const__ ) ) ; # 313 "/usr/include/bits/mathcalls.h" extern long double truncl ( long double __x ) __attribute__ ( ( __const__ ) ) ; extern long double __truncl ( long double __x ) __attribute__ ( ( __const__ ) ) ; # 318 "/usr/include/bits/mathcalls.h" extern long double remquol ( long double __x , long double __y , int * __quo ) ; extern long double __remquol ( long double __x , long double __y , int * __quo ) ; # 322 "/usr/include/bits/mathcalls.h" # 325 "/usr/include/bits/mathcalls.h" extern long int lrintl ( long double __x ) ; extern long int __lrintl ( long double __x ) ; extern long long int llrintl ( long double __x ) ; extern long long int __llrintl ( long double __x ) ; # 330 "/usr/include/bits/mathcalls.h" extern long int lroundl ( long double __x ) ; extern long int __lroundl ( long double __x ) ; extern long long int llroundl ( long double __x ) ; extern long long int __llroundl ( long double __x ) ; # 335 "/usr/include/bits/mathcalls.h" extern long double fdiml ( long double __x , long double __y ) ; extern long double __fdiml ( long double __x , long double __y ) ; # 338 "/usr/include/bits/mathcalls.h" extern long double fmaxl ( long double __x , long double __y ) ; extern long double __fmaxl ( long double __x , long double __y ) ; # 341 "/usr/include/bits/mathcalls.h" extern long double fminl ( long double __x , long double __y ) ; extern long double __fminl ( long double __x , long double __y ) ; # 345 "/usr/include/bits/mathcalls.h" extern int __fpclassifyl ( long double __value ) __attribute__ ( ( __const__ ) ) ; # 349 "/usr/include/bits/mathcalls.h" extern int __signbitl ( long double __value ) __attribute__ ( ( __const__ ) ) ; # 354 "/usr/include/bits/mathcalls.h" extern long double fmal ( long double __x , long double __y , long double __z ) ; extern long double __fmal ( long double __x , long double __y , long double __z ) ; # 363 "/usr/include/bits/mathcalls.h" extern long double scalbl ( long double __x , long double __n ) ; extern long double __scalbl ( long double __x , long double __n ) ; # 142 "/usr/include/math.h" # 156 "/usr/include/math.h" extern int signgam ; # 161 "/usr/include/math.h" # 195 "/usr/include/math.h" # 197 "/usr/include/math.h" enum { FP_NAN , # 202 "/usr/include/math.h" FP_INFINITE , # 204 "/usr/include/math.h" FP_ZERO , # 206 "/usr/include/math.h" FP_SUBNORMAL , # 208 "/usr/include/math.h" FP_NORMAL # 210 "/usr/include/math.h" } ; # 212 "/usr/include/math.h" # 224 "/usr/include/math.h" # 236 "/usr/include/math.h" # 248 "/usr/include/math.h" # 252 "/usr/include/math.h" # 264 "/usr/include/math.h" # 276 "/usr/include/math.h" # 282 "/usr/include/math.h" # 290 "/usr/include/math.h" typedef enum { _IEEE_ = - 1 , _SVID_ , _XOPEN_ , _POSIX_ , _ISOC_ } _LIB_VERSION_TYPE ; # 302 "/usr/include/math.h" extern _LIB_VERSION_TYPE _LIB_VERSION ; # 312 "/usr/include/math.h" # 316 "/usr/include/math.h" struct exception # 318 "/usr/include/math.h" { int type ; char * name ; double arg1 ; double arg2 ; double retval ; } ; # 329 "/usr/include/math.h" extern int matherr ( struct exception * __exc ) ; # 334 "/usr/include/math.h" # 342 "/usr/include/math.h" # 355 "/usr/include/math.h" # 374 "/usr/include/math.h" # 394 "/usr/include/math.h" # 414 "/usr/include/math.h" # 420 "/usr/include/math.h" # 422 "/usr/include/math.h" # 430 "/usr/include/math.h" # 438 "/usr/include/math.h" # 446 "/usr/include/math.h" # 454 "/usr/include/math.h" # 462 "/usr/include/math.h" # 56 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" # 246 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" # 290 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" # 292 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" int __builtin_abs ( int ) ; # 297 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_atan2 ( double , double ) ; # 300 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_atan ( double ) ; # 303 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_tan ( double ) ; # 306 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_cos ( double ) ; # 309 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_sin ( double ) ; # 312 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_fabs ( double ) ; # 315 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_sqrt ( double ) ; # 318 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_log ( double ) ; # 321 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_log10 ( double ) ; # 324 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_exp ( double ) ; # 327 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_pow ( double , double ) ; # 331 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_fmin ( double , double ) ; # 334 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_fminf ( float , float ) ; # 337 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" double __builtin_fmax ( double , double ) ; # 340 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_fmaxf ( float , float ) ; # 343 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_acosf ( float ) ; # 346 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_asinf ( float ) ; # 349 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_atan2f ( float , float ) ; # 352 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_atanf ( float ) ; # 355 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_tanf ( float ) ; # 358 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_cosf ( float ) ; # 361 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_sinf ( float ) ; # 364 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_fabsf ( float ) ; # 367 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_sqrtf ( float ) ; # 370 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_logf ( float ) ; # 373 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_log10f ( float ) ; # 376 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_expf ( float ) ; # 379 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" float __builtin_powf ( float , float ) ; # 387 "/opt/pgi/14.2.0/linux86-64/14.2/include/math.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_MATH_H" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.headers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -mp -fast /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/socket.h" # 19 "/usr/include/sys/socket.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 25 "/usr/include/sys/socket.h" # 1 "/usr/include/sys/uio.h" # 17 "/usr/include/sys/uio.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/sys/uio.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 25 "/usr/include/sys/uio.h" # 28 "/usr/include/sys/uio.h" # 1 "/usr/include/bits/uio.h" # 17 "/usr/include/bits/uio.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 27 "/usr/include/bits/uio.h" # 31 "/usr/include/bits/uio.h" # 39 "/usr/include/bits/uio.h" # 43 "/usr/include/bits/uio.h" struct iovec { void * iov_base ; size_t iov_len ; } ; # 30 "/usr/include/sys/uio.h" # 39 "/usr/include/sys/uio.h" extern ssize_t readv ( int __fd , const struct iovec * __iovec , int __count ) ; # 50 "/usr/include/sys/uio.h" extern ssize_t writev ( int __fd , const struct iovec * __iovec , int __count ) ; # 65 "/usr/include/sys/uio.h" extern ssize_t preadv ( int __fd , const struct iovec * __iovec , int __count , __off_t __offset ) ; # 77 "/usr/include/sys/uio.h" extern ssize_t pwritev ( int __fd , const struct iovec * __iovec , int __count , __off_t __offset ) ; # 29 "/usr/include/sys/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 31 "/usr/include/sys/socket.h" # 39 "/usr/include/sys/socket.h" # 1 "/usr/include/bits/socket.h" # 19 "/usr/include/bits/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 30 "/usr/include/bits/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 32 "/usr/include/bits/socket.h" # 33 "/usr/include/bits/socket.h" # 35 "/usr/include/bits/socket.h" typedef __socklen_t socklen_t ; # 39 "/usr/include/bits/socket.h" enum __socket_type { SOCK_STREAM = 1 , # 45 "/usr/include/bits/socket.h" SOCK_DGRAM = 2 , # 48 "/usr/include/bits/socket.h" SOCK_RAW = 3 , # 50 "/usr/include/bits/socket.h" SOCK_RDM = 4 , # 52 "/usr/include/bits/socket.h" SOCK_SEQPACKET = 5 , # 55 "/usr/include/bits/socket.h" SOCK_DCCP = 6 , # 57 "/usr/include/bits/socket.h" SOCK_PACKET = 10 , # 59 "/usr/include/bits/socket.h" # 62 "/usr/include/bits/socket.h" # 65 "/usr/include/bits/socket.h" SOCK_CLOEXEC = 02000000 , # 68 "/usr/include/bits/socket.h" SOCK_NONBLOCK = 04000 # 71 "/usr/include/bits/socket.h" } ; # 73 "/usr/include/bits/socket.h" # 116 "/usr/include/bits/socket.h" # 162 "/usr/include/bits/socket.h" # 171 "/usr/include/bits/socket.h" # 174 "/usr/include/bits/socket.h" # 1 "/usr/include/bits/sockaddr.h" # 18 "/usr/include/bits/sockaddr.h" # 22 "/usr/include/bits/sockaddr.h" # 28 "/usr/include/bits/sockaddr.h" typedef unsigned short int sa_family_t ; # 33 "/usr/include/bits/sockaddr.h" # 176 "/usr/include/bits/socket.h" # 177 "/usr/include/bits/socket.h" struct sockaddr { sa_family_t sa_family ; char sa_data [ 14 ] ; } ; # 186 "/usr/include/bits/socket.h" # 191 "/usr/include/bits/socket.h" struct sockaddr_storage { sa_family_t ss_family ; unsigned long int __ss_align ; char __ss_padding [ ( 128 - ( 2 * sizeof ( unsigned long int ) ) ) ] ; } ; # 199 "/usr/include/bits/socket.h" enum { MSG_OOB = 0x01 , # 204 "/usr/include/bits/socket.h" MSG_PEEK = 0x02 , # 206 "/usr/include/bits/socket.h" MSG_DONTROUTE = 0x04 , # 213 "/usr/include/bits/socket.h" MSG_CTRUNC = 0x08 , # 215 "/usr/include/bits/socket.h" MSG_PROXY = 0x10 , # 217 "/usr/include/bits/socket.h" MSG_TRUNC = 0x20 , # 219 "/usr/include/bits/socket.h" MSG_DONTWAIT = 0x40 , # 221 "/usr/include/bits/socket.h" MSG_EOR = 0x80 , # 223 "/usr/include/bits/socket.h" MSG_WAITALL = 0x100 , # 225 "/usr/include/bits/socket.h" MSG_FIN = 0x200 , # 227 "/usr/include/bits/socket.h" MSG_SYN = 0x400 , # 229 "/usr/include/bits/socket.h" MSG_CONFIRM = 0x800 , # 231 "/usr/include/bits/socket.h" MSG_RST = 0x1000 , # 233 "/usr/include/bits/socket.h" MSG_ERRQUEUE = 0x2000 , # 235 "/usr/include/bits/socket.h" MSG_NOSIGNAL = 0x4000 , # 237 "/usr/include/bits/socket.h" MSG_MORE = 0x8000 , # 240 "/usr/include/bits/socket.h" MSG_CMSG_CLOEXEC = 0x40000000 # 242 "/usr/include/bits/socket.h" # 244 "/usr/include/bits/socket.h" } ; # 248 "/usr/include/bits/socket.h" struct msghdr { void * msg_name ; socklen_t msg_namelen ; # 254 "/usr/include/bits/socket.h" struct iovec * msg_iov ; size_t msg_iovlen ; # 257 "/usr/include/bits/socket.h" void * msg_control ; size_t msg_controllen ; # 261 "/usr/include/bits/socket.h" # 263 "/usr/include/bits/socket.h" int msg_flags ; } ; # 266 "/usr/include/bits/socket.h" struct cmsghdr { size_t cmsg_len ; # 273 "/usr/include/bits/socket.h" int cmsg_level ; int cmsg_type ; # 277 "/usr/include/bits/socket.h" unsigned char __cmsg_data [ ] ; # 279 "/usr/include/bits/socket.h" } ; # 281 "/usr/include/bits/socket.h" # 297 "/usr/include/bits/socket.h" extern struct cmsghdr * __cmsg_nxthdr ( struct msghdr * __mhdr , struct cmsghdr * __cmsg ) ; # 323 "/usr/include/bits/socket.h" enum { SCM_RIGHTS = 0x01 # 332 "/usr/include/bits/socket.h" } ; # 344 "/usr/include/bits/socket.h" # 369 "/usr/include/bits/socket.h" # 1 "/usr/include/asm/socket.h" # 1 "/usr/include/asm-generic/socket.h" # 1 "/usr/include/asm/sockios.h" # 1 "/usr/include/asm-generic/sockios.h" # 4 "/usr/include/asm-generic/sockios.h" # 2 "/usr/include/asm/sockios.h" # 5 "/usr/include/asm-generic/socket.h" # 6 "/usr/include/asm-generic/socket.h" # 24 "/usr/include/asm-generic/socket.h" # 35 "/usr/include/asm-generic/socket.h" # 42 "/usr/include/asm-generic/socket.h" # 2 "/usr/include/asm/socket.h" # 371 "/usr/include/bits/socket.h" # 403 "/usr/include/bits/socket.h" struct linger { int l_onoff ; int l_linger ; } ; # 41 "/usr/include/sys/socket.h" # 44 "/usr/include/sys/socket.h" struct osockaddr { unsigned short int sa_family ; unsigned char sa_data [ 14 ] ; } ; # 53 "/usr/include/sys/socket.h" enum { SHUT_RD = 0 , # 58 "/usr/include/sys/socket.h" SHUT_WR , # 60 "/usr/include/sys/socket.h" SHUT_RDWR # 62 "/usr/include/sys/socket.h" } ; # 69 "/usr/include/sys/socket.h" # 104 "/usr/include/sys/socket.h" extern int socket ( int __domain , int __type , int __protocol ) ; # 110 "/usr/include/sys/socket.h" extern int socketpair ( int __domain , int __type , int __protocol , int __fds [ 2 ] ) ; # 114 "/usr/include/sys/socket.h" extern int bind ( int __fd , const struct sockaddr * __addr , socklen_t __len ) ; # 118 "/usr/include/sys/socket.h" extern int getsockname ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __len ) ; # 128 "/usr/include/sys/socket.h" extern int connect ( int __fd , const struct sockaddr * __addr , socklen_t __len ) ; # 132 "/usr/include/sys/socket.h" extern int getpeername ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __len ) ; # 140 "/usr/include/sys/socket.h" extern ssize_t send ( int __fd , const void * __buf , size_t __n , int __flags ) ; # 147 "/usr/include/sys/socket.h" extern ssize_t recv ( int __fd , void * __buf , size_t __n , int __flags ) ; # 154 "/usr/include/sys/socket.h" extern ssize_t sendto ( int __fd , const void * __buf , size_t __n , int __flags , const struct sockaddr * __addr , socklen_t __addr_len ) ; # 165 "/usr/include/sys/socket.h" extern ssize_t recvfrom ( int __fd , void * __restrict __buf , size_t __n , int __flags , struct sockaddr * __restrict __addr , socklen_t * __restrict __addr_len ) ; # 175 "/usr/include/sys/socket.h" extern ssize_t sendmsg ( int __fd , const struct msghdr * __message , int __flags ) ; # 183 "/usr/include/sys/socket.h" extern ssize_t recvmsg ( int __fd , struct msghdr * __message , int __flags ) ; # 189 "/usr/include/sys/socket.h" extern int getsockopt ( int __fd , int __level , int __optname , void * __restrict __optval , socklen_t * __restrict __optlen ) ; # 196 "/usr/include/sys/socket.h" extern int setsockopt ( int __fd , int __level , int __optname , const void * __optval , socklen_t __optlen ) ; # 203 "/usr/include/sys/socket.h" extern int listen ( int __fd , int __n ) ; # 213 "/usr/include/sys/socket.h" extern int accept ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __addr_len ) ; # 231 "/usr/include/sys/socket.h" extern int shutdown ( int __fd , int __how ) ; # 236 "/usr/include/sys/socket.h" extern int sockatmark ( int __fd ) ; # 244 "/usr/include/sys/socket.h" extern int isfdtype ( int __fd , int __fdtype ) ; # 249 "/usr/include/sys/socket.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/malloc.h" # 19 "/usr/include/malloc.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 25 "/usr/include/malloc.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 45 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 47 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 152 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef long int ptrdiff_t ; # 162 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 290 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 310 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 326 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef int wchar_t ; # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 413 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 26 "/usr/include/malloc.h" # 1 "/usr/include/stdio.h" # 18 "/usr/include/stdio.h" # 22 "/usr/include/stdio.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 29 "/usr/include/stdio.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 162 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 413 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 35 "/usr/include/stdio.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 37 "/usr/include/stdio.h" # 44 "/usr/include/stdio.h" struct _IO_FILE ; # 48 "/usr/include/stdio.h" typedef struct _IO_FILE FILE ; # 64 "/usr/include/stdio.h" typedef struct _IO_FILE __FILE ; # 1 "/usr/include/libio.h" # 27 "/usr/include/libio.h" # 1 "/usr/include/_G_config.h" # 2 "/usr/include/_G_config.h" # 7 "/usr/include/_G_config.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 10 "/usr/include/_G_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 162 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 413 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 16 "/usr/include/_G_config.h" # 1 "/usr/include/wchar.h" # 17 "/usr/include/wchar.h" # 22 "/usr/include/wchar.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 162 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 355 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned int wint_t ; # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 413 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 53 "/usr/include/wchar.h" # 54 "/usr/include/wchar.h" # 60 "/usr/include/wchar.h" # 70 "/usr/include/wchar.h" # 82 "/usr/include/wchar.h" typedef struct { int __count ; union { # 89 "/usr/include/wchar.h" unsigned int __wch ; # 93 "/usr/include/wchar.h" char __wchb [ 4 ] ; } __value ; } __mbstate_t ; # 101 "/usr/include/wchar.h" # 897 "/usr/include/wchar.h" # 21 "/usr/include/_G_config.h" # 22 "/usr/include/_G_config.h" typedef struct { __off_t __pos ; __mbstate_t __state ; } _G_fpos_t ; typedef struct { __off64_t __pos ; __mbstate_t __state ; } _G_fpos64_t ; # 53 "/usr/include/_G_config.h" typedef int _G_int16_t __attribute__ ( ( __mode__ ( __HI__ ) ) ) ; typedef int _G_int32_t __attribute__ ( ( __mode__ ( __SI__ ) ) ) ; typedef unsigned int _G_uint16_t __attribute__ ( ( __mode__ ( __HI__ ) ) ) ; typedef unsigned int _G_uint32_t __attribute__ ( ( __mode__ ( __SI__ ) ) ) ; # 61 "/usr/include/_G_config.h" # 82 "/usr/include/_G_config.h" # 87 "/usr/include/_G_config.h" # 33 "/usr/include/libio.h" # 33 "/usr/include/libio.h" # 51 "/usr/include/libio.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/stdarg.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include/stdarg.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include/stdarg.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/va_list.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include/va_list.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include/va_list.h" # 25 "/opt/pgi/14.2.0/linux86-64/14.2/include/va_list.h" typedef struct __pgi_tag { unsigned int gp_offset ; unsigned int fp_offset ; char * overflow_arg_area ; char * reg_save_area ; } __pgi_va_list [ 1 ] ; # 34 "/opt/pgi/14.2.0/linux86-64/14.2/include/va_list.h" typedef __pgi_va_list va_list ; # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/va_list.h" typedef __pgi_va_list __gnuc_va_list ; # 24 "/opt/pgi/14.2.0/linux86-64/14.2/include/stdarg.h" # 30 "/opt/pgi/14.2.0/linux86-64/14.2/include/stdarg.h" extern void * __builtin_va_arg ( ) ; # 54 "/usr/include/libio.h" # 74 "/usr/include/libio.h" # 118 "/usr/include/libio.h" # 150 "/usr/include/libio.h" # 170 "/usr/include/libio.h" struct _IO_jump_t ; struct _IO_FILE ; # 172 "/usr/include/libio.h" # 180 "/usr/include/libio.h" typedef void _IO_lock_t ; # 184 "/usr/include/libio.h" # 186 "/usr/include/libio.h" struct _IO_marker { struct _IO_marker * _next ; struct _IO_FILE * _sbuf ; int _pos ; # 203 "/usr/include/libio.h" } ; # 205 "/usr/include/libio.h" enum __codecvt_result { __codecvt_ok , __codecvt_partial , __codecvt_error , __codecvt_noconv } ; # 271 "/usr/include/libio.h" struct _IO_FILE { int _flags ; # 275 "/usr/include/libio.h" char * _IO_read_ptr ; char * _IO_read_end ; char * _IO_read_base ; char * _IO_write_base ; char * _IO_write_ptr ; char * _IO_write_end ; char * _IO_buf_base ; char * _IO_buf_end ; char * _IO_save_base ; char * _IO_backup_base ; char * _IO_save_end ; # 290 "/usr/include/libio.h" struct _IO_marker * _markers ; # 292 "/usr/include/libio.h" struct _IO_FILE * _chain ; # 294 "/usr/include/libio.h" int _fileno ; # 298 "/usr/include/libio.h" int _flags2 ; # 300 "/usr/include/libio.h" __off_t _old_offset ; # 303 "/usr/include/libio.h" unsigned short _cur_column ; signed char _vtable_offset ; char _shortbuf [ 1 ] ; # 308 "/usr/include/libio.h" # 310 "/usr/include/libio.h" _IO_lock_t * _lock ; # 319 "/usr/include/libio.h" __off64_t _offset ; # 328 "/usr/include/libio.h" void * __pad1 ; void * __pad2 ; void * __pad3 ; void * __pad4 ; size_t __pad5 ; # 334 "/usr/include/libio.h" int _mode ; char _unused2 [ 15 * sizeof ( int ) - 4 * sizeof ( void * ) - sizeof ( size_t ) ] ; # 338 "/usr/include/libio.h" } ; # 341 "/usr/include/libio.h" typedef struct _IO_FILE _IO_FILE ; # 344 "/usr/include/libio.h" struct _IO_FILE_plus ; # 346 "/usr/include/libio.h" extern struct _IO_FILE_plus _IO_2_1_stdin_ ; extern struct _IO_FILE_plus _IO_2_1_stdout_ ; extern struct _IO_FILE_plus _IO_2_1_stderr_ ; # 360 "/usr/include/libio.h" # 363 "/usr/include/libio.h" typedef __ssize_t __io_read_fn ( void * __cookie , char * __buf , size_t __nbytes ) ; # 371 "/usr/include/libio.h" typedef __ssize_t __io_write_fn ( void * __cookie , const char * __buf , size_t __n ) ; # 380 "/usr/include/libio.h" typedef int __io_seek_fn ( void * __cookie , __off64_t * __pos , int __w ) ; # 383 "/usr/include/libio.h" typedef int __io_close_fn ( void * __cookie ) ; # 416 "/usr/include/libio.h" extern int __underflow ( _IO_FILE * ) ; extern int __uflow ( _IO_FILE * ) ; extern int __overflow ( _IO_FILE * , int ) ; # 460 "/usr/include/libio.h" extern int _IO_getc ( _IO_FILE * __fp ) ; extern int _IO_putc ( int __c , _IO_FILE * __fp ) ; extern int _IO_feof ( _IO_FILE * __fp ) ; extern int _IO_ferror ( _IO_FILE * __fp ) ; # 465 "/usr/include/libio.h" extern int _IO_peekc_locked ( _IO_FILE * __fp ) ; # 467 "/usr/include/libio.h" # 471 "/usr/include/libio.h" extern void _IO_flockfile ( _IO_FILE * ) ; extern void _IO_funlockfile ( _IO_FILE * ) ; extern int _IO_ftrylockfile ( _IO_FILE * ) ; # 490 "/usr/include/libio.h" extern int _IO_vfscanf ( _IO_FILE * __restrict , const char * __restrict , __gnuc_va_list , int * __restrict ) ; extern int _IO_vfprintf ( _IO_FILE * __restrict , const char * __restrict , __gnuc_va_list ) ; extern __ssize_t _IO_padn ( _IO_FILE * , int , __ssize_t ) ; extern size_t _IO_sgetn ( _IO_FILE * , void * , size_t ) ; # 497 "/usr/include/libio.h" extern __off64_t _IO_seekoff ( _IO_FILE * , __off64_t , int , int ) ; extern __off64_t _IO_seekpos ( _IO_FILE * , __off64_t , int ) ; # 500 "/usr/include/libio.h" extern void _IO_free_backup_area ( _IO_FILE * ) ; # 76 "/usr/include/stdio.h" # 88 "/usr/include/stdio.h" # 91 "/usr/include/stdio.h" typedef _G_fpos_t fpos_t ; # 100 "/usr/include/stdio.h" # 106 "/usr/include/stdio.h" # 113 "/usr/include/stdio.h" # 120 "/usr/include/stdio.h" # 127 "/usr/include/stdio.h" # 140 "/usr/include/stdio.h" # 1 "/usr/include/bits/stdio_lim.h" # 17 "/usr/include/bits/stdio_lim.h" # 142 "/usr/include/stdio.h" # 144 "/usr/include/stdio.h" extern struct _IO_FILE * stdin ; extern struct _IO_FILE * stdout ; extern struct _IO_FILE * stderr ; # 149 "/usr/include/stdio.h" # 156 "/usr/include/stdio.h" extern int remove ( const char * __filename ) ; extern int rename ( const char * __old , const char * __new ) ; # 163 "/usr/include/stdio.h" extern int renameat ( int __oldfd , const char * __old , int __newfd , const char * __new ) ; # 172 "/usr/include/stdio.h" # 174 "/usr/include/stdio.h" extern FILE * tmpfile ( void ) ; # 187 "/usr/include/stdio.h" extern char * tmpnam ( char * __s ) ; # 193 "/usr/include/stdio.h" extern char * tmpnam_r ( char * __s ) ; # 205 "/usr/include/stdio.h" extern char * tempnam ( const char * __dir , const char * __pfx ) ; # 215 "/usr/include/stdio.h" extern int fclose ( FILE * __stream ) ; # 220 "/usr/include/stdio.h" extern int fflush ( FILE * __stream ) ; # 230 "/usr/include/stdio.h" extern int fflush_unlocked ( FILE * __stream ) ; # 250 "/usr/include/stdio.h" extern FILE * fopen ( const char * __restrict __filename , const char * __restrict __modes ) ; # 256 "/usr/include/stdio.h" extern FILE * freopen ( const char * __restrict __filename , const char * __restrict __modes , FILE * __restrict __stream ) ; # 284 "/usr/include/stdio.h" extern FILE * fdopen ( int __fd , const char * __modes ) ; # 297 "/usr/include/stdio.h" extern FILE * fmemopen ( void * __s , size_t __len , const char * __modes ) ; # 303 "/usr/include/stdio.h" extern FILE * open_memstream ( char * * __bufloc , size_t * __sizeloc ) ; # 310 "/usr/include/stdio.h" extern void setbuf ( FILE * __restrict __stream , char * __restrict __buf ) ; # 314 "/usr/include/stdio.h" extern int setvbuf ( FILE * __restrict __stream , char * __restrict __buf , int __modes , size_t __n ) ; # 321 "/usr/include/stdio.h" extern void setbuffer ( FILE * __restrict __stream , char * __restrict __buf , size_t __size ) ; # 325 "/usr/include/stdio.h" extern void setlinebuf ( FILE * __stream ) ; # 334 "/usr/include/stdio.h" extern int fprintf ( FILE * __restrict __stream , const char * __restrict __format , ... ) ; # 340 "/usr/include/stdio.h" extern int printf ( const char * __restrict __format , ... ) ; extern int sprintf ( char * __restrict __s , const char * __restrict __format , ... ) ; # 349 "/usr/include/stdio.h" extern int vfprintf ( FILE * __restrict __s , const char * __restrict __format , __gnuc_va_list __arg ) ; # 355 "/usr/include/stdio.h" extern int vprintf ( const char * __restrict __format , __gnuc_va_list __arg ) ; extern int vsprintf ( char * __restrict __s , const char * __restrict __format , __gnuc_va_list __arg ) ; # 364 "/usr/include/stdio.h" extern int snprintf ( char * __restrict __s , size_t __maxlen , const char * __restrict __format , ... ) __attribute__ ( ( __format__ ( __printf__ , 3 , 4 ) ) ) ; # 369 "/usr/include/stdio.h" extern int vsnprintf ( char * __restrict __s , size_t __maxlen , const char * __restrict __format , __gnuc_va_list __arg ) __attribute__ ( ( __format__ ( __printf__ , 3 , 0 ) ) ) ; # 395 "/usr/include/stdio.h" extern int vdprintf ( int __fd , const char * __restrict __fmt , __gnuc_va_list __arg ) __attribute__ ( ( __format__ ( __printf__ , 2 , 0 ) ) ) ; extern int dprintf ( int __fd , const char * __restrict __fmt , ... ) __attribute__ ( ( __format__ ( __printf__ , 2 , 3 ) ) ) ; # 408 "/usr/include/stdio.h" extern int fscanf ( FILE * __restrict __stream , const char * __restrict __format , ... ) ; # 414 "/usr/include/stdio.h" extern int scanf ( const char * __restrict __format , ... ) ; extern int sscanf ( const char * __restrict __s , const char * __restrict __format , ... ) ; # 436 "/usr/include/stdio.h" extern int __isoc99_fscanf ( FILE * __restrict __stream , const char * __restrict __format , ... ) ; extern int __isoc99_scanf ( const char * __restrict __format , ... ) ; extern int __isoc99_sscanf ( const char * __restrict __s , const char * __restrict __format , ... ) ; # 454 "/usr/include/stdio.h" extern int vfscanf ( FILE * __restrict __s , const char * __restrict __format , __gnuc_va_list __arg ) __attribute__ ( ( __format__ ( __scanf__ , 2 , 0 ) ) ) ; # 462 "/usr/include/stdio.h" extern int vscanf ( const char * __restrict __format , __gnuc_va_list __arg ) __attribute__ ( ( __format__ ( __scanf__ , 1 , 0 ) ) ) ; # 466 "/usr/include/stdio.h" extern int vsscanf ( const char * __restrict __s , const char * __restrict __format , __gnuc_va_list __arg ) __attribute__ ( ( __format__ ( __scanf__ , 2 , 0 ) ) ) ; # 492 "/usr/include/stdio.h" extern int __isoc99_vfscanf ( FILE * __restrict __s , const char * __restrict __format , __gnuc_va_list __arg ) ; extern int __isoc99_vscanf ( const char * __restrict __format , __gnuc_va_list __arg ) ; extern int __isoc99_vsscanf ( const char * __restrict __s , const char * __restrict __format , __gnuc_va_list __arg ) ; # 514 "/usr/include/stdio.h" extern int fgetc ( FILE * __stream ) ; extern int getc ( FILE * __stream ) ; # 521 "/usr/include/stdio.h" extern int getchar ( void ) ; # 526 "/usr/include/stdio.h" # 533 "/usr/include/stdio.h" extern int getc_unlocked ( FILE * __stream ) ; extern int getchar_unlocked ( void ) ; # 544 "/usr/include/stdio.h" extern int fgetc_unlocked ( FILE * __stream ) ; # 556 "/usr/include/stdio.h" extern int fputc ( int __c , FILE * __stream ) ; extern int putc ( int __c , FILE * __stream ) ; # 563 "/usr/include/stdio.h" extern int putchar ( int __c ) ; # 568 "/usr/include/stdio.h" # 577 "/usr/include/stdio.h" extern int fputc_unlocked ( int __c , FILE * __stream ) ; # 585 "/usr/include/stdio.h" extern int putc_unlocked ( int __c , FILE * __stream ) ; extern int putchar_unlocked ( int __c ) ; # 593 "/usr/include/stdio.h" extern int getw ( FILE * __stream ) ; # 596 "/usr/include/stdio.h" extern int putw ( int __w , FILE * __stream ) ; # 605 "/usr/include/stdio.h" extern char * fgets ( char * __restrict __s , int __n , FILE * __restrict __stream ) ; # 613 "/usr/include/stdio.h" extern char * gets ( char * __s ) ; # 639 "/usr/include/stdio.h" extern __ssize_t __getdelim ( char * * __restrict __lineptr , size_t * __restrict __n , int __delimiter , FILE * __restrict __stream ) ; extern __ssize_t getdelim ( char * * __restrict __lineptr , size_t * __restrict __n , int __delimiter , FILE * __restrict __stream ) ; # 652 "/usr/include/stdio.h" extern __ssize_t getline ( char * * __restrict __lineptr , size_t * __restrict __n , FILE * __restrict __stream ) ; # 663 "/usr/include/stdio.h" extern int fputs ( const char * __restrict __s , FILE * __restrict __stream ) ; # 669 "/usr/include/stdio.h" extern int puts ( const char * __s ) ; # 676 "/usr/include/stdio.h" extern int ungetc ( int __c , FILE * __stream ) ; # 683 "/usr/include/stdio.h" extern size_t fread ( void * __restrict __ptr , size_t __size , size_t __n , FILE * __restrict __stream ) ; # 689 "/usr/include/stdio.h" extern size_t fwrite ( const void * __restrict __ptr , size_t __size , size_t __n , FILE * __restrict __s ) ; # 711 "/usr/include/stdio.h" extern size_t fread_unlocked ( void * __restrict __ptr , size_t __size , size_t __n , FILE * __restrict __stream ) ; extern size_t fwrite_unlocked ( const void * __restrict __ptr , size_t __size , size_t __n , FILE * __restrict __stream ) ; # 723 "/usr/include/stdio.h" extern int fseek ( FILE * __stream , long int __off , int __whence ) ; # 728 "/usr/include/stdio.h" extern long int ftell ( FILE * __stream ) ; # 733 "/usr/include/stdio.h" extern void rewind ( FILE * __stream ) ; # 740 "/usr/include/stdio.h" # 747 "/usr/include/stdio.h" extern int fseeko ( FILE * __stream , __off_t __off , int __whence ) ; # 752 "/usr/include/stdio.h" extern __off_t ftello ( FILE * __stream ) ; # 772 "/usr/include/stdio.h" extern int fgetpos ( FILE * __restrict __stream , fpos_t * __restrict __pos ) ; # 777 "/usr/include/stdio.h" extern int fsetpos ( FILE * __stream , const fpos_t * __pos ) ; # 800 "/usr/include/stdio.h" extern void clearerr ( FILE * __stream ) ; extern int feof ( FILE * __stream ) ; extern int ferror ( FILE * __stream ) ; # 809 "/usr/include/stdio.h" extern void clearerr_unlocked ( FILE * __stream ) ; extern int feof_unlocked ( FILE * __stream ) ; extern int ferror_unlocked ( FILE * __stream ) ; # 820 "/usr/include/stdio.h" extern void perror ( const char * __s ) ; # 827 "/usr/include/stdio.h" # 1 "/usr/include/bits/sys_errlist.h" # 18 "/usr/include/bits/sys_errlist.h" # 24 "/usr/include/bits/sys_errlist.h" # 27 "/usr/include/bits/sys_errlist.h" extern int sys_nerr ; extern const char * const sys_errlist [ ] ; # 829 "/usr/include/stdio.h" # 832 "/usr/include/stdio.h" extern int fileno ( FILE * __stream ) ; # 837 "/usr/include/stdio.h" extern int fileno_unlocked ( FILE * __stream ) ; # 847 "/usr/include/stdio.h" extern FILE * popen ( const char * __command , const char * __modes ) ; # 853 "/usr/include/stdio.h" extern int pclose ( FILE * __stream ) ; # 859 "/usr/include/stdio.h" extern char * ctermid ( char * __s ) ; # 885 "/usr/include/stdio.h" # 887 "/usr/include/stdio.h" extern void flockfile ( FILE * __stream ) ; # 891 "/usr/include/stdio.h" extern int ftrylockfile ( FILE * __stream ) ; # 894 "/usr/include/stdio.h" extern void funlockfile ( FILE * __stream ) ; # 907 "/usr/include/stdio.h" # 27 "/usr/include/malloc.h" # 29 "/usr/include/malloc.h" # 50 "/usr/include/malloc.h" extern void * malloc ( size_t __size ) ; # 53 "/usr/include/malloc.h" extern void * calloc ( size_t __nmemb , size_t __size ) ; # 58 "/usr/include/malloc.h" # 61 "/usr/include/malloc.h" extern void * realloc ( void * __ptr , size_t __size ) ; # 65 "/usr/include/malloc.h" extern void free ( void * __ptr ) ; # 68 "/usr/include/malloc.h" extern void cfree ( void * __ptr ) ; # 71 "/usr/include/malloc.h" extern void * memalign ( size_t __alignment , size_t __size ) ; # 75 "/usr/include/malloc.h" extern void * valloc ( size_t __size ) ; # 80 "/usr/include/malloc.h" extern void * pvalloc ( size_t __size ) ; # 85 "/usr/include/malloc.h" extern void * ( * __morecore ) ( ptrdiff_t __size ) ; # 88 "/usr/include/malloc.h" extern void * __default_morecore ( ptrdiff_t __size ) ; # 92 "/usr/include/malloc.h" # 94 "/usr/include/malloc.h" struct mallinfo { int arena ; int ordblks ; int smblks ; int hblks ; int hblkhd ; int usmblks ; int fsmblks ; int uordblks ; int fordblks ; int keepcost ; } ; # 107 "/usr/include/malloc.h" extern struct mallinfo mallinfo ( void ) ; # 110 "/usr/include/malloc.h" # 124 "/usr/include/malloc.h" # 134 "/usr/include/malloc.h" extern int mallopt ( int __param , int __val ) ; # 138 "/usr/include/malloc.h" extern int malloc_trim ( size_t __pad ) ; # 142 "/usr/include/malloc.h" extern size_t malloc_usable_size ( void * __ptr ) ; # 145 "/usr/include/malloc.h" extern void malloc_stats ( void ) ; # 148 "/usr/include/malloc.h" extern int malloc_info ( int __options , FILE * __fp ) ; # 151 "/usr/include/malloc.h" extern void * malloc_get_state ( void ) ; # 155 "/usr/include/malloc.h" extern int malloc_set_state ( void * __ptr ) ; # 160 "/usr/include/malloc.h" extern void ( * __malloc_initialize_hook ) ( void ) ; extern void ( * __free_hook ) ( void * __ptr , const void * ) ; # 165 "/usr/include/malloc.h" extern void * ( * __malloc_hook ) ( size_t __size , const void * ) ; # 167 "/usr/include/malloc.h" extern void * ( * __realloc_hook ) ( void * __ptr , size_t __size , const void * ) ; # 169 "/usr/include/malloc.h" extern void * ( * __memalign_hook ) ( size_t __alignment , size_t __size , const void * ) ; # 172 "/usr/include/malloc.h" extern void ( * __after_morecore_hook ) ( void ) ; # 174 "/usr/include/malloc.h" extern void __malloc_check_init ( void ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 29 "/usr/include/time.h" # 35 "/usr/include/time.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 39 "/usr/include/time.h" # 41 "/usr/include/time.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 30 "/usr/include/bits/time.h" # 33 "/usr/include/bits/time.h" # 45 "/usr/include/bits/time.h" # 47 "/usr/include/bits/time.h" # 49 "/usr/include/bits/time.h" # 51 "/usr/include/bits/time.h" # 54 "/usr/include/bits/time.h" # 43 "/usr/include/time.h" # 44 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 57 "/usr/include/time.h" # 59 "/usr/include/time.h" typedef __clock_t clock_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 132 "/usr/include/time.h" struct tm { int tm_sec ; int tm_min ; int tm_hour ; int tm_mday ; int tm_mon ; int tm_year ; int tm_wday ; int tm_yday ; int tm_isdst ; # 146 "/usr/include/time.h" long int tm_gmtoff ; const char * tm_zone ; # 152 "/usr/include/time.h" } ; # 160 "/usr/include/time.h" struct itimerspec { struct timespec it_interval ; struct timespec it_value ; } ; # 167 "/usr/include/time.h" struct sigevent ; # 174 "/usr/include/time.h" typedef __pid_t pid_t ; # 182 "/usr/include/time.h" extern clock_t clock ( void ) ; # 185 "/usr/include/time.h" extern time_t time ( time_t * __timer ) ; # 188 "/usr/include/time.h" extern double difftime ( time_t __time1 , time_t __time0 ) __attribute__ ( ( __const__ ) ) ; # 192 "/usr/include/time.h" extern time_t mktime ( struct tm * __tp ) ; # 198 "/usr/include/time.h" extern size_t strftime ( char * __restrict __s , size_t __maxsize , const char * __restrict __format , const struct tm * __restrict __tp ) ; # 214 "/usr/include/time.h" # 1 "/usr/include/xlocale.h" # 19 "/usr/include/xlocale.h" # 27 "/usr/include/xlocale.h" typedef struct __locale_struct { struct locale_data * __locales [ 13 ] ; # 33 "/usr/include/xlocale.h" const unsigned short int * __ctype_b ; const int * __ctype_tolower ; const int * __ctype_toupper ; # 38 "/usr/include/xlocale.h" const char * __names [ 13 ] ; } * __locale_t ; # 42 "/usr/include/xlocale.h" typedef __locale_t locale_t ; # 216 "/usr/include/time.h" # 217 "/usr/include/time.h" extern size_t strftime_l ( char * __restrict __s , size_t __maxsize , const char * __restrict __format , const struct tm * __restrict __tp , __locale_t __loc ) ; # 232 "/usr/include/time.h" extern struct tm * gmtime ( const time_t * __timer ) ; # 236 "/usr/include/time.h" extern struct tm * localtime ( const time_t * __timer ) ; # 242 "/usr/include/time.h" extern struct tm * gmtime_r ( const time_t * __restrict __timer , struct tm * __restrict __tp ) ; # 247 "/usr/include/time.h" extern struct tm * localtime_r ( const time_t * __restrict __timer , struct tm * __restrict __tp ) ; # 254 "/usr/include/time.h" extern char * asctime ( const struct tm * __tp ) ; # 257 "/usr/include/time.h" extern char * ctime ( const time_t * __timer ) ; # 262 "/usr/include/time.h" # 265 "/usr/include/time.h" extern char * asctime_r ( const struct tm * __restrict __tp , char * __restrict __buf ) ; # 269 "/usr/include/time.h" extern char * ctime_r ( const time_t * __restrict __timer , char * __restrict __buf ) ; # 275 "/usr/include/time.h" extern char * __tzname [ 2 ] ; extern int __daylight ; extern long int __timezone ; # 282 "/usr/include/time.h" extern char * tzname [ 2 ] ; # 286 "/usr/include/time.h" extern void tzset ( void ) ; # 291 "/usr/include/time.h" extern int daylight ; extern long int timezone ; # 297 "/usr/include/time.h" extern int stime ( const time_t * __when ) ; # 303 "/usr/include/time.h" # 310 "/usr/include/time.h" # 312 "/usr/include/time.h" extern time_t timegm ( struct tm * __tp ) ; # 315 "/usr/include/time.h" extern time_t timelocal ( struct tm * __tp ) ; # 318 "/usr/include/time.h" extern int dysize ( int __year ) __attribute__ ( ( __const__ ) ) ; # 327 "/usr/include/time.h" extern int nanosleep ( const struct timespec * __requested_time , struct timespec * __remaining ) ; # 332 "/usr/include/time.h" extern int clock_getres ( clockid_t __clock_id , struct timespec * __res ) ; # 335 "/usr/include/time.h" extern int clock_gettime ( clockid_t __clock_id , struct timespec * __tp ) ; # 338 "/usr/include/time.h" extern int clock_settime ( clockid_t __clock_id , const struct timespec * __tp ) ; # 346 "/usr/include/time.h" extern int clock_nanosleep ( clockid_t __clock_id , int __flags , const struct timespec * __req , struct timespec * __rem ) ; # 351 "/usr/include/time.h" extern int clock_getcpuclockid ( pid_t __pid , clockid_t * __clock_id ) ; # 356 "/usr/include/time.h" extern int timer_create ( clockid_t __clock_id , struct sigevent * __restrict __evp , timer_t * __restrict __timerid ) ; # 361 "/usr/include/time.h" extern int timer_delete ( timer_t __timerid ) ; # 364 "/usr/include/time.h" extern int timer_settime ( timer_t __timerid , int __flags , const struct itimerspec * __restrict __value , struct itimerspec * __restrict __ovalue ) ; # 369 "/usr/include/time.h" extern int timer_gettime ( timer_t __timerid , struct itimerspec * __value ) ; # 373 "/usr/include/time.h" extern int timer_getoverrun ( timer_t __timerid ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file Direct.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file ieeefp.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/strings.h" # 17 "/usr/include/strings.h" # 24 "/usr/include/strings.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 28 "/usr/include/strings.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 30 "/usr/include/strings.h" # 31 "/usr/include/strings.h" # 38 "/usr/include/strings.h" extern int bcmp ( const void * __s1 , const void * __s2 , size_t __n ) ; # 42 "/usr/include/strings.h" extern void bcopy ( const void * __src , void * __dest , size_t __n ) ; # 45 "/usr/include/strings.h" extern void bzero ( void * __s , size_t __n ) ; # 49 "/usr/include/strings.h" extern int ffs ( int __i ) __attribute__ ( ( const ) ) ; # 52 "/usr/include/strings.h" # 76 "/usr/include/strings.h" extern char * index ( const char * __s , int __c ) ; # 80 "/usr/include/strings.h" # 104 "/usr/include/strings.h" extern char * rindex ( const char * __s , int __c ) ; # 108 "/usr/include/strings.h" extern int strcasecmp ( const char * __s1 , const char * __s2 ) ; # 112 "/usr/include/strings.h" extern int strncasecmp ( const char * __s1 , const char * __s2 , size_t __n ) ; # 119 "/usr/include/strings.h" # 1 "/usr/include/xlocale.h" # 19 "/usr/include/xlocale.h" # 27 "/usr/include/xlocale.h" typedef struct __locale_struct { struct locale_data * __locales [ 13 ] ; # 33 "/usr/include/xlocale.h" const unsigned short int * __ctype_b ; const int * __ctype_tolower ; const int * __ctype_toupper ; # 38 "/usr/include/xlocale.h" const char * __names [ 13 ] ; } * __locale_t ; # 42 "/usr/include/xlocale.h" typedef __locale_t locale_t ; # 121 "/usr/include/strings.h" # 123 "/usr/include/strings.h" extern int strcasecmp_l ( const char * __s1 , const char * __s2 , __locale_t __loc ) ; # 128 "/usr/include/strings.h" extern int strncasecmp_l ( const char * __s1 , const char * __s2 , size_t __n , __locale_t __loc ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 16 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 1 "/usr/include/sched.h" # 18 "/usr/include/sched.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/sched.h" # 25 "/usr/include/sched.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 27 "/usr/include/sched.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 30 "/usr/include/sched.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 33 "/usr/include/sched.h" # 34 "/usr/include/sched.h" # 1 "/usr/include/bits/sched.h" # 20 "/usr/include/bits/sched.h" # 29 "/usr/include/bits/sched.h" # 38 "/usr/include/bits/sched.h" # 70 "/usr/include/bits/sched.h" struct sched_param { int __sched_priority ; } ; # 79 "/usr/include/bits/sched.h" extern int clone ( int ( * __fn ) ( void * __arg ) , void * __child_stack , int __flags , void * __arg , ... ) ; # 83 "/usr/include/bits/sched.h" extern int unshare ( int __flags ) ; # 86 "/usr/include/bits/sched.h" extern int sched_getcpu ( void ) ; # 97 "/usr/include/bits/sched.h" struct __sched_param { int __sched_priority ; } ; # 108 "/usr/include/bits/sched.h" # 112 "/usr/include/bits/sched.h" typedef unsigned long int __cpu_mask ; # 115 "/usr/include/bits/sched.h" # 119 "/usr/include/bits/sched.h" typedef struct { __cpu_mask __bits [ 4096 / ( 8 * sizeof ( __cpu_mask ) ) ] ; } cpu_set_t ; # 125 "/usr/include/bits/sched.h" # 198 "/usr/include/bits/sched.h" extern int __sched_cpucount ( size_t __setsize , const cpu_set_t * __setp ) ; extern cpu_set_t * __sched_cpualloc ( size_t __count ) ; extern void __sched_cpufree ( cpu_set_t * __set ) ; # 36 "/usr/include/sched.h" # 36 "/usr/include/sched.h" # 42 "/usr/include/sched.h" extern int sched_setparam ( __pid_t __pid , const struct sched_param * __param ) ; # 46 "/usr/include/sched.h" extern int sched_getparam ( __pid_t __pid , struct sched_param * __param ) ; # 49 "/usr/include/sched.h" extern int sched_setscheduler ( __pid_t __pid , int __policy , const struct sched_param * __param ) ; # 53 "/usr/include/sched.h" extern int sched_getscheduler ( __pid_t __pid ) ; # 56 "/usr/include/sched.h" extern int sched_yield ( void ) ; # 59 "/usr/include/sched.h" extern int sched_get_priority_max ( int __algorithm ) ; # 62 "/usr/include/sched.h" extern int sched_get_priority_min ( int __algorithm ) ; # 65 "/usr/include/sched.h" extern int sched_rr_get_interval ( __pid_t __pid , struct timespec * __t ) ; # 21 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 81 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" extern int sched_setaffinity ( __pid_t __pid , size_t __cpusetsize , const cpu_set_t * __cpuset ) ; # 86 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" extern int sched_getaffinity ( __pid_t __pid , size_t __cpusetsize , cpu_set_t * __cpuset ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file cxxabi.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file dos.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file WindowsX.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/sysinfo.h" # 17 "/usr/include/sys/sysinfo.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 23 "/usr/include/sys/sysinfo.h" # 24 "/usr/include/sys/sysinfo.h" # 1 "/usr/include/linux/kernel.h" # 6 "/usr/include/linux/kernel.h" # 11 "/usr/include/linux/kernel.h" struct sysinfo { long uptime ; unsigned long loads [ 3 ] ; unsigned long totalram ; unsigned long freeram ; unsigned long sharedram ; unsigned long bufferram ; unsigned long totalswap ; unsigned long freeswap ; unsigned short procs ; unsigned short pad ; unsigned long totalhigh ; unsigned long freehigh ; unsigned int mem_unit ; char _f [ 20 - 2 * sizeof ( long ) - sizeof ( int ) ] ; } ; # 28 "/usr/include/linux/kernel.h" # 31 "/usr/include/linux/kernel.h" # 37 "/usr/include/linux/kernel.h" # 41 "/usr/include/linux/kernel.h" # 44 "/usr/include/linux/kernel.h" # 51 "/usr/include/linux/kernel.h" # 26 "/usr/include/sys/sysinfo.h" # 29 "/usr/include/sys/sysinfo.h" extern int sysinfo ( struct sysinfo * __info ) ; # 33 "/usr/include/sys/sysinfo.h" extern int get_nprocs_conf ( void ) ; # 36 "/usr/include/sys/sysinfo.h" extern int get_nprocs ( void ) ; # 40 "/usr/include/sys/sysinfo.h" extern long int get_phys_pages ( void ) ; # 43 "/usr/include/sys/sysinfo.h" extern long int get_avphys_pages ( void ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/wait.h" # 18 "/usr/include/sys/wait.h" # 22 "/usr/include/sys/wait.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 28 "/usr/include/sys/wait.h" # 1 "/usr/include/signal.h" # 17 "/usr/include/signal.h" # 21 "/usr/include/signal.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 30 "/usr/include/signal.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 50 "/usr/include/bits/sigset.h" # 54 "/usr/include/bits/sigset.h" # 102 "/usr/include/bits/sigset.h" # 104 "/usr/include/bits/sigset.h" extern int __sigismember ( const __sigset_t * , int ) ; extern int __sigaddset ( __sigset_t * , int ) ; extern int __sigdelset ( __sigset_t * , int ) ; # 34 "/usr/include/signal.h" # 36 "/usr/include/signal.h" # 41 "/usr/include/signal.h" typedef __sig_atomic_t sig_atomic_t ; # 50 "/usr/include/signal.h" typedef __sigset_t sigset_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 58 "/usr/include/signal.h" # 1 "/usr/include/bits/signum.h" # 18 "/usr/include/bits/signum.h" # 22 "/usr/include/bits/signum.h" # 32 "/usr/include/bits/signum.h" # 76 "/usr/include/bits/signum.h" # 59 "/usr/include/signal.h" # 62 "/usr/include/signal.h" typedef __pid_t pid_t ; # 68 "/usr/include/signal.h" typedef __uid_t uid_t ; # 74 "/usr/include/signal.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 77 "/usr/include/signal.h" # 78 "/usr/include/signal.h" # 1 "/usr/include/bits/siginfo.h" # 18 "/usr/include/bits/siginfo.h" # 1 "/usr/include/bits/wordsize.h" # 26 "/usr/include/bits/siginfo.h" # 32 "/usr/include/bits/siginfo.h" typedef union sigval { int sival_int ; void * sival_ptr ; } sigval_t ; # 51 "/usr/include/bits/siginfo.h" typedef struct siginfo { int si_signo ; int si_errno ; int si_code ; # 58 "/usr/include/bits/siginfo.h" union { int _pad [ ( ( 128 / sizeof ( int ) ) - 4 ) ] ; # 62 "/usr/include/bits/siginfo.h" struct { __pid_t si_pid ; __uid_t si_uid ; } _kill ; # 69 "/usr/include/bits/siginfo.h" struct { int si_tid ; int si_overrun ; sigval_t si_sigval ; } _timer ; # 77 "/usr/include/bits/siginfo.h" struct { __pid_t si_pid ; __uid_t si_uid ; sigval_t si_sigval ; } _rt ; # 85 "/usr/include/bits/siginfo.h" struct { __pid_t si_pid ; __uid_t si_uid ; int si_status ; __clock_t si_utime ; __clock_t si_stime ; } _sigchld ; # 95 "/usr/include/bits/siginfo.h" struct { void * si_addr ; } _sigfault ; # 101 "/usr/include/bits/siginfo.h" struct { long int si_band ; int si_fd ; } _sigpoll ; } _sifields ; } siginfo_t ; # 111 "/usr/include/bits/siginfo.h" # 128 "/usr/include/bits/siginfo.h" enum { SI_ASYNCNL = - 60 , # 133 "/usr/include/bits/siginfo.h" SI_TKILL = - 6 , # 135 "/usr/include/bits/siginfo.h" SI_SIGIO , # 137 "/usr/include/bits/siginfo.h" SI_ASYNCIO , # 139 "/usr/include/bits/siginfo.h" SI_MESGQ , # 141 "/usr/include/bits/siginfo.h" SI_TIMER , # 143 "/usr/include/bits/siginfo.h" SI_QUEUE , # 145 "/usr/include/bits/siginfo.h" SI_USER , # 147 "/usr/include/bits/siginfo.h" SI_KERNEL = 0x80 # 149 "/usr/include/bits/siginfo.h" } ; # 152 "/usr/include/bits/siginfo.h" enum { ILL_ILLOPC = 1 , # 157 "/usr/include/bits/siginfo.h" ILL_ILLOPN , # 159 "/usr/include/bits/siginfo.h" ILL_ILLADR , # 161 "/usr/include/bits/siginfo.h" ILL_ILLTRP , # 163 "/usr/include/bits/siginfo.h" ILL_PRVOPC , # 165 "/usr/include/bits/siginfo.h" ILL_PRVREG , # 167 "/usr/include/bits/siginfo.h" ILL_COPROC , # 169 "/usr/include/bits/siginfo.h" ILL_BADSTK # 171 "/usr/include/bits/siginfo.h" } ; # 173 "/usr/include/bits/siginfo.h" enum { FPE_INTDIV = 1 , # 178 "/usr/include/bits/siginfo.h" FPE_INTOVF , # 180 "/usr/include/bits/siginfo.h" FPE_FLTDIV , # 182 "/usr/include/bits/siginfo.h" FPE_FLTOVF , # 184 "/usr/include/bits/siginfo.h" FPE_FLTUND , # 186 "/usr/include/bits/siginfo.h" FPE_FLTRES , # 188 "/usr/include/bits/siginfo.h" FPE_FLTINV , # 190 "/usr/include/bits/siginfo.h" FPE_FLTSUB # 192 "/usr/include/bits/siginfo.h" } ; # 194 "/usr/include/bits/siginfo.h" enum { SEGV_MAPERR = 1 , # 199 "/usr/include/bits/siginfo.h" SEGV_ACCERR # 201 "/usr/include/bits/siginfo.h" } ; # 203 "/usr/include/bits/siginfo.h" enum { BUS_ADRALN = 1 , # 208 "/usr/include/bits/siginfo.h" BUS_ADRERR , # 210 "/usr/include/bits/siginfo.h" BUS_OBJERR # 212 "/usr/include/bits/siginfo.h" } ; # 214 "/usr/include/bits/siginfo.h" enum { TRAP_BRKPT = 1 , # 219 "/usr/include/bits/siginfo.h" TRAP_TRACE # 221 "/usr/include/bits/siginfo.h" } ; # 223 "/usr/include/bits/siginfo.h" enum { CLD_EXITED = 1 , # 228 "/usr/include/bits/siginfo.h" CLD_KILLED , # 230 "/usr/include/bits/siginfo.h" CLD_DUMPED , # 232 "/usr/include/bits/siginfo.h" CLD_TRAPPED , # 234 "/usr/include/bits/siginfo.h" CLD_STOPPED , # 236 "/usr/include/bits/siginfo.h" CLD_CONTINUED # 238 "/usr/include/bits/siginfo.h" } ; # 240 "/usr/include/bits/siginfo.h" enum { POLL_IN = 1 , # 245 "/usr/include/bits/siginfo.h" POLL_OUT , # 247 "/usr/include/bits/siginfo.h" POLL_MSG , # 249 "/usr/include/bits/siginfo.h" POLL_ERR , # 251 "/usr/include/bits/siginfo.h" POLL_PRI , # 253 "/usr/include/bits/siginfo.h" POLL_HUP # 255 "/usr/include/bits/siginfo.h" } ; # 265 "/usr/include/bits/siginfo.h" # 273 "/usr/include/bits/siginfo.h" typedef struct sigevent { sigval_t sigev_value ; int sigev_signo ; int sigev_notify ; # 279 "/usr/include/bits/siginfo.h" union { int _pad [ ( ( 64 / sizeof ( int ) ) - 4 ) ] ; # 283 "/usr/include/bits/siginfo.h" __pid_t _tid ; # 287 "/usr/include/bits/siginfo.h" struct { void ( * _function ) ( sigval_t ) ; void * _attribute ; } _sigev_thread ; } _sigev_un ; } sigevent_t ; # 295 "/usr/include/bits/siginfo.h" # 299 "/usr/include/bits/siginfo.h" enum { SIGEV_SIGNAL = 0 , # 304 "/usr/include/bits/siginfo.h" SIGEV_NONE , # 306 "/usr/include/bits/siginfo.h" SIGEV_THREAD , # 309 "/usr/include/bits/siginfo.h" SIGEV_THREAD_ID = 4 # 311 "/usr/include/bits/siginfo.h" } ; # 80 "/usr/include/signal.h" # 83 "/usr/include/signal.h" typedef void ( * __sighandler_t ) ( int ) ; # 88 "/usr/include/signal.h" extern __sighandler_t __sysv_signal ( int __sig , __sighandler_t __handler ) ; # 98 "/usr/include/signal.h" # 101 "/usr/include/signal.h" extern __sighandler_t signal ( int __sig , __sighandler_t __handler ) ; # 124 "/usr/include/signal.h" # 126 "/usr/include/signal.h" extern int kill ( __pid_t __pid , int __sig ) ; # 132 "/usr/include/signal.h" extern int killpg ( __pid_t __pgrp , int __sig ) ; # 137 "/usr/include/signal.h" extern int raise ( int __sig ) ; # 142 "/usr/include/signal.h" extern __sighandler_t ssignal ( int __sig , __sighandler_t __handler ) ; extern int gsignal ( int __sig ) ; # 149 "/usr/include/signal.h" extern void psignal ( int __sig , const char * __s ) ; # 154 "/usr/include/signal.h" extern void psiginfo ( const siginfo_t * __pinfo , const char * __s ) ; # 167 "/usr/include/signal.h" extern int __sigpause ( int __sig_or_mask , int __is_sig ) ; # 190 "/usr/include/signal.h" # 192 "/usr/include/signal.h" # 195 "/usr/include/signal.h" extern int sigblock ( int __mask ) ; # 198 "/usr/include/signal.h" extern int sigsetmask ( int __mask ) ; # 201 "/usr/include/signal.h" extern int siggetmask ( void ) ; # 214 "/usr/include/signal.h" # 216 "/usr/include/signal.h" typedef __sighandler_t sig_t ; # 221 "/usr/include/signal.h" extern int sigemptyset ( sigset_t * __set ) ; # 224 "/usr/include/signal.h" extern int sigfillset ( sigset_t * __set ) ; # 227 "/usr/include/signal.h" extern int sigaddset ( sigset_t * __set , int __signo ) ; # 230 "/usr/include/signal.h" extern int sigdelset ( sigset_t * __set , int __signo ) ; # 233 "/usr/include/signal.h" extern int sigismember ( const sigset_t * __set , int __signo ) ; # 251 "/usr/include/signal.h" # 1 "/usr/include/bits/sigaction.h" # 18 "/usr/include/bits/sigaction.h" # 24 "/usr/include/bits/sigaction.h" struct sigaction { # 29 "/usr/include/bits/sigaction.h" union { __sighandler_t sa_handler ; void ( * sa_sigaction ) ( int , siginfo_t * , void * ) ; } __sigaction_handler ; # 43 "/usr/include/bits/sigaction.h" __sigset_t sa_mask ; # 46 "/usr/include/bits/sigaction.h" int sa_flags ; # 49 "/usr/include/bits/sigaction.h" void ( * sa_restorer ) ( void ) ; } ; # 53 "/usr/include/bits/sigaction.h" # 68 "/usr/include/bits/sigaction.h" # 74 "/usr/include/bits/sigaction.h" # 253 "/usr/include/signal.h" # 254 "/usr/include/signal.h" extern int sigprocmask ( int __how , const sigset_t * __restrict __set , sigset_t * __restrict __oset ) ; # 262 "/usr/include/signal.h" extern int sigsuspend ( const sigset_t * __set ) ; # 265 "/usr/include/signal.h" extern int sigaction ( int __sig , const struct sigaction * __restrict __act , struct sigaction * __restrict __oact ) ; # 269 "/usr/include/signal.h" extern int sigpending ( sigset_t * __set ) ; # 276 "/usr/include/signal.h" extern int sigwait ( const sigset_t * __restrict __set , int * __restrict __sig ) ; # 284 "/usr/include/signal.h" extern int sigwaitinfo ( const sigset_t * __restrict __set , siginfo_t * __restrict __info ) ; # 292 "/usr/include/signal.h" extern int sigtimedwait ( const sigset_t * __restrict __set , siginfo_t * __restrict __info , const struct timespec * __restrict __timeout ) ; # 299 "/usr/include/signal.h" extern int sigqueue ( __pid_t __pid , int __sig , const union sigval __val ) ; # 309 "/usr/include/signal.h" extern const char * const _sys_siglist [ 65 ] ; extern const char * const sys_siglist [ 65 ] ; # 313 "/usr/include/signal.h" struct sigvec { __sighandler_t sv_handler ; int sv_mask ; # 319 "/usr/include/signal.h" int sv_flags ; # 321 "/usr/include/signal.h" } ; # 323 "/usr/include/signal.h" # 333 "/usr/include/signal.h" extern int sigvec ( int __sig , const struct sigvec * __vec , struct sigvec * __ovec ) ; # 338 "/usr/include/signal.h" # 1 "/usr/include/bits/sigcontext.h" # 17 "/usr/include/bits/sigcontext.h" # 1 "/usr/include/bits/wordsize.h" # 27 "/usr/include/bits/sigcontext.h" # 28 "/usr/include/bits/sigcontext.h" struct _fpreg { unsigned short significand [ 4 ] ; unsigned short exponent ; } ; # 34 "/usr/include/bits/sigcontext.h" struct _fpxreg { unsigned short significand [ 4 ] ; unsigned short exponent ; unsigned short padding [ 3 ] ; } ; # 41 "/usr/include/bits/sigcontext.h" struct _xmmreg { __uint32_t element [ 4 ] ; } ; # 109 "/usr/include/bits/sigcontext.h" struct _fpstate { __uint16_t cwd ; __uint16_t swd ; __uint16_t ftw ; __uint16_t fop ; __uint64_t rip ; __uint64_t rdp ; __uint32_t mxcsr ; __uint32_t mxcr_mask ; struct _fpxreg _st [ 8 ] ; struct _xmmreg _xmm [ 16 ] ; __uint32_t padding [ 24 ] ; } ; # 125 "/usr/include/bits/sigcontext.h" struct sigcontext { unsigned long r8 ; unsigned long r9 ; unsigned long r10 ; unsigned long r11 ; unsigned long r12 ; unsigned long r13 ; unsigned long r14 ; unsigned long r15 ; unsigned long rdi ; unsigned long rsi ; unsigned long rbp ; unsigned long rbx ; unsigned long rdx ; unsigned long rax ; unsigned long rcx ; unsigned long rsp ; unsigned long rip ; unsigned long eflags ; unsigned short cs ; unsigned short gs ; unsigned short fs ; unsigned short __pad0 ; unsigned long err ; unsigned long trapno ; unsigned long oldmask ; unsigned long cr2 ; struct _fpstate * fpstate ; unsigned long __reserved1 [ 8 ] ; } ; # 340 "/usr/include/signal.h" # 341 "/usr/include/signal.h" extern int sigreturn ( struct sigcontext * __scp ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 350 "/usr/include/signal.h" # 353 "/usr/include/signal.h" extern int siginterrupt ( int __sig , int __interrupt ) ; # 1 "/usr/include/bits/sigstack.h" # 18 "/usr/include/bits/sigstack.h" # 25 "/usr/include/bits/sigstack.h" struct sigstack { void * ss_sp ; int ss_onstack ; } ; # 33 "/usr/include/bits/sigstack.h" enum { SS_ONSTACK = 1 , # 38 "/usr/include/bits/sigstack.h" SS_DISABLE # 40 "/usr/include/bits/sigstack.h" } ; # 42 "/usr/include/bits/sigstack.h" # 45 "/usr/include/bits/sigstack.h" # 49 "/usr/include/bits/sigstack.h" typedef struct sigaltstack { void * ss_sp ; int ss_flags ; size_t ss_size ; } stack_t ; # 357 "/usr/include/signal.h" # 364 "/usr/include/signal.h" extern int sigstack ( struct sigstack * __ss , struct sigstack * __oss ) ; # 369 "/usr/include/signal.h" extern int sigaltstack ( const struct sigaltstack * __restrict __ss , struct sigaltstack * __restrict __oss ) ; # 393 "/usr/include/signal.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 395 "/usr/include/signal.h" # 1 "/usr/include/bits/sigthread.h" # 18 "/usr/include/bits/sigthread.h" # 27 "/usr/include/bits/sigthread.h" # 30 "/usr/include/bits/sigthread.h" extern int pthread_sigmask ( int __how , const __sigset_t * __restrict __newmask , __sigset_t * __restrict __oldmask ) ; # 35 "/usr/include/bits/sigthread.h" extern int pthread_kill ( pthread_t __threadid , int __signo ) ; # 396 "/usr/include/signal.h" # 399 "/usr/include/signal.h" # 401 "/usr/include/signal.h" extern int __libc_current_sigrtmin ( void ) ; extern int __libc_current_sigrtmax ( void ) ; # 32 "/usr/include/sys/wait.h" # 1 "/usr/include/sys/resource.h" # 17 "/usr/include/sys/resource.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/sys/resource.h" # 24 "/usr/include/sys/resource.h" # 1 "/usr/include/bits/resource.h" # 19 "/usr/include/bits/resource.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 26 "/usr/include/bits/resource.h" # 30 "/usr/include/bits/resource.h" # 32 "/usr/include/bits/resource.h" enum __rlimit_resource { RLIMIT_CPU = 0 , # 39 "/usr/include/bits/resource.h" RLIMIT_FSIZE = 1 , # 43 "/usr/include/bits/resource.h" RLIMIT_DATA = 2 , # 47 "/usr/include/bits/resource.h" RLIMIT_STACK = 3 , # 51 "/usr/include/bits/resource.h" RLIMIT_CORE = 4 , # 55 "/usr/include/bits/resource.h" # 58 "/usr/include/bits/resource.h" __RLIMIT_RSS = 5 , # 62 "/usr/include/bits/resource.h" RLIMIT_NOFILE = 7 , __RLIMIT_OFILE = RLIMIT_NOFILE , # 68 "/usr/include/bits/resource.h" RLIMIT_AS = 9 , # 72 "/usr/include/bits/resource.h" __RLIMIT_NPROC = 6 , # 76 "/usr/include/bits/resource.h" __RLIMIT_MEMLOCK = 8 , # 80 "/usr/include/bits/resource.h" __RLIMIT_LOCKS = 10 , # 84 "/usr/include/bits/resource.h" __RLIMIT_SIGPENDING = 11 , # 88 "/usr/include/bits/resource.h" __RLIMIT_MSGQUEUE = 12 , # 92 "/usr/include/bits/resource.h" # 94 "/usr/include/bits/resource.h" __RLIMIT_NICE = 13 , # 98 "/usr/include/bits/resource.h" __RLIMIT_RTPRIO = 14 , # 103 "/usr/include/bits/resource.h" __RLIMIT_NLIMITS = 15 , __RLIM_NLIMITS = __RLIMIT_NLIMITS # 107 "/usr/include/bits/resource.h" } ; # 109 "/usr/include/bits/resource.h" # 120 "/usr/include/bits/resource.h" # 125 "/usr/include/bits/resource.h" # 127 "/usr/include/bits/resource.h" typedef __rlim_t rlim_t ; # 135 "/usr/include/bits/resource.h" struct rlimit { rlim_t rlim_cur ; rlim_t rlim_max ; } ; # 153 "/usr/include/bits/resource.h" enum __rusage_who { RUSAGE_SELF = 0 , # 160 "/usr/include/bits/resource.h" RUSAGE_CHILDREN = - 1 # 172 "/usr/include/bits/resource.h" } ; # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 176 "/usr/include/bits/resource.h" # 177 "/usr/include/bits/resource.h" struct rusage { struct timeval ru_utime ; struct timeval ru_stime ; long int ru_maxrss ; long int ru_ixrss ; long int ru_idrss ; long int ru_isrss ; long int ru_minflt ; long int ru_majflt ; long int ru_nswap ; long int ru_inblock ; long int ru_oublock ; long int ru_msgsnd ; long int ru_msgrcv ; long int ru_nsignals ; # 213 "/usr/include/bits/resource.h" long int ru_nvcsw ; long int ru_nivcsw ; } ; # 220 "/usr/include/bits/resource.h" # 225 "/usr/include/bits/resource.h" enum __priority_which { PRIO_PROCESS = 0 , # 230 "/usr/include/bits/resource.h" PRIO_PGRP = 1 , # 232 "/usr/include/bits/resource.h" PRIO_USER = 2 # 234 "/usr/include/bits/resource.h" } ; # 26 "/usr/include/sys/resource.h" # 28 "/usr/include/sys/resource.h" typedef __id_t id_t ; # 37 "/usr/include/sys/resource.h" # 43 "/usr/include/sys/resource.h" typedef int __rlimit_resource_t ; typedef int __rusage_who_t ; typedef int __priority_which_t ; # 49 "/usr/include/sys/resource.h" # 51 "/usr/include/sys/resource.h" extern int getrlimit ( __rlimit_resource_t __resource , struct rlimit * __rlimits ) ; # 68 "/usr/include/sys/resource.h" # 70 "/usr/include/sys/resource.h" extern int setrlimit ( __rlimit_resource_t __resource , const struct rlimit * __rlimits ) ; # 87 "/usr/include/sys/resource.h" extern int getrusage ( __rusage_who_t __who , struct rusage * __usage ) ; # 93 "/usr/include/sys/resource.h" extern int getpriority ( __priority_which_t __which , id_t __who ) ; # 97 "/usr/include/sys/resource.h" extern int setpriority ( __priority_which_t __which , id_t __who , int __prio ) ; # 33 "/usr/include/sys/wait.h" # 34 "/usr/include/sys/wait.h" # 37 "/usr/include/sys/wait.h" # 1 "/usr/include/bits/waitflags.h" # 18 "/usr/include/bits/waitflags.h" # 25 "/usr/include/bits/waitflags.h" # 29 "/usr/include/bits/waitflags.h" # 39 "/usr/include/sys/wait.h" # 43 "/usr/include/sys/wait.h" # 56 "/usr/include/sys/wait.h" # 79 "/usr/include/sys/wait.h" # 1 "/usr/include/bits/waitstatus.h" # 18 "/usr/include/bits/waitstatus.h" # 25 "/usr/include/bits/waitstatus.h" # 28 "/usr/include/bits/waitstatus.h" # 31 "/usr/include/bits/waitstatus.h" # 34 "/usr/include/bits/waitstatus.h" # 37 "/usr/include/bits/waitstatus.h" # 40 "/usr/include/bits/waitstatus.h" # 44 "/usr/include/bits/waitstatus.h" # 48 "/usr/include/bits/waitstatus.h" # 53 "/usr/include/bits/waitstatus.h" # 56 "/usr/include/bits/waitstatus.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 66 "/usr/include/bits/waitstatus.h" # 67 "/usr/include/bits/waitstatus.h" union wait { int w_status ; struct { # 73 "/usr/include/bits/waitstatus.h" unsigned int __w_termsig : 7 ; unsigned int __w_coredump : 1 ; unsigned int __w_retcode : 8 ; unsigned int : 16 ; # 84 "/usr/include/bits/waitstatus.h" } __wait_terminated ; struct { # 88 "/usr/include/bits/waitstatus.h" unsigned int __w_stopval : 8 ; unsigned int __w_stopsig : 8 ; unsigned int : 16 ; # 97 "/usr/include/bits/waitstatus.h" } __wait_stopped ; } ; # 81 "/usr/include/sys/wait.h" # 100 "/usr/include/sys/wait.h" # 102 "/usr/include/sys/wait.h" typedef enum { P_ALL , P_PID , P_PGID } idtype_t ; # 115 "/usr/include/sys/wait.h" extern __pid_t wait ( void * __stat_loc ) ; # 119 "/usr/include/sys/wait.h" # 138 "/usr/include/sys/wait.h" extern __pid_t waitpid ( __pid_t __pid , int * __stat_loc , int __options ) ; # 1 "/usr/include/bits/siginfo.h" # 18 "/usr/include/bits/siginfo.h" # 1 "/usr/include/bits/wordsize.h" # 26 "/usr/include/bits/siginfo.h" # 144 "/usr/include/sys/wait.h" # 154 "/usr/include/sys/wait.h" extern int waitid ( idtype_t __idtype , __id_t __id , siginfo_t * __infop , int __options ) ; # 161 "/usr/include/sys/wait.h" struct rusage ; # 168 "/usr/include/sys/wait.h" extern __pid_t wait3 ( void * __stat_loc , int __options , struct rusage * __usage ) ; # 174 "/usr/include/sys/wait.h" extern __pid_t wait4 ( __pid_t __pid , void * __stat_loc , int __options , struct rusage * __usage ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/stdlib.h" # 17 "/usr/include/stdlib.h" # 21 "/usr/include/stdlib.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 26 "/usr/include/stdlib.h" # 27 "/usr/include/stdlib.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 290 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 310 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 326 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef int wchar_t ; # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 34 "/usr/include/stdlib.h" # 97 "/usr/include/stdlib.h" typedef struct { int quot ; int rem ; } div_t ; # 104 "/usr/include/stdlib.h" # 106 "/usr/include/stdlib.h" typedef struct { long int quot ; long int rem ; } ldiv_t ; # 117 "/usr/include/stdlib.h" typedef struct { long long int quot ; long long int rem ; } lldiv_t ; # 128 "/usr/include/stdlib.h" # 133 "/usr/include/stdlib.h" # 138 "/usr/include/stdlib.h" # 140 "/usr/include/stdlib.h" extern size_t __ctype_get_mb_cur_max ( void ) ; # 144 "/usr/include/stdlib.h" extern double atof ( const char * __nptr ) ; extern int atoi ( const char * __nptr ) ; extern long int atol ( const char * __nptr ) ; # 157 "/usr/include/stdlib.h" extern long long int atoll ( const char * __nptr ) ; # 164 "/usr/include/stdlib.h" extern double strtod ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 172 "/usr/include/stdlib.h" extern float strtof ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 176 "/usr/include/stdlib.h" extern long double strtold ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 183 "/usr/include/stdlib.h" extern long int strtol ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; extern unsigned long int strtoul ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 194 "/usr/include/stdlib.h" # 196 "/usr/include/stdlib.h" extern long long int strtoq ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 201 "/usr/include/stdlib.h" extern unsigned long long int strtouq ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 208 "/usr/include/stdlib.h" # 210 "/usr/include/stdlib.h" extern long long int strtoll ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 215 "/usr/include/stdlib.h" extern unsigned long long int strtoull ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 310 "/usr/include/stdlib.h" extern char * l64a ( long int __n ) ; # 313 "/usr/include/stdlib.h" extern long int a64l ( const char * __s ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 321 "/usr/include/stdlib.h" # 325 "/usr/include/stdlib.h" extern long int random ( void ) ; # 329 "/usr/include/stdlib.h" extern void srandom ( unsigned int __seed ) ; # 335 "/usr/include/stdlib.h" extern char * initstate ( unsigned int __seed , char * __statebuf , size_t __statelen ) ; # 340 "/usr/include/stdlib.h" extern char * setstate ( char * __statebuf ) ; # 347 "/usr/include/stdlib.h" # 349 "/usr/include/stdlib.h" struct random_data { int32_t * fptr ; int32_t * rptr ; int32_t * state ; int rand_type ; int rand_deg ; int rand_sep ; int32_t * end_ptr ; } ; # 360 "/usr/include/stdlib.h" extern int random_r ( struct random_data * __restrict __buf , int32_t * __restrict __result ) ; # 363 "/usr/include/stdlib.h" extern int srandom_r ( unsigned int __seed , struct random_data * __buf ) ; # 366 "/usr/include/stdlib.h" extern int initstate_r ( unsigned int __seed , char * __restrict __statebuf , size_t __statelen , struct random_data * __restrict __buf ) ; # 371 "/usr/include/stdlib.h" extern int setstate_r ( char * __restrict __statebuf , struct random_data * __restrict __buf ) ; # 379 "/usr/include/stdlib.h" extern int rand ( void ) ; extern void srand ( unsigned int __seed ) ; # 386 "/usr/include/stdlib.h" extern int rand_r ( unsigned int * __seed ) ; # 392 "/usr/include/stdlib.h" # 394 "/usr/include/stdlib.h" extern double drand48 ( void ) ; extern double erand48 ( unsigned short int __xsubi [ 3 ] ) ; # 398 "/usr/include/stdlib.h" extern long int lrand48 ( void ) ; extern long int nrand48 ( unsigned short int __xsubi [ 3 ] ) ; # 403 "/usr/include/stdlib.h" extern long int mrand48 ( void ) ; extern long int jrand48 ( unsigned short int __xsubi [ 3 ] ) ; # 408 "/usr/include/stdlib.h" extern void srand48 ( long int __seedval ) ; extern unsigned short int * seed48 ( unsigned short int __seed16v [ 3 ] ) ; extern void lcong48 ( unsigned short int __param [ 7 ] ) ; # 417 "/usr/include/stdlib.h" struct drand48_data { unsigned short int __x [ 3 ] ; unsigned short int __old_x [ 3 ] ; unsigned short int __c ; unsigned short int __init ; unsigned long long int __a ; } ; # 427 "/usr/include/stdlib.h" extern int drand48_r ( struct drand48_data * __restrict __buffer , double * __restrict __result ) ; extern int erand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , double * __restrict __result ) ; # 434 "/usr/include/stdlib.h" extern int lrand48_r ( struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; extern int nrand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; # 443 "/usr/include/stdlib.h" extern int mrand48_r ( struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; extern int jrand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; # 452 "/usr/include/stdlib.h" extern int srand48_r ( long int __seedval , struct drand48_data * __buffer ) ; # 456 "/usr/include/stdlib.h" extern int seed48_r ( unsigned short int __seed16v [ 3 ] , struct drand48_data * __buffer ) ; # 459 "/usr/include/stdlib.h" extern int lcong48_r ( unsigned short int __param [ 7 ] , struct drand48_data * __buffer ) ; # 470 "/usr/include/stdlib.h" extern void * malloc ( size_t __size ) ; extern void * calloc ( size_t __nmemb , size_t __size ) ; # 481 "/usr/include/stdlib.h" # 484 "/usr/include/stdlib.h" extern void * realloc ( void * __ptr , size_t __size ) ; extern void free ( void * __ptr ) ; # 492 "/usr/include/stdlib.h" extern void cfree ( void * __ptr ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 29 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 33 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 39 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" extern void * __alloca ( size_t __size ) ; extern void * alloca ( size_t __size ) ; extern void * __builtin_alloca ( size_t __size ) ; # 498 "/usr/include/stdlib.h" # 501 "/usr/include/stdlib.h" extern void * valloc ( size_t __size ) ; # 506 "/usr/include/stdlib.h" extern int posix_memalign ( void * * __memptr , size_t __alignment , size_t __size ) ; # 512 "/usr/include/stdlib.h" extern void abort ( void ) __attribute__ ( ( __noreturn__ ) ) ; # 516 "/usr/include/stdlib.h" extern int atexit ( void ( * __func ) ( void ) ) ; # 534 "/usr/include/stdlib.h" extern int on_exit ( void ( * __func ) ( int __status , void * __arg ) , void * __arg ) ; # 542 "/usr/include/stdlib.h" extern void exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 558 "/usr/include/stdlib.h" extern void _Exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 565 "/usr/include/stdlib.h" extern char * getenv ( const char * __name ) ; # 570 "/usr/include/stdlib.h" extern char * __secure_getenv ( const char * __name ) ; # 575 "/usr/include/stdlib.h" # 577 "/usr/include/stdlib.h" extern int putenv ( char * __string ) ; # 583 "/usr/include/stdlib.h" extern int setenv ( const char * __name , const char * __value , int __replace ) ; # 587 "/usr/include/stdlib.h" extern int unsetenv ( const char * __name ) ; # 594 "/usr/include/stdlib.h" extern int clearenv ( void ) ; # 603 "/usr/include/stdlib.h" extern char * mktemp ( char * __template ) ; # 613 "/usr/include/stdlib.h" # 615 "/usr/include/stdlib.h" extern int mkstemp ( char * __template ) ; # 635 "/usr/include/stdlib.h" # 637 "/usr/include/stdlib.h" extern int mkstemps ( char * __template , int __suffixlen ) ; # 657 "/usr/include/stdlib.h" extern char * mkdtemp ( char * __template ) ; # 711 "/usr/include/stdlib.h" extern int system ( const char * __command ) ; # 728 "/usr/include/stdlib.h" extern char * realpath ( const char * __restrict __name , char * __restrict __resolved ) ; # 734 "/usr/include/stdlib.h" # 737 "/usr/include/stdlib.h" typedef int ( * __compar_fn_t ) ( const void * , const void * ) ; # 749 "/usr/include/stdlib.h" extern void * bsearch ( const void * __key , const void * __base , size_t __nmemb , size_t __size , __compar_fn_t __compar ) ; # 755 "/usr/include/stdlib.h" extern void qsort ( void * __base , size_t __nmemb , size_t __size , __compar_fn_t __compar ) ; # 765 "/usr/include/stdlib.h" extern int abs ( int __x ) __attribute__ ( ( __const__ ) ) ; extern long int labs ( long int __x ) __attribute__ ( ( __const__ ) ) ; # 771 "/usr/include/stdlib.h" extern long long int llabs ( long long int __x ) __attribute__ ( ( __const__ ) ) ; # 778 "/usr/include/stdlib.h" extern div_t div ( int __numer , int __denom ) __attribute__ ( ( __const__ ) ) ; extern ldiv_t ldiv ( long int __numer , long int __denom ) __attribute__ ( ( __const__ ) ) ; # 788 "/usr/include/stdlib.h" extern lldiv_t lldiv ( long long int __numer , long long int __denom ) __attribute__ ( ( __const__ ) ) ; # 797 "/usr/include/stdlib.h" # 801 "/usr/include/stdlib.h" extern char * ecvt ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; # 807 "/usr/include/stdlib.h" extern char * fcvt ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; # 813 "/usr/include/stdlib.h" extern char * gcvt ( double __value , int __ndigit , char * __buf ) ; # 819 "/usr/include/stdlib.h" extern char * qecvt ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; extern char * qfcvt ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; extern char * qgcvt ( long double __value , int __ndigit , char * __buf ) ; # 831 "/usr/include/stdlib.h" extern int ecvt_r ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; extern int fcvt_r ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; # 839 "/usr/include/stdlib.h" extern int qecvt_r ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; extern int qfcvt_r ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; # 853 "/usr/include/stdlib.h" extern int mblen ( const char * __s , size_t __n ) ; # 856 "/usr/include/stdlib.h" extern int mbtowc ( wchar_t * __restrict __pwc , const char * __restrict __s , size_t __n ) ; # 860 "/usr/include/stdlib.h" extern int wctomb ( char * __s , wchar_t __wchar ) ; # 864 "/usr/include/stdlib.h" extern size_t mbstowcs ( wchar_t * __restrict __pwcs , const char * __restrict __s , size_t __n ) ; extern size_t wcstombs ( char * __restrict __s , const wchar_t * __restrict __pwcs , size_t __n ) ; # 878 "/usr/include/stdlib.h" extern int rpmatch ( const char * __response ) ; # 903 "/usr/include/stdlib.h" # 906 "/usr/include/stdlib.h" extern int posix_openpt ( int __oflag ) ; # 941 "/usr/include/stdlib.h" extern int getloadavg ( double __loadavg [ ] , int __nelem ) ; # 947 "/usr/include/stdlib.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/pthread.h" # 18 "/usr/include/pthread.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/pthread.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 25 "/usr/include/pthread.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 16 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 1 "/usr/include/sched.h" # 18 "/usr/include/sched.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 24 "/usr/include/sched.h" # 25 "/usr/include/sched.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 27 "/usr/include/sched.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 30 "/usr/include/sched.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 33 "/usr/include/sched.h" # 34 "/usr/include/sched.h" # 1 "/usr/include/bits/sched.h" # 20 "/usr/include/bits/sched.h" # 29 "/usr/include/bits/sched.h" # 38 "/usr/include/bits/sched.h" # 70 "/usr/include/bits/sched.h" struct sched_param { int __sched_priority ; } ; # 79 "/usr/include/bits/sched.h" extern int clone ( int ( * __fn ) ( void * __arg ) , void * __child_stack , int __flags , void * __arg , ... ) ; # 83 "/usr/include/bits/sched.h" extern int unshare ( int __flags ) ; # 86 "/usr/include/bits/sched.h" extern int sched_getcpu ( void ) ; # 97 "/usr/include/bits/sched.h" struct __sched_param { int __sched_priority ; } ; # 108 "/usr/include/bits/sched.h" # 112 "/usr/include/bits/sched.h" typedef unsigned long int __cpu_mask ; # 115 "/usr/include/bits/sched.h" # 119 "/usr/include/bits/sched.h" typedef struct { __cpu_mask __bits [ 4096 / ( 8 * sizeof ( __cpu_mask ) ) ] ; } cpu_set_t ; # 125 "/usr/include/bits/sched.h" # 198 "/usr/include/bits/sched.h" extern int __sched_cpucount ( size_t __setsize , const cpu_set_t * __setp ) ; extern cpu_set_t * __sched_cpualloc ( size_t __count ) ; extern void __sched_cpufree ( cpu_set_t * __set ) ; # 36 "/usr/include/sched.h" # 36 "/usr/include/sched.h" # 42 "/usr/include/sched.h" extern int sched_setparam ( __pid_t __pid , const struct sched_param * __param ) ; # 46 "/usr/include/sched.h" extern int sched_getparam ( __pid_t __pid , struct sched_param * __param ) ; # 49 "/usr/include/sched.h" extern int sched_setscheduler ( __pid_t __pid , int __policy , const struct sched_param * __param ) ; # 53 "/usr/include/sched.h" extern int sched_getscheduler ( __pid_t __pid ) ; # 56 "/usr/include/sched.h" extern int sched_yield ( void ) ; # 59 "/usr/include/sched.h" extern int sched_get_priority_max ( int __algorithm ) ; # 62 "/usr/include/sched.h" extern int sched_get_priority_min ( int __algorithm ) ; # 65 "/usr/include/sched.h" extern int sched_rr_get_interval ( __pid_t __pid , struct timespec * __t ) ; # 21 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 81 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" extern int sched_setaffinity ( __pid_t __pid , size_t __cpusetsize , const cpu_set_t * __cpuset ) ; # 86 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" extern int sched_getaffinity ( __pid_t __pid , size_t __cpusetsize , cpu_set_t * __cpuset ) ; # 26 "/usr/include/pthread.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 29 "/usr/include/time.h" # 35 "/usr/include/time.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 39 "/usr/include/time.h" # 41 "/usr/include/time.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 30 "/usr/include/bits/time.h" # 33 "/usr/include/bits/time.h" # 45 "/usr/include/bits/time.h" # 47 "/usr/include/bits/time.h" # 49 "/usr/include/bits/time.h" # 51 "/usr/include/bits/time.h" # 54 "/usr/include/bits/time.h" # 43 "/usr/include/time.h" # 44 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 57 "/usr/include/time.h" # 59 "/usr/include/time.h" typedef __clock_t clock_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 132 "/usr/include/time.h" struct tm { int tm_sec ; int tm_min ; int tm_hour ; int tm_mday ; int tm_mon ; int tm_year ; int tm_wday ; int tm_yday ; int tm_isdst ; # 146 "/usr/include/time.h" long int tm_gmtoff ; const char * tm_zone ; # 152 "/usr/include/time.h" } ; # 160 "/usr/include/time.h" struct itimerspec { struct timespec it_interval ; struct timespec it_value ; } ; # 167 "/usr/include/time.h" struct sigevent ; # 174 "/usr/include/time.h" typedef __pid_t pid_t ; # 182 "/usr/include/time.h" extern clock_t clock ( void ) ; # 185 "/usr/include/time.h" extern time_t time ( time_t * __timer ) ; # 188 "/usr/include/time.h" extern double difftime ( time_t __time1 , time_t __time0 ) __attribute__ ( ( __const__ ) ) ; # 192 "/usr/include/time.h" extern time_t mktime ( struct tm * __tp ) ; # 198 "/usr/include/time.h" extern size_t strftime ( char * __restrict __s , size_t __maxsize , const char * __restrict __format , const struct tm * __restrict __tp ) ; # 214 "/usr/include/time.h" # 1 "/usr/include/xlocale.h" # 19 "/usr/include/xlocale.h" # 27 "/usr/include/xlocale.h" typedef struct __locale_struct { struct locale_data * __locales [ 13 ] ; # 33 "/usr/include/xlocale.h" const unsigned short int * __ctype_b ; const int * __ctype_tolower ; const int * __ctype_toupper ; # 38 "/usr/include/xlocale.h" const char * __names [ 13 ] ; } * __locale_t ; # 42 "/usr/include/xlocale.h" typedef __locale_t locale_t ; # 216 "/usr/include/time.h" # 217 "/usr/include/time.h" extern size_t strftime_l ( char * __restrict __s , size_t __maxsize , const char * __restrict __format , const struct tm * __restrict __tp , __locale_t __loc ) ; # 232 "/usr/include/time.h" extern struct tm * gmtime ( const time_t * __timer ) ; # 236 "/usr/include/time.h" extern struct tm * localtime ( const time_t * __timer ) ; # 242 "/usr/include/time.h" extern struct tm * gmtime_r ( const time_t * __restrict __timer , struct tm * __restrict __tp ) ; # 247 "/usr/include/time.h" extern struct tm * localtime_r ( const time_t * __restrict __timer , struct tm * __restrict __tp ) ; # 254 "/usr/include/time.h" extern char * asctime ( const struct tm * __tp ) ; # 257 "/usr/include/time.h" extern char * ctime ( const time_t * __timer ) ; # 262 "/usr/include/time.h" # 265 "/usr/include/time.h" extern char * asctime_r ( const struct tm * __restrict __tp , char * __restrict __buf ) ; # 269 "/usr/include/time.h" extern char * ctime_r ( const time_t * __restrict __timer , char * __restrict __buf ) ; # 275 "/usr/include/time.h" extern char * __tzname [ 2 ] ; extern int __daylight ; extern long int __timezone ; # 282 "/usr/include/time.h" extern char * tzname [ 2 ] ; # 286 "/usr/include/time.h" extern void tzset ( void ) ; # 291 "/usr/include/time.h" extern int daylight ; extern long int timezone ; # 297 "/usr/include/time.h" extern int stime ( const time_t * __when ) ; # 303 "/usr/include/time.h" # 310 "/usr/include/time.h" # 312 "/usr/include/time.h" extern time_t timegm ( struct tm * __tp ) ; # 315 "/usr/include/time.h" extern time_t timelocal ( struct tm * __tp ) ; # 318 "/usr/include/time.h" extern int dysize ( int __year ) __attribute__ ( ( __const__ ) ) ; # 327 "/usr/include/time.h" extern int nanosleep ( const struct timespec * __requested_time , struct timespec * __remaining ) ; # 332 "/usr/include/time.h" extern int clock_getres ( clockid_t __clock_id , struct timespec * __res ) ; # 335 "/usr/include/time.h" extern int clock_gettime ( clockid_t __clock_id , struct timespec * __tp ) ; # 338 "/usr/include/time.h" extern int clock_settime ( clockid_t __clock_id , const struct timespec * __tp ) ; # 346 "/usr/include/time.h" extern int clock_nanosleep ( clockid_t __clock_id , int __flags , const struct timespec * __req , struct timespec * __rem ) ; # 351 "/usr/include/time.h" extern int clock_getcpuclockid ( pid_t __pid , clockid_t * __clock_id ) ; # 356 "/usr/include/time.h" extern int timer_create ( clockid_t __clock_id , struct sigevent * __restrict __evp , timer_t * __restrict __timerid ) ; # 361 "/usr/include/time.h" extern int timer_delete ( timer_t __timerid ) ; # 364 "/usr/include/time.h" extern int timer_settime ( timer_t __timerid , int __flags , const struct itimerspec * __restrict __value , struct itimerspec * __restrict __ovalue ) ; # 369 "/usr/include/time.h" extern int timer_gettime ( timer_t __timerid , struct itimerspec * __value ) ; # 373 "/usr/include/time.h" extern int timer_getoverrun ( timer_t __timerid ) ; # 27 "/usr/include/pthread.h" # 1 "/usr/include/signal.h" # 17 "/usr/include/signal.h" # 21 "/usr/include/signal.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 30 "/usr/include/signal.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 34 "/usr/include/signal.h" # 36 "/usr/include/signal.h" # 50 "/usr/include/signal.h" typedef __sigset_t sigset_t ; # 30 "/usr/include/pthread.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 31 "/usr/include/pthread.h" # 1 "/usr/include/bits/setjmp.h" # 17 "/usr/include/bits/setjmp.h" # 19 "/usr/include/bits/setjmp.h" # 1 "/usr/include/bits/wordsize.h" # 28 "/usr/include/bits/setjmp.h" # 32 "/usr/include/bits/setjmp.h" typedef long int __jmp_buf [ 8 ] ; # 32 "/usr/include/pthread.h" # 1 "/usr/include/bits/wordsize.h" # 33 "/usr/include/pthread.h" # 35 "/usr/include/pthread.h" enum { PTHREAD_CREATE_JOINABLE , # 40 "/usr/include/pthread.h" PTHREAD_CREATE_DETACHED # 42 "/usr/include/pthread.h" } ; # 45 "/usr/include/pthread.h" enum { PTHREAD_MUTEX_TIMED_NP , PTHREAD_MUTEX_RECURSIVE_NP , PTHREAD_MUTEX_ERRORCHECK_NP , PTHREAD_MUTEX_ADAPTIVE_NP # 63 "/usr/include/pthread.h" } ; # 67 "/usr/include/pthread.h" enum { PTHREAD_MUTEX_STALLED , PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED , PTHREAD_MUTEX_ROBUST , PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST } ; # 89 "/usr/include/pthread.h" # 115 "/usr/include/pthread.h" # 117 "/usr/include/pthread.h" enum { PTHREAD_RWLOCK_PREFER_READER_NP , PTHREAD_RWLOCK_PREFER_WRITER_NP , PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP , PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP } ; # 125 "/usr/include/pthread.h" # 148 "/usr/include/pthread.h" enum { PTHREAD_INHERIT_SCHED , # 153 "/usr/include/pthread.h" PTHREAD_EXPLICIT_SCHED # 155 "/usr/include/pthread.h" } ; # 158 "/usr/include/pthread.h" enum { PTHREAD_SCOPE_SYSTEM , # 163 "/usr/include/pthread.h" PTHREAD_SCOPE_PROCESS # 165 "/usr/include/pthread.h" } ; # 168 "/usr/include/pthread.h" enum { PTHREAD_PROCESS_PRIVATE , # 173 "/usr/include/pthread.h" PTHREAD_PROCESS_SHARED # 175 "/usr/include/pthread.h" } ; # 179 "/usr/include/pthread.h" # 183 "/usr/include/pthread.h" struct _pthread_cleanup_buffer { void ( * __routine ) ( void * ) ; void * __arg ; int __canceltype ; struct _pthread_cleanup_buffer * __prev ; } ; # 192 "/usr/include/pthread.h" enum { PTHREAD_CANCEL_ENABLE , # 197 "/usr/include/pthread.h" PTHREAD_CANCEL_DISABLE # 199 "/usr/include/pthread.h" } ; enum { PTHREAD_CANCEL_DEFERRED , # 204 "/usr/include/pthread.h" PTHREAD_CANCEL_ASYNCHRONOUS # 206 "/usr/include/pthread.h" } ; # 210 "/usr/include/pthread.h" # 217 "/usr/include/pthread.h" # 226 "/usr/include/pthread.h" extern int pthread_create ( pthread_t * __restrict __newthread , const pthread_attr_t * __restrict __attr , void * ( * __start_routine ) ( void * ) , void * __restrict __arg ) ; # 235 "/usr/include/pthread.h" extern void pthread_exit ( void * __retval ) __attribute__ ( ( __noreturn__ ) ) ; # 243 "/usr/include/pthread.h" extern int pthread_join ( pthread_t __th , void * * __thread_return ) ; # 264 "/usr/include/pthread.h" extern int pthread_detach ( pthread_t __th ) ; # 268 "/usr/include/pthread.h" extern pthread_t pthread_self ( void ) __attribute__ ( ( __const__ ) ) ; # 271 "/usr/include/pthread.h" extern int pthread_equal ( pthread_t __thread1 , pthread_t __thread2 ) ; # 275 "/usr/include/pthread.h" # 279 "/usr/include/pthread.h" extern int pthread_attr_init ( pthread_attr_t * __attr ) ; # 282 "/usr/include/pthread.h" extern int pthread_attr_destroy ( pthread_attr_t * __attr ) ; # 286 "/usr/include/pthread.h" extern int pthread_attr_getdetachstate ( const pthread_attr_t * __attr , int * __detachstate ) ; # 291 "/usr/include/pthread.h" extern int pthread_attr_setdetachstate ( pthread_attr_t * __attr , int __detachstate ) ; # 297 "/usr/include/pthread.h" extern int pthread_attr_getguardsize ( const pthread_attr_t * __attr , size_t * __guardsize ) ; # 302 "/usr/include/pthread.h" extern int pthread_attr_setguardsize ( pthread_attr_t * __attr , size_t __guardsize ) ; # 308 "/usr/include/pthread.h" extern int pthread_attr_getschedparam ( const pthread_attr_t * __restrict __attr , struct sched_param * __restrict __param ) ; # 314 "/usr/include/pthread.h" extern int pthread_attr_setschedparam ( pthread_attr_t * __restrict __attr , const struct sched_param * __restrict __param ) ; # 319 "/usr/include/pthread.h" extern int pthread_attr_getschedpolicy ( const pthread_attr_t * __restrict __attr , int * __restrict __policy ) ; # 324 "/usr/include/pthread.h" extern int pthread_attr_setschedpolicy ( pthread_attr_t * __attr , int __policy ) ; # 328 "/usr/include/pthread.h" extern int pthread_attr_getinheritsched ( const pthread_attr_t * __restrict __attr , int * __restrict __inherit ) ; # 333 "/usr/include/pthread.h" extern int pthread_attr_setinheritsched ( pthread_attr_t * __attr , int __inherit ) ; # 339 "/usr/include/pthread.h" extern int pthread_attr_getscope ( const pthread_attr_t * __restrict __attr , int * __restrict __scope ) ; # 344 "/usr/include/pthread.h" extern int pthread_attr_setscope ( pthread_attr_t * __attr , int __scope ) ; # 348 "/usr/include/pthread.h" extern int pthread_attr_getstackaddr ( const pthread_attr_t * __restrict __attr , void * * __restrict __stackaddr ) ; # 356 "/usr/include/pthread.h" extern int pthread_attr_setstackaddr ( pthread_attr_t * __attr , void * __stackaddr ) ; # 361 "/usr/include/pthread.h" extern int pthread_attr_getstacksize ( const pthread_attr_t * __restrict __attr , size_t * __restrict __stacksize ) ; # 368 "/usr/include/pthread.h" extern int pthread_attr_setstacksize ( pthread_attr_t * __attr , size_t __stacksize ) ; # 374 "/usr/include/pthread.h" extern int pthread_attr_getstack ( const pthread_attr_t * __restrict __attr , void * * __restrict __stackaddr , size_t * __restrict __stacksize ) ; # 382 "/usr/include/pthread.h" extern int pthread_attr_setstack ( pthread_attr_t * __attr , void * __stackaddr , size_t __stacksize ) ; # 411 "/usr/include/pthread.h" # 414 "/usr/include/pthread.h" extern int pthread_setschedparam ( pthread_t __target_thread , int __policy , const struct sched_param * __param ) ; # 419 "/usr/include/pthread.h" extern int pthread_getschedparam ( pthread_t __target_thread , int * __restrict __policy , struct sched_param * __restrict __param ) ; # 425 "/usr/include/pthread.h" extern int pthread_setschedprio ( pthread_t __target_thread , int __prio ) ; # 459 "/usr/include/pthread.h" # 467 "/usr/include/pthread.h" extern int pthread_once ( pthread_once_t * __once_control , void ( * __init_routine ) ( void ) ) ; # 476 "/usr/include/pthread.h" # 479 "/usr/include/pthread.h" extern int pthread_setcancelstate ( int __state , int * __oldstate ) ; # 483 "/usr/include/pthread.h" extern int pthread_setcanceltype ( int __type , int * __oldtype ) ; # 486 "/usr/include/pthread.h" extern int pthread_cancel ( pthread_t __th ) ; # 491 "/usr/include/pthread.h" extern void pthread_testcancel ( void ) ; # 495 "/usr/include/pthread.h" # 497 "/usr/include/pthread.h" typedef struct { struct { __jmp_buf __cancel_jmp_buf ; int __mask_was_saved ; } __cancel_jmp_buf [ 1 ] ; void * __pad [ 4 ] ; } __pthread_unwind_buf_t __attribute__ ( ( __aligned__ ) ) ; # 507 "/usr/include/pthread.h" # 513 "/usr/include/pthread.h" struct __pthread_cleanup_frame { void ( * __cancel_routine ) ( void * ) ; void * __cancel_arg ; int __do_it ; int __cancel_type ; } ; # 637 "/usr/include/pthread.h" # 654 "/usr/include/pthread.h" extern void __pthread_register_cancel ( __pthread_unwind_buf_t * __buf ) ; # 658 "/usr/include/pthread.h" # 666 "/usr/include/pthread.h" extern void __pthread_unregister_cancel ( __pthread_unwind_buf_t * __buf ) ; # 706 "/usr/include/pthread.h" extern void __pthread_unwind_next ( __pthread_unwind_buf_t * __buf ) __attribute__ ( ( __noreturn__ ) ) # 710 "/usr/include/pthread.h" __attribute__ ( ( __weak__ ) ) # 712 "/usr/include/pthread.h" ; # 715 "/usr/include/pthread.h" struct __jmp_buf_tag ; extern int __sigsetjmp ( struct __jmp_buf_tag * __env , int __savemask ) ; # 720 "/usr/include/pthread.h" # 722 "/usr/include/pthread.h" extern int pthread_mutex_init ( pthread_mutex_t * __mutex , const pthread_mutexattr_t * __mutexattr ) ; # 727 "/usr/include/pthread.h" extern int pthread_mutex_destroy ( pthread_mutex_t * __mutex ) ; # 731 "/usr/include/pthread.h" extern int pthread_mutex_trylock ( pthread_mutex_t * __mutex ) ; # 735 "/usr/include/pthread.h" extern int pthread_mutex_lock ( pthread_mutex_t * __mutex ) ; # 740 "/usr/include/pthread.h" extern int pthread_mutex_timedlock ( pthread_mutex_t * __restrict __mutex , const struct timespec * __restrict __abstime ) ; # 746 "/usr/include/pthread.h" extern int pthread_mutex_unlock ( pthread_mutex_t * __mutex ) ; # 768 "/usr/include/pthread.h" extern int pthread_mutex_consistent_np ( pthread_mutex_t * __mutex ) ; # 778 "/usr/include/pthread.h" # 781 "/usr/include/pthread.h" extern int pthread_mutexattr_init ( pthread_mutexattr_t * __attr ) ; # 785 "/usr/include/pthread.h" extern int pthread_mutexattr_destroy ( pthread_mutexattr_t * __attr ) ; # 789 "/usr/include/pthread.h" extern int pthread_mutexattr_getpshared ( const pthread_mutexattr_t * __restrict __attr , int * __restrict __pshared ) ; # 795 "/usr/include/pthread.h" extern int pthread_mutexattr_setpshared ( pthread_mutexattr_t * __attr , int __pshared ) ; # 837 "/usr/include/pthread.h" extern int pthread_mutexattr_getrobust ( const pthread_mutexattr_t * __attr , int * __robustness ) ; # 847 "/usr/include/pthread.h" extern int pthread_mutexattr_setrobust ( pthread_mutexattr_t * __attr , int __robustness ) ; # 860 "/usr/include/pthread.h" # 863 "/usr/include/pthread.h" extern int pthread_rwlock_init ( pthread_rwlock_t * __restrict __rwlock , const pthread_rwlockattr_t * __restrict __attr ) ; # 868 "/usr/include/pthread.h" extern int pthread_rwlock_destroy ( pthread_rwlock_t * __rwlock ) ; # 872 "/usr/include/pthread.h" extern int pthread_rwlock_rdlock ( pthread_rwlock_t * __rwlock ) ; # 876 "/usr/include/pthread.h" extern int pthread_rwlock_tryrdlock ( pthread_rwlock_t * __rwlock ) ; # 881 "/usr/include/pthread.h" extern int pthread_rwlock_timedrdlock ( pthread_rwlock_t * __restrict __rwlock , const struct timespec * __restrict __abstime ) ; # 887 "/usr/include/pthread.h" extern int pthread_rwlock_wrlock ( pthread_rwlock_t * __rwlock ) ; # 891 "/usr/include/pthread.h" extern int pthread_rwlock_trywrlock ( pthread_rwlock_t * __rwlock ) ; # 896 "/usr/include/pthread.h" extern int pthread_rwlock_timedwrlock ( pthread_rwlock_t * __restrict __rwlock , const struct timespec * __restrict __abstime ) ; # 902 "/usr/include/pthread.h" extern int pthread_rwlock_unlock ( pthread_rwlock_t * __rwlock ) ; # 907 "/usr/include/pthread.h" # 909 "/usr/include/pthread.h" extern int pthread_rwlockattr_init ( pthread_rwlockattr_t * __attr ) ; # 913 "/usr/include/pthread.h" extern int pthread_rwlockattr_destroy ( pthread_rwlockattr_t * __attr ) ; # 917 "/usr/include/pthread.h" extern int pthread_rwlockattr_getpshared ( const pthread_rwlockattr_t * __restrict __attr , int * __restrict __pshared ) ; # 923 "/usr/include/pthread.h" extern int pthread_rwlockattr_setpshared ( pthread_rwlockattr_t * __attr , int __pshared ) ; # 928 "/usr/include/pthread.h" extern int pthread_rwlockattr_getkind_np ( const pthread_rwlockattr_t * __restrict __attr , int * __restrict __pref ) ; # 934 "/usr/include/pthread.h" extern int pthread_rwlockattr_setkind_np ( pthread_rwlockattr_t * __attr , int __pref ) ; # 940 "/usr/include/pthread.h" # 943 "/usr/include/pthread.h" extern int pthread_cond_init ( pthread_cond_t * __restrict __cond , const pthread_condattr_t * __restrict __cond_attr ) ; # 948 "/usr/include/pthread.h" extern int pthread_cond_destroy ( pthread_cond_t * __cond ) ; # 952 "/usr/include/pthread.h" extern int pthread_cond_signal ( pthread_cond_t * __cond ) ; # 956 "/usr/include/pthread.h" extern int pthread_cond_broadcast ( pthread_cond_t * __cond ) ; # 964 "/usr/include/pthread.h" extern int pthread_cond_wait ( pthread_cond_t * __restrict __cond , pthread_mutex_t * __restrict __mutex ) ; # 975 "/usr/include/pthread.h" extern int pthread_cond_timedwait ( pthread_cond_t * __restrict __cond , pthread_mutex_t * __restrict __mutex , const struct timespec * __restrict __abstime ) ; # 981 "/usr/include/pthread.h" # 983 "/usr/include/pthread.h" extern int pthread_condattr_init ( pthread_condattr_t * __attr ) ; # 987 "/usr/include/pthread.h" extern int pthread_condattr_destroy ( pthread_condattr_t * __attr ) ; # 991 "/usr/include/pthread.h" extern int pthread_condattr_getpshared ( const pthread_condattr_t * __restrict __attr , int * __restrict __pshared ) ; # 997 "/usr/include/pthread.h" extern int pthread_condattr_setpshared ( pthread_condattr_t * __attr , int __pshared ) ; # 1002 "/usr/include/pthread.h" extern int pthread_condattr_getclock ( const pthread_condattr_t * __restrict __attr , __clockid_t * __restrict __clock_id ) ; # 1008 "/usr/include/pthread.h" extern int pthread_condattr_setclock ( pthread_condattr_t * __attr , __clockid_t __clock_id ) ; # 1016 "/usr/include/pthread.h" # 1019 "/usr/include/pthread.h" extern int pthread_spin_init ( pthread_spinlock_t * __lock , int __pshared ) ; # 1023 "/usr/include/pthread.h" extern int pthread_spin_destroy ( pthread_spinlock_t * __lock ) ; # 1027 "/usr/include/pthread.h" extern int pthread_spin_lock ( pthread_spinlock_t * __lock ) ; # 1031 "/usr/include/pthread.h" extern int pthread_spin_trylock ( pthread_spinlock_t * __lock ) ; # 1035 "/usr/include/pthread.h" extern int pthread_spin_unlock ( pthread_spinlock_t * __lock ) ; # 1040 "/usr/include/pthread.h" # 1043 "/usr/include/pthread.h" extern int pthread_barrier_init ( pthread_barrier_t * __restrict __barrier , const pthread_barrierattr_t * __restrict __attr , unsigned int __count ) ; # 1049 "/usr/include/pthread.h" extern int pthread_barrier_destroy ( pthread_barrier_t * __barrier ) ; # 1053 "/usr/include/pthread.h" extern int pthread_barrier_wait ( pthread_barrier_t * __barrier ) ; # 1058 "/usr/include/pthread.h" extern int pthread_barrierattr_init ( pthread_barrierattr_t * __attr ) ; # 1062 "/usr/include/pthread.h" extern int pthread_barrierattr_destroy ( pthread_barrierattr_t * __attr ) ; # 1066 "/usr/include/pthread.h" extern int pthread_barrierattr_getpshared ( const pthread_barrierattr_t * __restrict __attr , int * __restrict __pshared ) ; # 1072 "/usr/include/pthread.h" extern int pthread_barrierattr_setpshared ( pthread_barrierattr_t * __attr , int __pshared ) ; # 1079 "/usr/include/pthread.h" # 1086 "/usr/include/pthread.h" extern int pthread_key_create ( pthread_key_t * __key , void ( * __destr_function ) ( void * ) ) ; # 1091 "/usr/include/pthread.h" extern int pthread_key_delete ( pthread_key_t __key ) ; # 1094 "/usr/include/pthread.h" extern void * pthread_getspecific ( pthread_key_t __key ) ; # 1097 "/usr/include/pthread.h" extern int pthread_setspecific ( pthread_key_t __key , const void * __pointer ) ; # 1103 "/usr/include/pthread.h" extern int pthread_getcpuclockid ( pthread_t __thread_id , __clockid_t * __clock_id ) ; # 1119 "/usr/include/pthread.h" # 1121 "/usr/include/pthread.h" extern int pthread_atfork ( void ( * __prepare ) ( void ) , void ( * __parent ) ( void ) , void ( * __child ) ( void ) ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/setjmp.h" # 17 "/usr/include/setjmp.h" # 21 "/usr/include/setjmp.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/setjmp.h" # 1 "/usr/include/bits/setjmp.h" # 17 "/usr/include/bits/setjmp.h" # 19 "/usr/include/bits/setjmp.h" # 1 "/usr/include/bits/wordsize.h" # 28 "/usr/include/bits/setjmp.h" # 32 "/usr/include/bits/setjmp.h" typedef long int __jmp_buf [ 8 ] ; # 31 "/usr/include/setjmp.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 32 "/usr/include/setjmp.h" # 34 "/usr/include/setjmp.h" struct __jmp_buf_tag { # 40 "/usr/include/setjmp.h" __jmp_buf __jmpbuf ; int __mask_was_saved ; __sigset_t __saved_mask ; } ; # 49 "/usr/include/setjmp.h" typedef struct __jmp_buf_tag jmp_buf [ 1 ] ; # 52 "/usr/include/setjmp.h" extern int setjmp ( jmp_buf __env ) ; # 59 "/usr/include/setjmp.h" extern int __sigsetjmp ( struct __jmp_buf_tag __env [ 1 ] , int __savemask ) ; # 64 "/usr/include/setjmp.h" extern int _setjmp ( struct __jmp_buf_tag __env [ 1 ] ) ; # 68 "/usr/include/setjmp.h" # 81 "/usr/include/setjmp.h" extern void longjmp ( struct __jmp_buf_tag __env [ 1 ] , int __val ) __attribute__ ( ( __noreturn__ ) ) ; # 90 "/usr/include/setjmp.h" extern void _longjmp ( struct __jmp_buf_tag __env [ 1 ] , int __val ) __attribute__ ( ( __noreturn__ ) ) ; # 99 "/usr/include/setjmp.h" typedef struct __jmp_buf_tag sigjmp_buf [ 1 ] ; # 103 "/usr/include/setjmp.h" # 109 "/usr/include/setjmp.h" extern void siglongjmp ( sigjmp_buf __env , int __val ) __attribute__ ( ( __noreturn__ ) ) ; # 115 "/usr/include/setjmp.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/utsname.h" # 17 "/usr/include/sys/utsname.h" # 21 "/usr/include/sys/utsname.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/sys/utsname.h" # 1 "/usr/include/bits/utsname.h" # 17 "/usr/include/bits/utsname.h" # 23 "/usr/include/bits/utsname.h" # 28 "/usr/include/bits/utsname.h" # 31 "/usr/include/sys/utsname.h" # 48 "/usr/include/sys/utsname.h" struct utsname { char sysname [ 65 ] ; # 54 "/usr/include/sys/utsname.h" char nodename [ 65 ] ; # 57 "/usr/include/sys/utsname.h" char release [ 65 ] ; char version [ 65 ] ; # 62 "/usr/include/sys/utsname.h" char machine [ 65 ] ; # 66 "/usr/include/sys/utsname.h" # 70 "/usr/include/sys/utsname.h" char __domainname [ 65 ] ; # 73 "/usr/include/sys/utsname.h" } ; # 76 "/usr/include/sys/utsname.h" # 81 "/usr/include/sys/utsname.h" extern int uname ( struct utsname * __name ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file machine/endian.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 16 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 2 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 5 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 10 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/syslimits.h" # 4 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/syslimits.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 16 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 2 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 5 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 1 "/usr/include/limits.h" # 18 "/usr/include/limits.h" # 22 "/usr/include/limits.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 28 "/usr/include/limits.h" # 32 "/usr/include/limits.h" # 37 "/usr/include/limits.h" # 42 "/usr/include/limits.h" # 1 "/usr/include/bits/wordsize.h" # 47 "/usr/include/limits.h" # 49 "/usr/include/limits.h" # 52 "/usr/include/limits.h" # 54 "/usr/include/limits.h" # 57 "/usr/include/limits.h" # 61 "/usr/include/limits.h" # 64 "/usr/include/limits.h" # 73 "/usr/include/limits.h" # 77 "/usr/include/limits.h" # 80 "/usr/include/limits.h" # 84 "/usr/include/limits.h" # 87 "/usr/include/limits.h" # 95 "/usr/include/limits.h" # 104 "/usr/include/limits.h" # 108 "/usr/include/limits.h" # 118 "/usr/include/limits.h" # 122 "/usr/include/limits.h" # 130 "/usr/include/limits.h" # 144 "/usr/include/limits.h" # 1 "/usr/include/bits/posix1_lim.h" # 17 "/usr/include/bits/posix1_lim.h" # 23 "/usr/include/bits/posix1_lim.h" # 29 "/usr/include/bits/posix1_lim.h" # 31 "/usr/include/bits/posix1_lim.h" # 34 "/usr/include/bits/posix1_lim.h" # 37 "/usr/include/bits/posix1_lim.h" # 40 "/usr/include/bits/posix1_lim.h" # 47 "/usr/include/bits/posix1_lim.h" # 51 "/usr/include/bits/posix1_lim.h" # 54 "/usr/include/bits/posix1_lim.h" # 57 "/usr/include/bits/posix1_lim.h" # 60 "/usr/include/bits/posix1_lim.h" # 64 "/usr/include/bits/posix1_lim.h" # 67 "/usr/include/bits/posix1_lim.h" # 70 "/usr/include/bits/posix1_lim.h" # 73 "/usr/include/bits/posix1_lim.h" # 76 "/usr/include/bits/posix1_lim.h" # 83 "/usr/include/bits/posix1_lim.h" # 96 "/usr/include/bits/posix1_lim.h" # 99 "/usr/include/bits/posix1_lim.h" # 103 "/usr/include/bits/posix1_lim.h" # 106 "/usr/include/bits/posix1_lim.h" # 109 "/usr/include/bits/posix1_lim.h" # 112 "/usr/include/bits/posix1_lim.h" # 115 "/usr/include/bits/posix1_lim.h" # 118 "/usr/include/bits/posix1_lim.h" # 121 "/usr/include/bits/posix1_lim.h" # 124 "/usr/include/bits/posix1_lim.h" # 128 "/usr/include/bits/posix1_lim.h" # 131 "/usr/include/bits/posix1_lim.h" # 134 "/usr/include/bits/posix1_lim.h" # 137 "/usr/include/bits/posix1_lim.h" # 152 "/usr/include/bits/posix1_lim.h" # 156 "/usr/include/bits/posix1_lim.h" # 1 "/usr/include/bits/local_lim.h" # 18 "/usr/include/bits/local_lim.h" # 24 "/usr/include/bits/local_lim.h" # 38 "/usr/include/bits/local_lim.h" # 1 "/usr/include/linux/limits.h" # 40 "/usr/include/bits/local_lim.h" # 41 "/usr/include/bits/local_lim.h" # 46 "/usr/include/bits/local_lim.h" # 51 "/usr/include/bits/local_lim.h" # 56 "/usr/include/bits/local_lim.h" # 62 "/usr/include/bits/local_lim.h" # 64 "/usr/include/bits/local_lim.h" # 67 "/usr/include/bits/local_lim.h" # 69 "/usr/include/bits/local_lim.h" # 72 "/usr/include/bits/local_lim.h" # 74 "/usr/include/bits/local_lim.h" # 78 "/usr/include/bits/local_lim.h" # 81 "/usr/include/bits/local_lim.h" # 84 "/usr/include/bits/local_lim.h" # 87 "/usr/include/bits/local_lim.h" # 90 "/usr/include/bits/local_lim.h" # 93 "/usr/include/bits/local_lim.h" # 96 "/usr/include/bits/local_lim.h" # 99 "/usr/include/bits/local_lim.h" # 158 "/usr/include/bits/posix1_lim.h" # 166 "/usr/include/bits/posix1_lim.h" # 146 "/usr/include/limits.h" # 1 "/usr/include/bits/posix2_lim.h" # 17 "/usr/include/bits/posix2_lim.h" # 21 "/usr/include/bits/posix2_lim.h" # 27 "/usr/include/bits/posix2_lim.h" # 30 "/usr/include/bits/posix2_lim.h" # 33 "/usr/include/bits/posix2_lim.h" # 36 "/usr/include/bits/posix2_lim.h" # 40 "/usr/include/bits/posix2_lim.h" # 44 "/usr/include/bits/posix2_lim.h" # 47 "/usr/include/bits/posix2_lim.h" # 51 "/usr/include/bits/posix2_lim.h" # 55 "/usr/include/bits/posix2_lim.h" # 61 "/usr/include/bits/posix2_lim.h" # 88 "/usr/include/bits/posix2_lim.h" # 150 "/usr/include/limits.h" # 123 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 8 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/syslimits.h" # 12 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 16 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 20 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 25 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 31 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 62 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 70 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 76 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 81 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 87 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 92 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 117 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/fcntl.h" # 18 "/usr/include/fcntl.h" # 22 "/usr/include/fcntl.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 28 "/usr/include/fcntl.h" # 29 "/usr/include/fcntl.h" # 33 "/usr/include/fcntl.h" # 1 "/usr/include/bits/fcntl.h" # 18 "/usr/include/bits/fcntl.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 25 "/usr/include/bits/fcntl.h" # 1 "/usr/include/bits/wordsize.h" # 26 "/usr/include/bits/fcntl.h" # 32 "/usr/include/bits/fcntl.h" # 58 "/usr/include/bits/fcntl.h" # 72 "/usr/include/bits/fcntl.h" # 82 "/usr/include/bits/fcntl.h" # 121 "/usr/include/bits/fcntl.h" # 124 "/usr/include/bits/fcntl.h" # 129 "/usr/include/bits/fcntl.h" # 134 "/usr/include/bits/fcntl.h" # 160 "/usr/include/bits/fcntl.h" struct flock { short int l_type ; short int l_whence ; # 165 "/usr/include/bits/fcntl.h" __off_t l_start ; __off_t l_len ; # 171 "/usr/include/bits/fcntl.h" __pid_t l_pid ; } ; # 203 "/usr/include/bits/fcntl.h" # 212 "/usr/include/bits/fcntl.h" # 35 "/usr/include/fcntl.h" # 36 "/usr/include/fcntl.h" # 44 "/usr/include/fcntl.h" # 52 "/usr/include/fcntl.h" # 77 "/usr/include/fcntl.h" extern int fcntl ( int __fd , int __cmd , ... ) ; # 85 "/usr/include/fcntl.h" # 87 "/usr/include/fcntl.h" extern int open ( const char * __file , int __oflag , ... ) ; # 109 "/usr/include/fcntl.h" # 111 "/usr/include/fcntl.h" extern int openat ( int __fd , const char * __file , int __oflag , ... ) ; # 122 "/usr/include/fcntl.h" extern int openat64 ( int __fd , const char * __file , int __oflag , ... ) ; # 130 "/usr/include/fcntl.h" # 132 "/usr/include/fcntl.h" extern int creat ( const char * __file , __mode_t __mode ) ; # 149 "/usr/include/fcntl.h" # 153 "/usr/include/fcntl.h" # 161 "/usr/include/fcntl.h" extern int lockf ( int __fd , int __cmd , __off_t __len ) ; # 176 "/usr/include/fcntl.h" # 178 "/usr/include/fcntl.h" extern int posix_fadvise ( int __fd , __off_t __offset , __off_t __len , int __advise ) ; # 198 "/usr/include/fcntl.h" # 200 "/usr/include/fcntl.h" extern int posix_fallocate ( int __fd , __off_t __offset , __off_t __len ) ; # 216 "/usr/include/fcntl.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/string.h" # 17 "/usr/include/string.h" # 21 "/usr/include/string.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/string.h" # 30 "/usr/include/string.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 34 "/usr/include/string.h" # 35 "/usr/include/string.h" # 42 "/usr/include/string.h" extern void * memcpy ( void * __restrict __dest , const void * __restrict __src , size_t __n ) ; # 47 "/usr/include/string.h" extern void * memmove ( void * __dest , const void * __src , size_t __n ) ; # 54 "/usr/include/string.h" # 56 "/usr/include/string.h" extern void * memccpy ( void * __restrict __dest , const void * __restrict __src , int __c , size_t __n ) ; # 63 "/usr/include/string.h" extern void * memset ( void * __s , int __c , size_t __n ) ; # 66 "/usr/include/string.h" extern int memcmp ( const void * __s1 , const void * __s2 , size_t __n ) ; # 70 "/usr/include/string.h" # 94 "/usr/include/string.h" extern void * memchr ( const void * __s , int __c , size_t __n ) ; # 126 "/usr/include/string.h" extern char * strcpy ( char * __restrict __dest , const char * __restrict __src ) ; extern char * strncpy ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; # 134 "/usr/include/string.h" extern char * strcat ( char * __restrict __dest , const char * __restrict __src ) ; extern char * strncat ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; # 141 "/usr/include/string.h" extern int strcmp ( const char * __s1 , const char * __s2 ) ; extern int strncmp ( const char * __s1 , const char * __s2 , size_t __n ) ; # 148 "/usr/include/string.h" extern int strcoll ( const char * __s1 , const char * __s2 ) ; extern size_t strxfrm ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; # 160 "/usr/include/string.h" # 1 "/usr/include/xlocale.h" # 19 "/usr/include/xlocale.h" # 27 "/usr/include/xlocale.h" typedef struct __locale_struct { struct locale_data * __locales [ 13 ] ; # 33 "/usr/include/xlocale.h" const unsigned short int * __ctype_b ; const int * __ctype_tolower ; const int * __ctype_toupper ; # 38 "/usr/include/xlocale.h" const char * __names [ 13 ] ; } * __locale_t ; # 42 "/usr/include/xlocale.h" typedef __locale_t locale_t ; # 162 "/usr/include/string.h" # 163 "/usr/include/string.h" extern int strcoll_l ( const char * __s1 , const char * __s2 , __locale_t __l ) ; extern size_t strxfrm_l ( char * __dest , const char * __src , size_t __n , __locale_t __l ) ; # 172 "/usr/include/string.h" extern char * strdup ( const char * __s ) ; # 179 "/usr/include/string.h" # 181 "/usr/include/string.h" extern char * strndup ( const char * __string , size_t __n ) ; # 209 "/usr/include/string.h" # 233 "/usr/include/string.h" extern char * strchr ( const char * __s , int __c ) ; # 236 "/usr/include/string.h" # 260 "/usr/include/string.h" extern char * strrchr ( const char * __s , int __c ) ; # 281 "/usr/include/string.h" extern size_t strcspn ( const char * __s , const char * __reject ) ; # 285 "/usr/include/string.h" extern size_t strspn ( const char * __s , const char * __accept ) ; # 312 "/usr/include/string.h" extern char * strpbrk ( const char * __s , const char * __accept ) ; # 315 "/usr/include/string.h" # 340 "/usr/include/string.h" extern char * strstr ( const char * __haystack , const char * __needle ) ; # 345 "/usr/include/string.h" extern char * strtok ( char * __restrict __s , const char * __restrict __delim ) ; # 351 "/usr/include/string.h" extern char * __strtok_r ( char * __restrict __s , const char * __restrict __delim , char * * __restrict __save_ptr ) ; # 357 "/usr/include/string.h" extern char * strtok_r ( char * __restrict __s , const char * __restrict __delim , char * * __restrict __save_ptr ) ; # 396 "/usr/include/string.h" extern size_t strlen ( const char * __s ) ; # 403 "/usr/include/string.h" extern size_t strnlen ( const char * __string , size_t __maxlen ) ; # 410 "/usr/include/string.h" extern char * strerror ( int __errnum ) ; # 420 "/usr/include/string.h" # 423 "/usr/include/string.h" # 429 "/usr/include/string.h" extern int __xpg_strerror_r ( int __errnum , char * __buf , size_t __buflen ) ; # 442 "/usr/include/string.h" extern char * strerror_l ( int __errnum , __locale_t __l ) ; # 448 "/usr/include/string.h" extern void __bzero ( void * __s , size_t __n ) ; # 452 "/usr/include/string.h" extern void bcopy ( const void * __src , void * __dest , size_t __n ) ; # 456 "/usr/include/string.h" extern void bzero ( void * __s , size_t __n ) ; # 459 "/usr/include/string.h" extern int bcmp ( const void * __s1 , const void * __s2 , size_t __n ) ; # 463 "/usr/include/string.h" # 487 "/usr/include/string.h" extern char * index ( const char * __s , int __c ) ; # 491 "/usr/include/string.h" # 515 "/usr/include/string.h" extern char * rindex ( const char * __s , int __c ) ; # 520 "/usr/include/string.h" extern int ffs ( int __i ) __attribute__ ( ( __const__ ) ) ; # 524 "/usr/include/string.h" # 533 "/usr/include/string.h" extern int strcasecmp ( const char * __s1 , const char * __s2 ) ; # 537 "/usr/include/string.h" extern int strncasecmp ( const char * __s1 , const char * __s2 , size_t __n ) ; # 556 "/usr/include/string.h" extern char * strsep ( char * * __restrict __stringp , const char * __restrict __delim ) ; # 563 "/usr/include/string.h" extern char * strsignal ( int __sig ) ; # 566 "/usr/include/string.h" extern char * __stpcpy ( char * __restrict __dest , const char * __restrict __src ) ; extern char * stpcpy ( char * __restrict __dest , const char * __restrict __src ) ; # 573 "/usr/include/string.h" extern char * __stpncpy ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; extern char * stpncpy ( char * __restrict __dest , const char * __restrict __src , size_t __n ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/times.h" # 17 "/usr/include/sys/times.h" # 21 "/usr/include/sys/times.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/sys/times.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 57 "/usr/include/time.h" # 59 "/usr/include/time.h" typedef __clock_t clock_t ; # 30 "/usr/include/sys/times.h" # 34 "/usr/include/sys/times.h" struct tms { clock_t tms_utime ; clock_t tms_stime ; # 40 "/usr/include/sys/times.h" clock_t tms_cutime ; clock_t tms_cstime ; } ; # 48 "/usr/include/sys/times.h" extern clock_t times ( struct tms * __buffer ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file io.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/stdint.h" # 17 "/usr/include/stdint.h" # 21 "/usr/include/stdint.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/stdint.h" # 1 "/usr/include/bits/wchar.h" # 18 "/usr/include/bits/wchar.h" # 28 "/usr/include/stdint.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/stdint.h" # 30 "/usr/include/stdint.h" # 32 "/usr/include/stdint.h" # 34 "/usr/include/stdint.h" # 37 "/usr/include/stdint.h" typedef signed char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 41 "/usr/include/stdint.h" typedef long int int64_t ; # 48 "/usr/include/stdint.h" typedef unsigned char uint8_t ; typedef unsigned short int uint16_t ; # 52 "/usr/include/stdint.h" typedef unsigned int uint32_t ; # 56 "/usr/include/stdint.h" typedef unsigned long int uint64_t ; # 63 "/usr/include/stdint.h" # 65 "/usr/include/stdint.h" typedef signed char int_least8_t ; typedef short int int_least16_t ; typedef int int_least32_t ; # 70 "/usr/include/stdint.h" typedef long int int_least64_t ; # 76 "/usr/include/stdint.h" typedef unsigned char uint_least8_t ; typedef unsigned short int uint_least16_t ; typedef unsigned int uint_least32_t ; # 81 "/usr/include/stdint.h" typedef unsigned long int uint_least64_t ; # 88 "/usr/include/stdint.h" # 90 "/usr/include/stdint.h" typedef signed char int_fast8_t ; # 93 "/usr/include/stdint.h" typedef long int int_fast16_t ; typedef long int int_fast32_t ; typedef long int int_fast64_t ; # 103 "/usr/include/stdint.h" typedef unsigned char uint_fast8_t ; # 106 "/usr/include/stdint.h" typedef unsigned long int uint_fast16_t ; typedef unsigned long int uint_fast32_t ; typedef unsigned long int uint_fast64_t ; # 117 "/usr/include/stdint.h" # 120 "/usr/include/stdint.h" typedef long int intptr_t ; # 123 "/usr/include/stdint.h" typedef unsigned long int uintptr_t ; # 133 "/usr/include/stdint.h" # 135 "/usr/include/stdint.h" typedef long int intmax_t ; typedef unsigned long int uintmax_t ; # 146 "/usr/include/stdint.h" # 157 "/usr/include/stdint.h" # 159 "/usr/include/stdint.h" # 164 "/usr/include/stdint.h" # 170 "/usr/include/stdint.h" # 177 "/usr/include/stdint.h" # 182 "/usr/include/stdint.h" # 188 "/usr/include/stdint.h" # 195 "/usr/include/stdint.h" # 205 "/usr/include/stdint.h" # 216 "/usr/include/stdint.h" # 228 "/usr/include/stdint.h" # 240 "/usr/include/stdint.h" # 242 "/usr/include/stdint.h" # 245 "/usr/include/stdint.h" # 249 "/usr/include/stdint.h" # 251 "/usr/include/stdint.h" # 260 "/usr/include/stdint.h" # 264 "/usr/include/stdint.h" # 271 "/usr/include/stdint.h" # 273 "/usr/include/stdint.h" # 278 "/usr/include/stdint.h" # 286 "/usr/include/stdint.h" # 289 "/usr/include/stdint.h" # 299 "/usr/include/stdint.h" # 309 "/usr/include/stdint.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/pwd.h" # 17 "/usr/include/pwd.h" # 21 "/usr/include/pwd.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/pwd.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 31 "/usr/include/pwd.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 34 "/usr/include/pwd.h" # 37 "/usr/include/pwd.h" # 39 "/usr/include/pwd.h" typedef __gid_t gid_t ; # 44 "/usr/include/pwd.h" typedef __uid_t uid_t ; # 49 "/usr/include/pwd.h" struct passwd { char * pw_name ; char * pw_passwd ; __uid_t pw_uid ; __gid_t pw_gid ; char * pw_gecos ; char * pw_dir ; char * pw_shell ; } ; # 1 "/usr/include/stdio.h" # 18 "/usr/include/stdio.h" # 22 "/usr/include/stdio.h" # 44 "/usr/include/stdio.h" struct _IO_FILE ; # 48 "/usr/include/stdio.h" typedef struct _IO_FILE FILE ; # 65 "/usr/include/pwd.h" # 72 "/usr/include/pwd.h" extern void setpwent ( void ) ; # 78 "/usr/include/pwd.h" extern void endpwent ( void ) ; # 84 "/usr/include/pwd.h" extern struct passwd * getpwent ( void ) ; # 94 "/usr/include/pwd.h" extern struct passwd * fgetpwent ( FILE * __stream ) ; # 102 "/usr/include/pwd.h" extern int putpwent ( const struct passwd * __restrict __p , FILE * __restrict __f ) ; # 110 "/usr/include/pwd.h" extern struct passwd * getpwuid ( __uid_t __uid ) ; # 116 "/usr/include/pwd.h" extern struct passwd * getpwnam ( const char * __name ) ; # 123 "/usr/include/pwd.h" # 133 "/usr/include/pwd.h" # 139 "/usr/include/pwd.h" extern int getpwent_r ( struct passwd * __restrict __resultbuf , char * __restrict __buffer , size_t __buflen , struct passwd * * __restrict __result ) ; # 145 "/usr/include/pwd.h" extern int getpwuid_r ( __uid_t __uid , struct passwd * __restrict __resultbuf , char * __restrict __buffer , size_t __buflen , struct passwd * * __restrict __result ) ; # 150 "/usr/include/pwd.h" extern int getpwnam_r ( const char * __restrict __name , struct passwd * __restrict __resultbuf , char * __restrict __buffer , size_t __buflen , struct passwd * * __restrict __result ) ; # 163 "/usr/include/pwd.h" extern int fgetpwent_r ( FILE * __restrict __stream , struct passwd * __restrict __resultbuf , char * __restrict __buffer , size_t __buflen , struct passwd * * __restrict __result ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 41 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 18 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 25 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 29 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 34 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 38 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 52 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 72 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 80 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 92 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 103 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 112 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 120 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 146 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 157 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 59 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/param.h" # 17 "/usr/include/sys/param.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 16 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 2 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 5 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 10 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/syslimits.h" # 4 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/syslimits.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 16 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 2 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 5 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 1 "/usr/include/limits.h" # 18 "/usr/include/limits.h" # 22 "/usr/include/limits.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 28 "/usr/include/limits.h" # 32 "/usr/include/limits.h" # 37 "/usr/include/limits.h" # 42 "/usr/include/limits.h" # 1 "/usr/include/bits/wordsize.h" # 47 "/usr/include/limits.h" # 49 "/usr/include/limits.h" # 52 "/usr/include/limits.h" # 54 "/usr/include/limits.h" # 57 "/usr/include/limits.h" # 61 "/usr/include/limits.h" # 64 "/usr/include/limits.h" # 73 "/usr/include/limits.h" # 77 "/usr/include/limits.h" # 80 "/usr/include/limits.h" # 84 "/usr/include/limits.h" # 87 "/usr/include/limits.h" # 95 "/usr/include/limits.h" # 104 "/usr/include/limits.h" # 108 "/usr/include/limits.h" # 118 "/usr/include/limits.h" # 122 "/usr/include/limits.h" # 130 "/usr/include/limits.h" # 144 "/usr/include/limits.h" # 1 "/usr/include/bits/posix1_lim.h" # 17 "/usr/include/bits/posix1_lim.h" # 23 "/usr/include/bits/posix1_lim.h" # 29 "/usr/include/bits/posix1_lim.h" # 31 "/usr/include/bits/posix1_lim.h" # 34 "/usr/include/bits/posix1_lim.h" # 37 "/usr/include/bits/posix1_lim.h" # 40 "/usr/include/bits/posix1_lim.h" # 47 "/usr/include/bits/posix1_lim.h" # 51 "/usr/include/bits/posix1_lim.h" # 54 "/usr/include/bits/posix1_lim.h" # 57 "/usr/include/bits/posix1_lim.h" # 60 "/usr/include/bits/posix1_lim.h" # 64 "/usr/include/bits/posix1_lim.h" # 67 "/usr/include/bits/posix1_lim.h" # 70 "/usr/include/bits/posix1_lim.h" # 73 "/usr/include/bits/posix1_lim.h" # 76 "/usr/include/bits/posix1_lim.h" # 83 "/usr/include/bits/posix1_lim.h" # 96 "/usr/include/bits/posix1_lim.h" # 99 "/usr/include/bits/posix1_lim.h" # 103 "/usr/include/bits/posix1_lim.h" # 106 "/usr/include/bits/posix1_lim.h" # 109 "/usr/include/bits/posix1_lim.h" # 112 "/usr/include/bits/posix1_lim.h" # 115 "/usr/include/bits/posix1_lim.h" # 118 "/usr/include/bits/posix1_lim.h" # 121 "/usr/include/bits/posix1_lim.h" # 124 "/usr/include/bits/posix1_lim.h" # 128 "/usr/include/bits/posix1_lim.h" # 131 "/usr/include/bits/posix1_lim.h" # 134 "/usr/include/bits/posix1_lim.h" # 137 "/usr/include/bits/posix1_lim.h" # 152 "/usr/include/bits/posix1_lim.h" # 156 "/usr/include/bits/posix1_lim.h" # 1 "/usr/include/bits/local_lim.h" # 18 "/usr/include/bits/local_lim.h" # 24 "/usr/include/bits/local_lim.h" # 38 "/usr/include/bits/local_lim.h" # 1 "/usr/include/linux/limits.h" # 40 "/usr/include/bits/local_lim.h" # 41 "/usr/include/bits/local_lim.h" # 46 "/usr/include/bits/local_lim.h" # 51 "/usr/include/bits/local_lim.h" # 56 "/usr/include/bits/local_lim.h" # 62 "/usr/include/bits/local_lim.h" # 64 "/usr/include/bits/local_lim.h" # 67 "/usr/include/bits/local_lim.h" # 69 "/usr/include/bits/local_lim.h" # 72 "/usr/include/bits/local_lim.h" # 74 "/usr/include/bits/local_lim.h" # 78 "/usr/include/bits/local_lim.h" # 81 "/usr/include/bits/local_lim.h" # 84 "/usr/include/bits/local_lim.h" # 87 "/usr/include/bits/local_lim.h" # 90 "/usr/include/bits/local_lim.h" # 93 "/usr/include/bits/local_lim.h" # 96 "/usr/include/bits/local_lim.h" # 99 "/usr/include/bits/local_lim.h" # 158 "/usr/include/bits/posix1_lim.h" # 166 "/usr/include/bits/posix1_lim.h" # 146 "/usr/include/limits.h" # 1 "/usr/include/bits/posix2_lim.h" # 17 "/usr/include/bits/posix2_lim.h" # 21 "/usr/include/bits/posix2_lim.h" # 27 "/usr/include/bits/posix2_lim.h" # 30 "/usr/include/bits/posix2_lim.h" # 33 "/usr/include/bits/posix2_lim.h" # 36 "/usr/include/bits/posix2_lim.h" # 40 "/usr/include/bits/posix2_lim.h" # 44 "/usr/include/bits/posix2_lim.h" # 47 "/usr/include/bits/posix2_lim.h" # 51 "/usr/include/bits/posix2_lim.h" # 55 "/usr/include/bits/posix2_lim.h" # 61 "/usr/include/bits/posix2_lim.h" # 88 "/usr/include/bits/posix2_lim.h" # 150 "/usr/include/limits.h" # 123 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 8 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/syslimits.h" # 12 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 16 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 20 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 25 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 31 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 62 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 70 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 76 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 81 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 87 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 92 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 117 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed/limits.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/limits.h" # 27 "/usr/include/sys/param.h" # 1 "/usr/include/linux/limits.h" # 28 "/usr/include/sys/param.h" # 1 "/usr/include/linux/param.h" # 1 "/usr/include/asm/param.h" # 1 "/usr/include/asm-generic/param.h" # 2 "/usr/include/asm/param.h" # 5 "/usr/include/linux/param.h" # 29 "/usr/include/sys/param.h" # 30 "/usr/include/sys/param.h" # 36 "/usr/include/sys/param.h" # 47 "/usr/include/sys/param.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 53 "/usr/include/sys/param.h" # 54 "/usr/include/sys/param.h" # 60 "/usr/include/sys/param.h" # 73 "/usr/include/sys/param.h" # 78 "/usr/include/sys/param.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/netdb.h" # 17 "/usr/include/netdb.h" # 21 "/usr/include/netdb.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/netdb.h" # 1 "/usr/include/netinet/in.h" # 18 "/usr/include/netinet/in.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 24 "/usr/include/netinet/in.h" # 1 "/usr/include/stdint.h" # 17 "/usr/include/stdint.h" # 21 "/usr/include/stdint.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 27 "/usr/include/stdint.h" # 1 "/usr/include/bits/wchar.h" # 18 "/usr/include/bits/wchar.h" # 28 "/usr/include/stdint.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/stdint.h" # 30 "/usr/include/stdint.h" # 32 "/usr/include/stdint.h" # 34 "/usr/include/stdint.h" # 37 "/usr/include/stdint.h" typedef signed char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 41 "/usr/include/stdint.h" typedef long int int64_t ; # 48 "/usr/include/stdint.h" typedef unsigned char uint8_t ; typedef unsigned short int uint16_t ; # 52 "/usr/include/stdint.h" typedef unsigned int uint32_t ; # 56 "/usr/include/stdint.h" typedef unsigned long int uint64_t ; # 63 "/usr/include/stdint.h" # 65 "/usr/include/stdint.h" typedef signed char int_least8_t ; typedef short int int_least16_t ; typedef int int_least32_t ; # 70 "/usr/include/stdint.h" typedef long int int_least64_t ; # 76 "/usr/include/stdint.h" typedef unsigned char uint_least8_t ; typedef unsigned short int uint_least16_t ; typedef unsigned int uint_least32_t ; # 81 "/usr/include/stdint.h" typedef unsigned long int uint_least64_t ; # 88 "/usr/include/stdint.h" # 90 "/usr/include/stdint.h" typedef signed char int_fast8_t ; # 93 "/usr/include/stdint.h" typedef long int int_fast16_t ; typedef long int int_fast32_t ; typedef long int int_fast64_t ; # 103 "/usr/include/stdint.h" typedef unsigned char uint_fast8_t ; # 106 "/usr/include/stdint.h" typedef unsigned long int uint_fast16_t ; typedef unsigned long int uint_fast32_t ; typedef unsigned long int uint_fast64_t ; # 117 "/usr/include/stdint.h" # 120 "/usr/include/stdint.h" typedef long int intptr_t ; # 123 "/usr/include/stdint.h" typedef unsigned long int uintptr_t ; # 133 "/usr/include/stdint.h" # 135 "/usr/include/stdint.h" typedef long int intmax_t ; typedef unsigned long int uintmax_t ; # 146 "/usr/include/stdint.h" # 157 "/usr/include/stdint.h" # 159 "/usr/include/stdint.h" # 164 "/usr/include/stdint.h" # 170 "/usr/include/stdint.h" # 177 "/usr/include/stdint.h" # 182 "/usr/include/stdint.h" # 188 "/usr/include/stdint.h" # 195 "/usr/include/stdint.h" # 205 "/usr/include/stdint.h" # 216 "/usr/include/stdint.h" # 228 "/usr/include/stdint.h" # 240 "/usr/include/stdint.h" # 242 "/usr/include/stdint.h" # 245 "/usr/include/stdint.h" # 249 "/usr/include/stdint.h" # 251 "/usr/include/stdint.h" # 260 "/usr/include/stdint.h" # 264 "/usr/include/stdint.h" # 271 "/usr/include/stdint.h" # 273 "/usr/include/stdint.h" # 278 "/usr/include/stdint.h" # 286 "/usr/include/stdint.h" # 289 "/usr/include/stdint.h" # 299 "/usr/include/stdint.h" # 309 "/usr/include/stdint.h" # 25 "/usr/include/netinet/in.h" # 1 "/usr/include/sys/socket.h" # 19 "/usr/include/sys/socket.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/socket.h" # 1 "/usr/include/sys/uio.h" # 17 "/usr/include/sys/uio.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/sys/uio.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 25 "/usr/include/sys/uio.h" # 28 "/usr/include/sys/uio.h" # 1 "/usr/include/bits/uio.h" # 17 "/usr/include/bits/uio.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 27 "/usr/include/bits/uio.h" # 31 "/usr/include/bits/uio.h" # 39 "/usr/include/bits/uio.h" # 43 "/usr/include/bits/uio.h" struct iovec { void * iov_base ; size_t iov_len ; } ; # 30 "/usr/include/sys/uio.h" # 39 "/usr/include/sys/uio.h" extern ssize_t readv ( int __fd , const struct iovec * __iovec , int __count ) ; # 50 "/usr/include/sys/uio.h" extern ssize_t writev ( int __fd , const struct iovec * __iovec , int __count ) ; # 65 "/usr/include/sys/uio.h" extern ssize_t preadv ( int __fd , const struct iovec * __iovec , int __count , __off_t __offset ) ; # 77 "/usr/include/sys/uio.h" extern ssize_t pwritev ( int __fd , const struct iovec * __iovec , int __count , __off_t __offset ) ; # 29 "/usr/include/sys/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 31 "/usr/include/sys/socket.h" # 39 "/usr/include/sys/socket.h" # 1 "/usr/include/bits/socket.h" # 19 "/usr/include/bits/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 30 "/usr/include/bits/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 32 "/usr/include/bits/socket.h" # 33 "/usr/include/bits/socket.h" # 35 "/usr/include/bits/socket.h" typedef __socklen_t socklen_t ; # 39 "/usr/include/bits/socket.h" enum __socket_type { SOCK_STREAM = 1 , # 45 "/usr/include/bits/socket.h" SOCK_DGRAM = 2 , # 48 "/usr/include/bits/socket.h" SOCK_RAW = 3 , # 50 "/usr/include/bits/socket.h" SOCK_RDM = 4 , # 52 "/usr/include/bits/socket.h" SOCK_SEQPACKET = 5 , # 55 "/usr/include/bits/socket.h" SOCK_DCCP = 6 , # 57 "/usr/include/bits/socket.h" SOCK_PACKET = 10 , # 59 "/usr/include/bits/socket.h" # 62 "/usr/include/bits/socket.h" # 65 "/usr/include/bits/socket.h" SOCK_CLOEXEC = 02000000 , # 68 "/usr/include/bits/socket.h" SOCK_NONBLOCK = 04000 # 71 "/usr/include/bits/socket.h" } ; # 73 "/usr/include/bits/socket.h" # 116 "/usr/include/bits/socket.h" # 162 "/usr/include/bits/socket.h" # 171 "/usr/include/bits/socket.h" # 174 "/usr/include/bits/socket.h" # 1 "/usr/include/bits/sockaddr.h" # 18 "/usr/include/bits/sockaddr.h" # 22 "/usr/include/bits/sockaddr.h" # 28 "/usr/include/bits/sockaddr.h" typedef unsigned short int sa_family_t ; # 33 "/usr/include/bits/sockaddr.h" # 176 "/usr/include/bits/socket.h" # 177 "/usr/include/bits/socket.h" struct sockaddr { sa_family_t sa_family ; char sa_data [ 14 ] ; } ; # 186 "/usr/include/bits/socket.h" # 191 "/usr/include/bits/socket.h" struct sockaddr_storage { sa_family_t ss_family ; unsigned long int __ss_align ; char __ss_padding [ ( 128 - ( 2 * sizeof ( unsigned long int ) ) ) ] ; } ; # 199 "/usr/include/bits/socket.h" enum { MSG_OOB = 0x01 , # 204 "/usr/include/bits/socket.h" MSG_PEEK = 0x02 , # 206 "/usr/include/bits/socket.h" MSG_DONTROUTE = 0x04 , # 213 "/usr/include/bits/socket.h" MSG_CTRUNC = 0x08 , # 215 "/usr/include/bits/socket.h" MSG_PROXY = 0x10 , # 217 "/usr/include/bits/socket.h" MSG_TRUNC = 0x20 , # 219 "/usr/include/bits/socket.h" MSG_DONTWAIT = 0x40 , # 221 "/usr/include/bits/socket.h" MSG_EOR = 0x80 , # 223 "/usr/include/bits/socket.h" MSG_WAITALL = 0x100 , # 225 "/usr/include/bits/socket.h" MSG_FIN = 0x200 , # 227 "/usr/include/bits/socket.h" MSG_SYN = 0x400 , # 229 "/usr/include/bits/socket.h" MSG_CONFIRM = 0x800 , # 231 "/usr/include/bits/socket.h" MSG_RST = 0x1000 , # 233 "/usr/include/bits/socket.h" MSG_ERRQUEUE = 0x2000 , # 235 "/usr/include/bits/socket.h" MSG_NOSIGNAL = 0x4000 , # 237 "/usr/include/bits/socket.h" MSG_MORE = 0x8000 , # 240 "/usr/include/bits/socket.h" MSG_CMSG_CLOEXEC = 0x40000000 # 242 "/usr/include/bits/socket.h" # 244 "/usr/include/bits/socket.h" } ; # 248 "/usr/include/bits/socket.h" struct msghdr { void * msg_name ; socklen_t msg_namelen ; # 254 "/usr/include/bits/socket.h" struct iovec * msg_iov ; size_t msg_iovlen ; # 257 "/usr/include/bits/socket.h" void * msg_control ; size_t msg_controllen ; # 261 "/usr/include/bits/socket.h" # 263 "/usr/include/bits/socket.h" int msg_flags ; } ; # 266 "/usr/include/bits/socket.h" struct cmsghdr { size_t cmsg_len ; # 273 "/usr/include/bits/socket.h" int cmsg_level ; int cmsg_type ; # 277 "/usr/include/bits/socket.h" unsigned char __cmsg_data [ ] ; # 279 "/usr/include/bits/socket.h" } ; # 281 "/usr/include/bits/socket.h" # 297 "/usr/include/bits/socket.h" extern struct cmsghdr * __cmsg_nxthdr ( struct msghdr * __mhdr , struct cmsghdr * __cmsg ) ; # 323 "/usr/include/bits/socket.h" enum { SCM_RIGHTS = 0x01 # 332 "/usr/include/bits/socket.h" } ; # 344 "/usr/include/bits/socket.h" # 369 "/usr/include/bits/socket.h" # 1 "/usr/include/asm/socket.h" # 1 "/usr/include/asm-generic/socket.h" # 1 "/usr/include/asm/sockios.h" # 1 "/usr/include/asm-generic/sockios.h" # 4 "/usr/include/asm-generic/sockios.h" # 2 "/usr/include/asm/sockios.h" # 5 "/usr/include/asm-generic/socket.h" # 6 "/usr/include/asm-generic/socket.h" # 24 "/usr/include/asm-generic/socket.h" # 35 "/usr/include/asm-generic/socket.h" # 42 "/usr/include/asm-generic/socket.h" # 2 "/usr/include/asm/socket.h" # 371 "/usr/include/bits/socket.h" # 403 "/usr/include/bits/socket.h" struct linger { int l_onoff ; int l_linger ; } ; # 41 "/usr/include/sys/socket.h" # 44 "/usr/include/sys/socket.h" struct osockaddr { unsigned short int sa_family ; unsigned char sa_data [ 14 ] ; } ; # 53 "/usr/include/sys/socket.h" enum { SHUT_RD = 0 , # 58 "/usr/include/sys/socket.h" SHUT_WR , # 60 "/usr/include/sys/socket.h" SHUT_RDWR # 62 "/usr/include/sys/socket.h" } ; # 69 "/usr/include/sys/socket.h" # 104 "/usr/include/sys/socket.h" extern int socket ( int __domain , int __type , int __protocol ) ; # 110 "/usr/include/sys/socket.h" extern int socketpair ( int __domain , int __type , int __protocol , int __fds [ 2 ] ) ; # 114 "/usr/include/sys/socket.h" extern int bind ( int __fd , const struct sockaddr * __addr , socklen_t __len ) ; # 118 "/usr/include/sys/socket.h" extern int getsockname ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __len ) ; # 128 "/usr/include/sys/socket.h" extern int connect ( int __fd , const struct sockaddr * __addr , socklen_t __len ) ; # 132 "/usr/include/sys/socket.h" extern int getpeername ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __len ) ; # 140 "/usr/include/sys/socket.h" extern ssize_t send ( int __fd , const void * __buf , size_t __n , int __flags ) ; # 147 "/usr/include/sys/socket.h" extern ssize_t recv ( int __fd , void * __buf , size_t __n , int __flags ) ; # 154 "/usr/include/sys/socket.h" extern ssize_t sendto ( int __fd , const void * __buf , size_t __n , int __flags , const struct sockaddr * __addr , socklen_t __addr_len ) ; # 165 "/usr/include/sys/socket.h" extern ssize_t recvfrom ( int __fd , void * __restrict __buf , size_t __n , int __flags , struct sockaddr * __restrict __addr , socklen_t * __restrict __addr_len ) ; # 175 "/usr/include/sys/socket.h" extern ssize_t sendmsg ( int __fd , const struct msghdr * __message , int __flags ) ; # 183 "/usr/include/sys/socket.h" extern ssize_t recvmsg ( int __fd , struct msghdr * __message , int __flags ) ; # 189 "/usr/include/sys/socket.h" extern int getsockopt ( int __fd , int __level , int __optname , void * __restrict __optval , socklen_t * __restrict __optlen ) ; # 196 "/usr/include/sys/socket.h" extern int setsockopt ( int __fd , int __level , int __optname , const void * __optval , socklen_t __optlen ) ; # 203 "/usr/include/sys/socket.h" extern int listen ( int __fd , int __n ) ; # 213 "/usr/include/sys/socket.h" extern int accept ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __addr_len ) ; # 231 "/usr/include/sys/socket.h" extern int shutdown ( int __fd , int __how ) ; # 236 "/usr/include/sys/socket.h" extern int sockatmark ( int __fd ) ; # 244 "/usr/include/sys/socket.h" extern int isfdtype ( int __fd , int __fdtype ) ; # 249 "/usr/include/sys/socket.h" # 26 "/usr/include/netinet/in.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 27 "/usr/include/netinet/in.h" # 31 "/usr/include/netinet/in.h" enum { IPPROTO_IP = 0 , # 36 "/usr/include/netinet/in.h" IPPROTO_HOPOPTS = 0 , # 38 "/usr/include/netinet/in.h" IPPROTO_ICMP = 1 , # 40 "/usr/include/netinet/in.h" IPPROTO_IGMP = 2 , # 42 "/usr/include/netinet/in.h" IPPROTO_IPIP = 4 , # 44 "/usr/include/netinet/in.h" IPPROTO_TCP = 6 , # 46 "/usr/include/netinet/in.h" IPPROTO_EGP = 8 , # 48 "/usr/include/netinet/in.h" IPPROTO_PUP = 12 , # 50 "/usr/include/netinet/in.h" IPPROTO_UDP = 17 , # 52 "/usr/include/netinet/in.h" IPPROTO_IDP = 22 , # 54 "/usr/include/netinet/in.h" IPPROTO_TP = 29 , # 56 "/usr/include/netinet/in.h" IPPROTO_DCCP = 33 , # 58 "/usr/include/netinet/in.h" IPPROTO_IPV6 = 41 , # 60 "/usr/include/netinet/in.h" IPPROTO_ROUTING = 43 , # 62 "/usr/include/netinet/in.h" IPPROTO_FRAGMENT = 44 , # 64 "/usr/include/netinet/in.h" IPPROTO_RSVP = 46 , # 66 "/usr/include/netinet/in.h" IPPROTO_GRE = 47 , # 68 "/usr/include/netinet/in.h" IPPROTO_ESP = 50 , # 70 "/usr/include/netinet/in.h" IPPROTO_AH = 51 , # 72 "/usr/include/netinet/in.h" IPPROTO_ICMPV6 = 58 , # 74 "/usr/include/netinet/in.h" IPPROTO_NONE = 59 , # 76 "/usr/include/netinet/in.h" IPPROTO_DSTOPTS = 60 , # 78 "/usr/include/netinet/in.h" IPPROTO_MTP = 92 , # 80 "/usr/include/netinet/in.h" IPPROTO_ENCAP = 98 , # 82 "/usr/include/netinet/in.h" IPPROTO_PIM = 103 , # 84 "/usr/include/netinet/in.h" IPPROTO_COMP = 108 , # 86 "/usr/include/netinet/in.h" IPPROTO_SCTP = 132 , # 88 "/usr/include/netinet/in.h" IPPROTO_UDPLITE = 136 , # 90 "/usr/include/netinet/in.h" IPPROTO_RAW = 255 , # 92 "/usr/include/netinet/in.h" IPPROTO_MAX } ; # 96 "/usr/include/netinet/in.h" typedef uint16_t in_port_t ; # 99 "/usr/include/netinet/in.h" enum { IPPORT_ECHO = 7 , IPPORT_DISCARD = 9 , IPPORT_SYSTAT = 11 , IPPORT_DAYTIME = 13 , IPPORT_NETSTAT = 15 , IPPORT_FTP = 21 , IPPORT_TELNET = 23 , IPPORT_SMTP = 25 , IPPORT_TIMESERVER = 37 , IPPORT_NAMESERVER = 42 , IPPORT_WHOIS = 43 , IPPORT_MTP = 57 , # 115 "/usr/include/netinet/in.h" IPPORT_TFTP = 69 , IPPORT_RJE = 77 , IPPORT_FINGER = 79 , IPPORT_TTYLINK = 87 , IPPORT_SUPDUP = 95 , # 122 "/usr/include/netinet/in.h" IPPORT_EXECSERVER = 512 , IPPORT_LOGINSERVER = 513 , IPPORT_CMDSERVER = 514 , IPPORT_EFSSERVER = 520 , # 127 "/usr/include/netinet/in.h" IPPORT_BIFFUDP = 512 , IPPORT_WHOSERVER = 513 , IPPORT_ROUTESERVER = 520 , # 132 "/usr/include/netinet/in.h" IPPORT_RESERVED = 1024 , # 135 "/usr/include/netinet/in.h" IPPORT_USERRESERVED = 5000 } ; # 140 "/usr/include/netinet/in.h" typedef uint32_t in_addr_t ; struct in_addr { in_addr_t s_addr ; } ; # 151 "/usr/include/netinet/in.h" # 176 "/usr/include/netinet/in.h" # 178 "/usr/include/netinet/in.h" # 180 "/usr/include/netinet/in.h" # 183 "/usr/include/netinet/in.h" # 185 "/usr/include/netinet/in.h" # 190 "/usr/include/netinet/in.h" # 197 "/usr/include/netinet/in.h" struct in6_addr { union { uint8_t __u6_addr8 [ 16 ] ; # 204 "/usr/include/netinet/in.h" uint16_t __u6_addr16 [ 8 ] ; uint32_t __u6_addr32 [ 4 ] ; # 207 "/usr/include/netinet/in.h" } __in6_u ; # 213 "/usr/include/netinet/in.h" } ; # 215 "/usr/include/netinet/in.h" extern const struct in6_addr in6addr_any ; extern const struct in6_addr in6addr_loopback ; # 224 "/usr/include/netinet/in.h" struct sockaddr_in { sa_family_t sin_family ; in_port_t sin_port ; struct in_addr sin_addr ; # 231 "/usr/include/netinet/in.h" unsigned char sin_zero [ sizeof ( struct sockaddr ) - ( sizeof ( unsigned short int ) ) - sizeof ( in_port_t ) - sizeof ( struct in_addr ) ] ; } ; # 238 "/usr/include/netinet/in.h" struct sockaddr_in6 { sa_family_t sin6_family ; in_port_t sin6_port ; uint32_t sin6_flowinfo ; struct in6_addr sin6_addr ; uint32_t sin6_scope_id ; } ; # 250 "/usr/include/netinet/in.h" struct ip_mreq { struct in_addr imr_multiaddr ; # 256 "/usr/include/netinet/in.h" struct in_addr imr_interface ; } ; # 260 "/usr/include/netinet/in.h" struct ip_mreq_source { struct in_addr imr_multiaddr ; # 265 "/usr/include/netinet/in.h" struct in_addr imr_interface ; # 268 "/usr/include/netinet/in.h" struct in_addr imr_sourceaddr ; } ; # 274 "/usr/include/netinet/in.h" struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr ; # 280 "/usr/include/netinet/in.h" unsigned int ipv6mr_interface ; } ; # 286 "/usr/include/netinet/in.h" struct group_req { uint32_t gr_interface ; # 292 "/usr/include/netinet/in.h" struct sockaddr_storage gr_group ; } ; # 296 "/usr/include/netinet/in.h" struct group_source_req { uint32_t gsr_interface ; # 301 "/usr/include/netinet/in.h" struct sockaddr_storage gsr_group ; # 304 "/usr/include/netinet/in.h" struct sockaddr_storage gsr_source ; } ; # 309 "/usr/include/netinet/in.h" struct ip_msfilter { struct in_addr imsf_multiaddr ; # 315 "/usr/include/netinet/in.h" struct in_addr imsf_interface ; # 318 "/usr/include/netinet/in.h" uint32_t imsf_fmode ; # 321 "/usr/include/netinet/in.h" uint32_t imsf_numsrc ; struct in_addr imsf_slist [ 1 ] ; } ; # 331 "/usr/include/netinet/in.h" struct group_filter { uint32_t gf_interface ; # 336 "/usr/include/netinet/in.h" struct sockaddr_storage gf_group ; # 339 "/usr/include/netinet/in.h" uint32_t gf_fmode ; # 342 "/usr/include/netinet/in.h" uint32_t gf_numsrc ; struct sockaddr_storage gf_slist [ 1 ] ; } ; # 355 "/usr/include/netinet/in.h" # 1 "/usr/include/bits/in.h" # 17 "/usr/include/bits/in.h" # 19 "/usr/include/bits/in.h" # 27 "/usr/include/bits/in.h" # 33 "/usr/include/bits/in.h" # 69 "/usr/include/bits/in.h" # 75 "/usr/include/bits/in.h" # 85 "/usr/include/bits/in.h" struct ip_opts { struct in_addr ip_dst ; char ip_opts [ 40 ] ; } ; # 92 "/usr/include/bits/in.h" struct ip_mreqn { struct in_addr imr_multiaddr ; struct in_addr imr_address ; int imr_ifindex ; } ; # 100 "/usr/include/bits/in.h" struct in_pktinfo { int ipi_ifindex ; struct in_addr ipi_spec_dst ; struct in_addr ipi_addr ; } ; # 111 "/usr/include/bits/in.h" # 156 "/usr/include/bits/in.h" # 162 "/usr/include/bits/in.h" # 168 "/usr/include/bits/in.h" # 172 "/usr/include/bits/in.h" # 357 "/usr/include/netinet/in.h" # 363 "/usr/include/netinet/in.h" # 365 "/usr/include/netinet/in.h" extern uint32_t ntohl ( uint32_t __netlong ) __attribute__ ( ( __const__ ) ) ; extern uint16_t ntohs ( uint16_t __netshort ) __attribute__ ( ( __const__ ) ) ; extern uint32_t htonl ( uint32_t __hostlong ) __attribute__ ( ( __const__ ) ) ; extern uint16_t htons ( uint16_t __hostshort ) __attribute__ ( ( __const__ ) ) ; # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 374 "/usr/include/netinet/in.h" # 375 "/usr/include/netinet/in.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 377 "/usr/include/netinet/in.h" # 439 "/usr/include/netinet/in.h" extern int bindresvport ( int __sockfd , struct sockaddr_in * __sock_in ) ; # 442 "/usr/include/netinet/in.h" extern int bindresvport6 ( int __sockfd , struct sockaddr_in6 * __sock_in ) ; # 29 "/usr/include/netdb.h" # 1 "/usr/include/stdint.h" # 17 "/usr/include/stdint.h" # 21 "/usr/include/stdint.h" # 30 "/usr/include/netdb.h" # 32 "/usr/include/netdb.h" # 1 "/usr/include/rpc/netdb.h" # 29 "/usr/include/rpc/netdb.h" # 34 "/usr/include/rpc/netdb.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 40 "/usr/include/rpc/netdb.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 43 "/usr/include/rpc/netdb.h" # 46 "/usr/include/rpc/netdb.h" struct rpcent { char * r_name ; char * * r_aliases ; int r_number ; } ; # 53 "/usr/include/rpc/netdb.h" extern void setrpcent ( int __stayopen ) ; extern void endrpcent ( void ) ; extern struct rpcent * getrpcbyname ( const char * __name ) ; extern struct rpcent * getrpcbynumber ( int __number ) ; extern struct rpcent * getrpcent ( void ) ; # 60 "/usr/include/rpc/netdb.h" extern int getrpcbyname_r ( const char * __name , struct rpcent * __result_buf , char * __buffer , size_t __buflen , struct rpcent * * __result ) ; # 64 "/usr/include/rpc/netdb.h" extern int getrpcbynumber_r ( int __number , struct rpcent * __result_buf , char * __buffer , size_t __buflen , struct rpcent * * __result ) ; # 68 "/usr/include/rpc/netdb.h" extern int getrpcent_r ( struct rpcent * __result_buf , char * __buffer , size_t __buflen , struct rpcent * * __result ) ; # 34 "/usr/include/netdb.h" # 1 "/usr/include/bits/netdb.h" # 17 "/usr/include/bits/netdb.h" # 26 "/usr/include/bits/netdb.h" struct netent { char * n_name ; char * * n_aliases ; int n_addrtype ; uint32_t n_net ; } ; # 44 "/usr/include/netdb.h" # 45 "/usr/include/netdb.h" # 57 "/usr/include/netdb.h" # 60 "/usr/include/netdb.h" extern int * __h_errno_location ( void ) __attribute__ ( ( __const__ ) ) ; # 64 "/usr/include/netdb.h" # 79 "/usr/include/netdb.h" # 90 "/usr/include/netdb.h" extern void herror ( const char * __str ) ; # 93 "/usr/include/netdb.h" extern const char * hstrerror ( int __err_num ) ; # 98 "/usr/include/netdb.h" struct hostent { char * h_name ; char * * h_aliases ; int h_addrtype ; int h_length ; char * * h_addr_list ; # 109 "/usr/include/netdb.h" } ; # 115 "/usr/include/netdb.h" extern void sethostent ( int __stay_open ) ; # 121 "/usr/include/netdb.h" extern void endhostent ( void ) ; # 128 "/usr/include/netdb.h" extern struct hostent * gethostent ( void ) ; # 135 "/usr/include/netdb.h" extern struct hostent * gethostbyaddr ( const void * __addr , __socklen_t __len , int __type ) ; # 142 "/usr/include/netdb.h" extern struct hostent * gethostbyname ( const char * __name ) ; # 153 "/usr/include/netdb.h" extern struct hostent * gethostbyname2 ( const char * __name , int __af ) ; # 165 "/usr/include/netdb.h" extern int gethostent_r ( struct hostent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct hostent * * __restrict __result , int * __restrict __h_errnop ) ; # 171 "/usr/include/netdb.h" extern int gethostbyaddr_r ( const void * __restrict __addr , __socklen_t __len , int __type , struct hostent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct hostent * * __restrict __result , int * __restrict __h_errnop ) ; # 178 "/usr/include/netdb.h" extern int gethostbyname_r ( const char * __restrict __name , struct hostent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct hostent * * __restrict __result , int * __restrict __h_errnop ) ; # 184 "/usr/include/netdb.h" extern int gethostbyname2_r ( const char * __restrict __name , int __af , struct hostent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct hostent * * __restrict __result , int * __restrict __h_errnop ) ; # 196 "/usr/include/netdb.h" extern void setnetent ( int __stay_open ) ; # 202 "/usr/include/netdb.h" extern void endnetent ( void ) ; # 209 "/usr/include/netdb.h" extern struct netent * getnetent ( void ) ; # 216 "/usr/include/netdb.h" extern struct netent * getnetbyaddr ( uint32_t __net , int __type ) ; # 222 "/usr/include/netdb.h" extern struct netent * getnetbyname ( const char * __name ) ; # 235 "/usr/include/netdb.h" extern int getnetent_r ( struct netent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct netent * * __restrict __result , int * __restrict __h_errnop ) ; # 241 "/usr/include/netdb.h" extern int getnetbyaddr_r ( uint32_t __net , int __type , struct netent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct netent * * __restrict __result , int * __restrict __h_errnop ) ; # 247 "/usr/include/netdb.h" extern int getnetbyname_r ( const char * __restrict __name , struct netent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct netent * * __restrict __result , int * __restrict __h_errnop ) ; # 255 "/usr/include/netdb.h" struct servent { char * s_name ; char * * s_aliases ; int s_port ; char * s_proto ; } ; # 268 "/usr/include/netdb.h" extern void setservent ( int __stay_open ) ; # 274 "/usr/include/netdb.h" extern void endservent ( void ) ; # 281 "/usr/include/netdb.h" extern struct servent * getservent ( void ) ; # 288 "/usr/include/netdb.h" extern struct servent * getservbyname ( const char * __name , const char * __proto ) ; # 296 "/usr/include/netdb.h" extern struct servent * getservbyport ( int __port , const char * __proto ) ; # 307 "/usr/include/netdb.h" extern int getservent_r ( struct servent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct servent * * __restrict __result ) ; # 312 "/usr/include/netdb.h" extern int getservbyname_r ( const char * __restrict __name , const char * __restrict __proto , struct servent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct servent * * __restrict __result ) ; # 318 "/usr/include/netdb.h" extern int getservbyport_r ( int __port , const char * __restrict __proto , struct servent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct servent * * __restrict __result ) ; # 325 "/usr/include/netdb.h" struct protoent { char * p_name ; char * * p_aliases ; int p_proto ; } ; # 337 "/usr/include/netdb.h" extern void setprotoent ( int __stay_open ) ; # 343 "/usr/include/netdb.h" extern void endprotoent ( void ) ; # 350 "/usr/include/netdb.h" extern struct protoent * getprotoent ( void ) ; # 356 "/usr/include/netdb.h" extern struct protoent * getprotobyname ( const char * __name ) ; # 362 "/usr/include/netdb.h" extern struct protoent * getprotobynumber ( int __proto ) ; # 373 "/usr/include/netdb.h" extern int getprotoent_r ( struct protoent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct protoent * * __restrict __result ) ; # 378 "/usr/include/netdb.h" extern int getprotobyname_r ( const char * __restrict __name , struct protoent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct protoent * * __restrict __result ) ; # 383 "/usr/include/netdb.h" extern int getprotobynumber_r ( int __proto , struct protoent * __restrict __result_buf , char * __restrict __buf , size_t __buflen , struct protoent * * __restrict __result ) ; # 394 "/usr/include/netdb.h" extern int setnetgrent ( const char * __netgroup ) ; # 402 "/usr/include/netdb.h" extern void endnetgrent ( void ) ; # 411 "/usr/include/netdb.h" extern int getnetgrent ( char * * __restrict __hostp , char * * __restrict __userp , char * * __restrict __domainp ) ; # 422 "/usr/include/netdb.h" extern int innetgr ( const char * __netgroup , const char * __host , const char * __user , const char * __domain ) ; # 431 "/usr/include/netdb.h" extern int getnetgrent_r ( char * * __restrict __hostp , char * * __restrict __userp , char * * __restrict __domainp , char * __restrict __buffer , size_t __buflen ) ; # 450 "/usr/include/netdb.h" extern int rcmd ( char * * __restrict __ahost , unsigned short int __rport , const char * __restrict __locuser , const char * __restrict __remuser , const char * __restrict __cmd , int * __restrict __fd2p ) ; # 462 "/usr/include/netdb.h" extern int rcmd_af ( char * * __restrict __ahost , unsigned short int __rport , const char * __restrict __locuser , const char * __restrict __remuser , const char * __restrict __cmd , int * __restrict __fd2p , sa_family_t __af ) ; # 478 "/usr/include/netdb.h" extern int rexec ( char * * __restrict __ahost , int __rport , const char * __restrict __name , const char * __restrict __pass , const char * __restrict __cmd , int * __restrict __fd2p ) ; # 490 "/usr/include/netdb.h" extern int rexec_af ( char * * __restrict __ahost , int __rport , const char * __restrict __name , const char * __restrict __pass , const char * __restrict __cmd , int * __restrict __fd2p , sa_family_t __af ) ; # 504 "/usr/include/netdb.h" extern int ruserok ( const char * __rhost , int __suser , const char * __remuser , const char * __locuser ) ; # 514 "/usr/include/netdb.h" extern int ruserok_af ( const char * __rhost , int __suser , const char * __remuser , const char * __locuser , sa_family_t __af ) ; # 527 "/usr/include/netdb.h" extern int iruserok ( uint32_t __raddr , int __suser , const char * __remuser , const char * __locuser ) ; # 538 "/usr/include/netdb.h" extern int iruserok_af ( const void * __raddr , int __suser , const char * __remuser , const char * __locuser , sa_family_t __af ) ; # 550 "/usr/include/netdb.h" extern int rresvport ( int * __alport ) ; # 559 "/usr/include/netdb.h" extern int rresvport_af ( int * __alport , sa_family_t __af ) ; # 564 "/usr/include/netdb.h" # 566 "/usr/include/netdb.h" struct addrinfo { int ai_flags ; int ai_family ; int ai_socktype ; int ai_protocol ; socklen_t ai_addrlen ; struct sockaddr * ai_addr ; char * ai_canonname ; struct addrinfo * ai_next ; } ; # 597 "/usr/include/netdb.h" # 617 "/usr/include/netdb.h" # 661 "/usr/include/netdb.h" extern int getaddrinfo ( const char * __restrict __name , const char * __restrict __service , const struct addrinfo * __restrict __req , struct addrinfo * * __restrict __pai ) ; # 667 "/usr/include/netdb.h" extern void freeaddrinfo ( struct addrinfo * __ai ) ; # 670 "/usr/include/netdb.h" extern const char * gai_strerror ( int __ecode ) ; # 676 "/usr/include/netdb.h" extern int getnameinfo ( const struct sockaddr * __restrict __sa , socklen_t __salen , char * __restrict __host , socklen_t __hostlen , char * __restrict __serv , socklen_t __servlen , int __flags ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/search.h" # 18 "/usr/include/search.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/search.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 27 "/usr/include/search.h" # 32 "/usr/include/search.h" # 44 "/usr/include/search.h" extern void insque ( void * __elem , void * __prev ) ; # 47 "/usr/include/search.h" extern void remque ( void * __elem ) ; # 52 "/usr/include/search.h" # 55 "/usr/include/search.h" typedef int ( * __compar_fn_t ) ( const void * , const void * ) ; # 62 "/usr/include/search.h" typedef enum { FIND , ENTER } ACTION ; # 70 "/usr/include/search.h" typedef struct entry { char * key ; void * data ; } ENTRY ; # 77 "/usr/include/search.h" struct _ENTRY ; # 82 "/usr/include/search.h" # 87 "/usr/include/search.h" extern ENTRY * hsearch ( ENTRY __item , ACTION __action ) ; # 90 "/usr/include/search.h" extern int hcreate ( size_t __nel ) ; # 93 "/usr/include/search.h" extern void hdestroy ( void ) ; # 117 "/usr/include/search.h" typedef enum { preorder , postorder , endorder , leaf } VISIT ; # 129 "/usr/include/search.h" extern void * tsearch ( const void * __key , void * * __rootp , __compar_fn_t __compar ) ; # 134 "/usr/include/search.h" extern void * tfind ( const void * __key , void * const * __rootp , __compar_fn_t __compar ) ; # 138 "/usr/include/search.h" extern void * tdelete ( const void * __restrict __key , void * * __restrict __rootp , __compar_fn_t __compar ) ; # 145 "/usr/include/search.h" typedef void ( * __action_fn_t ) ( const void * __nodep , VISIT __value , int __level ) ; # 150 "/usr/include/search.h" extern void twalk ( const void * __root , __action_fn_t __action ) ; # 164 "/usr/include/search.h" extern void * lfind ( const void * __key , const void * __base , size_t * __nmemb , size_t __size , __compar_fn_t __compar ) ; # 169 "/usr/include/search.h" extern void * lsearch ( const void * __key , void * __base , size_t * __nmemb , size_t __size , __compar_fn_t __compar ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file mathimf.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/procfs.h" # 17 "/usr/include/sys/procfs.h" # 29 "/usr/include/sys/procfs.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 32 "/usr/include/sys/procfs.h" # 1 "/usr/include/sys/time.h" # 18 "/usr/include/sys/time.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 24 "/usr/include/sys/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 26 "/usr/include/sys/time.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 28 "/usr/include/sys/time.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 30 "/usr/include/sys/time.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 32 "/usr/include/sys/time.h" # 56 "/usr/include/sys/time.h" struct timezone { int tz_minuteswest ; int tz_dsttime ; } ; # 63 "/usr/include/sys/time.h" typedef struct timezone * __restrict __timezone_ptr_t ; # 72 "/usr/include/sys/time.h" extern int gettimeofday ( struct timeval * __restrict __tv , __timezone_ptr_t __tz ) ; # 78 "/usr/include/sys/time.h" extern int settimeofday ( const struct timeval * __tv , const struct timezone * __tz ) ; # 86 "/usr/include/sys/time.h" extern int adjtime ( const struct timeval * __delta , struct timeval * __olddelta ) ; # 92 "/usr/include/sys/time.h" enum __itimer_which { ITIMER_REAL = 0 , # 98 "/usr/include/sys/time.h" ITIMER_VIRTUAL = 1 , # 101 "/usr/include/sys/time.h" ITIMER_PROF = 2 # 105 "/usr/include/sys/time.h" } ; # 108 "/usr/include/sys/time.h" struct itimerval { struct timeval it_interval ; struct timeval it_value ; } ; # 122 "/usr/include/sys/time.h" typedef int __itimer_which_t ; # 126 "/usr/include/sys/time.h" extern int getitimer ( __itimer_which_t __which , struct itimerval * __value ) ; # 132 "/usr/include/sys/time.h" extern int setitimer ( __itimer_which_t __which , const struct itimerval * __restrict __new , struct itimerval * __restrict __old ) ; # 139 "/usr/include/sys/time.h" extern int utimes ( const char * __file , const struct timeval __tvp [ 2 ] ) ; # 144 "/usr/include/sys/time.h" extern int lutimes ( const char * __file , const struct timeval __tvp [ 2 ] ) ; # 148 "/usr/include/sys/time.h" extern int futimes ( int __fd , const struct timeval __tvp [ 2 ] ) ; # 163 "/usr/include/sys/time.h" # 33 "/usr/include/sys/procfs.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 34 "/usr/include/sys/procfs.h" # 1 "/usr/include/sys/user.h" # 17 "/usr/include/sys/user.h" # 24 "/usr/include/sys/user.h" # 1 "/usr/include/bits/wordsize.h" # 27 "/usr/include/sys/user.h" # 30 "/usr/include/sys/user.h" struct user_fpregs_struct { __uint16_t cwd ; __uint16_t swd ; __uint16_t ftw ; __uint16_t fop ; __uint64_t rip ; __uint64_t rdp ; __uint32_t mxcsr ; __uint32_t mxcr_mask ; __uint32_t st_space [ 32 ] ; __uint32_t xmm_space [ 64 ] ; __uint32_t padding [ 24 ] ; } ; # 45 "/usr/include/sys/user.h" struct user_regs_struct { unsigned long r15 ; unsigned long r14 ; unsigned long r13 ; unsigned long r12 ; unsigned long rbp ; unsigned long rbx ; unsigned long r11 ; unsigned long r10 ; unsigned long r9 ; unsigned long r8 ; unsigned long rax ; unsigned long rcx ; unsigned long rdx ; unsigned long rsi ; unsigned long rdi ; unsigned long orig_rax ; unsigned long rip ; unsigned long cs ; unsigned long eflags ; unsigned long rsp ; unsigned long ss ; unsigned long fs_base ; unsigned long gs_base ; unsigned long ds ; unsigned long es ; unsigned long fs ; unsigned long gs ; } ; # 76 "/usr/include/sys/user.h" struct user { struct user_regs_struct regs ; int u_fpvalid ; struct user_fpregs_struct i387 ; unsigned long int u_tsize ; unsigned long int u_dsize ; unsigned long int u_ssize ; unsigned long start_code ; unsigned long start_stack ; long int signal ; int reserved ; struct user_regs_struct * u_ar0 ; struct user_fpregs_struct * u_fpstate ; unsigned long int magic ; char u_comm [ 32 ] ; unsigned long int u_debugreg [ 8 ] ; } ; # 35 "/usr/include/sys/procfs.h" # 38 "/usr/include/sys/procfs.h" typedef unsigned long elf_greg_t ; # 44 "/usr/include/sys/procfs.h" # 46 "/usr/include/sys/procfs.h" typedef elf_greg_t elf_gregset_t [ ( sizeof ( struct user_regs_struct ) / sizeof ( elf_greg_t ) ) ] ; # 59 "/usr/include/sys/procfs.h" typedef struct user_fpregs_struct elf_fpregset_t ; # 63 "/usr/include/sys/procfs.h" struct elf_siginfo { int si_signo ; int si_code ; int si_errno ; } ; # 77 "/usr/include/sys/procfs.h" # 79 "/usr/include/sys/procfs.h" struct elf_prstatus { struct elf_siginfo pr_info ; short int pr_cursig ; unsigned long int pr_sigpend ; unsigned long int pr_sighold ; __pid_t pr_pid ; __pid_t pr_ppid ; __pid_t pr_pgrp ; __pid_t pr_sid ; struct timeval pr_utime ; struct timeval pr_stime ; struct timeval pr_cutime ; struct timeval pr_cstime ; elf_gregset_t pr_reg ; int pr_fpvalid ; } ; # 100 "/usr/include/sys/procfs.h" struct elf_prpsinfo { char pr_state ; char pr_sname ; char pr_zomb ; char pr_nice ; unsigned long int pr_flag ; # 111 "/usr/include/sys/procfs.h" unsigned int pr_uid ; unsigned int pr_gid ; # 114 "/usr/include/sys/procfs.h" int pr_pid , pr_ppid , pr_pgrp , pr_sid ; char pr_fname [ 16 ] ; char pr_psargs [ ( 80 ) ] ; } ; # 123 "/usr/include/sys/procfs.h" # 125 "/usr/include/sys/procfs.h" typedef void * psaddr_t ; # 128 "/usr/include/sys/procfs.h" typedef elf_gregset_t prgregset_t ; typedef elf_fpregset_t prfpregset_t ; # 133 "/usr/include/sys/procfs.h" typedef __pid_t lwpid_t ; # 136 "/usr/include/sys/procfs.h" typedef struct elf_prstatus prstatus_t ; typedef struct elf_prpsinfo prpsinfo_t ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/resource.h" # 17 "/usr/include/sys/resource.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 23 "/usr/include/sys/resource.h" # 24 "/usr/include/sys/resource.h" # 1 "/usr/include/bits/resource.h" # 19 "/usr/include/bits/resource.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 26 "/usr/include/bits/resource.h" # 30 "/usr/include/bits/resource.h" # 32 "/usr/include/bits/resource.h" enum __rlimit_resource { RLIMIT_CPU = 0 , # 39 "/usr/include/bits/resource.h" RLIMIT_FSIZE = 1 , # 43 "/usr/include/bits/resource.h" RLIMIT_DATA = 2 , # 47 "/usr/include/bits/resource.h" RLIMIT_STACK = 3 , # 51 "/usr/include/bits/resource.h" RLIMIT_CORE = 4 , # 55 "/usr/include/bits/resource.h" # 58 "/usr/include/bits/resource.h" __RLIMIT_RSS = 5 , # 62 "/usr/include/bits/resource.h" RLIMIT_NOFILE = 7 , __RLIMIT_OFILE = RLIMIT_NOFILE , # 68 "/usr/include/bits/resource.h" RLIMIT_AS = 9 , # 72 "/usr/include/bits/resource.h" __RLIMIT_NPROC = 6 , # 76 "/usr/include/bits/resource.h" __RLIMIT_MEMLOCK = 8 , # 80 "/usr/include/bits/resource.h" __RLIMIT_LOCKS = 10 , # 84 "/usr/include/bits/resource.h" __RLIMIT_SIGPENDING = 11 , # 88 "/usr/include/bits/resource.h" __RLIMIT_MSGQUEUE = 12 , # 92 "/usr/include/bits/resource.h" # 94 "/usr/include/bits/resource.h" __RLIMIT_NICE = 13 , # 98 "/usr/include/bits/resource.h" __RLIMIT_RTPRIO = 14 , # 103 "/usr/include/bits/resource.h" __RLIMIT_NLIMITS = 15 , __RLIM_NLIMITS = __RLIMIT_NLIMITS # 107 "/usr/include/bits/resource.h" } ; # 109 "/usr/include/bits/resource.h" # 120 "/usr/include/bits/resource.h" # 125 "/usr/include/bits/resource.h" # 127 "/usr/include/bits/resource.h" typedef __rlim_t rlim_t ; # 135 "/usr/include/bits/resource.h" struct rlimit { rlim_t rlim_cur ; rlim_t rlim_max ; } ; # 153 "/usr/include/bits/resource.h" enum __rusage_who { RUSAGE_SELF = 0 , # 160 "/usr/include/bits/resource.h" RUSAGE_CHILDREN = - 1 # 172 "/usr/include/bits/resource.h" } ; # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 176 "/usr/include/bits/resource.h" # 177 "/usr/include/bits/resource.h" struct rusage { struct timeval ru_utime ; struct timeval ru_stime ; long int ru_maxrss ; long int ru_ixrss ; long int ru_idrss ; long int ru_isrss ; long int ru_minflt ; long int ru_majflt ; long int ru_nswap ; long int ru_inblock ; long int ru_oublock ; long int ru_msgsnd ; long int ru_msgrcv ; long int ru_nsignals ; # 213 "/usr/include/bits/resource.h" long int ru_nvcsw ; long int ru_nivcsw ; } ; # 220 "/usr/include/bits/resource.h" # 225 "/usr/include/bits/resource.h" enum __priority_which { PRIO_PROCESS = 0 , # 230 "/usr/include/bits/resource.h" PRIO_PGRP = 1 , # 232 "/usr/include/bits/resource.h" PRIO_USER = 2 # 234 "/usr/include/bits/resource.h" } ; # 26 "/usr/include/sys/resource.h" # 28 "/usr/include/sys/resource.h" typedef __id_t id_t ; # 37 "/usr/include/sys/resource.h" # 43 "/usr/include/sys/resource.h" typedef int __rlimit_resource_t ; typedef int __rusage_who_t ; typedef int __priority_which_t ; # 49 "/usr/include/sys/resource.h" # 51 "/usr/include/sys/resource.h" extern int getrlimit ( __rlimit_resource_t __resource , struct rlimit * __rlimits ) ; # 68 "/usr/include/sys/resource.h" # 70 "/usr/include/sys/resource.h" extern int setrlimit ( __rlimit_resource_t __resource , const struct rlimit * __rlimits ) ; # 87 "/usr/include/sys/resource.h" extern int getrusage ( __rusage_who_t __who , struct rusage * __usage ) ; # 93 "/usr/include/sys/resource.h" extern int getpriority ( __priority_which_t __which , id_t __who ) ; # 97 "/usr/include/sys/resource.h" extern int setpriority ( __priority_which_t __which , id_t __who , int __prio ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/unistd.h" # 17 "/usr/include/unistd.h" # 21 "/usr/include/unistd.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/unistd.h" # 31 "/usr/include/unistd.h" # 34 "/usr/include/unistd.h" # 51 "/usr/include/unistd.h" # 55 "/usr/include/unistd.h" # 67 "/usr/include/unistd.h" # 71 "/usr/include/unistd.h" # 75 "/usr/include/unistd.h" # 79 "/usr/include/unistd.h" # 83 "/usr/include/unistd.h" # 86 "/usr/include/unistd.h" # 97 "/usr/include/unistd.h" # 100 "/usr/include/unistd.h" # 105 "/usr/include/unistd.h" # 108 "/usr/include/unistd.h" # 112 "/usr/include/unistd.h" # 115 "/usr/include/unistd.h" # 201 "/usr/include/unistd.h" # 1 "/usr/include/bits/posix_opt.h" # 18 "/usr/include/bits/posix_opt.h" # 23 "/usr/include/bits/posix_opt.h" # 26 "/usr/include/bits/posix_opt.h" # 29 "/usr/include/bits/posix_opt.h" # 32 "/usr/include/bits/posix_opt.h" # 35 "/usr/include/bits/posix_opt.h" # 38 "/usr/include/bits/posix_opt.h" # 41 "/usr/include/bits/posix_opt.h" # 44 "/usr/include/bits/posix_opt.h" # 47 "/usr/include/bits/posix_opt.h" # 50 "/usr/include/bits/posix_opt.h" # 54 "/usr/include/bits/posix_opt.h" # 57 "/usr/include/bits/posix_opt.h" # 60 "/usr/include/bits/posix_opt.h" # 63 "/usr/include/bits/posix_opt.h" # 66 "/usr/include/bits/posix_opt.h" # 69 "/usr/include/bits/posix_opt.h" # 72 "/usr/include/bits/posix_opt.h" # 76 "/usr/include/bits/posix_opt.h" # 79 "/usr/include/bits/posix_opt.h" # 82 "/usr/include/bits/posix_opt.h" # 85 "/usr/include/bits/posix_opt.h" # 89 "/usr/include/bits/posix_opt.h" # 93 "/usr/include/bits/posix_opt.h" # 96 "/usr/include/bits/posix_opt.h" # 100 "/usr/include/bits/posix_opt.h" # 103 "/usr/include/bits/posix_opt.h" # 106 "/usr/include/bits/posix_opt.h" # 109 "/usr/include/bits/posix_opt.h" # 111 "/usr/include/bits/posix_opt.h" # 114 "/usr/include/bits/posix_opt.h" # 117 "/usr/include/bits/posix_opt.h" # 122 "/usr/include/bits/posix_opt.h" # 125 "/usr/include/bits/posix_opt.h" # 128 "/usr/include/bits/posix_opt.h" # 131 "/usr/include/bits/posix_opt.h" # 134 "/usr/include/bits/posix_opt.h" # 137 "/usr/include/bits/posix_opt.h" # 140 "/usr/include/bits/posix_opt.h" # 143 "/usr/include/bits/posix_opt.h" # 146 "/usr/include/bits/posix_opt.h" # 149 "/usr/include/bits/posix_opt.h" # 152 "/usr/include/bits/posix_opt.h" # 155 "/usr/include/bits/posix_opt.h" # 158 "/usr/include/bits/posix_opt.h" # 161 "/usr/include/bits/posix_opt.h" # 164 "/usr/include/bits/posix_opt.h" # 167 "/usr/include/bits/posix_opt.h" # 170 "/usr/include/bits/posix_opt.h" # 173 "/usr/include/bits/posix_opt.h" # 176 "/usr/include/bits/posix_opt.h" # 179 "/usr/include/bits/posix_opt.h" # 183 "/usr/include/bits/posix_opt.h" # 189 "/usr/include/bits/posix_opt.h" # 204 "/usr/include/unistd.h" # 205 "/usr/include/unistd.h" # 210 "/usr/include/unistd.h" # 216 "/usr/include/unistd.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 219 "/usr/include/unistd.h" # 221 "/usr/include/unistd.h" typedef __ssize_t ssize_t ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 228 "/usr/include/unistd.h" # 231 "/usr/include/unistd.h" # 233 "/usr/include/unistd.h" typedef __gid_t gid_t ; # 238 "/usr/include/unistd.h" typedef __uid_t uid_t ; # 244 "/usr/include/unistd.h" typedef __off_t off_t ; # 256 "/usr/include/unistd.h" typedef __useconds_t useconds_t ; # 261 "/usr/include/unistd.h" typedef __pid_t pid_t ; # 268 "/usr/include/unistd.h" typedef __intptr_t intptr_t ; # 275 "/usr/include/unistd.h" typedef __socklen_t socklen_t ; # 281 "/usr/include/unistd.h" # 287 "/usr/include/unistd.h" extern int access ( const char * __name , int __type ) ; # 304 "/usr/include/unistd.h" extern int faccessat ( int __fd , const char * __file , int __type , int __flag ) ; # 310 "/usr/include/unistd.h" # 318 "/usr/include/unistd.h" # 329 "/usr/include/unistd.h" # 331 "/usr/include/unistd.h" extern __off_t lseek ( int __fd , __off_t __offset , int __whence ) ; # 349 "/usr/include/unistd.h" extern int close ( int __fd ) ; # 356 "/usr/include/unistd.h" extern ssize_t read ( int __fd , void * __buf , size_t __nbytes ) ; # 362 "/usr/include/unistd.h" extern ssize_t write ( int __fd , const void * __buf , size_t __n ) ; # 413 "/usr/include/unistd.h" extern int pipe ( int __pipedes [ 2 ] ) ; # 428 "/usr/include/unistd.h" extern unsigned int alarm ( unsigned int __seconds ) ; # 440 "/usr/include/unistd.h" extern unsigned int sleep ( unsigned int __seconds ) ; # 447 "/usr/include/unistd.h" extern __useconds_t ualarm ( __useconds_t __value , __useconds_t __interval ) ; # 455 "/usr/include/unistd.h" extern int usleep ( __useconds_t __useconds ) ; # 464 "/usr/include/unistd.h" extern int pause ( void ) ; # 468 "/usr/include/unistd.h" extern int chown ( const char * __file , __uid_t __owner , __gid_t __group ) ; # 473 "/usr/include/unistd.h" extern int fchown ( int __fd , __uid_t __owner , __gid_t __group ) ; # 478 "/usr/include/unistd.h" extern int lchown ( const char * __file , __uid_t __owner , __gid_t __group ) ; # 486 "/usr/include/unistd.h" extern int fchownat ( int __fd , const char * __file , __uid_t __owner , __gid_t __group , int __flag ) ; # 492 "/usr/include/unistd.h" extern int chdir ( const char * __path ) ; # 496 "/usr/include/unistd.h" extern int fchdir ( int __fd ) ; # 506 "/usr/include/unistd.h" extern char * getcwd ( char * __buf , size_t __size ) ; # 519 "/usr/include/unistd.h" extern char * getwd ( char * __buf ) ; # 525 "/usr/include/unistd.h" extern int dup ( int __fd ) ; # 528 "/usr/include/unistd.h" extern int dup2 ( int __fd , int __fd2 ) ; # 537 "/usr/include/unistd.h" extern char * * __environ ; # 545 "/usr/include/unistd.h" extern int execve ( const char * __path , char * const __argv [ ] , char * const __envp [ ] ) ; # 551 "/usr/include/unistd.h" extern int fexecve ( int __fd , char * const __argv [ ] , char * const __envp [ ] ) ; # 557 "/usr/include/unistd.h" extern int execv ( const char * __path , char * const __argv [ ] ) ; # 562 "/usr/include/unistd.h" extern int execle ( const char * __path , const char * __arg , ... ) ; # 567 "/usr/include/unistd.h" extern int execl ( const char * __path , const char * __arg , ... ) ; # 572 "/usr/include/unistd.h" extern int execvp ( const char * __file , char * const __argv [ ] ) ; # 578 "/usr/include/unistd.h" extern int execlp ( const char * __file , const char * __arg , ... ) ; # 592 "/usr/include/unistd.h" extern int nice ( int __inc ) ; # 597 "/usr/include/unistd.h" extern void _exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 603 "/usr/include/unistd.h" # 1 "/usr/include/bits/confname.h" # 19 "/usr/include/bits/confname.h" # 25 "/usr/include/bits/confname.h" enum { _PC_LINK_MAX , # 30 "/usr/include/bits/confname.h" _PC_MAX_CANON , # 32 "/usr/include/bits/confname.h" _PC_MAX_INPUT , # 34 "/usr/include/bits/confname.h" _PC_NAME_MAX , # 36 "/usr/include/bits/confname.h" _PC_PATH_MAX , # 38 "/usr/include/bits/confname.h" _PC_PIPE_BUF , # 40 "/usr/include/bits/confname.h" _PC_CHOWN_RESTRICTED , # 42 "/usr/include/bits/confname.h" _PC_NO_TRUNC , # 44 "/usr/include/bits/confname.h" _PC_VDISABLE , # 46 "/usr/include/bits/confname.h" _PC_SYNC_IO , # 48 "/usr/include/bits/confname.h" _PC_ASYNC_IO , # 50 "/usr/include/bits/confname.h" _PC_PRIO_IO , # 52 "/usr/include/bits/confname.h" _PC_SOCK_MAXBUF , # 54 "/usr/include/bits/confname.h" _PC_FILESIZEBITS , # 56 "/usr/include/bits/confname.h" _PC_REC_INCR_XFER_SIZE , # 58 "/usr/include/bits/confname.h" _PC_REC_MAX_XFER_SIZE , # 60 "/usr/include/bits/confname.h" _PC_REC_MIN_XFER_SIZE , # 62 "/usr/include/bits/confname.h" _PC_REC_XFER_ALIGN , # 64 "/usr/include/bits/confname.h" _PC_ALLOC_SIZE_MIN , # 66 "/usr/include/bits/confname.h" _PC_SYMLINK_MAX , # 68 "/usr/include/bits/confname.h" _PC_2_SYMLINKS # 70 "/usr/include/bits/confname.h" } ; # 72 "/usr/include/bits/confname.h" enum { _SC_ARG_MAX , # 77 "/usr/include/bits/confname.h" _SC_CHILD_MAX , # 79 "/usr/include/bits/confname.h" _SC_CLK_TCK , # 81 "/usr/include/bits/confname.h" _SC_NGROUPS_MAX , # 83 "/usr/include/bits/confname.h" _SC_OPEN_MAX , # 85 "/usr/include/bits/confname.h" _SC_STREAM_MAX , # 87 "/usr/include/bits/confname.h" _SC_TZNAME_MAX , # 89 "/usr/include/bits/confname.h" _SC_JOB_CONTROL , # 91 "/usr/include/bits/confname.h" _SC_SAVED_IDS , # 93 "/usr/include/bits/confname.h" _SC_REALTIME_SIGNALS , # 95 "/usr/include/bits/confname.h" _SC_PRIORITY_SCHEDULING , # 97 "/usr/include/bits/confname.h" _SC_TIMERS , # 99 "/usr/include/bits/confname.h" _SC_ASYNCHRONOUS_IO , # 101 "/usr/include/bits/confname.h" _SC_PRIORITIZED_IO , # 103 "/usr/include/bits/confname.h" _SC_SYNCHRONIZED_IO , # 105 "/usr/include/bits/confname.h" _SC_FSYNC , # 107 "/usr/include/bits/confname.h" _SC_MAPPED_FILES , # 109 "/usr/include/bits/confname.h" _SC_MEMLOCK , # 111 "/usr/include/bits/confname.h" _SC_MEMLOCK_RANGE , # 113 "/usr/include/bits/confname.h" _SC_MEMORY_PROTECTION , # 115 "/usr/include/bits/confname.h" _SC_MESSAGE_PASSING , # 117 "/usr/include/bits/confname.h" _SC_SEMAPHORES , # 119 "/usr/include/bits/confname.h" _SC_SHARED_MEMORY_OBJECTS , # 121 "/usr/include/bits/confname.h" _SC_AIO_LISTIO_MAX , # 123 "/usr/include/bits/confname.h" _SC_AIO_MAX , # 125 "/usr/include/bits/confname.h" _SC_AIO_PRIO_DELTA_MAX , # 127 "/usr/include/bits/confname.h" _SC_DELAYTIMER_MAX , # 129 "/usr/include/bits/confname.h" _SC_MQ_OPEN_MAX , # 131 "/usr/include/bits/confname.h" _SC_MQ_PRIO_MAX , # 133 "/usr/include/bits/confname.h" _SC_VERSION , # 135 "/usr/include/bits/confname.h" _SC_PAGESIZE , # 138 "/usr/include/bits/confname.h" _SC_RTSIG_MAX , # 140 "/usr/include/bits/confname.h" _SC_SEM_NSEMS_MAX , # 142 "/usr/include/bits/confname.h" _SC_SEM_VALUE_MAX , # 144 "/usr/include/bits/confname.h" _SC_SIGQUEUE_MAX , # 146 "/usr/include/bits/confname.h" _SC_TIMER_MAX , # 149 "/usr/include/bits/confname.h" _SC_BC_BASE_MAX , # 153 "/usr/include/bits/confname.h" _SC_BC_DIM_MAX , # 155 "/usr/include/bits/confname.h" _SC_BC_SCALE_MAX , # 157 "/usr/include/bits/confname.h" _SC_BC_STRING_MAX , # 159 "/usr/include/bits/confname.h" _SC_COLL_WEIGHTS_MAX , # 161 "/usr/include/bits/confname.h" _SC_EQUIV_CLASS_MAX , # 163 "/usr/include/bits/confname.h" _SC_EXPR_NEST_MAX , # 165 "/usr/include/bits/confname.h" _SC_LINE_MAX , # 167 "/usr/include/bits/confname.h" _SC_RE_DUP_MAX , # 169 "/usr/include/bits/confname.h" _SC_CHARCLASS_NAME_MAX , # 172 "/usr/include/bits/confname.h" _SC_2_VERSION , # 174 "/usr/include/bits/confname.h" _SC_2_C_BIND , # 176 "/usr/include/bits/confname.h" _SC_2_C_DEV , # 178 "/usr/include/bits/confname.h" _SC_2_FORT_DEV , # 180 "/usr/include/bits/confname.h" _SC_2_FORT_RUN , # 182 "/usr/include/bits/confname.h" _SC_2_SW_DEV , # 184 "/usr/include/bits/confname.h" _SC_2_LOCALEDEF , # 187 "/usr/include/bits/confname.h" _SC_PII , # 189 "/usr/include/bits/confname.h" _SC_PII_XTI , # 191 "/usr/include/bits/confname.h" _SC_PII_SOCKET , # 193 "/usr/include/bits/confname.h" _SC_PII_INTERNET , # 195 "/usr/include/bits/confname.h" _SC_PII_OSI , # 197 "/usr/include/bits/confname.h" _SC_POLL , # 199 "/usr/include/bits/confname.h" _SC_SELECT , # 201 "/usr/include/bits/confname.h" _SC_UIO_MAXIOV , # 203 "/usr/include/bits/confname.h" _SC_IOV_MAX = _SC_UIO_MAXIOV , # 205 "/usr/include/bits/confname.h" _SC_PII_INTERNET_STREAM , # 207 "/usr/include/bits/confname.h" _SC_PII_INTERNET_DGRAM , # 209 "/usr/include/bits/confname.h" _SC_PII_OSI_COTS , # 211 "/usr/include/bits/confname.h" _SC_PII_OSI_CLTS , # 213 "/usr/include/bits/confname.h" _SC_PII_OSI_M , # 215 "/usr/include/bits/confname.h" _SC_T_IOV_MAX , # 218 "/usr/include/bits/confname.h" _SC_THREADS , # 221 "/usr/include/bits/confname.h" _SC_THREAD_SAFE_FUNCTIONS , # 223 "/usr/include/bits/confname.h" _SC_GETGR_R_SIZE_MAX , # 225 "/usr/include/bits/confname.h" _SC_GETPW_R_SIZE_MAX , # 227 "/usr/include/bits/confname.h" _SC_LOGIN_NAME_MAX , # 229 "/usr/include/bits/confname.h" _SC_TTY_NAME_MAX , # 231 "/usr/include/bits/confname.h" _SC_THREAD_DESTRUCTOR_ITERATIONS , # 233 "/usr/include/bits/confname.h" _SC_THREAD_KEYS_MAX , # 235 "/usr/include/bits/confname.h" _SC_THREAD_STACK_MIN , # 237 "/usr/include/bits/confname.h" _SC_THREAD_THREADS_MAX , # 239 "/usr/include/bits/confname.h" _SC_THREAD_ATTR_STACKADDR , # 241 "/usr/include/bits/confname.h" _SC_THREAD_ATTR_STACKSIZE , # 243 "/usr/include/bits/confname.h" _SC_THREAD_PRIORITY_SCHEDULING , # 245 "/usr/include/bits/confname.h" _SC_THREAD_PRIO_INHERIT , # 247 "/usr/include/bits/confname.h" _SC_THREAD_PRIO_PROTECT , # 249 "/usr/include/bits/confname.h" _SC_THREAD_PROCESS_SHARED , # 252 "/usr/include/bits/confname.h" _SC_NPROCESSORS_CONF , # 254 "/usr/include/bits/confname.h" _SC_NPROCESSORS_ONLN , # 256 "/usr/include/bits/confname.h" _SC_PHYS_PAGES , # 258 "/usr/include/bits/confname.h" _SC_AVPHYS_PAGES , # 260 "/usr/include/bits/confname.h" _SC_ATEXIT_MAX , # 262 "/usr/include/bits/confname.h" _SC_PASS_MAX , # 265 "/usr/include/bits/confname.h" _SC_XOPEN_VERSION , # 267 "/usr/include/bits/confname.h" _SC_XOPEN_XCU_VERSION , # 269 "/usr/include/bits/confname.h" _SC_XOPEN_UNIX , # 271 "/usr/include/bits/confname.h" _SC_XOPEN_CRYPT , # 273 "/usr/include/bits/confname.h" _SC_XOPEN_ENH_I18N , # 275 "/usr/include/bits/confname.h" _SC_XOPEN_SHM , # 278 "/usr/include/bits/confname.h" _SC_2_CHAR_TERM , # 280 "/usr/include/bits/confname.h" _SC_2_C_VERSION , # 282 "/usr/include/bits/confname.h" _SC_2_UPE , # 285 "/usr/include/bits/confname.h" _SC_XOPEN_XPG2 , # 287 "/usr/include/bits/confname.h" _SC_XOPEN_XPG3 , # 289 "/usr/include/bits/confname.h" _SC_XOPEN_XPG4 , # 292 "/usr/include/bits/confname.h" _SC_CHAR_BIT , # 294 "/usr/include/bits/confname.h" _SC_CHAR_MAX , # 296 "/usr/include/bits/confname.h" _SC_CHAR_MIN , # 298 "/usr/include/bits/confname.h" _SC_INT_MAX , # 300 "/usr/include/bits/confname.h" _SC_INT_MIN , # 302 "/usr/include/bits/confname.h" _SC_LONG_BIT , # 304 "/usr/include/bits/confname.h" _SC_WORD_BIT , # 306 "/usr/include/bits/confname.h" _SC_MB_LEN_MAX , # 308 "/usr/include/bits/confname.h" _SC_NZERO , # 310 "/usr/include/bits/confname.h" _SC_SSIZE_MAX , # 312 "/usr/include/bits/confname.h" _SC_SCHAR_MAX , # 314 "/usr/include/bits/confname.h" _SC_SCHAR_MIN , # 316 "/usr/include/bits/confname.h" _SC_SHRT_MAX , # 318 "/usr/include/bits/confname.h" _SC_SHRT_MIN , # 320 "/usr/include/bits/confname.h" _SC_UCHAR_MAX , # 322 "/usr/include/bits/confname.h" _SC_UINT_MAX , # 324 "/usr/include/bits/confname.h" _SC_ULONG_MAX , # 326 "/usr/include/bits/confname.h" _SC_USHRT_MAX , # 329 "/usr/include/bits/confname.h" _SC_NL_ARGMAX , # 331 "/usr/include/bits/confname.h" _SC_NL_LANGMAX , # 333 "/usr/include/bits/confname.h" _SC_NL_MSGMAX , # 335 "/usr/include/bits/confname.h" _SC_NL_NMAX , # 337 "/usr/include/bits/confname.h" _SC_NL_SETMAX , # 339 "/usr/include/bits/confname.h" _SC_NL_TEXTMAX , # 342 "/usr/include/bits/confname.h" _SC_XBS5_ILP32_OFF32 , # 344 "/usr/include/bits/confname.h" _SC_XBS5_ILP32_OFFBIG , # 346 "/usr/include/bits/confname.h" _SC_XBS5_LP64_OFF64 , # 348 "/usr/include/bits/confname.h" _SC_XBS5_LPBIG_OFFBIG , # 351 "/usr/include/bits/confname.h" _SC_XOPEN_LEGACY , # 353 "/usr/include/bits/confname.h" _SC_XOPEN_REALTIME , # 355 "/usr/include/bits/confname.h" _SC_XOPEN_REALTIME_THREADS , # 358 "/usr/include/bits/confname.h" _SC_ADVISORY_INFO , # 360 "/usr/include/bits/confname.h" _SC_BARRIERS , # 362 "/usr/include/bits/confname.h" _SC_BASE , # 364 "/usr/include/bits/confname.h" _SC_C_LANG_SUPPORT , # 366 "/usr/include/bits/confname.h" _SC_C_LANG_SUPPORT_R , # 368 "/usr/include/bits/confname.h" _SC_CLOCK_SELECTION , # 370 "/usr/include/bits/confname.h" _SC_CPUTIME , # 372 "/usr/include/bits/confname.h" _SC_THREAD_CPUTIME , # 374 "/usr/include/bits/confname.h" _SC_DEVICE_IO , # 376 "/usr/include/bits/confname.h" _SC_DEVICE_SPECIFIC , # 378 "/usr/include/bits/confname.h" _SC_DEVICE_SPECIFIC_R , # 380 "/usr/include/bits/confname.h" _SC_FD_MGMT , # 382 "/usr/include/bits/confname.h" _SC_FIFO , # 384 "/usr/include/bits/confname.h" _SC_PIPE , # 386 "/usr/include/bits/confname.h" _SC_FILE_ATTRIBUTES , # 388 "/usr/include/bits/confname.h" _SC_FILE_LOCKING , # 390 "/usr/include/bits/confname.h" _SC_FILE_SYSTEM , # 392 "/usr/include/bits/confname.h" _SC_MONOTONIC_CLOCK , # 394 "/usr/include/bits/confname.h" _SC_MULTI_PROCESS , # 396 "/usr/include/bits/confname.h" _SC_SINGLE_PROCESS , # 398 "/usr/include/bits/confname.h" _SC_NETWORKING , # 400 "/usr/include/bits/confname.h" _SC_READER_WRITER_LOCKS , # 402 "/usr/include/bits/confname.h" _SC_SPIN_LOCKS , # 404 "/usr/include/bits/confname.h" _SC_REGEXP , # 406 "/usr/include/bits/confname.h" _SC_REGEX_VERSION , # 408 "/usr/include/bits/confname.h" _SC_SHELL , # 410 "/usr/include/bits/confname.h" _SC_SIGNALS , # 412 "/usr/include/bits/confname.h" _SC_SPAWN , # 414 "/usr/include/bits/confname.h" _SC_SPORADIC_SERVER , # 416 "/usr/include/bits/confname.h" _SC_THREAD_SPORADIC_SERVER , # 418 "/usr/include/bits/confname.h" _SC_SYSTEM_DATABASE , # 420 "/usr/include/bits/confname.h" _SC_SYSTEM_DATABASE_R , # 422 "/usr/include/bits/confname.h" _SC_TIMEOUTS , # 424 "/usr/include/bits/confname.h" _SC_TYPED_MEMORY_OBJECTS , # 426 "/usr/include/bits/confname.h" _SC_USER_GROUPS , # 428 "/usr/include/bits/confname.h" _SC_USER_GROUPS_R , # 430 "/usr/include/bits/confname.h" _SC_2_PBS , # 432 "/usr/include/bits/confname.h" _SC_2_PBS_ACCOUNTING , # 434 "/usr/include/bits/confname.h" _SC_2_PBS_LOCATE , # 436 "/usr/include/bits/confname.h" _SC_2_PBS_MESSAGE , # 438 "/usr/include/bits/confname.h" _SC_2_PBS_TRACK , # 440 "/usr/include/bits/confname.h" _SC_SYMLOOP_MAX , # 442 "/usr/include/bits/confname.h" _SC_STREAMS , # 444 "/usr/include/bits/confname.h" _SC_2_PBS_CHECKPOINT , # 447 "/usr/include/bits/confname.h" _SC_V6_ILP32_OFF32 , # 449 "/usr/include/bits/confname.h" _SC_V6_ILP32_OFFBIG , # 451 "/usr/include/bits/confname.h" _SC_V6_LP64_OFF64 , # 453 "/usr/include/bits/confname.h" _SC_V6_LPBIG_OFFBIG , # 456 "/usr/include/bits/confname.h" _SC_HOST_NAME_MAX , # 458 "/usr/include/bits/confname.h" _SC_TRACE , # 460 "/usr/include/bits/confname.h" _SC_TRACE_EVENT_FILTER , # 462 "/usr/include/bits/confname.h" _SC_TRACE_INHERIT , # 464 "/usr/include/bits/confname.h" _SC_TRACE_LOG , # 467 "/usr/include/bits/confname.h" _SC_LEVEL1_ICACHE_SIZE , # 469 "/usr/include/bits/confname.h" _SC_LEVEL1_ICACHE_ASSOC , # 471 "/usr/include/bits/confname.h" _SC_LEVEL1_ICACHE_LINESIZE , # 473 "/usr/include/bits/confname.h" _SC_LEVEL1_DCACHE_SIZE , # 475 "/usr/include/bits/confname.h" _SC_LEVEL1_DCACHE_ASSOC , # 477 "/usr/include/bits/confname.h" _SC_LEVEL1_DCACHE_LINESIZE , # 479 "/usr/include/bits/confname.h" _SC_LEVEL2_CACHE_SIZE , # 481 "/usr/include/bits/confname.h" _SC_LEVEL2_CACHE_ASSOC , # 483 "/usr/include/bits/confname.h" _SC_LEVEL2_CACHE_LINESIZE , # 485 "/usr/include/bits/confname.h" _SC_LEVEL3_CACHE_SIZE , # 487 "/usr/include/bits/confname.h" _SC_LEVEL3_CACHE_ASSOC , # 489 "/usr/include/bits/confname.h" _SC_LEVEL3_CACHE_LINESIZE , # 491 "/usr/include/bits/confname.h" _SC_LEVEL4_CACHE_SIZE , # 493 "/usr/include/bits/confname.h" _SC_LEVEL4_CACHE_ASSOC , # 495 "/usr/include/bits/confname.h" _SC_LEVEL4_CACHE_LINESIZE , # 497 "/usr/include/bits/confname.h" # 499 "/usr/include/bits/confname.h" _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50 , # 501 "/usr/include/bits/confname.h" _SC_RAW_SOCKETS , # 504 "/usr/include/bits/confname.h" _SC_V7_ILP32_OFF32 , # 506 "/usr/include/bits/confname.h" _SC_V7_ILP32_OFFBIG , # 508 "/usr/include/bits/confname.h" _SC_V7_LP64_OFF64 , # 510 "/usr/include/bits/confname.h" _SC_V7_LPBIG_OFFBIG , # 513 "/usr/include/bits/confname.h" _SC_SS_REPL_MAX , # 516 "/usr/include/bits/confname.h" _SC_TRACE_EVENT_NAME_MAX , # 518 "/usr/include/bits/confname.h" _SC_TRACE_NAME_MAX , # 520 "/usr/include/bits/confname.h" _SC_TRACE_SYS_MAX , # 522 "/usr/include/bits/confname.h" _SC_TRACE_USER_EVENT_MAX , # 525 "/usr/include/bits/confname.h" _SC_XOPEN_STREAMS , # 528 "/usr/include/bits/confname.h" _SC_THREAD_ROBUST_PRIO_INHERIT , # 530 "/usr/include/bits/confname.h" _SC_THREAD_ROBUST_PRIO_PROTECT # 532 "/usr/include/bits/confname.h" } ; # 534 "/usr/include/bits/confname.h" enum { _CS_PATH , # 540 "/usr/include/bits/confname.h" _CS_V6_WIDTH_RESTRICTED_ENVS , # 544 "/usr/include/bits/confname.h" _CS_GNU_LIBC_VERSION , # 546 "/usr/include/bits/confname.h" _CS_GNU_LIBPTHREAD_VERSION , # 549 "/usr/include/bits/confname.h" _CS_V5_WIDTH_RESTRICTED_ENVS , # 553 "/usr/include/bits/confname.h" _CS_V7_WIDTH_RESTRICTED_ENVS , # 557 "/usr/include/bits/confname.h" _CS_LFS_CFLAGS = 1000 , # 559 "/usr/include/bits/confname.h" _CS_LFS_LDFLAGS , # 561 "/usr/include/bits/confname.h" _CS_LFS_LIBS , # 563 "/usr/include/bits/confname.h" _CS_LFS_LINTFLAGS , # 565 "/usr/include/bits/confname.h" _CS_LFS64_CFLAGS , # 567 "/usr/include/bits/confname.h" _CS_LFS64_LDFLAGS , # 569 "/usr/include/bits/confname.h" _CS_LFS64_LIBS , # 571 "/usr/include/bits/confname.h" _CS_LFS64_LINTFLAGS , # 574 "/usr/include/bits/confname.h" _CS_XBS5_ILP32_OFF32_CFLAGS = 1100 , # 576 "/usr/include/bits/confname.h" _CS_XBS5_ILP32_OFF32_LDFLAGS , # 578 "/usr/include/bits/confname.h" _CS_XBS5_ILP32_OFF32_LIBS , # 580 "/usr/include/bits/confname.h" _CS_XBS5_ILP32_OFF32_LINTFLAGS , # 582 "/usr/include/bits/confname.h" _CS_XBS5_ILP32_OFFBIG_CFLAGS , # 584 "/usr/include/bits/confname.h" _CS_XBS5_ILP32_OFFBIG_LDFLAGS , # 586 "/usr/include/bits/confname.h" _CS_XBS5_ILP32_OFFBIG_LIBS , # 588 "/usr/include/bits/confname.h" _CS_XBS5_ILP32_OFFBIG_LINTFLAGS , # 590 "/usr/include/bits/confname.h" _CS_XBS5_LP64_OFF64_CFLAGS , # 592 "/usr/include/bits/confname.h" _CS_XBS5_LP64_OFF64_LDFLAGS , # 594 "/usr/include/bits/confname.h" _CS_XBS5_LP64_OFF64_LIBS , # 596 "/usr/include/bits/confname.h" _CS_XBS5_LP64_OFF64_LINTFLAGS , # 598 "/usr/include/bits/confname.h" _CS_XBS5_LPBIG_OFFBIG_CFLAGS , # 600 "/usr/include/bits/confname.h" _CS_XBS5_LPBIG_OFFBIG_LDFLAGS , # 602 "/usr/include/bits/confname.h" _CS_XBS5_LPBIG_OFFBIG_LIBS , # 604 "/usr/include/bits/confname.h" _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS , # 607 "/usr/include/bits/confname.h" _CS_POSIX_V6_ILP32_OFF32_CFLAGS , # 609 "/usr/include/bits/confname.h" _CS_POSIX_V6_ILP32_OFF32_LDFLAGS , # 611 "/usr/include/bits/confname.h" _CS_POSIX_V6_ILP32_OFF32_LIBS , # 613 "/usr/include/bits/confname.h" _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS , # 615 "/usr/include/bits/confname.h" _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS , # 617 "/usr/include/bits/confname.h" _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS , # 619 "/usr/include/bits/confname.h" _CS_POSIX_V6_ILP32_OFFBIG_LIBS , # 621 "/usr/include/bits/confname.h" _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS , # 623 "/usr/include/bits/confname.h" _CS_POSIX_V6_LP64_OFF64_CFLAGS , # 625 "/usr/include/bits/confname.h" _CS_POSIX_V6_LP64_OFF64_LDFLAGS , # 627 "/usr/include/bits/confname.h" _CS_POSIX_V6_LP64_OFF64_LIBS , # 629 "/usr/include/bits/confname.h" _CS_POSIX_V6_LP64_OFF64_LINTFLAGS , # 631 "/usr/include/bits/confname.h" _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS , # 633 "/usr/include/bits/confname.h" _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS , # 635 "/usr/include/bits/confname.h" _CS_POSIX_V6_LPBIG_OFFBIG_LIBS , # 637 "/usr/include/bits/confname.h" _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS , # 640 "/usr/include/bits/confname.h" _CS_POSIX_V7_ILP32_OFF32_CFLAGS , # 642 "/usr/include/bits/confname.h" _CS_POSIX_V7_ILP32_OFF32_LDFLAGS , # 644 "/usr/include/bits/confname.h" _CS_POSIX_V7_ILP32_OFF32_LIBS , # 646 "/usr/include/bits/confname.h" _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS , # 648 "/usr/include/bits/confname.h" _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS , # 650 "/usr/include/bits/confname.h" _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS , # 652 "/usr/include/bits/confname.h" _CS_POSIX_V7_ILP32_OFFBIG_LIBS , # 654 "/usr/include/bits/confname.h" _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS , # 656 "/usr/include/bits/confname.h" _CS_POSIX_V7_LP64_OFF64_CFLAGS , # 658 "/usr/include/bits/confname.h" _CS_POSIX_V7_LP64_OFF64_LDFLAGS , # 660 "/usr/include/bits/confname.h" _CS_POSIX_V7_LP64_OFF64_LIBS , # 662 "/usr/include/bits/confname.h" _CS_POSIX_V7_LP64_OFF64_LINTFLAGS , # 664 "/usr/include/bits/confname.h" _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS , # 666 "/usr/include/bits/confname.h" _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS , # 668 "/usr/include/bits/confname.h" _CS_POSIX_V7_LPBIG_OFFBIG_LIBS , # 670 "/usr/include/bits/confname.h" _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS # 672 "/usr/include/bits/confname.h" } ; # 605 "/usr/include/unistd.h" # 606 "/usr/include/unistd.h" extern long int pathconf ( const char * __path , int __name ) ; # 610 "/usr/include/unistd.h" extern long int fpathconf ( int __fd , int __name ) ; # 613 "/usr/include/unistd.h" extern long int sysconf ( int __name ) ; # 617 "/usr/include/unistd.h" extern size_t confstr ( int __name , char * __buf , size_t __len ) ; # 622 "/usr/include/unistd.h" extern __pid_t getpid ( void ) ; # 625 "/usr/include/unistd.h" extern __pid_t getppid ( void ) ; # 629 "/usr/include/unistd.h" # 631 "/usr/include/unistd.h" extern __pid_t getpgrp ( void ) ; # 640 "/usr/include/unistd.h" extern __pid_t __getpgid ( __pid_t __pid ) ; # 649 "/usr/include/unistd.h" extern int setpgid ( __pid_t __pid , __pid_t __pgid ) ; # 661 "/usr/include/unistd.h" # 666 "/usr/include/unistd.h" extern int setpgrp ( void ) ; # 683 "/usr/include/unistd.h" extern __pid_t setsid ( void ) ; # 691 "/usr/include/unistd.h" extern __uid_t getuid ( void ) ; # 694 "/usr/include/unistd.h" extern __uid_t geteuid ( void ) ; # 697 "/usr/include/unistd.h" extern __gid_t getgid ( void ) ; # 700 "/usr/include/unistd.h" extern __gid_t getegid ( void ) ; # 705 "/usr/include/unistd.h" extern int getgroups ( int __size , __gid_t __list [ ] ) ; # 716 "/usr/include/unistd.h" extern int setuid ( __uid_t __uid ) ; # 721 "/usr/include/unistd.h" extern int setreuid ( __uid_t __ruid , __uid_t __euid ) ; # 726 "/usr/include/unistd.h" extern int seteuid ( __uid_t __uid ) ; # 733 "/usr/include/unistd.h" extern int setgid ( __gid_t __gid ) ; # 738 "/usr/include/unistd.h" extern int setregid ( __gid_t __rgid , __gid_t __egid ) ; # 743 "/usr/include/unistd.h" extern int setegid ( __gid_t __gid ) ; # 772 "/usr/include/unistd.h" extern __pid_t fork ( void ) ; # 779 "/usr/include/unistd.h" extern __pid_t vfork ( void ) ; # 785 "/usr/include/unistd.h" extern char * ttyname ( int __fd ) ; # 789 "/usr/include/unistd.h" extern int ttyname_r ( int __fd , char * __buf , size_t __buflen ) ; # 794 "/usr/include/unistd.h" extern int isatty ( int __fd ) ; # 800 "/usr/include/unistd.h" extern int ttyslot ( void ) ; # 805 "/usr/include/unistd.h" extern int link ( const char * __from , const char * __to ) ; # 811 "/usr/include/unistd.h" extern int linkat ( int __fromfd , const char * __from , int __tofd , const char * __to , int __flags ) ; # 818 "/usr/include/unistd.h" extern int symlink ( const char * __from , const char * __to ) ; # 824 "/usr/include/unistd.h" extern ssize_t readlink ( const char * __restrict __path , char * __restrict __buf , size_t __len ) ; # 831 "/usr/include/unistd.h" extern int symlinkat ( const char * __from , int __tofd , const char * __to ) ; # 835 "/usr/include/unistd.h" extern ssize_t readlinkat ( int __fd , const char * __restrict __path , char * __restrict __buf , size_t __len ) ; # 841 "/usr/include/unistd.h" extern int unlink ( const char * __name ) ; # 845 "/usr/include/unistd.h" extern int unlinkat ( int __fd , const char * __name , int __flag ) ; # 850 "/usr/include/unistd.h" extern int rmdir ( const char * __path ) ; # 854 "/usr/include/unistd.h" extern __pid_t tcgetpgrp ( int __fd ) ; # 857 "/usr/include/unistd.h" extern int tcsetpgrp ( int __fd , __pid_t __pgrp_id ) ; # 864 "/usr/include/unistd.h" extern char * getlogin ( void ) ; # 872 "/usr/include/unistd.h" extern int getlogin_r ( char * __name , size_t __name_len ) ; # 877 "/usr/include/unistd.h" extern int setlogin ( const char * __name ) ; # 885 "/usr/include/unistd.h" # 1 "/usr/include/getopt.h" # 19 "/usr/include/getopt.h" # 33 "/usr/include/getopt.h" # 57 "/usr/include/getopt.h" # 59 "/usr/include/getopt.h" extern char * optarg ; # 71 "/usr/include/getopt.h" # 73 "/usr/include/getopt.h" extern int optind ; # 76 "/usr/include/getopt.h" # 78 "/usr/include/getopt.h" extern int opterr ; # 80 "/usr/include/getopt.h" # 82 "/usr/include/getopt.h" extern int optopt ; # 146 "/usr/include/getopt.h" # 151 "/usr/include/getopt.h" extern int getopt ( int ___argc , char * const * ___argv , const char * __shortopts ) ; # 190 "/usr/include/getopt.h" # 888 "/usr/include/unistd.h" # 894 "/usr/include/unistd.h" extern int gethostname ( char * __name , size_t __len ) ; # 901 "/usr/include/unistd.h" extern int sethostname ( const char * __name , size_t __len ) ; # 906 "/usr/include/unistd.h" extern int sethostid ( long int __id ) ; # 912 "/usr/include/unistd.h" extern int getdomainname ( char * __name , size_t __len ) ; extern int setdomainname ( const char * __name , size_t __len ) ; # 921 "/usr/include/unistd.h" extern int vhangup ( void ) ; # 924 "/usr/include/unistd.h" extern int revoke ( const char * __file ) ; # 932 "/usr/include/unistd.h" extern int profil ( unsigned short int * __sample_buffer , size_t __size , size_t __offset , unsigned int __scale ) ; # 940 "/usr/include/unistd.h" extern int acct ( const char * __name ) ; # 944 "/usr/include/unistd.h" extern char * getusershell ( void ) ; extern void endusershell ( void ) ; extern void setusershell ( void ) ; # 952 "/usr/include/unistd.h" extern int daemon ( int __nochdir , int __noclose ) ; # 959 "/usr/include/unistd.h" extern int chroot ( const char * __path ) ; # 963 "/usr/include/unistd.h" extern char * getpass ( const char * __prompt ) ; # 972 "/usr/include/unistd.h" extern int fsync ( int __fd ) ; # 979 "/usr/include/unistd.h" extern long int gethostid ( void ) ; # 982 "/usr/include/unistd.h" extern void sync ( void ) ; # 987 "/usr/include/unistd.h" extern int getpagesize ( void ) __attribute__ ( ( __const__ ) ) ; # 992 "/usr/include/unistd.h" extern int getdtablesize ( void ) ; # 996 "/usr/include/unistd.h" # 998 "/usr/include/unistd.h" extern int truncate ( const char * __file , __off_t __length ) ; # 1018 "/usr/include/unistd.h" # 1020 "/usr/include/unistd.h" extern int ftruncate ( int __fd , __off_t __length ) ; # 1039 "/usr/include/unistd.h" extern int brk ( void * __addr ) ; # 1045 "/usr/include/unistd.h" extern void * sbrk ( intptr_t __delta ) ; # 1060 "/usr/include/unistd.h" extern long int syscall ( long int __sysno , ... ) ; # 1069 "/usr/include/unistd.h" # 1076 "/usr/include/unistd.h" # 1084 "/usr/include/unistd.h" extern int lockf ( int __fd , int __cmd , __off_t __len ) ; # 1114 "/usr/include/unistd.h" extern int fdatasync ( int __fildes ) ; # 1120 "/usr/include/unistd.h" # 1141 "/usr/include/unistd.h" # 1148 "/usr/include/unistd.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/netinet/in.h" # 18 "/usr/include/netinet/in.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/netinet/in.h" # 1 "/usr/include/stdint.h" # 17 "/usr/include/stdint.h" # 21 "/usr/include/stdint.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 27 "/usr/include/stdint.h" # 1 "/usr/include/bits/wchar.h" # 18 "/usr/include/bits/wchar.h" # 28 "/usr/include/stdint.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/stdint.h" # 30 "/usr/include/stdint.h" # 32 "/usr/include/stdint.h" # 34 "/usr/include/stdint.h" # 37 "/usr/include/stdint.h" typedef signed char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 41 "/usr/include/stdint.h" typedef long int int64_t ; # 48 "/usr/include/stdint.h" typedef unsigned char uint8_t ; typedef unsigned short int uint16_t ; # 52 "/usr/include/stdint.h" typedef unsigned int uint32_t ; # 56 "/usr/include/stdint.h" typedef unsigned long int uint64_t ; # 63 "/usr/include/stdint.h" # 65 "/usr/include/stdint.h" typedef signed char int_least8_t ; typedef short int int_least16_t ; typedef int int_least32_t ; # 70 "/usr/include/stdint.h" typedef long int int_least64_t ; # 76 "/usr/include/stdint.h" typedef unsigned char uint_least8_t ; typedef unsigned short int uint_least16_t ; typedef unsigned int uint_least32_t ; # 81 "/usr/include/stdint.h" typedef unsigned long int uint_least64_t ; # 88 "/usr/include/stdint.h" # 90 "/usr/include/stdint.h" typedef signed char int_fast8_t ; # 93 "/usr/include/stdint.h" typedef long int int_fast16_t ; typedef long int int_fast32_t ; typedef long int int_fast64_t ; # 103 "/usr/include/stdint.h" typedef unsigned char uint_fast8_t ; # 106 "/usr/include/stdint.h" typedef unsigned long int uint_fast16_t ; typedef unsigned long int uint_fast32_t ; typedef unsigned long int uint_fast64_t ; # 117 "/usr/include/stdint.h" # 120 "/usr/include/stdint.h" typedef long int intptr_t ; # 123 "/usr/include/stdint.h" typedef unsigned long int uintptr_t ; # 133 "/usr/include/stdint.h" # 135 "/usr/include/stdint.h" typedef long int intmax_t ; typedef unsigned long int uintmax_t ; # 146 "/usr/include/stdint.h" # 157 "/usr/include/stdint.h" # 159 "/usr/include/stdint.h" # 164 "/usr/include/stdint.h" # 170 "/usr/include/stdint.h" # 177 "/usr/include/stdint.h" # 182 "/usr/include/stdint.h" # 188 "/usr/include/stdint.h" # 195 "/usr/include/stdint.h" # 205 "/usr/include/stdint.h" # 216 "/usr/include/stdint.h" # 228 "/usr/include/stdint.h" # 240 "/usr/include/stdint.h" # 242 "/usr/include/stdint.h" # 245 "/usr/include/stdint.h" # 249 "/usr/include/stdint.h" # 251 "/usr/include/stdint.h" # 260 "/usr/include/stdint.h" # 264 "/usr/include/stdint.h" # 271 "/usr/include/stdint.h" # 273 "/usr/include/stdint.h" # 278 "/usr/include/stdint.h" # 286 "/usr/include/stdint.h" # 289 "/usr/include/stdint.h" # 299 "/usr/include/stdint.h" # 309 "/usr/include/stdint.h" # 25 "/usr/include/netinet/in.h" # 1 "/usr/include/sys/socket.h" # 19 "/usr/include/sys/socket.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/socket.h" # 1 "/usr/include/sys/uio.h" # 17 "/usr/include/sys/uio.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/sys/uio.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 25 "/usr/include/sys/uio.h" # 28 "/usr/include/sys/uio.h" # 1 "/usr/include/bits/uio.h" # 17 "/usr/include/bits/uio.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 27 "/usr/include/bits/uio.h" # 31 "/usr/include/bits/uio.h" # 39 "/usr/include/bits/uio.h" # 43 "/usr/include/bits/uio.h" struct iovec { void * iov_base ; size_t iov_len ; } ; # 30 "/usr/include/sys/uio.h" # 39 "/usr/include/sys/uio.h" extern ssize_t readv ( int __fd , const struct iovec * __iovec , int __count ) ; # 50 "/usr/include/sys/uio.h" extern ssize_t writev ( int __fd , const struct iovec * __iovec , int __count ) ; # 65 "/usr/include/sys/uio.h" extern ssize_t preadv ( int __fd , const struct iovec * __iovec , int __count , __off_t __offset ) ; # 77 "/usr/include/sys/uio.h" extern ssize_t pwritev ( int __fd , const struct iovec * __iovec , int __count , __off_t __offset ) ; # 29 "/usr/include/sys/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 31 "/usr/include/sys/socket.h" # 39 "/usr/include/sys/socket.h" # 1 "/usr/include/bits/socket.h" # 19 "/usr/include/bits/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 30 "/usr/include/bits/socket.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 32 "/usr/include/bits/socket.h" # 33 "/usr/include/bits/socket.h" # 35 "/usr/include/bits/socket.h" typedef __socklen_t socklen_t ; # 39 "/usr/include/bits/socket.h" enum __socket_type { SOCK_STREAM = 1 , # 45 "/usr/include/bits/socket.h" SOCK_DGRAM = 2 , # 48 "/usr/include/bits/socket.h" SOCK_RAW = 3 , # 50 "/usr/include/bits/socket.h" SOCK_RDM = 4 , # 52 "/usr/include/bits/socket.h" SOCK_SEQPACKET = 5 , # 55 "/usr/include/bits/socket.h" SOCK_DCCP = 6 , # 57 "/usr/include/bits/socket.h" SOCK_PACKET = 10 , # 59 "/usr/include/bits/socket.h" # 62 "/usr/include/bits/socket.h" # 65 "/usr/include/bits/socket.h" SOCK_CLOEXEC = 02000000 , # 68 "/usr/include/bits/socket.h" SOCK_NONBLOCK = 04000 # 71 "/usr/include/bits/socket.h" } ; # 73 "/usr/include/bits/socket.h" # 116 "/usr/include/bits/socket.h" # 162 "/usr/include/bits/socket.h" # 171 "/usr/include/bits/socket.h" # 174 "/usr/include/bits/socket.h" # 1 "/usr/include/bits/sockaddr.h" # 18 "/usr/include/bits/sockaddr.h" # 22 "/usr/include/bits/sockaddr.h" # 28 "/usr/include/bits/sockaddr.h" typedef unsigned short int sa_family_t ; # 33 "/usr/include/bits/sockaddr.h" # 176 "/usr/include/bits/socket.h" # 177 "/usr/include/bits/socket.h" struct sockaddr { sa_family_t sa_family ; char sa_data [ 14 ] ; } ; # 186 "/usr/include/bits/socket.h" # 191 "/usr/include/bits/socket.h" struct sockaddr_storage { sa_family_t ss_family ; unsigned long int __ss_align ; char __ss_padding [ ( 128 - ( 2 * sizeof ( unsigned long int ) ) ) ] ; } ; # 199 "/usr/include/bits/socket.h" enum { MSG_OOB = 0x01 , # 204 "/usr/include/bits/socket.h" MSG_PEEK = 0x02 , # 206 "/usr/include/bits/socket.h" MSG_DONTROUTE = 0x04 , # 213 "/usr/include/bits/socket.h" MSG_CTRUNC = 0x08 , # 215 "/usr/include/bits/socket.h" MSG_PROXY = 0x10 , # 217 "/usr/include/bits/socket.h" MSG_TRUNC = 0x20 , # 219 "/usr/include/bits/socket.h" MSG_DONTWAIT = 0x40 , # 221 "/usr/include/bits/socket.h" MSG_EOR = 0x80 , # 223 "/usr/include/bits/socket.h" MSG_WAITALL = 0x100 , # 225 "/usr/include/bits/socket.h" MSG_FIN = 0x200 , # 227 "/usr/include/bits/socket.h" MSG_SYN = 0x400 , # 229 "/usr/include/bits/socket.h" MSG_CONFIRM = 0x800 , # 231 "/usr/include/bits/socket.h" MSG_RST = 0x1000 , # 233 "/usr/include/bits/socket.h" MSG_ERRQUEUE = 0x2000 , # 235 "/usr/include/bits/socket.h" MSG_NOSIGNAL = 0x4000 , # 237 "/usr/include/bits/socket.h" MSG_MORE = 0x8000 , # 240 "/usr/include/bits/socket.h" MSG_CMSG_CLOEXEC = 0x40000000 # 242 "/usr/include/bits/socket.h" # 244 "/usr/include/bits/socket.h" } ; # 248 "/usr/include/bits/socket.h" struct msghdr { void * msg_name ; socklen_t msg_namelen ; # 254 "/usr/include/bits/socket.h" struct iovec * msg_iov ; size_t msg_iovlen ; # 257 "/usr/include/bits/socket.h" void * msg_control ; size_t msg_controllen ; # 261 "/usr/include/bits/socket.h" # 263 "/usr/include/bits/socket.h" int msg_flags ; } ; # 266 "/usr/include/bits/socket.h" struct cmsghdr { size_t cmsg_len ; # 273 "/usr/include/bits/socket.h" int cmsg_level ; int cmsg_type ; # 277 "/usr/include/bits/socket.h" unsigned char __cmsg_data [ ] ; # 279 "/usr/include/bits/socket.h" } ; # 281 "/usr/include/bits/socket.h" # 297 "/usr/include/bits/socket.h" extern struct cmsghdr * __cmsg_nxthdr ( struct msghdr * __mhdr , struct cmsghdr * __cmsg ) ; # 323 "/usr/include/bits/socket.h" enum { SCM_RIGHTS = 0x01 # 332 "/usr/include/bits/socket.h" } ; # 344 "/usr/include/bits/socket.h" # 369 "/usr/include/bits/socket.h" # 1 "/usr/include/asm/socket.h" # 1 "/usr/include/asm-generic/socket.h" # 1 "/usr/include/asm/sockios.h" # 1 "/usr/include/asm-generic/sockios.h" # 4 "/usr/include/asm-generic/sockios.h" # 2 "/usr/include/asm/sockios.h" # 5 "/usr/include/asm-generic/socket.h" # 6 "/usr/include/asm-generic/socket.h" # 24 "/usr/include/asm-generic/socket.h" # 35 "/usr/include/asm-generic/socket.h" # 42 "/usr/include/asm-generic/socket.h" # 2 "/usr/include/asm/socket.h" # 371 "/usr/include/bits/socket.h" # 403 "/usr/include/bits/socket.h" struct linger { int l_onoff ; int l_linger ; } ; # 41 "/usr/include/sys/socket.h" # 44 "/usr/include/sys/socket.h" struct osockaddr { unsigned short int sa_family ; unsigned char sa_data [ 14 ] ; } ; # 53 "/usr/include/sys/socket.h" enum { SHUT_RD = 0 , # 58 "/usr/include/sys/socket.h" SHUT_WR , # 60 "/usr/include/sys/socket.h" SHUT_RDWR # 62 "/usr/include/sys/socket.h" } ; # 69 "/usr/include/sys/socket.h" # 104 "/usr/include/sys/socket.h" extern int socket ( int __domain , int __type , int __protocol ) ; # 110 "/usr/include/sys/socket.h" extern int socketpair ( int __domain , int __type , int __protocol , int __fds [ 2 ] ) ; # 114 "/usr/include/sys/socket.h" extern int bind ( int __fd , const struct sockaddr * __addr , socklen_t __len ) ; # 118 "/usr/include/sys/socket.h" extern int getsockname ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __len ) ; # 128 "/usr/include/sys/socket.h" extern int connect ( int __fd , const struct sockaddr * __addr , socklen_t __len ) ; # 132 "/usr/include/sys/socket.h" extern int getpeername ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __len ) ; # 140 "/usr/include/sys/socket.h" extern ssize_t send ( int __fd , const void * __buf , size_t __n , int __flags ) ; # 147 "/usr/include/sys/socket.h" extern ssize_t recv ( int __fd , void * __buf , size_t __n , int __flags ) ; # 154 "/usr/include/sys/socket.h" extern ssize_t sendto ( int __fd , const void * __buf , size_t __n , int __flags , const struct sockaddr * __addr , socklen_t __addr_len ) ; # 165 "/usr/include/sys/socket.h" extern ssize_t recvfrom ( int __fd , void * __restrict __buf , size_t __n , int __flags , struct sockaddr * __restrict __addr , socklen_t * __restrict __addr_len ) ; # 175 "/usr/include/sys/socket.h" extern ssize_t sendmsg ( int __fd , const struct msghdr * __message , int __flags ) ; # 183 "/usr/include/sys/socket.h" extern ssize_t recvmsg ( int __fd , struct msghdr * __message , int __flags ) ; # 189 "/usr/include/sys/socket.h" extern int getsockopt ( int __fd , int __level , int __optname , void * __restrict __optval , socklen_t * __restrict __optlen ) ; # 196 "/usr/include/sys/socket.h" extern int setsockopt ( int __fd , int __level , int __optname , const void * __optval , socklen_t __optlen ) ; # 203 "/usr/include/sys/socket.h" extern int listen ( int __fd , int __n ) ; # 213 "/usr/include/sys/socket.h" extern int accept ( int __fd , struct sockaddr * __restrict __addr , socklen_t * __restrict __addr_len ) ; # 231 "/usr/include/sys/socket.h" extern int shutdown ( int __fd , int __how ) ; # 236 "/usr/include/sys/socket.h" extern int sockatmark ( int __fd ) ; # 244 "/usr/include/sys/socket.h" extern int isfdtype ( int __fd , int __fdtype ) ; # 249 "/usr/include/sys/socket.h" # 26 "/usr/include/netinet/in.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 27 "/usr/include/netinet/in.h" # 31 "/usr/include/netinet/in.h" enum { IPPROTO_IP = 0 , # 36 "/usr/include/netinet/in.h" IPPROTO_HOPOPTS = 0 , # 38 "/usr/include/netinet/in.h" IPPROTO_ICMP = 1 , # 40 "/usr/include/netinet/in.h" IPPROTO_IGMP = 2 , # 42 "/usr/include/netinet/in.h" IPPROTO_IPIP = 4 , # 44 "/usr/include/netinet/in.h" IPPROTO_TCP = 6 , # 46 "/usr/include/netinet/in.h" IPPROTO_EGP = 8 , # 48 "/usr/include/netinet/in.h" IPPROTO_PUP = 12 , # 50 "/usr/include/netinet/in.h" IPPROTO_UDP = 17 , # 52 "/usr/include/netinet/in.h" IPPROTO_IDP = 22 , # 54 "/usr/include/netinet/in.h" IPPROTO_TP = 29 , # 56 "/usr/include/netinet/in.h" IPPROTO_DCCP = 33 , # 58 "/usr/include/netinet/in.h" IPPROTO_IPV6 = 41 , # 60 "/usr/include/netinet/in.h" IPPROTO_ROUTING = 43 , # 62 "/usr/include/netinet/in.h" IPPROTO_FRAGMENT = 44 , # 64 "/usr/include/netinet/in.h" IPPROTO_RSVP = 46 , # 66 "/usr/include/netinet/in.h" IPPROTO_GRE = 47 , # 68 "/usr/include/netinet/in.h" IPPROTO_ESP = 50 , # 70 "/usr/include/netinet/in.h" IPPROTO_AH = 51 , # 72 "/usr/include/netinet/in.h" IPPROTO_ICMPV6 = 58 , # 74 "/usr/include/netinet/in.h" IPPROTO_NONE = 59 , # 76 "/usr/include/netinet/in.h" IPPROTO_DSTOPTS = 60 , # 78 "/usr/include/netinet/in.h" IPPROTO_MTP = 92 , # 80 "/usr/include/netinet/in.h" IPPROTO_ENCAP = 98 , # 82 "/usr/include/netinet/in.h" IPPROTO_PIM = 103 , # 84 "/usr/include/netinet/in.h" IPPROTO_COMP = 108 , # 86 "/usr/include/netinet/in.h" IPPROTO_SCTP = 132 , # 88 "/usr/include/netinet/in.h" IPPROTO_UDPLITE = 136 , # 90 "/usr/include/netinet/in.h" IPPROTO_RAW = 255 , # 92 "/usr/include/netinet/in.h" IPPROTO_MAX } ; # 96 "/usr/include/netinet/in.h" typedef uint16_t in_port_t ; # 99 "/usr/include/netinet/in.h" enum { IPPORT_ECHO = 7 , IPPORT_DISCARD = 9 , IPPORT_SYSTAT = 11 , IPPORT_DAYTIME = 13 , IPPORT_NETSTAT = 15 , IPPORT_FTP = 21 , IPPORT_TELNET = 23 , IPPORT_SMTP = 25 , IPPORT_TIMESERVER = 37 , IPPORT_NAMESERVER = 42 , IPPORT_WHOIS = 43 , IPPORT_MTP = 57 , # 115 "/usr/include/netinet/in.h" IPPORT_TFTP = 69 , IPPORT_RJE = 77 , IPPORT_FINGER = 79 , IPPORT_TTYLINK = 87 , IPPORT_SUPDUP = 95 , # 122 "/usr/include/netinet/in.h" IPPORT_EXECSERVER = 512 , IPPORT_LOGINSERVER = 513 , IPPORT_CMDSERVER = 514 , IPPORT_EFSSERVER = 520 , # 127 "/usr/include/netinet/in.h" IPPORT_BIFFUDP = 512 , IPPORT_WHOSERVER = 513 , IPPORT_ROUTESERVER = 520 , # 132 "/usr/include/netinet/in.h" IPPORT_RESERVED = 1024 , # 135 "/usr/include/netinet/in.h" IPPORT_USERRESERVED = 5000 } ; # 140 "/usr/include/netinet/in.h" typedef uint32_t in_addr_t ; struct in_addr { in_addr_t s_addr ; } ; # 151 "/usr/include/netinet/in.h" # 176 "/usr/include/netinet/in.h" # 178 "/usr/include/netinet/in.h" # 180 "/usr/include/netinet/in.h" # 183 "/usr/include/netinet/in.h" # 185 "/usr/include/netinet/in.h" # 190 "/usr/include/netinet/in.h" # 197 "/usr/include/netinet/in.h" struct in6_addr { union { uint8_t __u6_addr8 [ 16 ] ; # 204 "/usr/include/netinet/in.h" uint16_t __u6_addr16 [ 8 ] ; uint32_t __u6_addr32 [ 4 ] ; # 207 "/usr/include/netinet/in.h" } __in6_u ; # 213 "/usr/include/netinet/in.h" } ; # 215 "/usr/include/netinet/in.h" extern const struct in6_addr in6addr_any ; extern const struct in6_addr in6addr_loopback ; # 224 "/usr/include/netinet/in.h" struct sockaddr_in { sa_family_t sin_family ; in_port_t sin_port ; struct in_addr sin_addr ; # 231 "/usr/include/netinet/in.h" unsigned char sin_zero [ sizeof ( struct sockaddr ) - ( sizeof ( unsigned short int ) ) - sizeof ( in_port_t ) - sizeof ( struct in_addr ) ] ; } ; # 238 "/usr/include/netinet/in.h" struct sockaddr_in6 { sa_family_t sin6_family ; in_port_t sin6_port ; uint32_t sin6_flowinfo ; struct in6_addr sin6_addr ; uint32_t sin6_scope_id ; } ; # 250 "/usr/include/netinet/in.h" struct ip_mreq { struct in_addr imr_multiaddr ; # 256 "/usr/include/netinet/in.h" struct in_addr imr_interface ; } ; # 260 "/usr/include/netinet/in.h" struct ip_mreq_source { struct in_addr imr_multiaddr ; # 265 "/usr/include/netinet/in.h" struct in_addr imr_interface ; # 268 "/usr/include/netinet/in.h" struct in_addr imr_sourceaddr ; } ; # 274 "/usr/include/netinet/in.h" struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr ; # 280 "/usr/include/netinet/in.h" unsigned int ipv6mr_interface ; } ; # 286 "/usr/include/netinet/in.h" struct group_req { uint32_t gr_interface ; # 292 "/usr/include/netinet/in.h" struct sockaddr_storage gr_group ; } ; # 296 "/usr/include/netinet/in.h" struct group_source_req { uint32_t gsr_interface ; # 301 "/usr/include/netinet/in.h" struct sockaddr_storage gsr_group ; # 304 "/usr/include/netinet/in.h" struct sockaddr_storage gsr_source ; } ; # 309 "/usr/include/netinet/in.h" struct ip_msfilter { struct in_addr imsf_multiaddr ; # 315 "/usr/include/netinet/in.h" struct in_addr imsf_interface ; # 318 "/usr/include/netinet/in.h" uint32_t imsf_fmode ; # 321 "/usr/include/netinet/in.h" uint32_t imsf_numsrc ; struct in_addr imsf_slist [ 1 ] ; } ; # 331 "/usr/include/netinet/in.h" struct group_filter { uint32_t gf_interface ; # 336 "/usr/include/netinet/in.h" struct sockaddr_storage gf_group ; # 339 "/usr/include/netinet/in.h" uint32_t gf_fmode ; # 342 "/usr/include/netinet/in.h" uint32_t gf_numsrc ; struct sockaddr_storage gf_slist [ 1 ] ; } ; # 355 "/usr/include/netinet/in.h" # 1 "/usr/include/bits/in.h" # 17 "/usr/include/bits/in.h" # 19 "/usr/include/bits/in.h" # 27 "/usr/include/bits/in.h" # 33 "/usr/include/bits/in.h" # 69 "/usr/include/bits/in.h" # 75 "/usr/include/bits/in.h" # 85 "/usr/include/bits/in.h" struct ip_opts { struct in_addr ip_dst ; char ip_opts [ 40 ] ; } ; # 92 "/usr/include/bits/in.h" struct ip_mreqn { struct in_addr imr_multiaddr ; struct in_addr imr_address ; int imr_ifindex ; } ; # 100 "/usr/include/bits/in.h" struct in_pktinfo { int ipi_ifindex ; struct in_addr ipi_spec_dst ; struct in_addr ipi_addr ; } ; # 111 "/usr/include/bits/in.h" # 156 "/usr/include/bits/in.h" # 162 "/usr/include/bits/in.h" # 168 "/usr/include/bits/in.h" # 172 "/usr/include/bits/in.h" # 357 "/usr/include/netinet/in.h" # 363 "/usr/include/netinet/in.h" # 365 "/usr/include/netinet/in.h" extern uint32_t ntohl ( uint32_t __netlong ) __attribute__ ( ( __const__ ) ) ; extern uint16_t ntohs ( uint16_t __netshort ) __attribute__ ( ( __const__ ) ) ; extern uint32_t htonl ( uint32_t __hostlong ) __attribute__ ( ( __const__ ) ) ; extern uint16_t htons ( uint16_t __hostshort ) __attribute__ ( ( __const__ ) ) ; # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 374 "/usr/include/netinet/in.h" # 375 "/usr/include/netinet/in.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 377 "/usr/include/netinet/in.h" # 439 "/usr/include/netinet/in.h" extern int bindresvport ( int __sockfd , struct sockaddr_in * __sock_in ) ; # 442 "/usr/include/netinet/in.h" extern int bindresvport6 ( int __sockfd , struct sockaddr_in6 * __sock_in ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.headers/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -mp -fast /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.options.fortranCPP(config/PETSc/options/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST configureClosure from config.utilities.closure(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.utilities.closure Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.closure/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 512 stderr: PGC-S-0037-Syntax error: Recovery attempted by deleting '^' (/tmp/scratch/petsc-kMEe3S/config.utilities.closure/conftest.c: 6) PGC/x86-64 Linux 14.2-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link Checking for header: dlfcn.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/dlfcn.h" # 18 "/usr/include/dlfcn.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/dlfcn.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 26 "/usr/include/dlfcn.h" # 27 "/usr/include/dlfcn.h" # 1 "/usr/include/bits/dlfcn.h" # 18 "/usr/include/bits/dlfcn.h" # 24 "/usr/include/bits/dlfcn.h" # 33 "/usr/include/bits/dlfcn.h" # 38 "/usr/include/bits/dlfcn.h" # 41 "/usr/include/bits/dlfcn.h" # 29 "/usr/include/dlfcn.h" # 56 "/usr/include/dlfcn.h" extern void * dlopen ( const char * __file , int __mode ) ; # 60 "/usr/include/dlfcn.h" extern int dlclose ( void * __handle ) ; # 64 "/usr/include/dlfcn.h" extern void * dlsym ( void * __restrict __handle , const char * __restrict __name ) ; # 82 "/usr/include/dlfcn.h" extern char * dlerror ( void ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -lsocket -lnsl -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lsocket Popping language C ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -lfpe -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lfpe Popping language C ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -lsocket -lnsl -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lsocket Popping language C ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -lfpe -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lfpe Popping language C ================================================================================ TEST checkMath from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:293) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:293) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log2(double); static void _check_log2() { double x = 1,y; y = log2(x); ; } int main() { _check_log2();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkCompression from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:302) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:302) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Compression functions are linked in by default ================================================================================ TEST checkRealtime from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:323) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:323) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:339) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:339) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -ldl -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_LIBDL" to "1" Popping language C Pushing language C Popping language C Pushing language CXX Popping language CXX Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C ================================================================================ TEST check_siginfo_t from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.types Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Possible ERROR while running compiler: exit code 512 stderr: PGC-S-0040-Illegal use of symbol, __int64 (/tmp/scratch/petsc-kMEe3S/config.types/conftest.c: 13) PGC-W-0156-Type not specified, 'int' assumed (/tmp/scratch/petsc-kMEe3S/config.types/conftest.c: 13) PGC/x86-64 Linux 14.2-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.types/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.types/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.types/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.types/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.types/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.types/conftest.c" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.types/conftest.c" ================================================================================ TEST checkSignal from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Possible ERROR while running compiler: exit code 512 stderr: PGC-S-0035-Syntax error: Recovery attempted by replacing identifier big by '!=' (/tmp/scratch/petsc-kMEe3S/config.types/conftest.c: 11) PGC-S-0039-Use of undeclared variable not (/tmp/scratch/petsc-kMEe3S/config.types/conftest.c: 13) PGC-S-0039-Use of undeclared variable endian (/tmp/scratch/petsc-kMEe3S/config.types/conftest.c: 13) PGC/x86-64 Linux 14.2-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:356) Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "65536" Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" Pushing language C Popping language C Pushing language C Popping language C Checking for header: linux/kernel.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/linux/kernel.h" # 6 "/usr/include/linux/kernel.h" # 11 "/usr/include/linux/kernel.h" struct sysinfo { long uptime ; unsigned long loads [ 3 ] ; unsigned long totalram ; unsigned long freeram ; unsigned long sharedram ; unsigned long bufferram ; unsigned long totalswap ; unsigned long freeswap ; unsigned short procs ; unsigned short pad ; unsigned long totalhigh ; unsigned long freehigh ; unsigned int mem_unit ; char _f [ 20 - 2 * sizeof ( long ) - sizeof ( int ) ] ; } ; # 28 "/usr/include/linux/kernel.h" # 31 "/usr/include/linux/kernel.h" # 37 "/usr/include/linux/kernel.h" # 41 "/usr/include/linux/kernel.h" # 44 "/usr/include/linux/kernel.h" # 51 "/usr/include/linux/kernel.h" # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/sys/sysinfo.h" # 17 "/usr/include/sys/sysinfo.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 23 "/usr/include/sys/sysinfo.h" # 24 "/usr/include/sys/sysinfo.h" # 1 "/usr/include/linux/kernel.h" # 6 "/usr/include/linux/kernel.h" # 11 "/usr/include/linux/kernel.h" struct sysinfo { long uptime ; unsigned long loads [ 3 ] ; unsigned long totalram ; unsigned long freeram ; unsigned long sharedram ; unsigned long bufferram ; unsigned long totalswap ; unsigned long freeswap ; unsigned short procs ; unsigned short pad ; unsigned long totalhigh ; unsigned long freehigh ; unsigned int mem_unit ; char _f [ 20 - 2 * sizeof ( long ) - sizeof ( int ) ] ; } ; # 28 "/usr/include/linux/kernel.h" # 31 "/usr/include/linux/kernel.h" # 37 "/usr/include/linux/kernel.h" # 41 "/usr/include/linux/kernel.h" # 44 "/usr/include/linux/kernel.h" # 51 "/usr/include/linux/kernel.h" # 26 "/usr/include/sys/sysinfo.h" # 29 "/usr/include/sys/sysinfo.h" extern int sysinfo ( struct sysinfo * __info ) ; # 33 "/usr/include/sys/sysinfo.h" extern int get_nprocs_conf ( void ) ; # 36 "/usr/include/sys/sysinfo.h" extern int get_nprocs ( void ) ; # 40 "/usr/include/sys/sysinfo.h" extern long int get_phys_pages ( void ) ; # 43 "/usr/include/sys/sysinfo.h" extern long int get_avphys_pages ( void ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language CXX Popping language CXX Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C ================================================================================ TEST checkMemcmp from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.functions Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.functions/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.functions/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_SYSINFO" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Possible ERROR while running compiler: exit code 512 stderr: PGC-F-0249-#error -- "Cannot check sysinfo without special headers" (/tmp/scratch/petsc-kMEe3S/config.functions/conftest.c: 13) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_VPRINTF" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl ================================================================================ TEST checkVFPrintf from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_VFPRINTF" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `_vsnprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [vsnprintf] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl ================================================================================ TEST checkNanosleep from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:216) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:216) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:192) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:192) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:202) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:202) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Possible ERROR while running compiler: exit code 512 stderr: PGC-S-0094-Illegal type conversion required (/tmp/scratch/petsc-kMEe3S/config.functions/conftest.c: 6) PGC/x86-64 Linux 14.2-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:208) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:208) Checks whether the variable argument list functionality is working Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time sysctlbyname stricmp] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:70: warning: the `getwd' function is dangerous and should not be used. /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': conftest.c:(.text+0x29): undefined reference to `_sleep' conftest.c:(.text+0x4d): undefined reference to `_getcwd' conftest.c:(.text+0x62): undefined reference to `_lseek' conftest.c:(.text+0x71): undefined reference to `_access' conftest.c:(.text+0xa9): undefined reference to `_snprintf' conftest.c:(.text+0xcd): undefined reference to `sbreak' conftest.c:(.text+0xff): undefined reference to `_set_output_format' conftest.c:(.text+0x106): undefined reference to `PXFGETARG' conftest.c:(.text+0x15b): undefined reference to `sysctlbyname' conftest.c:(.text+0x162): undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [snprintf] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [getwd] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [sleep] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [lseek] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [sbreak] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [getcwd] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [PXFGETARG] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [sysctlbyname] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `sysctlbyname' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' Checking for functions [stricmp] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.functions/conftest' ================================================================================ TEST configureCPURelax from config.atomics(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.atomics Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.atomics/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.atomics -mp -fast /tmp/scratch/petsc-kMEe3S/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.atomics/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.atomics -mp -fast /tmp/scratch/petsc-kMEe3S/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.atomics/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.atomics -mp -fast /tmp/scratch/petsc-kMEe3S/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.atomics/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.atomics -mp -fast /tmp/scratch/petsc-kMEe3S/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST configureMake from config.packages.make(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/make.py:66) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:66) Check for user specified make - or gmake, make Checking for program /ccs/home/adams/git-fat/gmake...not found Checking for program /opt/cray/llm/default/bin/gmake...not found Checking for program /opt/cray/llm/default/etc/gmake...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/gmake...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/gmake...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/gmake...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/gmake...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/gmake...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/gmake...not found Checking for program /ccs/home/adams/git-fat/gmake...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/gmake...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/gmake...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/gmake...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/gmake...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/gmake...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/gmake...not found Checking for program /opt/cray/netcdf/4.3.2/bin/gmake...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/gmake...not found Checking for program /sw/xk6/altd/bin/gmake...not found Checking for program /sw/xk6/site-aprun/bin/gmake...not found Checking for program /sw/xk6/bin/gmake...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/gmake...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/gmake...not found Checking for program /opt/cray/atp/1.7.5/bin/gmake...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/gmake...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/gmake...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/gmake...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/gmake...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/gmake...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/gmake...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/gmake...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/gmake...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/gmake...not found Checking for program /opt/cray/craype/2.2.1/bin/gmake...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/gmake...not found Checking for program /opt/modules/3.2.6.7/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/make.py:84) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:84) Check for GNU make Executing: /usr/bin/gmake --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-unknown-linux-gnu Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/make.py:119) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:119) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 6 cores: using make_np = 5 Defined make macro "MAKE_NP" to "5" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Memory alignment is 16 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Executing: cc -qversion **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.atomics -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.libraries/conftest' Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.atomics -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.libraries/conftest' Popping language C *********BGL/IBM test failure Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/libraryOptions.py:87) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:87) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_SIZE" to "PETSC_SIZEOF_SHORT" ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.atomics -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 512 stderr: PGC-F-0206-Can't find include file sysctl.h (/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.c: 4) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() Checking for header: sigfpe.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file sigfpe.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:PGC-F-0206-Can't find include file sigfpe.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file sigfpe.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Checking for header: fpxcp.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file fpxcp.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:PGC-F-0206-Can't find include file fpxcp.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file fpxcp.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Checking for header: floatingpoint.h Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file floatingpoint.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:PGC-F-0206-Can't find include file floatingpoint.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file floatingpoint.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language FC Popping language FC Checking for functions [get_command_argument_] in library [''] ['/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld', '-L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib', '-L/opt/acml/5.3.1/pgi64_fma4_mp/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib', '-L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64', '-L/opt/cray/nvidia/default/lib64', '-L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64', '-L/opt/cray/atp/1.7.5/lib', '-L/opt/pgi/14.2.0/linux86-64/14.2/libso', '-L/opt/pgi/14.2.0/linux86-64/14.2/lib', '-L/usr/lib64/gcc/x86_64-suse-linux/4.3', '-Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso', '-lnetcdff_parallel', '-lmpichf90_pgi', '-lm'] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: File with unknown suffix passed to linker: /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o: In function `_check_get_command_argument_': /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c:5: undefined reference to `get_command_argument_' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.libraries/conftest' Popping language C Checking for functions [getarg_] in library [''] ['/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld', '-L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib', '-L/opt/acml/5.3.1/pgi64_fma4_mp/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib', '-L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64', '-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64', '-L/opt/cray/nvidia/default/lib64', '-L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64', '-L/opt/cray/atp/1.7.5/lib', '-L/opt/pgi/14.2.0/linux86-64/14.2/libso', '-L/opt/pgi/14.2.0/linux86-64/14.2/lib', '-L/usr/lib64/gcc/x86_64-suse-linux/4.3', '-Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso', '-lnetcdff_parallel', '-lmpichf90_pgi', '-lm'] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: stderr: File with unknown suffix passed to linker: /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Popping language C Checking for functions [ipxfargc_] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Checking for functions [f90_unix_MP_iargc] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Checking for functions [PXFGETARG] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Checking for functions [iargc_] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld Checking for functions [GETARG@16] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Possible ERROR while running compiler: exit code 512 stderr: PGC-S-0255-Illegal token in #if expression (/tmp/scratch/petsc-kMEe3S/config.functions/conftest.c: 21) PGC-S-0226-Syntax error in #if (/tmp/scratch/petsc-kMEe3S/config.functions/conftest.c: 21) PGC/x86-64 Linux 14.2-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) GETARG@16_will_always_fail_with_ENOSYS(); #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.functions/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.functions/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -lnetcdff_parallel -lmpichf90_pgi -lm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -l/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Pushing language C Defined "HAVE_GETARG" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX ================================================================================ TEST configureMissingDefines from config.utilities.missing(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.utilities.missing Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:110) Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:135) Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.utilities.missing/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language Cxx Pushing language C Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Pushing language C Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 5 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 10 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 12 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 41 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 50 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 1 "/usr/include/stdint.h" # 17 "/usr/include/stdint.h" # 21 "/usr/include/stdint.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/stdint.h" # 1 "/usr/include/bits/wchar.h" # 18 "/usr/include/bits/wchar.h" # 28 "/usr/include/stdint.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/stdint.h" # 30 "/usr/include/stdint.h" # 32 "/usr/include/stdint.h" # 34 "/usr/include/stdint.h" # 37 "/usr/include/stdint.h" typedef signed char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 41 "/usr/include/stdint.h" typedef long int int64_t ; # 48 "/usr/include/stdint.h" typedef unsigned char uint8_t ; typedef unsigned short int uint16_t ; # 52 "/usr/include/stdint.h" typedef unsigned int uint32_t ; # 56 "/usr/include/stdint.h" typedef unsigned long int uint64_t ; # 63 "/usr/include/stdint.h" # 65 "/usr/include/stdint.h" typedef signed char int_least8_t ; typedef short int int_least16_t ; typedef int int_least32_t ; # 70 "/usr/include/stdint.h" typedef long int int_least64_t ; # 76 "/usr/include/stdint.h" typedef unsigned char uint_least8_t ; typedef unsigned short int uint_least16_t ; typedef unsigned int uint_least32_t ; # 81 "/usr/include/stdint.h" typedef unsigned long int uint_least64_t ; # 88 "/usr/include/stdint.h" # 90 "/usr/include/stdint.h" typedef signed char int_fast8_t ; # 93 "/usr/include/stdint.h" typedef long int int_fast16_t ; typedef long int int_fast32_t ; typedef long int int_fast64_t ; # 103 "/usr/include/stdint.h" typedef unsigned char uint_fast8_t ; # 106 "/usr/include/stdint.h" typedef unsigned long int uint_fast16_t ; typedef unsigned long int uint_fast32_t ; typedef unsigned long int uint_fast64_t ; # 117 "/usr/include/stdint.h" # 120 "/usr/include/stdint.h" typedef long int intptr_t ; # 123 "/usr/include/stdint.h" typedef unsigned long int uintptr_t ; # 133 "/usr/include/stdint.h" # 135 "/usr/include/stdint.h" typedef long int intmax_t ; typedef unsigned long int uintmax_t ; # 146 "/usr/include/stdint.h" # 157 "/usr/include/stdint.h" # 159 "/usr/include/stdint.h" # 164 "/usr/include/stdint.h" # 170 "/usr/include/stdint.h" # 177 "/usr/include/stdint.h" # 182 "/usr/include/stdint.h" # 188 "/usr/include/stdint.h" # 195 "/usr/include/stdint.h" # 205 "/usr/include/stdint.h" # 216 "/usr/include/stdint.h" # 228 "/usr/include/stdint.h" # 240 "/usr/include/stdint.h" # 242 "/usr/include/stdint.h" # 245 "/usr/include/stdint.h" # 249 "/usr/include/stdint.h" # 251 "/usr/include/stdint.h" # 260 "/usr/include/stdint.h" # 264 "/usr/include/stdint.h" # 271 "/usr/include/stdint.h" # 273 "/usr/include/stdint.h" # 278 "/usr/include/stdint.h" # 286 "/usr/include/stdint.h" # 289 "/usr/include/stdint.h" # 299 "/usr/include/stdint.h" # 309 "/usr/include/stdint.h" # 54 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 59 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 82 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 92 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 98 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Datatype ; # 149 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 191 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 205 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 214 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 227 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 248 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 264 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 269 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 275 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 280 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Comm ; # 285 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Group ; # 289 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Win ; # 293 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 297 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef struct ADIOI_FileD * MPI_File ; # 301 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Op ; # 319 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 331 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 341 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 352 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 359 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 363 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1 , MPI_WIN_FLAVOR_ALLOCATE = 2 , MPI_WIN_FLAVOR_DYNAMIC = 3 , MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t ; # 371 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1 , MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t ; # 377 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 380 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_Topo_type { MPI_GRAPH = 1 , MPI_CART = 2 , MPI_DIST_GRAPH = 3 } MPIR_Topo_type ; # 384 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" extern int * const MPI_UNWEIGHTED ; extern int * const MPI_WEIGHTS_EMPTY ; # 395 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef void ( MPI_Handler_function ) ( MPI_Comm * , int * , ... ) ; typedef int ( MPI_Comm_copy_attr_function ) ( MPI_Comm , int , void * , void * , void * , int * ) ; typedef int ( MPI_Comm_delete_attr_function ) ( MPI_Comm , int , void * , void * ) ; typedef int ( MPI_Type_copy_attr_function ) ( MPI_Datatype , int , void * , void * , void * , int * ) ; typedef int ( MPI_Type_delete_attr_function ) ( MPI_Datatype , int , void * , void * ) ; typedef int ( MPI_Win_copy_attr_function ) ( MPI_Win , int , void * , void * , void * , int * ) ; typedef int ( MPI_Win_delete_attr_function ) ( MPI_Win , int , void * , void * ) ; typedef void ( MPI_Comm_errhandler_function ) ( MPI_Comm * , int * , ... ) ; typedef void ( MPI_File_errhandler_function ) ( MPI_File * , int * , ... ) ; typedef void ( MPI_Win_errhandler_function ) ( MPI_Win * , int * , ... ) ; typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn ; typedef MPI_File_errhandler_function MPI_File_errhandler_fn ; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn ; # 416 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 422 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 424 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Errhandler ; # 428 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 433 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 444 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Request ; # 447 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Message ; # 450 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef void ( MPI_User_function ) ( void * , void * , int * , MPI_Datatype * ) ; # 453 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int ( MPI_Copy_function ) ( MPI_Comm , int , void * , void * , void * , int * ) ; typedef int ( MPI_Delete_function ) ( MPI_Comm , int , void * , void * ) ; # 486 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 498 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1 , MPI_COMBINER_DUP = 2 , MPI_COMBINER_CONTIGUOUS = 3 , MPI_COMBINER_VECTOR = 4 , MPI_COMBINER_HVECTOR_INTEGER = 5 , MPI_COMBINER_HVECTOR = 6 , MPI_COMBINER_INDEXED = 7 , MPI_COMBINER_HINDEXED_INTEGER = 8 , MPI_COMBINER_HINDEXED = 9 , MPI_COMBINER_INDEXED_BLOCK = 10 , MPI_COMBINER_STRUCT_INTEGER = 11 , MPI_COMBINER_STRUCT = 12 , MPI_COMBINER_SUBARRAY = 13 , MPI_COMBINER_DARRAY = 14 , MPI_COMBINER_F90_REAL = 15 , MPI_COMBINER_F90_COMPLEX = 16 , MPI_COMBINER_F90_INTEGER = 17 , MPI_COMBINER_RESIZED = 18 , MPI_COMBINER_HINDEXED_BLOCK = 19 } ; # 521 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Info ; # 528 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 538 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 545 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 548 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef long MPI_Aint ; typedef int MPI_Fint ; typedef long long MPI_Count ; # 559 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 563 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 567 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef long long MPI_Offset ; # 574 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef struct MPI_Status { int count_lo ; int count_hi_and_cancelled ; int MPI_SOURCE ; int MPI_TAG ; int MPI_ERROR ; } MPI_Status ; # 583 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" struct MPIR_T_enum_s ; struct MPIR_T_cvar_handle_s ; struct MPIR_T_pvar_handle_s ; struct MPIR_T_pvar_session_s ; # 589 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef struct MPIR_T_enum_s * MPI_T_enum ; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle ; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle ; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session ; # 594 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES ; # 603 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0 , # 609 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_VERBOSITY_USER_BASIC = 221 , MPI_T_VERBOSITY_USER_DETAIL , MPI_T_VERBOSITY_USER_ALL , # 614 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_VERBOSITY_TUNER_BASIC , MPI_T_VERBOSITY_TUNER_DETAIL , MPI_T_VERBOSITY_TUNER_ALL , # 618 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_VERBOSITY_MPIDEV_BASIC , MPI_T_VERBOSITY_MPIDEV_DETAIL , MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t ; # 623 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0 , # 628 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_BIND_NO_OBJECT = 9700 , MPI_T_BIND_MPI_COMM , MPI_T_BIND_MPI_DATATYPE , MPI_T_BIND_MPI_ERRHANDLER , MPI_T_BIND_MPI_FILE , MPI_T_BIND_MPI_GROUP , MPI_T_BIND_MPI_OP , MPI_T_BIND_MPI_REQUEST , MPI_T_BIND_MPI_WIN , MPI_T_BIND_MPI_MESSAGE , MPI_T_BIND_MPI_INFO } MPIR_T_bind_t ; # 642 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0 , # 647 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_SCOPE_CONSTANT = 60438 , MPI_T_SCOPE_READONLY , MPI_T_SCOPE_LOCAL , MPI_T_SCOPE_GROUP , MPI_T_SCOPE_GROUP_EQ , MPI_T_SCOPE_ALL , MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t ; # 657 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0 , # 662 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPIR_T_PVAR_CLASS_FIRST = 240 , MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST , MPI_T_PVAR_CLASS_LEVEL , MPI_T_PVAR_CLASS_SIZE , MPI_T_PVAR_CLASS_PERCENTAGE , MPI_T_PVAR_CLASS_HIGHWATERMARK , MPI_T_PVAR_CLASS_LOWWATERMARK , MPI_T_PVAR_CLASS_COUNTER , MPI_T_PVAR_CLASS_AGGREGATE , MPI_T_PVAR_CLASS_TIMER , MPI_T_PVAR_CLASS_GENERIC , MPIR_T_PVAR_CLASS_LAST , MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t ; # 678 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 680 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 700 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 724 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 726 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE ; extern MPI_Fint * MPI_F_STATUSES_IGNORE ; # 731 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 734 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 738 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 744 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int ( MPI_Grequest_cancel_function ) ( void * , int ) ; typedef int ( MPI_Grequest_free_function ) ( void * ) ; typedef int ( MPI_Grequest_query_function ) ( void * , MPI_Status * ) ; typedef int ( MPIX_Grequest_poll_function ) ( void * , MPI_Status * ) ; typedef int ( MPIX_Grequest_wait_function ) ( int , void * * , double , MPI_Status * ) ; # 751 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 753 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 763 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 768 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 772 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 775 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 781 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 785 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 801 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 833 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 854 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 857 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 859 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int ( MPI_Datarep_conversion_function ) ( void * , MPI_Datatype , int , void * , MPI_Offset , void * ) ; typedef int ( MPI_Datarep_extent_function ) ( MPI_Datatype datatype , MPI_Aint * , void * ) ; # 870 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 876 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 878 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Send ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int MPI_Recv ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Status * status ) ; int MPI_Get_count ( const MPI_Status * status , MPI_Datatype datatype , int * count ) ; int MPI_Bsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int MPI_Ssend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int MPI_Rsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int MPI_Buffer_attach ( void * buffer , int size ) ; int MPI_Buffer_detach ( void * buffer_addr , int * size ) ; int MPI_Isend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ibsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Issend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Irsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Irecv ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Wait ( MPI_Request * request , MPI_Status * status ) ; int MPI_Test ( MPI_Request * request , int * flag , MPI_Status * status ) ; int MPI_Request_free ( MPI_Request * request ) ; int MPI_Waitany ( int count , MPI_Request array_of_requests [ ] , int * indx , MPI_Status * status ) ; int MPI_Testany ( int count , MPI_Request array_of_requests [ ] , int * indx , int * flag , MPI_Status * status ) ; int MPI_Waitall ( int count , MPI_Request array_of_requests [ ] , MPI_Status array_of_statuses [ ] ) ; int MPI_Testall ( int count , MPI_Request array_of_requests [ ] , int * flag , MPI_Status array_of_statuses [ ] ) ; int MPI_Waitsome ( int incount , MPI_Request array_of_requests [ ] , int * outcount , int array_of_indices [ ] , MPI_Status array_of_statuses [ ] ) ; int MPI_Testsome ( int incount , MPI_Request array_of_requests [ ] , int * outcount , int array_of_indices [ ] , MPI_Status array_of_statuses [ ] ) ; int MPI_Iprobe ( int source , int tag , MPI_Comm comm , int * flag , MPI_Status * status ) ; int MPI_Probe ( int source , int tag , MPI_Comm comm , MPI_Status * status ) ; int MPI_Cancel ( MPI_Request * request ) ; int MPI_Test_cancelled ( const MPI_Status * status , int * flag ) ; int MPI_Send_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Bsend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ssend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Rsend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Recv_init ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Start ( MPI_Request * request ) ; int MPI_Startall ( int count , MPI_Request array_of_requests [ ] ) ; int MPI_Sendrecv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , int dest , int sendtag , void * recvbuf , int recvcount , MPI_Datatype recvtype , int source , int recvtag , MPI_Comm comm , MPI_Status * status ) ; int MPI_Sendrecv_replace ( void * buf , int count , MPI_Datatype datatype , int dest , int sendtag , int source , int recvtag , MPI_Comm comm , MPI_Status * status ) ; int MPI_Type_contiguous ( int count , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_vector ( int count , int blocklength , int stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_hvector ( int count , int blocklength , MPI_Aint stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_indexed ( int count , const int * array_of_blocklengths , const int * array_of_displacements , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_hindexed ( int count , const int * array_of_blocklengths , const MPI_Aint * array_of_displacements , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_struct ( int count , const int * array_of_blocklengths , const MPI_Aint * array_of_displacements , const MPI_Datatype * array_of_types , MPI_Datatype * newtype ) ; int MPI_Address ( const void * location , MPI_Aint * address ) ; int MPI_Type_extent ( MPI_Datatype datatype , MPI_Aint * extent ) ; int MPI_Type_size ( MPI_Datatype datatype , int * size ) ; int MPI_Type_lb ( MPI_Datatype datatype , MPI_Aint * displacement ) ; int MPI_Type_ub ( MPI_Datatype datatype , MPI_Aint * displacement ) ; int MPI_Type_commit ( MPI_Datatype * datatype ) ; int MPI_Type_free ( MPI_Datatype * datatype ) ; int MPI_Get_elements ( const MPI_Status * status , MPI_Datatype datatype , int * count ) ; int MPI_Pack ( const void * inbuf , int incount , MPI_Datatype datatype , void * outbuf , int outsize , int * position , MPI_Comm comm ) ; int MPI_Unpack ( const void * inbuf , int insize , int * position , void * outbuf , int outcount , MPI_Datatype datatype , MPI_Comm comm ) ; int MPI_Pack_size ( int incount , MPI_Datatype datatype , MPI_Comm comm , int * size ) ; int MPI_Barrier ( MPI_Comm comm ) ; int MPI_Bcast ( void * buffer , int count , MPI_Datatype datatype , int root , MPI_Comm comm ) ; int MPI_Gather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int MPI_Gatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * displs , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int MPI_Scatter ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int MPI_Scatterv ( const void * sendbuf , const int * sendcounts , const int * displs , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int MPI_Allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * displs , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Alltoallv ( const void * sendbuf , const int * sendcounts , const int * sdispls , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * rdispls , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Alltoallw ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm ) ; int MPI_Exscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Reduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , int root , MPI_Comm comm ) ; int MPI_Op_create ( MPI_User_function * user_fn , int commute , MPI_Op * op ) ; int MPI_Op_free ( MPI_Op * op ) ; int MPI_Allreduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Reduce_scatter ( const void * sendbuf , void * recvbuf , const int recvcounts [ ] , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Scan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Group_size ( MPI_Group group , int * size ) ; int MPI_Group_rank ( MPI_Group group , int * rank ) ; int MPI_Group_translate_ranks ( MPI_Group group1 , int n , const int ranks1 [ ] , MPI_Group group2 , int ranks2 [ ] ) ; int MPI_Group_compare ( MPI_Group group1 , MPI_Group group2 , int * result ) ; int MPI_Comm_group ( MPI_Comm comm , MPI_Group * group ) ; int MPI_Group_union ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int MPI_Group_intersection ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int MPI_Group_difference ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int MPI_Group_incl ( MPI_Group group , int n , const int ranks [ ] , MPI_Group * newgroup ) ; int MPI_Group_excl ( MPI_Group group , int n , const int ranks [ ] , MPI_Group * newgroup ) ; int MPI_Group_range_incl ( MPI_Group group , int n , int ranges [ ] [ 3 ] , MPI_Group * newgroup ) ; int MPI_Group_range_excl ( MPI_Group group , int n , int ranges [ ] [ 3 ] , MPI_Group * newgroup ) ; int MPI_Group_free ( MPI_Group * group ) ; int MPI_Comm_size ( MPI_Comm comm , int * size ) ; int MPI_Comm_rank ( MPI_Comm comm , int * rank ) ; int MPI_Comm_compare ( MPI_Comm comm1 , MPI_Comm comm2 , int * result ) ; int MPI_Comm_dup ( MPI_Comm comm , MPI_Comm * newcomm ) ; int MPI_Comm_dup_with_info ( MPI_Comm comm , MPI_Info info , MPI_Comm * newcomm ) ; int MPI_Comm_create ( MPI_Comm comm , MPI_Group group , MPI_Comm * newcomm ) ; int MPI_Comm_split ( MPI_Comm comm , int color , int key , MPI_Comm * newcomm ) ; int MPI_Comm_free ( MPI_Comm * comm ) ; int MPI_Comm_test_inter ( MPI_Comm comm , int * flag ) ; int MPI_Comm_remote_size ( MPI_Comm comm , int * size ) ; int MPI_Comm_remote_group ( MPI_Comm comm , MPI_Group * group ) ; int MPI_Intercomm_create ( MPI_Comm local_comm , int local_leader , MPI_Comm peer_comm , int remote_leader , int tag , MPI_Comm * newintercomm ) ; int MPI_Intercomm_merge ( MPI_Comm intercomm , int high , MPI_Comm * newintracomm ) ; int MPI_Keyval_create ( MPI_Copy_function * copy_fn , MPI_Delete_function * delete_fn , int * keyval , void * extra_state ) ; int MPI_Keyval_free ( int * keyval ) ; int MPI_Attr_put ( MPI_Comm comm , int keyval , void * attribute_val ) ; int MPI_Attr_get ( MPI_Comm comm , int keyval , void * attribute_val , int * flag ) ; int MPI_Attr_delete ( MPI_Comm comm , int keyval ) ; int MPI_Topo_test ( MPI_Comm comm , int * status ) ; int MPI_Cart_create ( MPI_Comm comm_old , int ndims , const int dims [ ] , const int periods [ ] , int reorder , MPI_Comm * comm_cart ) ; int MPI_Dims_create ( int nnodes , int ndims , int dims [ ] ) ; int MPI_Graph_create ( MPI_Comm comm_old , int nnodes , const int indx [ ] , const int edges [ ] , int reorder , MPI_Comm * comm_graph ) ; int MPI_Graphdims_get ( MPI_Comm comm , int * nnodes , int * nedges ) ; int MPI_Graph_get ( MPI_Comm comm , int maxindex , int maxedges , int indx [ ] , int edges [ ] ) ; int MPI_Cartdim_get ( MPI_Comm comm , int * ndims ) ; int MPI_Cart_get ( MPI_Comm comm , int maxdims , int dims [ ] , int periods [ ] , int coords [ ] ) ; int MPI_Cart_rank ( MPI_Comm comm , const int coords [ ] , int * rank ) ; int MPI_Cart_coords ( MPI_Comm comm , int rank , int maxdims , int coords [ ] ) ; int MPI_Graph_neighbors_count ( MPI_Comm comm , int rank , int * nneighbors ) ; int MPI_Graph_neighbors ( MPI_Comm comm , int rank , int maxneighbors , int neighbors [ ] ) ; int MPI_Cart_shift ( MPI_Comm comm , int direction , int disp , int * rank_source , int * rank_dest ) ; int MPI_Cart_sub ( MPI_Comm comm , const int remain_dims [ ] , MPI_Comm * newcomm ) ; int MPI_Cart_map ( MPI_Comm comm , int ndims , const int dims [ ] , const int periods [ ] , int * newrank ) ; int MPI_Graph_map ( MPI_Comm comm , int nnodes , const int indx [ ] , const int edges [ ] , int * newrank ) ; int MPI_Get_processor_name ( char * name , int * resultlen ) ; int MPI_Get_version ( int * version , int * subversion ) ; int MPI_Get_library_version ( char * version , int * resultlen ) ; int MPI_Errhandler_create ( MPI_Handler_function * function , MPI_Errhandler * errhandler ) ; int MPI_Errhandler_set ( MPI_Comm comm , MPI_Errhandler errhandler ) ; int MPI_Errhandler_get ( MPI_Comm comm , MPI_Errhandler * errhandler ) ; int MPI_Errhandler_free ( MPI_Errhandler * errhandler ) ; int MPI_Error_string ( int errorcode , char * string , int * resultlen ) ; int MPI_Error_class ( int errorcode , int * errorclass ) ; double MPI_Wtime ( void ) ; double MPI_Wtick ( void ) ; int MPI_Init ( int * argc , char * * * argv ) ; int MPI_Finalize ( void ) ; int MPI_Initialized ( int * flag ) ; int MPI_Abort ( MPI_Comm comm , int errorcode ) ; # 1085 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Pcontrol ( const int level , ... ) ; int MPIR_Dup_fn ( MPI_Comm oldcomm , int keyval , void * extra_state , void * attribute_val_in , void * attribute_val_out , int * flag ) ; # 1090 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Close_port ( const char * port_name ) ; int MPI_Comm_accept ( const char * port_name , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * newcomm ) ; int MPI_Comm_connect ( const char * port_name , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * newcomm ) ; int MPI_Comm_disconnect ( MPI_Comm * comm ) ; int MPI_Comm_get_parent ( MPI_Comm * parent ) ; int MPI_Comm_join ( int fd , MPI_Comm * intercomm ) ; int MPI_Comm_spawn ( const char * command , char * argv [ ] , int maxprocs , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * intercomm , int array_of_errcodes [ ] ) ; int MPI_Comm_spawn_multiple ( int count , char * array_of_commands [ ] , char * * array_of_argv [ ] , const int array_of_maxprocs [ ] , const MPI_Info array_of_info [ ] , int root , MPI_Comm comm , MPI_Comm * intercomm , int array_of_errcodes [ ] ) ; int MPI_Lookup_name ( const char * service_name , MPI_Info info , char * port_name ) ; int MPI_Open_port ( MPI_Info info , char * port_name ) ; int MPI_Publish_name ( const char * service_name , MPI_Info info , const char * port_name ) ; int MPI_Unpublish_name ( const char * service_name , MPI_Info info , const char * port_name ) ; int MPI_Comm_set_info ( MPI_Comm comm , MPI_Info info ) ; int MPI_Comm_get_info ( MPI_Comm comm , MPI_Info * info ) ; # 1111 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win ) ; int MPI_Get ( void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win ) ; int MPI_Put ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win ) ; int MPI_Win_complete ( MPI_Win win ) ; int MPI_Win_create ( void * base , MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , MPI_Win * win ) ; int MPI_Win_fence ( int assert , MPI_Win win ) ; int MPI_Win_free ( MPI_Win * win ) ; int MPI_Win_get_group ( MPI_Win win , MPI_Group * group ) ; int MPI_Win_lock ( int lock_type , int rank , int assert , MPI_Win win ) ; int MPI_Win_post ( MPI_Group group , int assert , MPI_Win win ) ; int MPI_Win_start ( MPI_Group group , int assert , MPI_Win win ) ; int MPI_Win_test ( MPI_Win win , int * flag ) ; int MPI_Win_unlock ( int rank , MPI_Win win ) ; int MPI_Win_wait ( MPI_Win win ) ; # 1135 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Win_allocate ( MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , void * baseptr , MPI_Win * win ) ; int MPI_Win_allocate_shared ( MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , void * baseptr , MPI_Win * win ) ; int MPI_Win_shared_query ( MPI_Win win , int rank , MPI_Aint * size , int * disp_unit , void * baseptr ) ; int MPI_Win_create_dynamic ( MPI_Info info , MPI_Comm comm , MPI_Win * win ) ; int MPI_Win_attach ( MPI_Win win , void * base , MPI_Aint size ) ; int MPI_Win_detach ( MPI_Win win , const void * base ) ; int MPI_Win_get_info ( MPI_Win win , MPI_Info * info_used ) ; int MPI_Win_set_info ( MPI_Win win , MPI_Info info ) ; int MPI_Get_accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , void * result_addr , int result_count , MPI_Datatype result_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win ) ; int MPI_Fetch_and_op ( const void * origin_addr , void * result_addr , MPI_Datatype datatype , int target_rank , MPI_Aint target_disp , MPI_Op op , MPI_Win win ) ; int MPI_Compare_and_swap ( const void * origin_addr , const void * compare_addr , void * result_addr , MPI_Datatype datatype , int target_rank , MPI_Aint target_disp , MPI_Win win ) ; int MPI_Rput ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win , MPI_Request * request ) ; int MPI_Rget ( void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win , MPI_Request * request ) ; int MPI_Raccumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win , MPI_Request * request ) ; int MPI_Rget_accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , void * result_addr , int result_count , MPI_Datatype result_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win , MPI_Request * request ) ; int MPI_Win_lock_all ( int assert , MPI_Win win ) ; int MPI_Win_unlock_all ( MPI_Win win ) ; int MPI_Win_flush ( int rank , MPI_Win win ) ; int MPI_Win_flush_all ( MPI_Win win ) ; int MPI_Win_flush_local ( int rank , MPI_Win win ) ; int MPI_Win_flush_local_all ( MPI_Win win ) ; int MPI_Win_sync ( MPI_Win win ) ; int MPI_Add_error_class ( int * errorclass ) ; int MPI_Add_error_code ( int errorclass , int * errorcode ) ; int MPI_Add_error_string ( int errorcode , const char * string ) ; int MPI_Comm_call_errhandler ( MPI_Comm comm , int errorcode ) ; int MPI_Comm_create_keyval ( MPI_Comm_copy_attr_function * comm_copy_attr_fn , MPI_Comm_delete_attr_function * comm_delete_attr_fn , int * comm_keyval , void * extra_state ) ; int MPI_Comm_delete_attr ( MPI_Comm comm , int comm_keyval ) ; int MPI_Comm_free_keyval ( int * comm_keyval ) ; int MPI_Comm_get_attr ( MPI_Comm comm , int comm_keyval , void * attribute_val , int * flag ) ; int MPI_Comm_get_name ( MPI_Comm comm , char * comm_name , int * resultlen ) ; int MPI_Comm_set_attr ( MPI_Comm comm , int comm_keyval , void * attribute_val ) ; int MPI_Comm_set_name ( MPI_Comm comm , const char * comm_name ) ; int MPI_File_call_errhandler ( MPI_File fh , int errorcode ) ; int MPI_Grequest_complete ( MPI_Request request ) ; int MPI_Grequest_start ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , void * extra_state , MPI_Request * request ) ; int MPI_Init_thread ( int * argc , char * * * argv , int required , int * provided ) ; int MPI_Is_thread_main ( int * flag ) ; int MPI_Query_thread ( int * provided ) ; int MPI_Status_set_cancelled ( MPI_Status * status , int flag ) ; int MPI_Status_set_elements ( MPI_Status * status , MPI_Datatype datatype , int count ) ; int MPI_Type_create_keyval ( MPI_Type_copy_attr_function * type_copy_attr_fn , MPI_Type_delete_attr_function * type_delete_attr_fn , int * type_keyval , void * extra_state ) ; int MPI_Type_delete_attr ( MPI_Datatype datatype , int type_keyval ) ; int MPI_Type_dup ( MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_free_keyval ( int * type_keyval ) ; int MPI_Type_get_attr ( MPI_Datatype datatype , int type_keyval , void * attribute_val , int * flag ) ; int MPI_Type_get_contents ( MPI_Datatype datatype , int max_integers , int max_addresses , int max_datatypes , int array_of_integers [ ] , MPI_Aint array_of_addresses [ ] , MPI_Datatype array_of_datatypes [ ] ) ; int MPI_Type_get_envelope ( MPI_Datatype datatype , int * num_integers , int * num_addresses , int * num_datatypes , int * combiner ) ; int MPI_Type_get_name ( MPI_Datatype datatype , char * type_name , int * resultlen ) ; int MPI_Type_set_attr ( MPI_Datatype datatype , int type_keyval , void * attribute_val ) ; int MPI_Type_set_name ( MPI_Datatype datatype , const char * type_name ) ; int MPI_Type_match_size ( int typeclass , int size , MPI_Datatype * datatype ) ; int MPI_Win_call_errhandler ( MPI_Win win , int errorcode ) ; int MPI_Win_create_keyval ( MPI_Win_copy_attr_function * win_copy_attr_fn , MPI_Win_delete_attr_function * win_delete_attr_fn , int * win_keyval , void * extra_state ) ; int MPI_Win_delete_attr ( MPI_Win win , int win_keyval ) ; int MPI_Win_free_keyval ( int * win_keyval ) ; int MPI_Win_get_attr ( MPI_Win win , int win_keyval , void * attribute_val , int * flag ) ; int MPI_Win_get_name ( MPI_Win win , char * win_name , int * resultlen ) ; int MPI_Win_set_attr ( MPI_Win win , int win_keyval , void * attribute_val ) ; int MPI_Win_set_name ( MPI_Win win , const char * win_name ) ; # 1243 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Alloc_mem ( MPI_Aint size , MPI_Info info , void * baseptr ) ; int MPI_Comm_create_errhandler ( MPI_Comm_errhandler_function * comm_errhandler_fn , MPI_Errhandler * errhandler ) ; int MPI_Comm_get_errhandler ( MPI_Comm comm , MPI_Errhandler * errhandler ) ; int MPI_Comm_set_errhandler ( MPI_Comm comm , MPI_Errhandler errhandler ) ; int MPI_File_create_errhandler ( MPI_File_errhandler_function * file_errhandler_fn , MPI_Errhandler * errhandler ) ; int MPI_File_get_errhandler ( MPI_File file , MPI_Errhandler * errhandler ) ; int MPI_File_set_errhandler ( MPI_File file , MPI_Errhandler errhandler ) ; int MPI_Finalized ( int * flag ) ; int MPI_Free_mem ( void * base ) ; int MPI_Get_address ( const void * location , MPI_Aint * address ) ; int MPI_Info_create ( MPI_Info * info ) ; int MPI_Info_delete ( MPI_Info info , const char * key ) ; int MPI_Info_dup ( MPI_Info info , MPI_Info * newinfo ) ; int MPI_Info_free ( MPI_Info * info ) ; int MPI_Info_get ( MPI_Info info , const char * key , int valuelen , char * value , int * flag ) ; int MPI_Info_get_nkeys ( MPI_Info info , int * nkeys ) ; int MPI_Info_get_nthkey ( MPI_Info info , int n , char * key ) ; int MPI_Info_get_valuelen ( MPI_Info info , const char * key , int * valuelen , int * flag ) ; int MPI_Info_set ( MPI_Info info , const char * key , const char * value ) ; int MPI_Pack_external ( const char datarep [ ] , const void * inbuf , int incount , MPI_Datatype datatype , void * outbuf , MPI_Aint outsize , MPI_Aint * position ) ; int MPI_Pack_external_size ( const char datarep [ ] , int incount , MPI_Datatype datatype , MPI_Aint * size ) ; int MPI_Request_get_status ( MPI_Request request , int * flag , MPI_Status * status ) ; int MPI_Status_c2f ( const MPI_Status * c_status , MPI_Fint * f_status ) ; int MPI_Status_f2c ( const MPI_Fint * f_status , MPI_Status * c_status ) ; int MPI_Type_create_darray ( int size , int rank , int ndims , const int array_of_gsizes [ ] , const int array_of_distribs [ ] , const int array_of_dargs [ ] , const int array_of_psizes [ ] , int order , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_hindexed ( int count , const int array_of_blocklengths [ ] , const MPI_Aint array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_hvector ( int count , int blocklength , MPI_Aint stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_indexed_block ( int count , int blocklength , const int array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_hindexed_block ( int count , int blocklength , const MPI_Aint array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_resized ( MPI_Datatype oldtype , MPI_Aint lb , MPI_Aint extent , MPI_Datatype * newtype ) ; int MPI_Type_create_struct ( int count , const int array_of_blocklengths [ ] , const MPI_Aint array_of_displacements [ ] , const MPI_Datatype array_of_types [ ] , MPI_Datatype * newtype ) ; int MPI_Type_create_subarray ( int ndims , const int array_of_sizes [ ] , const int array_of_subsizes [ ] , const int array_of_starts [ ] , int order , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_get_extent ( MPI_Datatype datatype , MPI_Aint * lb , MPI_Aint * extent ) ; int MPI_Type_get_true_extent ( MPI_Datatype datatype , MPI_Aint * true_lb , MPI_Aint * true_extent ) ; int MPI_Unpack_external ( const char datarep [ ] , const void * inbuf , MPI_Aint insize , MPI_Aint * position , void * outbuf , int outcount , MPI_Datatype datatype ) ; int MPI_Win_create_errhandler ( MPI_Win_errhandler_function * win_errhandler_fn , MPI_Errhandler * errhandler ) ; int MPI_Win_get_errhandler ( MPI_Win win , MPI_Errhandler * errhandler ) ; int MPI_Win_set_errhandler ( MPI_Win win , MPI_Errhandler errhandler ) ; # 1306 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Type_create_f90_integer ( int range , MPI_Datatype * newtype ) ; int MPI_Type_create_f90_real ( int precision , int range , MPI_Datatype * newtype ) ; int MPI_Type_create_f90_complex ( int precision , int range , MPI_Datatype * newtype ) ; # 1311 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Reduce_local ( const void * inbuf , void * inoutbuf , int count , MPI_Datatype datatype , MPI_Op op ) ; int MPI_Op_commutative ( MPI_Op op , int * commute ) ; int MPI_Reduce_scatter_block ( const void * sendbuf , void * recvbuf , int recvcount , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Dist_graph_create_adjacent ( MPI_Comm comm_old , int indegree , const int sources [ ] , const int sourceweights [ ] , int outdegree , const int destinations [ ] , const int destweights [ ] , MPI_Info info , int reorder , MPI_Comm * comm_dist_graph ) ; int MPI_Dist_graph_create ( MPI_Comm comm_old , int n , const int sources [ ] , const int degrees [ ] , const int destinations [ ] , const int weights [ ] , MPI_Info info , int reorder , MPI_Comm * comm_dist_graph ) ; int MPI_Dist_graph_neighbors_count ( MPI_Comm comm , int * indegree , int * outdegree , int * weighted ) ; int MPI_Dist_graph_neighbors ( MPI_Comm comm , int maxindegree , int sources [ ] , int sourceweights [ ] , int maxoutdegree , int destinations [ ] , int destweights [ ] ) ; # 1330 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Improbe ( int source , int tag , MPI_Comm comm , int * flag , MPI_Message * message , MPI_Status * status ) ; int MPI_Imrecv ( void * buf , int count , MPI_Datatype datatype , MPI_Message * message , MPI_Request * request ) ; int MPI_Mprobe ( int source , int tag , MPI_Comm comm , MPI_Message * message , MPI_Status * status ) ; int MPI_Mrecv ( void * buf , int count , MPI_Datatype datatype , MPI_Message * message , MPI_Status * status ) ; # 1339 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Comm_idup ( MPI_Comm comm , MPI_Comm * newcomm , MPI_Request * request ) ; int MPI_Ibarrier ( MPI_Comm comm , MPI_Request * request ) ; int MPI_Ibcast ( void * buffer , int count , MPI_Datatype datatype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Igather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Igatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iscatter ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iscatterv ( const void * sendbuf , const int sendcounts [ ] , const int displs [ ] , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iallgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iallgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ialltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ialltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ialltoallw ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ireduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iallreduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ireduce_scatter ( const void * sendbuf , void * recvbuf , const int recvcounts [ ] , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ireduce_scatter_block ( const void * sendbuf , void * recvbuf , int recvcount , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iexscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; # 1400 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Ineighbor_allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ineighbor_allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ineighbor_alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ineighbor_alltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ineighbor_alltoallw ( const void * sendbuf , const int sendcounts [ ] , const MPI_Aint sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const MPI_Aint rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm , MPI_Request * request ) ; int MPI_Neighbor_allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Neighbor_allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Neighbor_alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Neighbor_alltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Neighbor_alltoallw ( const void * sendbuf , const int sendcounts [ ] , const MPI_Aint sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const MPI_Aint rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm ) ; # 1448 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Comm_split_type ( MPI_Comm comm , int split_type , int key , MPI_Info info , MPI_Comm * newcomm ) ; # 1451 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Get_elements_x ( const MPI_Status * status , MPI_Datatype datatype , MPI_Count * count ) ; int MPI_Status_set_elements_x ( MPI_Status * status , MPI_Datatype datatype , MPI_Count count ) ; int MPI_Type_get_extent_x ( MPI_Datatype datatype , MPI_Count * lb , MPI_Count * extent ) ; int MPI_Type_get_true_extent_x ( MPI_Datatype datatype , MPI_Count * lb , MPI_Count * extent ) ; int MPI_Type_size_x ( MPI_Datatype datatype , MPI_Count * size ) ; # 1458 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Comm_create_group ( MPI_Comm comm , MPI_Group group , int tag , MPI_Comm * newcomm ) ; # 1462 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPIX_Comm_group_failed ( MPI_Comm comm , MPI_Group * failed_group ) ; int MPIX_Comm_remote_group_failed ( MPI_Comm comm , MPI_Group * failed_group ) ; int MPIX_Comm_reenable_anysource ( MPI_Comm comm , MPI_Group * failed_group ) ; # 1469 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 1471 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_T_init_thread ( int required , int * provided ) ; int MPI_T_finalize ( void ) ; int MPI_T_enum_get_info ( MPI_T_enum enumtype , int * num , char * name , int * name_len ) ; int MPI_T_enum_get_item ( MPI_T_enum enumtype , int indx , int * value , char * name , int * name_len ) ; int MPI_T_cvar_get_num ( int * num_cvar ) ; int MPI_T_cvar_get_info ( int cvar_index , char * name , int * name_len , int * verbosity , MPI_Datatype * datatype , MPI_T_enum * enumtype , char * desc , int * desc_len , int * binding , int * scope ) ; int MPI_T_cvar_handle_alloc ( int cvar_index , void * obj_handle , MPI_T_cvar_handle * handle , int * count ) ; int MPI_T_cvar_handle_free ( MPI_T_cvar_handle * handle ) ; int MPI_T_cvar_read ( MPI_T_cvar_handle handle , void * buf ) ; int MPI_T_cvar_write ( MPI_T_cvar_handle handle , void * buf ) ; int MPI_T_pvar_get_num ( int * num_pvar ) ; int MPI_T_pvar_get_info ( int pvar_index , char * name , int * name_len , int * verbosity , int * var_class , MPI_Datatype * datatype , MPI_T_enum * enumtype , char * desc , int * desc_len , int * binding , int * readonly , int * continuous , int * atomic ) ; int MPI_T_pvar_session_create ( MPI_T_pvar_session * session ) ; int MPI_T_pvar_session_free ( MPI_T_pvar_session * session ) ; int MPI_T_pvar_handle_alloc ( MPI_T_pvar_session session , int pvar_index , void * obj_handle , MPI_T_pvar_handle * handle , int * count ) ; int MPI_T_pvar_handle_free ( MPI_T_pvar_session session , MPI_T_pvar_handle * handle ) ; int MPI_T_pvar_start ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int MPI_T_pvar_stop ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int MPI_T_pvar_read ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int MPI_T_pvar_write ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int MPI_T_pvar_reset ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int MPI_T_pvar_readreset ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int MPI_T_category_get_num ( int * num_cat ) ; int MPI_T_category_get_info ( int cat_index , char * name , int * name_len , char * desc , int * desc_len , int * num_cvars , int * num_pvars , int * num_categories ) ; int MPI_T_category_get_cvars ( int cat_index , int len , int indices [ ] ) ; int MPI_T_category_get_pvars ( int cat_index , int len , int indices [ ] ) ; int MPI_T_category_get_categories ( int cat_index , int len , int indices [ ] ) ; int MPI_T_category_changed ( int * stamp ) ; # 1513 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 1515 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Send ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int PMPI_Recv ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Status * status ) ; int PMPI_Get_count ( const MPI_Status * status , MPI_Datatype datatype , int * count ) ; int PMPI_Bsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int PMPI_Ssend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int PMPI_Rsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int PMPI_Buffer_attach ( void * buffer , int size ) ; int PMPI_Buffer_detach ( void * buffer_addr , int * size ) ; int PMPI_Isend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ibsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Issend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Irsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Irecv ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Wait ( MPI_Request * request , MPI_Status * status ) ; int PMPI_Test ( MPI_Request * request , int * flag , MPI_Status * status ) ; int PMPI_Request_free ( MPI_Request * request ) ; int PMPI_Waitany ( int count , MPI_Request array_of_requests [ ] , int * indx , MPI_Status * status ) ; int PMPI_Testany ( int count , MPI_Request array_of_requests [ ] , int * indx , int * flag , MPI_Status * status ) ; int PMPI_Waitall ( int count , MPI_Request array_of_requests [ ] , MPI_Status array_of_statuses [ ] ) ; int PMPI_Testall ( int count , MPI_Request array_of_requests [ ] , int * flag , MPI_Status array_of_statuses [ ] ) ; int PMPI_Waitsome ( int incount , MPI_Request array_of_requests [ ] , int * outcount , int array_of_indices [ ] , MPI_Status array_of_statuses [ ] ) ; int PMPI_Testsome ( int incount , MPI_Request array_of_requests [ ] , int * outcount , int array_of_indices [ ] , MPI_Status array_of_statuses [ ] ) ; int PMPI_Iprobe ( int source , int tag , MPI_Comm comm , int * flag , MPI_Status * status ) ; int PMPI_Probe ( int source , int tag , MPI_Comm comm , MPI_Status * status ) ; int PMPI_Cancel ( MPI_Request * request ) ; int PMPI_Test_cancelled ( const MPI_Status * status , int * flag ) ; int PMPI_Send_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Bsend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ssend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Rsend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Recv_init ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Start ( MPI_Request * request ) ; int PMPI_Startall ( int count , MPI_Request array_of_requests [ ] ) ; int PMPI_Sendrecv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , int dest , int sendtag , void * recvbuf , int recvcount , MPI_Datatype recvtype , int source , int recvtag , MPI_Comm comm , MPI_Status * status ) ; int PMPI_Sendrecv_replace ( void * buf , int count , MPI_Datatype datatype , int dest , int sendtag , int source , int recvtag , MPI_Comm comm , MPI_Status * status ) ; int PMPI_Type_contiguous ( int count , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_vector ( int count , int blocklength , int stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_hvector ( int count , int blocklength , MPI_Aint stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_indexed ( int count , const int * array_of_blocklengths , const int * array_of_displacements , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_hindexed ( int count , const int * array_of_blocklengths , const MPI_Aint * array_of_displacements , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_struct ( int count , const int * array_of_blocklengths , const MPI_Aint * array_of_displacements , const MPI_Datatype * array_of_types , MPI_Datatype * newtype ) ; int PMPI_Address ( const void * location , MPI_Aint * address ) ; int PMPI_Type_extent ( MPI_Datatype datatype , MPI_Aint * extent ) ; int PMPI_Type_size ( MPI_Datatype datatype , int * size ) ; int PMPI_Type_lb ( MPI_Datatype datatype , MPI_Aint * displacement ) ; int PMPI_Type_ub ( MPI_Datatype datatype , MPI_Aint * displacement ) ; int PMPI_Type_commit ( MPI_Datatype * datatype ) ; int PMPI_Type_free ( MPI_Datatype * datatype ) ; int PMPI_Get_elements ( const MPI_Status * status , MPI_Datatype datatype , int * count ) ; int PMPI_Pack ( const void * inbuf , int incount , MPI_Datatype datatype , void * outbuf , int outsize , int * position , MPI_Comm comm ) ; int PMPI_Unpack ( const void * inbuf , int insize , int * position , void * outbuf , int outcount , MPI_Datatype datatype , MPI_Comm comm ) ; int PMPI_Pack_size ( int incount , MPI_Datatype datatype , MPI_Comm comm , int * size ) ; int PMPI_Barrier ( MPI_Comm comm ) ; int PMPI_Bcast ( void * buffer , int count , MPI_Datatype datatype , int root , MPI_Comm comm ) ; int PMPI_Gather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int PMPI_Gatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * displs , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int PMPI_Scatter ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int PMPI_Scatterv ( const void * sendbuf , const int * sendcounts , const int * displs , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int PMPI_Allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * displs , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Alltoallv ( const void * sendbuf , const int * sendcounts , const int * sdispls , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * rdispls , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Alltoallw ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm ) ; int PMPI_Exscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Reduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , int root , MPI_Comm comm ) ; int PMPI_Op_create ( MPI_User_function * user_fn , int commute , MPI_Op * op ) ; int PMPI_Op_free ( MPI_Op * op ) ; int PMPI_Allreduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Reduce_scatter ( const void * sendbuf , void * recvbuf , const int recvcounts [ ] , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Scan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Group_size ( MPI_Group group , int * size ) ; int PMPI_Group_rank ( MPI_Group group , int * rank ) ; int PMPI_Group_translate_ranks ( MPI_Group group1 , int n , const int ranks1 [ ] , MPI_Group group2 , int ranks2 [ ] ) ; int PMPI_Group_compare ( MPI_Group group1 , MPI_Group group2 , int * result ) ; int PMPI_Comm_group ( MPI_Comm comm , MPI_Group * group ) ; int PMPI_Group_union ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int PMPI_Group_intersection ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int PMPI_Group_difference ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int PMPI_Group_incl ( MPI_Group group , int n , const int ranks [ ] , MPI_Group * newgroup ) ; int PMPI_Group_excl ( MPI_Group group , int n , const int ranks [ ] , MPI_Group * newgroup ) ; int PMPI_Group_range_incl ( MPI_Group group , int n , int ranges [ ] [ 3 ] , MPI_Group * newgroup ) ; int PMPI_Group_range_excl ( MPI_Group group , int n , int ranges [ ] [ 3 ] , MPI_Group * newgroup ) ; int PMPI_Group_free ( MPI_Group * group ) ; int PMPI_Comm_size ( MPI_Comm comm , int * size ) ; int PMPI_Comm_rank ( MPI_Comm comm , int * rank ) ; int PMPI_Comm_compare ( MPI_Comm comm1 , MPI_Comm comm2 , int * result ) ; int PMPI_Comm_dup ( MPI_Comm comm , MPI_Comm * newcomm ) ; int PMPI_Comm_dup_with_info ( MPI_Comm comm , MPI_Info info , MPI_Comm * newcomm ) ; int PMPI_Comm_create ( MPI_Comm comm , MPI_Group group , MPI_Comm * newcomm ) ; int PMPI_Comm_split ( MPI_Comm comm , int color , int key , MPI_Comm * newcomm ) ; int PMPI_Comm_free ( MPI_Comm * comm ) ; int PMPI_Comm_test_inter ( MPI_Comm comm , int * flag ) ; int PMPI_Comm_remote_size ( MPI_Comm comm , int * size ) ; int PMPI_Comm_remote_group ( MPI_Comm comm , MPI_Group * group ) ; int PMPI_Intercomm_create ( MPI_Comm local_comm , int local_leader , MPI_Comm peer_comm , int remote_leader , int tag , MPI_Comm * newintercomm ) ; int PMPI_Intercomm_merge ( MPI_Comm intercomm , int high , MPI_Comm * newintracomm ) ; int PMPI_Keyval_create ( MPI_Copy_function * copy_fn , MPI_Delete_function * delete_fn , int * keyval , void * extra_state ) ; int PMPI_Keyval_free ( int * keyval ) ; int PMPI_Attr_put ( MPI_Comm comm , int keyval , void * attribute_val ) ; int PMPI_Attr_get ( MPI_Comm comm , int keyval , void * attribute_val , int * flag ) ; int PMPI_Attr_delete ( MPI_Comm comm , int keyval ) ; int PMPI_Topo_test ( MPI_Comm comm , int * status ) ; int PMPI_Cart_create ( MPI_Comm comm_old , int ndims , const int dims [ ] , const int periods [ ] , int reorder , MPI_Comm * comm_cart ) ; int PMPI_Dims_create ( int nnodes , int ndims , int dims [ ] ) ; int PMPI_Graph_create ( MPI_Comm comm_old , int nnodes , const int indx [ ] , const int edges [ ] , int reorder , MPI_Comm * comm_graph ) ; int PMPI_Graphdims_get ( MPI_Comm comm , int * nnodes , int * nedges ) ; int PMPI_Graph_get ( MPI_Comm comm , int maxindex , int maxedges , int indx [ ] , int edges [ ] ) ; int PMPI_Cartdim_get ( MPI_Comm comm , int * ndims ) ; int PMPI_Cart_get ( MPI_Comm comm , int maxdims , int dims [ ] , int periods [ ] , int coords [ ] ) ; int PMPI_Cart_rank ( MPI_Comm comm , const int coords [ ] , int * rank ) ; int PMPI_Cart_coords ( MPI_Comm comm , int rank , int maxdims , int coords [ ] ) ; int PMPI_Graph_neighbors_count ( MPI_Comm comm , int rank , int * nneighbors ) ; int PMPI_Graph_neighbors ( MPI_Comm comm , int rank , int maxneighbors , int neighbors [ ] ) ; int PMPI_Cart_shift ( MPI_Comm comm , int direction , int disp , int * rank_source , int * rank_dest ) ; int PMPI_Cart_sub ( MPI_Comm comm , const int remain_dims [ ] , MPI_Comm * newcomm ) ; int PMPI_Cart_map ( MPI_Comm comm , int ndims , const int dims [ ] , const int periods [ ] , int * newrank ) ; int PMPI_Graph_map ( MPI_Comm comm , int nnodes , const int indx [ ] , const int edges [ ] , int * newrank ) ; int PMPI_Get_processor_name ( char * name , int * resultlen ) ; int PMPI_Get_version ( int * version , int * subversion ) ; int PMPI_Get_library_version ( char * version , int * resultlen ) ; int PMPI_Errhandler_create ( MPI_Handler_function * function , MPI_Errhandler * errhandler ) ; int PMPI_Errhandler_set ( MPI_Comm comm , MPI_Errhandler errhandler ) ; int PMPI_Errhandler_get ( MPI_Comm comm , MPI_Errhandler * errhandler ) ; int PMPI_Errhandler_free ( MPI_Errhandler * errhandler ) ; int PMPI_Error_string ( int errorcode , char * string , int * resultlen ) ; int PMPI_Error_class ( int errorcode , int * errorclass ) ; double PMPI_Wtime ( void ) ; double PMPI_Wtick ( void ) ; int PMPI_Init ( int * argc , char * * * argv ) ; int PMPI_Finalize ( void ) ; int PMPI_Initialized ( int * flag ) ; int PMPI_Abort ( MPI_Comm comm , int errorcode ) ; # 1721 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Pcontrol ( const int level , ... ) ; # 1724 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Close_port ( const char * port_name ) ; int PMPI_Comm_accept ( const char * port_name , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * newcomm ) ; int PMPI_Comm_connect ( const char * port_name , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * newcomm ) ; int PMPI_Comm_disconnect ( MPI_Comm * comm ) ; int PMPI_Comm_get_parent ( MPI_Comm * parent ) ; int PMPI_Comm_join ( int fd , MPI_Comm * intercomm ) ; int PMPI_Comm_spawn ( const char * command , char * argv [ ] , int maxprocs , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * intercomm , int array_of_errcodes [ ] ) ; int PMPI_Comm_spawn_multiple ( int count , char * array_of_commands [ ] , char * * array_of_argv [ ] , const int array_of_maxprocs [ ] , const MPI_Info array_of_info [ ] , int root , MPI_Comm comm , MPI_Comm * intercomm , int array_of_errcodes [ ] ) ; int PMPI_Lookup_name ( const char * service_name , MPI_Info info , char * port_name ) ; int PMPI_Open_port ( MPI_Info info , char * port_name ) ; int PMPI_Publish_name ( const char * service_name , MPI_Info info , const char * port_name ) ; int PMPI_Unpublish_name ( const char * service_name , MPI_Info info , const char * port_name ) ; int PMPI_Comm_set_info ( MPI_Comm comm , MPI_Info info ) ; int PMPI_Comm_get_info ( MPI_Comm comm , MPI_Info * info ) ; # 1745 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win ) ; int PMPI_Get ( void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win ) ; int PMPI_Put ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win ) ; int PMPI_Win_complete ( MPI_Win win ) ; int PMPI_Win_create ( void * base , MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , MPI_Win * win ) ; int PMPI_Win_fence ( int assert , MPI_Win win ) ; int PMPI_Win_free ( MPI_Win * win ) ; int PMPI_Win_get_group ( MPI_Win win , MPI_Group * group ) ; int PMPI_Win_lock ( int lock_type , int rank , int assert , MPI_Win win ) ; int PMPI_Win_post ( MPI_Group group , int assert , MPI_Win win ) ; int PMPI_Win_start ( MPI_Group group , int assert , MPI_Win win ) ; int PMPI_Win_test ( MPI_Win win , int * flag ) ; int PMPI_Win_unlock ( int rank , MPI_Win win ) ; int PMPI_Win_wait ( MPI_Win win ) ; # 1769 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Win_allocate ( MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , void * baseptr , MPI_Win * win ) ; int PMPI_Win_allocate_shared ( MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , void * baseptr , MPI_Win * win ) ; int PMPI_Win_shared_query ( MPI_Win win , int rank , MPI_Aint * size , int * disp_unit , void * baseptr ) ; int PMPI_Win_create_dynamic ( MPI_Info info , MPI_Comm comm , MPI_Win * win ) ; int PMPI_Win_attach ( MPI_Win win , void * base , MPI_Aint size ) ; int PMPI_Win_detach ( MPI_Win win , const void * base ) ; int PMPI_Win_get_info ( MPI_Win win , MPI_Info * info_used ) ; int PMPI_Win_set_info ( MPI_Win win , MPI_Info info ) ; int PMPI_Get_accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , void * result_addr , int result_count , MPI_Datatype result_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win ) ; int PMPI_Fetch_and_op ( const void * origin_addr , void * result_addr , MPI_Datatype datatype , int target_rank , MPI_Aint target_disp , MPI_Op op , MPI_Win win ) ; int PMPI_Compare_and_swap ( const void * origin_addr , const void * compare_addr , void * result_addr , MPI_Datatype datatype , int target_rank , MPI_Aint target_disp , MPI_Win win ) ; int PMPI_Rput ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win , MPI_Request * request ) ; int PMPI_Rget ( void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win , MPI_Request * request ) ; int PMPI_Raccumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win , MPI_Request * request ) ; int PMPI_Rget_accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , void * result_addr , int result_count , MPI_Datatype result_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win , MPI_Request * request ) ; int PMPI_Win_lock_all ( int assert , MPI_Win win ) ; int PMPI_Win_unlock_all ( MPI_Win win ) ; int PMPI_Win_flush ( int rank , MPI_Win win ) ; int PMPI_Win_flush_all ( MPI_Win win ) ; int PMPI_Win_flush_local ( int rank , MPI_Win win ) ; int PMPI_Win_flush_local_all ( MPI_Win win ) ; int PMPI_Win_sync ( MPI_Win win ) ; int PMPI_Add_error_class ( int * errorclass ) ; int PMPI_Add_error_code ( int errorclass , int * errorcode ) ; int PMPI_Add_error_string ( int errorcode , const char * string ) ; int PMPI_Comm_call_errhandler ( MPI_Comm comm , int errorcode ) ; int PMPI_Comm_create_keyval ( MPI_Comm_copy_attr_function * comm_copy_attr_fn , MPI_Comm_delete_attr_function * comm_delete_attr_fn , int * comm_keyval , void * extra_state ) ; int PMPI_Comm_delete_attr ( MPI_Comm comm , int comm_keyval ) ; int PMPI_Comm_free_keyval ( int * comm_keyval ) ; int PMPI_Comm_get_attr ( MPI_Comm comm , int comm_keyval , void * attribute_val , int * flag ) ; int PMPI_Comm_get_name ( MPI_Comm comm , char * comm_name , int * resultlen ) ; int PMPI_Comm_set_attr ( MPI_Comm comm , int comm_keyval , void * attribute_val ) ; int PMPI_Comm_set_name ( MPI_Comm comm , const char * comm_name ) ; int PMPI_File_call_errhandler ( MPI_File fh , int errorcode ) ; int PMPI_Grequest_complete ( MPI_Request request ) ; int PMPI_Grequest_start ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , void * extra_state , MPI_Request * request ) ; int PMPI_Init_thread ( int * argc , char * * * argv , int required , int * provided ) ; int PMPI_Is_thread_main ( int * flag ) ; int PMPI_Query_thread ( int * provided ) ; int PMPI_Status_set_cancelled ( MPI_Status * status , int flag ) ; int PMPI_Status_set_elements ( MPI_Status * status , MPI_Datatype datatype , int count ) ; int PMPI_Type_create_keyval ( MPI_Type_copy_attr_function * type_copy_attr_fn , MPI_Type_delete_attr_function * type_delete_attr_fn , int * type_keyval , void * extra_state ) ; int PMPI_Type_delete_attr ( MPI_Datatype datatype , int type_keyval ) ; int PMPI_Type_dup ( MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_free_keyval ( int * type_keyval ) ; int PMPI_Type_get_attr ( MPI_Datatype datatype , int type_keyval , void * attribute_val , int * flag ) ; int PMPI_Type_get_contents ( MPI_Datatype datatype , int max_integers , int max_addresses , int max_datatypes , int array_of_integers [ ] , MPI_Aint array_of_addresses [ ] , MPI_Datatype array_of_datatypes [ ] ) ; int PMPI_Type_get_envelope ( MPI_Datatype datatype , int * num_integers , int * num_addresses , int * num_datatypes , int * combiner ) ; int PMPI_Type_get_name ( MPI_Datatype datatype , char * type_name , int * resultlen ) ; int PMPI_Type_set_attr ( MPI_Datatype datatype , int type_keyval , void * attribute_val ) ; int PMPI_Type_set_name ( MPI_Datatype datatype , const char * type_name ) ; int PMPI_Type_match_size ( int typeclass , int size , MPI_Datatype * datatype ) ; int PMPI_Win_call_errhandler ( MPI_Win win , int errorcode ) ; int PMPI_Win_create_keyval ( MPI_Win_copy_attr_function * win_copy_attr_fn , MPI_Win_delete_attr_function * win_delete_attr_fn , int * win_keyval , void * extra_state ) ; int PMPI_Win_delete_attr ( MPI_Win win , int win_keyval ) ; int PMPI_Win_free_keyval ( int * win_keyval ) ; int PMPI_Win_get_attr ( MPI_Win win , int win_keyval , void * attribute_val , int * flag ) ; int PMPI_Win_get_name ( MPI_Win win , char * win_name , int * resultlen ) ; int PMPI_Win_set_attr ( MPI_Win win , int win_keyval , void * attribute_val ) ; int PMPI_Win_set_name ( MPI_Win win , const char * win_name ) ; # 1877 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Alloc_mem ( MPI_Aint size , MPI_Info info , void * baseptr ) ; int PMPI_Comm_create_errhandler ( MPI_Comm_errhandler_function * comm_errhandler_fn , MPI_Errhandler * errhandler ) ; int PMPI_Comm_get_errhandler ( MPI_Comm comm , MPI_Errhandler * errhandler ) ; int PMPI_Comm_set_errhandler ( MPI_Comm comm , MPI_Errhandler errhandler ) ; int PMPI_File_create_errhandler ( MPI_File_errhandler_function * file_errhandler_fn , MPI_Errhandler * errhandler ) ; int PMPI_File_get_errhandler ( MPI_File file , MPI_Errhandler * errhandler ) ; int PMPI_File_set_errhandler ( MPI_File file , MPI_Errhandler errhandler ) ; int PMPI_Finalized ( int * flag ) ; int PMPI_Free_mem ( void * base ) ; int PMPI_Get_address ( const void * location , MPI_Aint * address ) ; int PMPI_Info_create ( MPI_Info * info ) ; int PMPI_Info_delete ( MPI_Info info , const char * key ) ; int PMPI_Info_dup ( MPI_Info info , MPI_Info * newinfo ) ; int PMPI_Info_free ( MPI_Info * info ) ; int PMPI_Info_get ( MPI_Info info , const char * key , int valuelen , char * value , int * flag ) ; int PMPI_Info_get_nkeys ( MPI_Info info , int * nkeys ) ; int PMPI_Info_get_nthkey ( MPI_Info info , int n , char * key ) ; int PMPI_Info_get_valuelen ( MPI_Info info , const char * key , int * valuelen , int * flag ) ; int PMPI_Info_set ( MPI_Info info , const char * key , const char * value ) ; int PMPI_Pack_external ( const char datarep [ ] , const void * inbuf , int incount , MPI_Datatype datatype , void * outbuf , MPI_Aint outsize , MPI_Aint * position ) ; int PMPI_Pack_external_size ( const char datarep [ ] , int incount , MPI_Datatype datatype , MPI_Aint * size ) ; int PMPI_Request_get_status ( MPI_Request request , int * flag , MPI_Status * status ) ; int PMPI_Status_c2f ( const MPI_Status * c_status , MPI_Fint * f_status ) ; int PMPI_Status_f2c ( const MPI_Fint * f_status , MPI_Status * c_status ) ; int PMPI_Type_create_darray ( int size , int rank , int ndims , const int array_of_gsizes [ ] , const int array_of_distribs [ ] , const int array_of_dargs [ ] , const int array_of_psizes [ ] , int order , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_hindexed ( int count , const int array_of_blocklengths [ ] , const MPI_Aint array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_hvector ( int count , int blocklength , MPI_Aint stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_indexed_block ( int count , int blocklength , const int array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_hindexed_block ( int count , int blocklength , const MPI_Aint array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_resized ( MPI_Datatype oldtype , MPI_Aint lb , MPI_Aint extent , MPI_Datatype * newtype ) ; int PMPI_Type_create_struct ( int count , const int array_of_blocklengths [ ] , const MPI_Aint array_of_displacements [ ] , const MPI_Datatype array_of_types [ ] , MPI_Datatype * newtype ) ; int PMPI_Type_create_subarray ( int ndims , const int array_of_sizes [ ] , const int array_of_subsizes [ ] , const int array_of_starts [ ] , int order , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_get_extent ( MPI_Datatype datatype , MPI_Aint * lb , MPI_Aint * extent ) ; int PMPI_Type_get_true_extent ( MPI_Datatype datatype , MPI_Aint * true_lb , MPI_Aint * true_extent ) ; int PMPI_Unpack_external ( const char datarep [ ] , const void * inbuf , MPI_Aint insize , MPI_Aint * position , void * outbuf , int outcount , MPI_Datatype datatype ) ; int PMPI_Win_create_errhandler ( MPI_Win_errhandler_function * win_errhandler_fn , MPI_Errhandler * errhandler ) ; int PMPI_Win_get_errhandler ( MPI_Win win , MPI_Errhandler * errhandler ) ; int PMPI_Win_set_errhandler ( MPI_Win win , MPI_Errhandler errhandler ) ; # 1940 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Type_create_f90_integer ( int r , MPI_Datatype * newtype ) ; int PMPI_Type_create_f90_real ( int p , int r , MPI_Datatype * newtype ) ; int PMPI_Type_create_f90_complex ( int p , int r , MPI_Datatype * newtype ) ; # 1945 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Reduce_local ( const void * inbuf , void * inoutbuf , int count , MPI_Datatype datatype , MPI_Op op ) ; int PMPI_Op_commutative ( MPI_Op op , int * commute ) ; int PMPI_Reduce_scatter_block ( const void * sendbuf , void * recvbuf , int recvcount , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Dist_graph_create_adjacent ( MPI_Comm comm_old , int indegree , const int sources [ ] , const int sourceweights [ ] , int outdegree , const int destinations [ ] , const int destweights [ ] , MPI_Info info , int reorder , MPI_Comm * comm_dist_graph ) ; int PMPI_Dist_graph_create ( MPI_Comm comm_old , int n , const int sources [ ] , const int degrees [ ] , const int destinations [ ] , const int weights [ ] , MPI_Info info , int reorder , MPI_Comm * comm_dist_graph ) ; int PMPI_Dist_graph_neighbors_count ( MPI_Comm comm , int * indegree , int * outdegree , int * weighted ) ; int PMPI_Dist_graph_neighbors ( MPI_Comm comm , int maxindegree , int sources [ ] , int sourceweights [ ] , int maxoutdegree , int destinations [ ] , int destweights [ ] ) ; # 1964 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Improbe ( int source , int tag , MPI_Comm comm , int * flag , MPI_Message * message , MPI_Status * status ) ; int PMPI_Imrecv ( void * buf , int count , MPI_Datatype datatype , MPI_Message * message , MPI_Request * request ) ; int PMPI_Mprobe ( int source , int tag , MPI_Comm comm , MPI_Message * message , MPI_Status * status ) ; int PMPI_Mrecv ( void * buf , int count , MPI_Datatype datatype , MPI_Message * message , MPI_Status * status ) ; # 1973 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Comm_idup ( MPI_Comm comm , MPI_Comm * newcomm , MPI_Request * request ) ; int PMPI_Ibarrier ( MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ibcast ( void * buffer , int count , MPI_Datatype datatype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Igather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Igatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iscatter ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iscatterv ( const void * sendbuf , const int sendcounts [ ] , const int displs [ ] , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iallgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iallgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ialltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ialltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ialltoallw ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ireduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iallreduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ireduce_scatter ( const void * sendbuf , void * recvbuf , const int recvcounts [ ] , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ireduce_scatter_block ( const void * sendbuf , void * recvbuf , int recvcount , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iexscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; # 2035 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Ineighbor_allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ineighbor_allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ineighbor_alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ineighbor_alltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ineighbor_alltoallw ( const void * sendbuf , const int sendcounts [ ] , const MPI_Aint sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const MPI_Aint rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Neighbor_allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Neighbor_allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Neighbor_alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Neighbor_alltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Neighbor_alltoallw ( const void * sendbuf , const int sendcounts [ ] , const MPI_Aint sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const MPI_Aint rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm ) ; # 2084 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Comm_split_type ( MPI_Comm comm , int split_type , int key , MPI_Info info , MPI_Comm * newcomm ) ; # 2087 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Comm_create_group ( MPI_Comm comm , MPI_Group group , int tag , MPI_Comm * newcomm ) ; # 2090 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Get_elements_x ( const MPI_Status * status , MPI_Datatype datatype , MPI_Count * count ) ; int PMPI_Status_set_elements_x ( MPI_Status * status , MPI_Datatype datatype , MPI_Count count ) ; int PMPI_Type_get_extent_x ( MPI_Datatype datatype , MPI_Count * lb , MPI_Count * extent ) ; int PMPI_Type_get_true_extent_x ( MPI_Datatype datatype , MPI_Count * lb , MPI_Count * extent ) ; int PMPI_Type_size_x ( MPI_Datatype datatype , MPI_Count * size ) ; # 2097 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPIX_Comm_group_failed ( MPI_Comm comm , MPI_Group * failed_group ) ; int PMPIX_Comm_remote_group_failed ( MPI_Comm comm , MPI_Group * failed_group ) ; int PMPIX_Comm_reenable_anysource ( MPI_Comm comm , MPI_Group * failed_group ) ; # 2104 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 2106 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_T_init_thread ( int required , int * provided ) ; int PMPI_T_finalize ( void ) ; int PMPI_T_enum_get_info ( MPI_T_enum enumtype , int * num , char * name , int * name_len ) ; int PMPI_T_enum_get_item ( MPI_T_enum enumtype , int indx , int * value , char * name , int * name_len ) ; int PMPI_T_cvar_get_num ( int * num_cvar ) ; int PMPI_T_cvar_get_info ( int cvar_index , char * name , int * name_len , int * verbosity , MPI_Datatype * datatype , MPI_T_enum * enumtype , char * desc , int * desc_len , int * binding , int * scope ) ; int PMPI_T_cvar_handle_alloc ( int cvar_index , void * obj_handle , MPI_T_cvar_handle * handle , int * count ) ; int PMPI_T_cvar_handle_free ( MPI_T_cvar_handle * handle ) ; int PMPI_T_cvar_read ( MPI_T_cvar_handle handle , void * buf ) ; int PMPI_T_cvar_write ( MPI_T_cvar_handle handle , void * buf ) ; int PMPI_T_pvar_get_num ( int * num_pvar ) ; int PMPI_T_pvar_get_info ( int pvar_index , char * name , int * name_len , int * verbosity , int * var_class , MPI_Datatype * datatype , MPI_T_enum * enumtype , char * desc , int * desc_len , int * binding , int * readonly , int * continuous , int * atomic ) ; int PMPI_T_pvar_session_create ( MPI_T_pvar_session * session ) ; int PMPI_T_pvar_session_free ( MPI_T_pvar_session * session ) ; int PMPI_T_pvar_handle_alloc ( MPI_T_pvar_session session , int pvar_index , void * obj_handle , MPI_T_pvar_handle * handle , int * count ) ; int PMPI_T_pvar_handle_free ( MPI_T_pvar_session session , MPI_T_pvar_handle * handle ) ; int PMPI_T_pvar_start ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int PMPI_T_pvar_stop ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int PMPI_T_pvar_read ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int PMPI_T_pvar_write ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int PMPI_T_pvar_reset ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int PMPI_T_pvar_readreset ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int PMPI_T_category_get_num ( int * num_cat ) ; int PMPI_T_category_get_info ( int cat_index , char * name , int * name_len , char * desc , int * desc_len , int * num_cvars , int * num_pvars , int * num_categories ) ; int PMPI_T_category_get_cvars ( int cat_index , int len , int indices [ ] ) ; int PMPI_T_category_get_pvars ( int cat_index , int len , int indices [ ] ) ; int PMPI_T_category_get_categories ( int cat_index , int len , int indices [ ] ) ; int PMPI_T_category_changed ( int * stamp ) ; # 2145 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 2147 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 1 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 6 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 8 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 1 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 5 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 14 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 21 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 33 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 110 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 113 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 117 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_open ( MPI_Comm comm , const char * filename , int amode , MPI_Info info , MPI_File * fh ) ; int MPI_File_close ( MPI_File * fh ) ; int MPI_File_delete ( const char * filename , MPI_Info info ) ; int MPI_File_set_size ( MPI_File fh , MPI_Offset size ) ; int MPI_File_preallocate ( MPI_File fh , MPI_Offset size ) ; int MPI_File_get_size ( MPI_File fh , MPI_Offset * size ) ; int MPI_File_get_group ( MPI_File fh , MPI_Group * group ) ; int MPI_File_get_amode ( MPI_File fh , int * amode ) ; int MPI_File_set_info ( MPI_File fh , MPI_Info info ) ; int MPI_File_get_info ( MPI_File fh , MPI_Info * info_used ) ; # 130 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_set_view ( MPI_File fh , MPI_Offset disp , MPI_Datatype etype , MPI_Datatype filetype , const char * datarep , MPI_Info info ) ; int MPI_File_get_view ( MPI_File fh , MPI_Offset * disp , MPI_Datatype * etype , MPI_Datatype * filetype , char * datarep ) ; # 136 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_read_at ( MPI_File fh , MPI_Offset offset , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_read_at_all ( MPI_File fh , MPI_Offset offset , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_at ( MPI_File fh , MPI_Offset offset , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_at_all ( MPI_File fh , MPI_Offset offset , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; # 151 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_iread_at ( MPI_File fh , MPI_Offset offset , void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; int MPI_File_iwrite_at ( MPI_File fh , MPI_Offset offset , const void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; # 158 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_read ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_read_all ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_all ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; # 170 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 172 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_iread ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; int MPI_File_iwrite ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; # 177 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_seek ( MPI_File fh , MPI_Offset offset , int whence ) ; int MPI_File_get_position ( MPI_File fh , MPI_Offset * offset ) ; int MPI_File_get_byte_offset ( MPI_File fh , MPI_Offset offset , MPI_Offset * disp ) ; # 181 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_read_shared ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_shared ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_iread_shared ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; int MPI_File_iwrite_shared ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; int MPI_File_read_ordered ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_ordered ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_seek_shared ( MPI_File fh , MPI_Offset offset , int whence ) ; int MPI_File_get_position_shared ( MPI_File fh , MPI_Offset * offset ) ; # 197 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_read_at_all_begin ( MPI_File fh , MPI_Offset offset , void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_read_at_all_end ( MPI_File fh , void * buf , MPI_Status * status ) ; int MPI_File_write_at_all_begin ( MPI_File fh , MPI_Offset offset , const void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_write_at_all_end ( MPI_File fh , const void * buf , MPI_Status * status ) ; int MPI_File_read_all_begin ( MPI_File fh , void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_read_all_end ( MPI_File fh , void * buf , MPI_Status * status ) ; int MPI_File_write_all_begin ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_write_all_end ( MPI_File fh , const void * buf , MPI_Status * status ) ; int MPI_File_read_ordered_begin ( MPI_File fh , void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_read_ordered_end ( MPI_File fh , void * buf , MPI_Status * status ) ; int MPI_File_write_ordered_begin ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_write_ordered_end ( MPI_File fh , const void * buf , MPI_Status * status ) ; # 217 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_get_type_extent ( MPI_File fh , MPI_Datatype datatype , MPI_Aint * extent ) ; # 220 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_Register_datarep ( const char * datarep , MPI_Datarep_conversion_function * read_conversion_fn , MPI_Datarep_conversion_function * write_conversion_fn , MPI_Datarep_extent_function * dtype_file_extent_fn , void * extra_state ) ; # 225 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_set_atomicity ( MPI_File fh , int flag ) ; int MPI_File_get_atomicity ( MPI_File fh , int * flag ) ; int MPI_File_sync ( MPI_File fh ) ; # 230 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 236 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 253 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 263 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" MPI_File MPI_File_f2c ( MPI_Fint file ) ; MPI_Fint MPI_File_c2f ( MPI_File file ) ; # 289 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 321 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 324 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_open ( MPI_Comm , const char * , int , MPI_Info , MPI_File * ) ; int PMPI_File_close ( MPI_File * ) ; int PMPI_File_delete ( const char * , MPI_Info ) ; int PMPI_File_set_size ( MPI_File , MPI_Offset ) ; int PMPI_File_preallocate ( MPI_File , MPI_Offset ) ; int PMPI_File_get_size ( MPI_File , MPI_Offset * ) ; int PMPI_File_get_group ( MPI_File , MPI_Group * ) ; int PMPI_File_get_amode ( MPI_File , int * ) ; int PMPI_File_set_info ( MPI_File , MPI_Info ) ; int PMPI_File_get_info ( MPI_File , MPI_Info * ) ; # 336 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_set_view ( MPI_File , MPI_Offset , MPI_Datatype , MPI_Datatype , const char * , MPI_Info ) ; int PMPI_File_get_view ( MPI_File , MPI_Offset * , MPI_Datatype * , MPI_Datatype * , char * ) ; # 342 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_read_at ( MPI_File , MPI_Offset , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_read_at_all ( MPI_File , MPI_Offset , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_at ( MPI_File , MPI_Offset , const void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_at_all ( MPI_File , MPI_Offset , const void * , int , MPI_Datatype , MPI_Status * ) ; # 358 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 360 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_iread_at ( MPI_File , MPI_Offset , void * , int , MPI_Datatype , MPI_Request * ) ; int PMPI_File_iwrite_at ( MPI_File , MPI_Offset , const void * , int , MPI_Datatype , MPI_Request * ) ; # 367 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_read ( MPI_File , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_read_all ( MPI_File , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write ( MPI_File , const void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_all ( MPI_File , const void * , int , MPI_Datatype , MPI_Status * ) ; # 379 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 381 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_iread ( MPI_File , void * , int , MPI_Datatype , MPI_Request * ) ; int PMPI_File_iwrite ( MPI_File , const void * , int , MPI_Datatype , MPI_Request * ) ; # 386 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_seek ( MPI_File , MPI_Offset , int ) ; int PMPI_File_get_position ( MPI_File , MPI_Offset * ) ; int PMPI_File_get_byte_offset ( MPI_File , MPI_Offset , MPI_Offset * ) ; # 390 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_read_shared ( MPI_File , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_shared ( MPI_File , const void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_iread_shared ( MPI_File , void * , int , MPI_Datatype , MPI_Request * ) ; int PMPI_File_iwrite_shared ( MPI_File , const void * , int , MPI_Datatype , MPI_Request * ) ; int PMPI_File_read_ordered ( MPI_File , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_ordered ( MPI_File , const void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_seek_shared ( MPI_File , MPI_Offset , int ) ; int PMPI_File_get_position_shared ( MPI_File , MPI_Offset * ) ; # 408 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_read_at_all_begin ( MPI_File , MPI_Offset , void * , int , MPI_Datatype ) ; int PMPI_File_read_at_all_end ( MPI_File , void * , MPI_Status * ) ; int PMPI_File_write_at_all_begin ( MPI_File , MPI_Offset , const void * , int , MPI_Datatype ) ; int PMPI_File_write_at_all_end ( MPI_File , const void * , MPI_Status * ) ; int PMPI_File_read_all_begin ( MPI_File , void * , int , MPI_Datatype ) ; int PMPI_File_read_all_end ( MPI_File , void * , MPI_Status * ) ; int PMPI_File_write_all_begin ( MPI_File , const void * , int , MPI_Datatype ) ; int PMPI_File_write_all_end ( MPI_File , const void * , MPI_Status * ) ; int PMPI_File_read_ordered_begin ( MPI_File , void * , int , MPI_Datatype ) ; int PMPI_File_read_ordered_end ( MPI_File , void * , MPI_Status * ) ; int PMPI_File_write_ordered_begin ( MPI_File , const void * , int , MPI_Datatype ) ; int PMPI_File_write_ordered_end ( MPI_File , const void * , MPI_Status * ) ; # 430 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_get_type_extent ( MPI_File , MPI_Datatype , MPI_Aint * ) ; # 433 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_Register_datarep ( const char * , MPI_Datarep_conversion_function * , MPI_Datarep_conversion_function * , MPI_Datarep_extent_function * , void * ) ; # 440 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_set_atomicity ( MPI_File , int ) ; int PMPI_File_get_atomicity ( MPI_File , int * ) ; int PMPI_File_sync ( MPI_File ) ; # 445 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 462 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" MPI_File PMPI_File_f2c ( MPI_Fint ) ; MPI_Fint PMPI_File_c2f ( MPI_File ) ; # 482 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 2160 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 2180 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPIX_Grequest_class ; int MPIX_Grequest_class_create ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , MPIX_Grequest_poll_function * poll_fn , MPIX_Grequest_wait_function * wait_fn , MPIX_Grequest_class * greq_class ) ; int MPIX_Grequest_class_allocate ( MPIX_Grequest_class greq_class , void * extra_state , MPI_Request * request ) ; int MPIX_Grequest_start ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , MPIX_Grequest_poll_function * poll_fn , MPIX_Grequest_wait_function * wait_fn , void * extra_state , MPI_Request * request ) ; # 2197 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" struct mpixi_mutex_s ; typedef struct mpixi_mutex_s * MPIX_Mutex ; int MPIX_Mutex_create ( int count , MPI_Comm comm , MPIX_Mutex * hdl ) ; int MPIX_Mutex_free ( MPIX_Mutex * hdl ) ; int MPIX_Mutex_lock ( MPIX_Mutex hdl , int mutex , int proc ) ; int MPIX_Mutex_unlock ( MPIX_Mutex hdl , int mutex , int proc ) ; # 2207 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPIX_Grequest_class_create ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , MPIX_Grequest_poll_function * poll_fn , MPIX_Grequest_wait_function * wait_fn , MPIX_Grequest_class * greq_class ) ; int PMPIX_Grequest_class_allocate ( MPIX_Grequest_class greq_class , void * extra_state , MPI_Request * request ) ; int PMPIX_Grequest_start ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , MPIX_Grequest_poll_function * poll_fn , MPIX_Grequest_wait_function * wait_fn , void * extra_state , MPI_Request * request ) ; # 2223 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPIX_Mutex_create ( int count , MPI_Comm comm , MPIX_Mutex * hdl ) ; int PMPIX_Mutex_free ( MPIX_Mutex * hdl ) ; int PMPIX_Mutex_lock ( MPIX_Mutex hdl , int mutex , int proc ) ; int PMPIX_Mutex_unlock ( MPIX_Mutex hdl , int mutex , int proc ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in [] Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Checking for size of type: MPI_Comm Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.types/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.types/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.types/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.libraries/conftest' Popping language C Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/scratch/petsc-kMEe3S/config.libraries/conftest.cc", line 5: warning: variable "ierr" was set but never used static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: CC -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language Cxx Popping language Cxx Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" end Checking for functions [] in library [] [] Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language FC Checking for functions [] in library [] [] Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.libraries -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: ftn -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language FC Popping language FC Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Executing: cc -show stdout: Known Variables: ACC50FLAGS ACC901FLAGS ACCAUTOPAR =1 ACCCACHE =-x 163 0x100 ACCCGDEF ACCCGFLAGS ACCDEBUG ACCDEF ACCDEFDEF ACCELFLAG ACCELS ACCEXTRACTLIB ACCEXTRACTLIBSET ACCEXTRACTLIBSW ACCEXTRACTTOC ACCFEFLAGS ACCFLAGS ACCLIB =-laccapid ACCLIB2 ACCLINK ACCLLVM ACCPREFIX ACCRELOC ACCREQUIRED ACTTPVAL =-tp bulldozer ADDEHFRAME ALIASMODE =-x 2 0x400 ALLOCATABLE03 Use Fortran 2003 allocatable semantics ANYCUF =0 AOPTFLAG =-x 176 0x140000 -x 177 0x0202007f APPENDMOD =1 APPENDTOOL Name of object file append module =pgappend AS Name of assembler program =as ASARGS Arguments to assembler ASDIR Directory containing assembler program =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin ASMCOMMAND Internal command to process assembler file =asm ASMKEY =1 ASMONLY Compile and assemble, do not link ASMSUFFIX Suffix of assembler file =s ASMSUFFIXES Suffix allowed for assembler file =s ASSUMETAANALYSIS ASTYPE What type of object file to produce =ELF [COFF ELF AOUT] ATHLON =1 AUTOINLINE AUTOLEVELS =10 AUTOMAXFUNCSIZE =100 AUTOMAXTOTALSIZE =8000 AVX =1 AVX2 BADCUDALIB =0 BLANKCUDALIB =0 BLTINLIBS BMODE =-x 123 4 C99 =-x 123 0x80000000 CARGS Switches to C compiler =-x 123 0x80000000 -x 123 4 -x 2 0x400 -x 119 0x20 -def __pgnu_vsn=40301 -alwaysinline /opt/pgi/14.2.0/linux86-64/14.2/lib/libintrinsics.il 4 CCOMP Name of the C compiler =pgc CCOMPDIR Directory containing the C compiler =/opt/pgi/14.2.0/linux86-64/14.2/bin CEXT Name of the C extractor for inlining =pgc_ex CEXTARGS Arguments for extracting =-x 14 0x80 CGARGS Code Generation switches to native compiler =-x 120 0x200000 -x 70 0x40000000 -y 189 0x4000000 CHECKCUDALIB CLTPVAL =-tp bulldozer COMPBASE = COMPBASE32 =/opt/pgi/14.2.0 COMPBASE64 =/opt/pgi/14.2.0 COMPBBIN =bin COMPBIN Compiler binary directory =/opt/pgi/14.2.0/linux86-64/14.2/bin COMPGCCINCDIR =include-gcc44 COMPGLIBDIR COMPGLIBLFDIR COMPILEONLY Compile, do not assemble COMPINCDIR Compiler include subdirectory =include-gcc44 include COMPLIB Compiler library directory =/opt/pgi/14.2.0/linux86-64/14.2/libso COMPLIBDIR Compiler library subdirectory =lib COMPLIBLF COMPLIBLFDIR Compiler library subdirectory for large file support COMPLIBMP COMPLIBOBJ =/opt/pgi/14.2.0/linux86-64/14.2/libso COMPLIBSO =/opt/pgi/14.2.0/linux86-64/14.2/libso COMPLIBSTATIC =/opt/pgi/14.2.0/linux86-64/14.2/lib COMPLIBSUBDIR =libso COMPSUBBIN Subdirectory from which to get compilers COMPSYS = COMPUTECAP =2x 3x COMPUTECAPS =2x 3x COMPVER =14.2 CONCUR Add multiprocessor thread libraries =YES CONCURCOMPILE Compiling with -Mconcur or -mp CONCURSW Add multiprocessor thread libraries =YES CPP =pgCC CPP1ARGS =--gnu_version=40301 -D__pgnu_vsn=40301 CPP2ARGS =-gnuvsn 40301 -x 69 0x200 CPPASC CPPASCPP =C cpp cc cxx c++ CPPCOMPCOMMANDS C++ compile commands =nocpp CPPEXTCOMMANDS C++ extract commands =nocpp CPPLDARGS CPPLIB CPPSTDLIBS CPPSUFFIX Suffixes to be compiled by C++ compiler =cpp CRTL =-lnspgc -lpgc CSUFFIX Suffixes to be compiled by C compiler =c i CUCOMMANDS Commands to run for CUDA files CUDAEMU CUDAFORBLASSUF CUDA Fortran CUBLAS library suffix set when using CUDA 4.0 CUDAFORSUF CUDA Fortran library suffix set when using CUDA 4.0 =4 CUDALIBDIR =/opt/pgi/14.2.0/linux86-64/2014/cuda/5.0/lib64 CUDALIBDIRNAME =lib64 CUDANEEDED =0 CUDAROOT CUDARPATH CUDARPATHNEEDED =0 CUDARTLIBS =cudart CUDASITELIB CUDAVERSION =5.0 CUFSUFFIX CUDA Fortran suffixes to be compiled by f90 compiler =CUF cuf CUFX =cufx CZCCFF =-cz DDEFACCEL DDEFNOOPENMP DDEFNOSGIMP DEBUG Debug setting DEBUG2 Debug dwarf level DEBUG2DEF Debug debug dwarf level DEBUGERROR DEBUGFLAG DEBUGSET DEF901ACC DEFACC =-x 176 0x100 -x 186 0x20000 -x 176 0x100 -x 176 0x100 -x 189 4 -x 189 0x800 DEFACCEL =tesla host DEFACCRELOC DEFAS Name of assembler program =as DEFASARGS DEFASDIR =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin DEFASTYPE =ELF DEFAULTCAPFLAG =-x 176 0x100 -x 186 0x20000 -x 176 0x100 -x 176 0x100 -x 189 4 -x 189 0x800 DEFAULTCPPASCPP =C cpp cc cxx c++ DEFBMODE =-x 123 4 DEFC99 =1 DEFCACHESIZE DEFCARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 DEFCCOMPDIR =/opt/pgi/14.2.0/linux86-64/14.2/bin DEFCEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 DEFCOMMON =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 DEFCPPARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 DEFCPPDEFS =__PGI DEFCPPINC =/opt/pgi/14.2.0/linux86-64/14.2/include/CC DEFCPPLDARGS DEFCPPLIB =Cz DEFCPPLIBS DEFCPPSTDLIBS DEFCUDARPATH DEFCUDAVERSION =5.0 DEFDEFACCRELOC DEFDEFDEFACCRELOC DEFDEFS =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __THROW= __extension__= __amd_64__amd64__ __k8 __k8__ __SSE__ __MMX__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ DEFF901ARGS =-nohpf -nostatic -x 19 0x400000 -quad -x 59 4 -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124 0x1000 -tp bulldozer -x 57 0xfb0000 -x 58 0x78031040 DEFF902ARGS =-x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 -x 124 0x1400 -y 15 2 -x 57 0x3b0000 -x 58 0x48000000 DEFF902COMMON =-x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 -x 124 0x1400 -y 15 2 DEFF90COMMON =-x 19 0x400000 -quad -x 59 4 -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124 0x1000 DEFF90EXTARGS =-x 124 0x1400 -x 51 0x20 -nohpf -nostatic DEFFARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 -x 51 0x20 -x 124 0x1401 DEFFEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 -x 51 0x20 -x 124 0x1401 DEFFLUSHVAL DEFGNU =--gnu_version=40301 -D__pgnu_vsn=40301 DEFGNU2 =-gnuvsn 40301 DEFGNUC =-def __pgnu_vsn=40301 DEFHOST =host DEFHPF1ARGS =-x 19 0x400000 -quad -x 59 4 -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124 0x1000 DEFHPF2ARGS =-x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 -quad -x 59 4 -tp bulldozer -x 120 0x1000 -x 124 0x1400 -y 15 2 -x 50 2 DEFHPFEXTARGS =-x 51 0x20 -x 124 0x1400 DEFINSTLIB =-lpgnod_prof_inst DEFKEEPOBJ Default keep object file behavior DEFKEEPPREPRO Keep preprocessor file DEFLCUDAFORLIB DEFLCUDALIB DEFLD Name of loader =ld DEFLDARGS Default linker args =-m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld DEFLDDIR =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin DEFLDENDUP =/usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o /usr/lib64/crtn.o DEFLDSTARTUP =/usr/lib64/crt1.o /usr/lib64/crti.o /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o DEFLIBDIR =/usr/lib64 DEFLINKFILES DEFLINKOUT Default output of link step DEFMUNCHLDSTARTUP =/usr/lib64/crt1.o /usr/lib64/crti.o /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o DEFMVDIR =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin DEFNOOPENMP DEFNOSGIMP DEFPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) DEFPREPRO Name of preprocessor program =pgprepro DEFPROFLIB =-lpgnod_prof DEFSMARTARGS Options to Smart assembly rewrite tool =0x62000020 DEFSTDDIRS =/opt/pgi/14.2.0/linux86-64/14.2/libso /opt/pgi/14.2.0/linux86-64/14.2/libso /opt/pgi/14.2.0/linux86-64/14.2/lib /usr/lib64 /usr/lib64/gcc/x86_64-suse-linux/4.3 DEFSTDINC =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 /opt/pgi/14.2.0/linux86-64/14.2/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include DEFSTDINC32 =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 /opt/pgi/14.2.0/linux86-64/14.2/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include DEFSTDINC64 =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 /opt/pgi/14.2.0/linux86-64/14.2/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include DEFSTDLIBS =-lpgmp -Bdynamic -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lpthread -lm -lgcc -lc -lgcc DEFSTDOBJDIR =/usr/lib64 DEFSTDPATHS =-rpath /opt/pgi/14.2.0/linux86-64/14.2/libso DEFTPVAL DEFUNSIGNED Default char is unsigned DEFUSESSELIBS =1 DLLIB =-ldl DOACCLINK =0 DOCCFF DODWARF =1 DOPRELINK DRIVERCOMMAND =pgcc DRIVERDIR =/opt/pgi/14.2.0/linux86-64/14.2/bin DRIVERHOST =titan-login4 DRIVERNAME =pgcc DRYRUN Display but do not execute each command =0 DRYSTDINC Display standard include directories and exit dummy ECHONAME Echo file names as they are compiled =1 EHFRAME ENDNUMADYNAMIC EXE EXTENSION =__extension__= EXTRACT EXTRACTINLINE EXTRACTLIB EXTRACTLIBDEF =Extract.dir EXTRACTLIBSET EXTRACTLIBVAL EXTRACTONLY EXTRACTTOC EXTRACUDAFORLIB F77SUFFIX Suffixes to be compiled by f77 compiler =F f F901 Name of the Fortran 90 phase 1 module =pgf901 F901ARGS Switches passed to F90 compiler =-vect 48 -y 54 1 -x 70 0x40000000 F901DEFARGS More switches passed to F90 compiler =-y 54 1 F902 Name of the Fortran 90 phase 2 module =pgf902 F902ARGS Switches passed to F90 back end F90E =f901 F90EXT Name of the Fortran 90 extractor for inlining =pgf90_ex F90SUFFIX Suffixes to be compiled by f90 compiler =F90 f90 F90X =f90x FARGS Switches to Fortran compiler FBADCUDALIB =0 FBLANKCUDALIB =0 FCGARGS Switches passed to F90 compiler back end FCOMP Name of the Fortran 77 compiler =pgftnc FCOMPCOMMANDS Fortran compile commands =fcomp f90x cufx hpfx f902 FEXT Name of the Fortran 77 extractor for inlining =pgftn_ex FEXTCOMMANDS Fortran extract commands =fext f901ext hpfext FFEARGS Switches to Fortran Front End file files =-Bdynamic --as-needed-lcupti-lcudart--no-as-needed -lcuda --as-needed-lnetcdf_parallel--no-as-needed -lacml_mp --as-needed-lmpich_pgi--no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lrca --as-needed-lsci_pgi_mpi_mp--no-as-needed --as-needed-lsci_pgi_mp--no-as-needed FIPACGARGS FIPAVAL =-x 89 0x80800842 -x 66 0x20000 -y 89 0x40 FIPAVALUE FLUSHVAL FMA3 FMA4 FNEEDCUDA =0 FORCELLVM =0 FORTRANMPI =fmpich FPIC FTNRTL Name of f77 runtime library =-lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl G77DIR =/usr/lib64/gcc/x86_64-suse-linux/4.3/ G77LIBDIR G77LIBLIB GBASE = GCCDIR =/usr/lib64/gcc/x86_64-suse-linux/4.3 GCCINC =/usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include GCCINC32 =/usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include GCCINC64 =/usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include GCCVERSION =40301 GENCCFF =0 GPPDIR =/usr/include/c++/4.3 /usr/include/c++/4.3/x86_64-suse-linux /usr/include/c++/4.3/backward /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include GPPDIR32 =/usr/include/c++/4.3 /usr/include/c++/4.3/x86_64-suse-linux/32 /usr/include/c++/4.3/backward /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include GPPDIR64 =/usr/include/c++/4.3 /usr/include/c++/4.3/x86_64-suse-linux /usr/include/c++/4.3/backward /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include GSYS = GSYSFLAG = HANDLEOTHER =copyother HASMSMPIFLIBNAME =0 HASMSMPIFLIBNAME32 =0 HASMSMPIFLIBNAME64 =0 HCOMPDIR Directory containing the F90/HPF front ends =/opt/pgi/14.2.0/linux86-64/14.2/bin helpvalues HOSTCPP1ARGS =--llalign HOSTOBJSUFFIX Suffix for object files =o HPF1 Name of HPF phase 1 module =pghpf1 HPF1ARGS Switches passed to HPF compiler HPF2 Name of the HPF phase 2 module =pghpf2 HPFE =hpf1 HPFEXT Name of the HPF extractor for inlining =pghpf1_ex HPFSUFFIX Suffixes to be compiled by hpf compiler =HPF hpf HPFX =hpfx HUGELIB HUGEN I8STORAGE Indicates whether to include pgfi8st.o object IEEE IEEE conformance IGNORECUDALIB ILPALIGN IMPSW Linker switch for import libraries =-defaultlib: INFORM What level of informative messages =-inform warn INFOTPVAL =-tp bulldozer INLINE INLINEARGLIB Inlining arguments to compiler/extractor INLINEARGS Inlining arguments to compiler/extractor INLINECARGS Inlining arguments to compiler INLINELIST Inlining arguments to compiler/extractor INLINESIZE input INTRINIL =/opt/pgi/14.2.0/linux86-64/14.2/lib/libintrinsics.il INTRINLEVEL =4 IPA14 =0x104 IPA14r IPA66 =0x20000 IPA89 =0x80800842 IPAADD Collected command line switches that should added on the recompile IPAADDINLINE IPAADDSW Command line switches that should added on the recompile IPAC2ARGS IPA arguments passed to the f90 compiler back end IPACARGS IPA arguments passed to the compiler IPACGARGS IPADIR Directory containing IPA tools =/opt/pgi/14.2.0/linux86-64/14.2/bin IPAEXPORT IPAEXPORTVAL =1 IPAFASTVESTHELP IPAFASTVESTSW IPAFASTVESTX89 =0 IPAIGNORE0 Command line switches that should not be passed on the recompile =-c -Mkeepasm -Mpreprocess IPAIGNORE1 Command line switches that should not be passed on the recompile =-Mextract -Wi -Minline IPAIGNORE2 Command line switches that should not be passed on the recompile =-L -I -l -o IPAINLINE IPAINLINELIST IPALD =pgipa IPALIBCSW =--Mipainlinelibc IPALINK Run IPA linker phase 1 IPALINKENABLE IPARECOMPILE IPARGS Arguments to IPA linker IPAVAL =-x 89 0x80800842 -x 66 0x20000 -x 14 0x104 -y 89 0x40 IPAVALUE IPAVERBOSITY =1 IPNOP Arguments to IPA linker =-nop IPOFILE KEEPASM Keeps the assembler file KEEPCCFF =-keep KEEPIL Keeps the intermediate C++ .il and F90 .ilm files KEEPOBJ Keep object file KEEPPREASM Keep preassembler file KEEPPREPRO Keep preprocessor file KEEPTEMP Keep temporary files LC =-lgcc -lc -lgcc LCRT1 =/usr/lib64/crt1.o LCRTB =/usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o LCRTBDEF =/usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o LCRTE =/usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o LCRTI =/usr/lib64/crti.o LCRTN =/usr/lib64/crtn.o LCUDAFORLIB LCUDALIB LD Name of loader =ld LDARGS Loader arguments LDDIR Directory containing loader =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin LDINPUTPOST LDINPUTPRE LDLIBARGS Loader arguments =-L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib LDLIBS Loader libraries =LIB:/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib LIB:/opt/acml/5.3.1/pgi64_fma4_mp/lib LIB:/opt/cray/dmapp/default/lib64 LIB:/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib LIB:/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib LIB:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 LIB:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 LIB:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 LIB:/opt/cray/nvidia/default/lib64 LIB:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 LIB:/opt/cray/atp/1.7.5/lib lib:cuda lib:acml_mp lib:AtpSigHandler lib:AtpSigHCommData lib:rca LDSO =/lib64/ld-linux-x86-64.so.2 LDSWITCHES Loader switches LEGACY Legacy language definition LEVENTI LFC =-lgfortran LIBDIR Standard linker library directory =/usr/lib64 LIBMEMIL =/opt/pgi/14.2.0/linux86-64/14.2/lib/libmem.il LIBSSW Linker switch for system libraries =-l LIBSUFFIX Suffix for library files =a so LIBSW Linker switch for libraries =-l LIBSW_NOLIB Linker switch for libraries with names that don't begin with lib =-l LINITMP =/opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o LINKNOBJSUFFIX Non-object suffixes to be passed to linker =a lo la LINKOBJSUFFIX Object suffixes to be passed to linker =o LINKSUFFIX Suffixes to be passed to linker =o a lo la LINUXCOMMON =-quad LLVMFLAGS LM =-lm LMP =-lpgmp -Bdynamic -lnuma -lpthread LMP_ONLYMP =-lpgmp LMPILIB LMPIPROFLIB LOCALBINDLIB LOCALBINDPATHS LOCALCOMPLIB Local compiler library directory LOCALCOMPLIBLF LOCALDEFS LOCALRC =YES LPROFLIB LPROFO =/opt/pgi/14.2.0/linux86-64/14.2/libso/init_pgpf.o LRTLIB =-lrt -lpthread LRTLIBNAME =-lrt -lpthread LSCALAPACK LTHREAD =-lpthread LTRACE =/opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o MAJOR Major release version =2014 MALIGN MCUDADEF MCUDAEMUDEF MEDIUM MICLINKARGS MPDEFCPP MPDEFCPPDEF MPFAIR MPFAIRDEF MPI_EXTRAFTNOBJ MPIBASEDIR =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich MPIBASELIB =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/lib MPIINC =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/include MPILIB =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/lib MPILIBDIR =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/lib MPILIBDIRNAME =libso MPILIBINC =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/include MPILIBNAME =mpich MPIMSINC MPIMSLIB MPIMSLIBNAME =msmpi MPISGIDIR =/opt/sgi/mpt/mpt-2.06 MPISGIINC =/opt/sgi/mpt/mpt-2.06/include MPISGILIB =/opt/sgi/mpt/mpt-2.06/lib MPISGIROOT MPITYPE =MPICH MPIUDIR MPSET MPSETCPP MPSETDEF MPSETDEFCPP MSGTPVAL =-tp bulldozer MSLINK MSMPI_INC MSMPI_LIB32 MSMPI_LIB64 MSMPIDIR MSMPIFLIBNAME =msmpifec MSMPIINC MSMPILIB32 MSMPILIB64 MVECT Collected set of -Mvect options NEEDACCLIB =0 NEEDCUDA30 =0 NEEDCUDA42 =0 NEEDCUDA50 =0 NEEDCUDA55 =0 NKEY =1 NOASM Indicates whether to generate asm file NOFRAME Indicates whether -Mnoframe is selected NOILM Indicates whether to generate .ilm file NOLLALIGN NOOPENMP NOPGIRPATH NORPATH NOSGIMP NOSIMD256 NOSTARTUP Indicates whether to exclude standard startup object files NOSTDCPPLIBS Indicates whether to exclude standard C++ language libraries NOSTDFTNLIBS Indicates whether to exclude standard Fortran language libraries NOSTDLIBDIRS Indicates whether to exclude standard library directories NOSTDLIBPATHS Indicates whether to exclude standard library directories from rpath NOSTDLIBS Indicates whether to exclude standard libraries NOUNIFIED =0 NOUNIFIEDMSG NOWARN Suppress warning messages NULLINPUT =/dev/null NUMADYNAMIC =-Bdynamic NUMALIBNAME =-lnuma NUMALIBS =-lnuma NUMAOBJS NUMAOBJSDEF NVILINKARGS OBJDIR default directory in which to keep object files OBJSUFFIX Suffix for object files =o OBJSUFFIXES Suffixes for object files =o OEM_INFO =64-bit target on x86-64 Linux -tp bulldozer OFEDLIBDIR =environment(OFEDLIBDIR) OLDSTDINC =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 /opt/pgi/14.2.0/linux86-64/14.2/include OMPINIT =0 OMPINITOBJ OMPLINKFILE OPTLEVEL Compiler optimization level =1 OPTLEVELDEF Default optimization level without -O =1 OPTLEVELINITDEF Initial default optimization level without -O =1 OPTLEVELINITDEF1 Initial default optimization level without -O =1 OPTLEVELMAX Maximum legal opt level =4 OPTLEVELMIN Minimum legal opt level =0 OUTFILE Output file name PAPIDIR Directory containing libpapi.a =/usr/local/lib PATH =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin PGF77LIB Name of f77 runtime library =-lpgftnrtl PGF90LIB Name of f90 runtime libraries =-lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl PGILD =/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld PGINUMALIBS PGISTATIC PGISTATICX PGIUNSTATIC PGIUNSTATICX PGLEN =64 PGSYS =lin86 PINOBJ POSTOPTIONS Default options to follow command line PREASM Whether to run a preassembler PREASMCMD Preassembler command =smart PREASMSUFFIX Suffix of preassembler file =sm PREFIX =pg PREOPTIONS Default options to preceed command line PREPRO Name of preprocessor program =pgprepro PREPROARGS Arguments to preprocessor program PREPROCONLY Stop after preprocessor PREPRODIR Directory containing preprocessor program =/opt/pgi/14.2.0/linux86-64/14.2/bin PREPROSUFFIX Suffix of preprocessor file =i PROFFLAG PROFILE Use profile startup and libraries PROFILESW Use profile startup and libraries RADEONBIN =tahiti RADEONBINS =tahiti realfiles SCALAPACK_ACML =1 SCALARSSE SETDOCCFF SIMD256 =0 SITEASMPPSUFFIX SITEASMSUFFIX SITECPPSUFFIX SITECSUFFIX SITECUFPPSUFFIX SITECUFSUFFIX SITEDEF SITEF77PPSUFFIX SITEF77SUFFIX SITEF90PPSUFFIX SITEF90SUFFIX SITEHPFPPSUFFIX SITEHPFSUFFIX SITEINC SITELIB SITELIBSUFFIX SITEOBJSUFFIX SITERPATH SITERPATHS SMART Smart assembly rewrite tool =pgsmart SMARTARGS Options to Smart assembly rewrite tool SMARTDIR Smart assembly rewrite tool directory =/opt/pgi/14.2.0/linux86-64/14.2/bin SRCFILES List of source files SRCSUFFIX Source file suffixes =c i cpp asm f f90 F F90 cuf CUF hpf HPF SSE =1 SSE2 =1 SSE3 =1 SSE41 SSE42 SSE4A =1 SSEDEFS =__SSE__ __MMX__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ SSSE3 =1 status =0 STDDEF =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __THROW= __extension__= __amd_64__amd64__ __k8 __k8__ __SSE__ __MMX__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ STDINC =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 /opt/pgi/14.2.0/linux86-64/14.2/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include /usr/include STDOBJDIR Directory containing standard startup object files =/usr/lib64 STDPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) STDRPATH STDRPATHLF STDRPATHMP STDRPATHSO =-rpath /opt/pgi/14.2.0/linux86-64/14.2/libso STRICTBMODE =-x 123 4 switches =-tp=bulldozer -Bdynamic -D__CRAYXE -D__CRAY_INTERLAGOS -D__CRAYXT_COMPUTE_LINUX_TARGET -pgf90libs -show -I/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include -I/opt/cray/hdf5-parallel/1.8.13/PGI/141/include -I/opt/acml/5.3.1/pgi64_fma4_mp/include -I/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include -I/opt/cray/libsci/13.0.1/PGI/141/interlagos/include -I/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include -I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include -I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include -I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include -I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include -I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include -I/opt/cray-hss-devel/7.2.0/include -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -Wl,--as-needed,-lcupti,-lcudart,--no-as-needed -lcuda -Wl,--as-needed,-lnetcdf_parallel,--no-as-needed -lacml_mp -Wl,--as-needed,-lmpich_pgi,--no-as-needed -lAtpSigHandler -lAtpSigHCommData -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -lrca -Wl,--as-needed,-lsci_pgi_mpi_mp,--no-as-needed -Wl,--as-needed,-lsci_pgi_mp,--no-as-needed SYS32 =linux86 SYS64 =linux86-64 SYSACCELS =tesla radeon SYSACCLIBS =nd aod od SYSV_PROF Is System V profiling used TARGET Target system =linux86-64 TARGETARCH =64 TARGETCOMMON =-x 70 0x8000 -x 122 1 -x 125 0x20000 -x 117 0x1000 THROW =__THROW= TIMEOBJ TIMER TOOLKITFLAG =-x 189 0x20 TPVAL =-tp bulldozer TRACEBACK =OFF [ON OFF] USECUDAROOT =/opt/pgi/14.2.0/linux86-64/2014/cuda/5.0 USERASMPPSUFFIX USERASMSUFFIX USERCPPSUFFIX USERCSUFFIX USERCUFPPSUFFIX USERCUFSUFFIX USERF77PPSUFFIX USERF77SUFFIX USERF90PPSUFFIX USERF90SUFFIX USERHPFPPSUFFIX USERHPFSUFFIX USERLIBSUFFIX USEROBJSUFFIX USESSELIBS =1 USETPVAL =-tp bulldozer USRDDEF =-D__CRAYXE -D__CRAY_INTERLAGOS -D__CRAYXT_COMPUTE_LINUX_TARGET USRDEFDEF =-def __CRAYXE -def __CRAY_INTERLAGOS -def __CRAYXT_COMPUTE_LINUX_TARGET USRFTNRTL Additional fortran runtime libraries =-lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl USRINC =/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include /opt/cray/hdf5-parallel/1.8.13/PGI/141/include /opt/acml/5.3.1/pgi64_fma4_mp/include /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include /opt/cray/libsci/13.0.1/PGI/141/interlagos/include /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include /opt/cray-hss-devel/7.2.0/include USRRPATH USRSTDINC VECT Vector optimization level =48 VECTSSE VERBOSE Display each command as it is executed VERSION Display version of driver and tools WRSTR =-x 119 0x20 X86_64 =1 X86_64TARGET =1 ZCDEF =-x 117 0x600 ZCFLAG =--zc_eh ZCLIBS =-lzceh -lgcc_eh --eh-frame-hdr Known Phases: Extract subprograms to an extract library for later inlining: C Extractor Fortran 77 Extractor Fortran 90 Compiler phase 1 High Performance Fortran Extractor Preprocess files: Preprocess any file Compile or Assemble source files: C Compiler Fortran 77 Compiler f90x cufx hpfx Fortran 90 Compiler phase 2 Assembler Preprocess assembler files IPA Linker: IPA Propagation Link object files to executable: Linker Checking for functions [MPI_Alltoallw] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Checking for functions [MPI_Win_create] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.libraries/conftest' Popping language C Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o: In function `_check_MPIDI_CH3I_sock_set': /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c:5: undefined reference to `MPIDI_CH3I_sock_set' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.libraries/conftest' Popping language C Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o: In function `_check_MPIDI_CH3I_sock_fixed_nbc_progress': /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c:5: undefined reference to `MPIDI_CH3I_sock_fixed_nbc_progress' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/config.libraries/conftest' Popping language C Pushing language C Popping language C Pushing language C Popping language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/scratch/petsc-kMEe3S/config.libraries/lib1.a", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/scratch/petsc-kMEe3S/config.libraries/lib2.a", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.libraries/conftest to see if it can be run Executing: /bin/false /tmp/scratch/petsc-kMEe3S/config.libraries/conftest Executing: /bin/false /tmp/scratch/petsc-kMEe3S/config.libraries/conftest ERROR while running executable: Could not execute "/bin/false /tmp/scratch/petsc-kMEe3S/config.libraries/conftest": Library was not shared Popping language C ================================================================================ TEST configureLibrary from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:473) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:473) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for headers Compiler specific search MPI: [] ================================================================================ TEST checkInclude from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths ================================================================================ TEST configureConversion from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:212) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:212) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.packages.MPI Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:180) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:180) Check for functions added to the interface in MPI-2 Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl ================================================================================ TEST configureTypes from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:232) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:232) Checking for MPI types ================================================================================ TEST configureMPITypes from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:244) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:244) Checking for MPI Datatype handles Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest ERROR while running executable: Could not execute "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest": [Thu Jun 4 22:30:40 2015] [c24-0c0s6n2] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(506): MPID_Init(192).......: channel initialization failed MPID_Init(569).......: PMI2 init failed: 1 Popping language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest ERROR while running executable: Could not execute "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest": [Thu Jun 4 22:30:43 2015] [c24-0c0s6n2] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(506): MPID_Init(192).......: channel initialization failed MPID_Init(569).......: PMI2 init failed: 1 Popping language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Testing executable /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest to see if it can be run Executing: /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest Executing: /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest ERROR while running executable: Could not execute "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest": [Thu Jun 4 22:30:45 2015] [c24-0c0s6n2] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(506): MPID_Init(192).......: channel initialization failed MPID_Init(569).......: PMI2 init failed: 1 Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:318) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:318) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:337) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:337) Returns true if SGI MPI is used SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:347) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:347) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() ================================================================================ TEST FortranMPICheck from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:365) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:365) Make sure fortran include [mpif.h] and library symbols are found Checking for header mpif.h Checking for fortran mpi_init() Checking for mpi.mod Defined "HAVE_MPI_F90MODULE" to "1" ================================================================================ TEST configureIO from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:390) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:390) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:449) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:449) Find MPI include paths from "mpicc -show" compilers: Checking arg Known compilers: Checking arg Variables: compilers: Checking arg ACC50FLAGS compilers: Checking arg ACC901FLAGS compilers: Checking arg ACCAUTOPAR compilers: Checking arg =1 compilers: Checking arg ACCCACHE compilers: Checking arg =-x compilers: Checking arg 163 compilers: Checking arg 0x100 compilers: Checking arg ACCCGDEF compilers: Checking arg ACCCGFLAGS compilers: Checking arg ACCDEBUG compilers: Checking arg ACCDEF compilers: Checking arg ACCDEFDEF compilers: Checking arg ACCELFLAG compilers: Checking arg ACCELS compilers: Checking arg ACCEXTRACTLIB compilers: Checking arg ACCEXTRACTLIBSET compilers: Checking arg ACCEXTRACTLIBSW compilers: Checking arg ACCEXTRACTTOC compilers: Checking arg ACCFEFLAGS compilers: Checking arg ACCFLAGS compilers: Checking arg ACCLIB compilers: Checking arg =-laccapid compilers: Checking arg ACCLIB2 compilers: Checking arg ACCLINK compilers: Checking arg ACCLLVM compilers: Checking arg ACCPREFIX compilers: Checking arg ACCRELOC compilers: Checking arg ACCREQUIRED compilers: Checking arg ACTTPVAL compilers: Checking arg =-tp compilers: Checking arg bulldozer compilers: Checking arg ADDEHFRAME compilers: Checking arg ALIASMODE compilers: Checking arg =-x compilers: Checking arg 2 compilers: Checking arg 0x400 compilers: Checking arg ALLOCATABLE03 compilers: Checking arg Use compilers: Checking arg Fortran compilers: Checking arg 2003 compilers: Checking arg allocatable compilers: Checking arg semantics compilers: Checking arg ANYCUF compilers: Checking arg =0 compilers: Checking arg AOPTFLAG compilers: Checking arg =-x compilers: Checking arg 176 compilers: Checking arg 0x140000 compilers: Checking arg -x compilers: Checking arg 177 compilers: Checking arg 0x0202007f compilers: Checking arg APPENDMOD compilers: Checking arg =1 compilers: Checking arg APPENDTOOL compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg object compilers: Checking arg file compilers: Checking arg append compilers: Checking arg module compilers: Checking arg =pgappend compilers: Checking arg AS compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg assembler compilers: Checking arg program compilers: Checking arg =as compilers: Checking arg ASARGS compilers: Checking arg Arguments compilers: Checking arg to compilers: Checking arg assembler compilers: Checking arg ASDIR compilers: Checking arg Directory compilers: Checking arg containing compilers: Checking arg assembler compilers: Checking arg program compilers: Checking arg =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin compilers: Checking arg ASMCOMMAND compilers: Checking arg Internal compilers: Checking arg command compilers: Checking arg to compilers: Checking arg process compilers: Checking arg assembler compilers: Checking arg file compilers: Checking arg =asm compilers: Checking arg ASMKEY compilers: Checking arg =1 compilers: Checking arg ASMONLY compilers: Checking arg Compile compilers: Checking arg and compilers: Checking arg assemble, compilers: Checking arg do compilers: Checking arg not compilers: Checking arg link compilers: Checking arg ASMSUFFIX compilers: Checking arg Suffix compilers: Checking arg of compilers: Checking arg assembler compilers: Checking arg file compilers: Checking arg =s compilers: Checking arg ASMSUFFIXES compilers: Checking arg Suffix compilers: Checking arg allowed compilers: Checking arg for compilers: Checking arg assembler compilers: Checking arg file compilers: Checking arg =s compilers: Checking arg ASSUMETAANALYSIS compilers: Checking arg ASTYPE compilers: Checking arg What compilers: Checking arg type compilers: Checking arg of compilers: Checking arg object compilers: Checking arg file compilers: Checking arg to compilers: Checking arg produce compilers: Checking arg =ELF compilers: Checking arg [COFF compilers: Checking arg ELF compilers: Checking arg AOUT] compilers: Checking arg ATHLON compilers: Checking arg =1 compilers: Checking arg AUTOINLINE compilers: Checking arg AUTOLEVELS compilers: Checking arg =10 compilers: Checking arg AUTOMAXFUNCSIZE compilers: Checking arg =100 compilers: Checking arg AUTOMAXTOTALSIZE compilers: Checking arg =8000 compilers: Checking arg AVX compilers: Checking arg =1 compilers: Checking arg AVX2 compilers: Checking arg BADCUDALIB compilers: Checking arg =0 compilers: Checking arg BLANKCUDALIB compilers: Checking arg =0 compilers: Checking arg BLTINLIBS compilers: Checking arg BMODE compilers: Checking arg =-x compilers: Checking arg 123 compilers: Checking arg 4 compilers: Checking arg C99 compilers: Checking arg =-x compilers: Checking arg 123 compilers: Checking arg 0x80000000 compilers: Checking arg CARGS compilers: Checking arg Switches compilers: Checking arg to compilers: Checking arg C compilers: Checking arg compiler compilers: Checking arg =-x compilers: Checking arg 123 compilers: Checking arg 0x80000000 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 2 compilers: Checking arg 0x400 compilers: Checking arg -x compilers: Checking arg 119 compilers: Checking arg 0x20 compilers: Checking arg -def compilers: Checking arg __pgnu_vsn=40301 compilers: Checking arg -alwaysinline compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/lib/libintrinsics.il compilers: Checking arg 4 compilers: Checking arg CCOMP compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg C compilers: Checking arg compiler compilers: Checking arg =pgc compilers: Checking arg CCOMPDIR compilers: Checking arg Directory compilers: Checking arg containing compilers: Checking arg the compilers: Checking arg C compilers: Checking arg compiler compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin compilers: Checking arg CEXT compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg C compilers: Checking arg extractor compilers: Checking arg for compilers: Checking arg inlining compilers: Checking arg =pgc_ex compilers: Checking arg CEXTARGS compilers: Checking arg Arguments compilers: Checking arg for compilers: Checking arg extracting compilers: Checking arg =-x compilers: Checking arg 14 compilers: Checking arg 0x80 compilers: Checking arg CGARGS compilers: Checking arg Code compilers: Checking arg Generation compilers: Checking arg switches compilers: Checking arg to compilers: Checking arg native compilers: Checking arg compiler compilers: Checking arg =-x compilers: Checking arg 120 compilers: Checking arg 0x200000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x40000000 compilers: Checking arg -y compilers: Checking arg 189 compilers: Checking arg 0x4000000 compilers: Checking arg CHECKCUDALIB compilers: Checking arg CLTPVAL compilers: Checking arg =-tp compilers: Checking arg bulldozer compilers: Checking arg COMPBASE compilers: Checking arg = compilers: Checking arg COMPBASE32 compilers: Checking arg =/opt/pgi/14.2.0 compilers: Checking arg COMPBASE64 compilers: Checking arg =/opt/pgi/14.2.0 compilers: Checking arg COMPBBIN compilers: Checking arg =bin compilers: Checking arg COMPBIN compilers: Checking arg Compiler compilers: Checking arg binary compilers: Checking arg directory compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin compilers: Checking arg COMPGCCINCDIR compilers: Checking arg =include-gcc44 compilers: Checking arg COMPGLIBDIR compilers: Checking arg COMPGLIBLFDIR compilers: Checking arg COMPILEONLY compilers: Checking arg Compile, compilers: Checking arg do compilers: Checking arg not compilers: Checking arg assemble compilers: Checking arg COMPINCDIR compilers: Checking arg Compiler compilers: Checking arg include compilers: Checking arg subdirectory compilers: Checking arg =include-gcc44 compilers: Checking arg include compilers: Checking arg COMPLIB compilers: Checking arg Compiler compilers: Checking arg library compilers: Checking arg directory compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg COMPLIBDIR compilers: Checking arg Compiler compilers: Checking arg library compilers: Checking arg subdirectory compilers: Checking arg =lib compilers: Checking arg COMPLIBLF compilers: Checking arg COMPLIBLFDIR compilers: Checking arg Compiler compilers: Checking arg library compilers: Checking arg subdirectory compilers: Checking arg for compilers: Checking arg large compilers: Checking arg file compilers: Checking arg support compilers: Checking arg COMPLIBMP compilers: Checking arg COMPLIBOBJ compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg COMPLIBSO compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg COMPLIBSTATIC compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Checking arg COMPLIBSUBDIR compilers: Checking arg =libso compilers: Checking arg COMPSUBBIN compilers: Checking arg Subdirectory compilers: Checking arg from compilers: Checking arg which compilers: Checking arg to compilers: Checking arg get compilers: Checking arg compilers compilers: Checking arg COMPSYS compilers: Checking arg = compilers: Checking arg COMPUTECAP compilers: Checking arg =2x compilers: Checking arg 3x compilers: Checking arg COMPUTECAPS compilers: Checking arg =2x compilers: Checking arg 3x compilers: Checking arg COMPVER compilers: Checking arg =14.2 compilers: Checking arg CONCUR compilers: Checking arg Add compilers: Checking arg multiprocessor compilers: Checking arg thread compilers: Checking arg libraries compilers: Checking arg =YES compilers: Checking arg CONCURCOMPILE compilers: Checking arg Compiling compilers: Checking arg with compilers: Checking arg -Mconcur compilers: Checking arg or compilers: Checking arg -mp compilers: Checking arg CONCURSW compilers: Checking arg Add compilers: Checking arg multiprocessor compilers: Checking arg thread compilers: Checking arg libraries compilers: Checking arg =YES compilers: Checking arg CPP compilers: Checking arg =pgCC compilers: Checking arg CPP1ARGS compilers: Checking arg =--gnu_version=40301 compilers: Checking arg -D__pgnu_vsn=40301 compilers: Checking arg CPP2ARGS compilers: Checking arg =-gnuvsn compilers: Checking arg 40301 compilers: Checking arg -x compilers: Checking arg 69 compilers: Checking arg 0x200 compilers: Checking arg CPPASC compilers: Checking arg CPPASCPP compilers: Checking arg =C compilers: Checking arg cpp compilers: Checking arg cc compilers: Checking arg cxx compilers: Checking arg c++ compilers: Checking arg CPPCOMPCOMMANDS compilers: Checking arg C++ compilers: Checking arg compile compilers: Checking arg commands compilers: Checking arg =nocpp compilers: Checking arg CPPEXTCOMMANDS compilers: Checking arg C++ compilers: Checking arg extract compilers: Checking arg commands compilers: Checking arg =nocpp compilers: Checking arg CPPLDARGS compilers: Checking arg CPPLIB compilers: Checking arg CPPSTDLIBS compilers: Checking arg CPPSUFFIX compilers: Checking arg Suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg compiled compilers: Checking arg by compilers: Checking arg C++ compilers: Checking arg compiler compilers: Checking arg =cpp compilers: Checking arg CRTL compilers: Checking arg =-lnspgc compilers: Checking arg -lpgc compilers: Checking arg CSUFFIX compilers: Checking arg Suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg compiled compilers: Checking arg by compilers: Checking arg C compilers: Checking arg compiler compilers: Checking arg =c compilers: Checking arg i compilers: Checking arg CUCOMMANDS compilers: Checking arg Commands compilers: Checking arg to compilers: Checking arg run compilers: Checking arg for compilers: Checking arg CUDA compilers: Checking arg files compilers: Checking arg CUDAEMU compilers: Checking arg CUDAFORBLASSUF compilers: Checking arg CUDA compilers: Checking arg Fortran compilers: Checking arg CUBLAS compilers: Checking arg library compilers: Checking arg suffix compilers: Checking arg set compilers: Checking arg when compilers: Checking arg using compilers: Checking arg CUDA compilers: Checking arg 4.0 compilers: Checking arg CUDAFORSUF compilers: Checking arg CUDA compilers: Checking arg Fortran compilers: Checking arg library compilers: Checking arg suffix compilers: Checking arg set compilers: Checking arg when compilers: Checking arg using compilers: Checking arg CUDA compilers: Checking arg 4.0 compilers: Checking arg =4 compilers: Checking arg CUDALIBDIR compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/2014/cuda/5.0/lib64 compilers: Checking arg CUDALIBDIRNAME compilers: Checking arg =lib64 compilers: Checking arg CUDANEEDED compilers: Checking arg =0 compilers: Checking arg CUDAROOT compilers: Checking arg CUDARPATH compilers: Checking arg CUDARPATHNEEDED compilers: Checking arg =0 compilers: Checking arg CUDARTLIBS compilers: Checking arg =cudart compilers: Checking arg CUDASITELIB compilers: Checking arg CUDAVERSION compilers: Checking arg =5.0 compilers: Checking arg CUFSUFFIX compilers: Checking arg CUDA compilers: Checking arg Fortran compilers: Checking arg suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg compiled compilers: Checking arg by compilers: Checking arg f90 compilers: Checking arg compiler compilers: Checking arg =CUF compilers: Checking arg cuf compilers: Checking arg CUFX compilers: Checking arg =cufx compilers: Checking arg CZCCFF compilers: Checking arg =-cz compilers: Checking arg DDEFACCEL compilers: Checking arg DDEFNOOPENMP compilers: Checking arg DDEFNOSGIMP compilers: Checking arg DEBUG compilers: Checking arg Debug compilers: Checking arg setting compilers: Checking arg DEBUG2 compilers: Checking arg Debug compilers: Checking arg dwarf compilers: Checking arg level compilers: Checking arg DEBUG2DEF compilers: Checking arg Debug compilers: Checking arg debug compilers: Checking arg dwarf compilers: Checking arg level compilers: Checking arg DEBUGERROR compilers: Checking arg DEBUGFLAG compilers: Checking arg DEBUGSET compilers: Checking arg DEF901ACC compilers: Checking arg DEFACC compilers: Checking arg =-x compilers: Checking arg 176 compilers: Checking arg 0x100 compilers: Checking arg -x compilers: Checking arg 186 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 176 compilers: Checking arg 0x100 compilers: Checking arg -x compilers: Checking arg 176 compilers: Checking arg 0x100 compilers: Checking arg -x compilers: Checking arg 189 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 189 compilers: Checking arg 0x800 compilers: Checking arg DEFACCEL compilers: Checking arg =tesla compilers: Checking arg host compilers: Checking arg DEFACCRELOC compilers: Checking arg DEFAS compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg assembler compilers: Checking arg program compilers: Checking arg =as compilers: Checking arg DEFASARGS compilers: Checking arg DEFASDIR compilers: Checking arg =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin compilers: Checking arg DEFASTYPE compilers: Checking arg =ELF compilers: Checking arg DEFAULTCAPFLAG compilers: Checking arg =-x compilers: Checking arg 176 compilers: Checking arg 0x100 compilers: Checking arg -x compilers: Checking arg 186 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 176 compilers: Checking arg 0x100 compilers: Checking arg -x compilers: Checking arg 176 compilers: Checking arg 0x100 compilers: Checking arg -x compilers: Checking arg 189 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 189 compilers: Checking arg 0x800 compilers: Checking arg DEFAULTCPPASCPP compilers: Checking arg =C compilers: Checking arg cpp compilers: Checking arg cc compilers: Checking arg cxx compilers: Checking arg c++ compilers: Checking arg DEFBMODE compilers: Checking arg =-x compilers: Checking arg 123 compilers: Checking arg 4 compilers: Checking arg DEFC99 compilers: Checking arg =1 compilers: Checking arg DEFCACHESIZE compilers: Checking arg DEFCARGS compilers: Checking arg =-x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg DEFCCOMPDIR compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin compilers: Checking arg DEFCEXTARGS compilers: Checking arg =-x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg DEFCOMMON compilers: Checking arg =-x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg DEFCPPARGS compilers: Checking arg =-x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg DEFCPPDEFS compilers: Checking arg =__PGI compilers: Checking arg DEFCPPINC compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/include/CC compilers: Checking arg DEFCPPLDARGS compilers: Checking arg DEFCPPLIB compilers: Checking arg =Cz compilers: Checking arg DEFCPPLIBS compilers: Checking arg DEFCPPSTDLIBS compilers: Checking arg DEFCUDARPATH compilers: Checking arg DEFCUDAVERSION compilers: Checking arg =5.0 compilers: Checking arg DEFDEFACCRELOC compilers: Checking arg DEFDEFDEFACCRELOC compilers: Checking arg DEFDEFS compilers: Checking arg =unix compilers: Checking arg __unix compilers: Checking arg __unix__ compilers: Checking arg linux compilers: Checking arg __linux compilers: Checking arg __linux__ compilers: Checking arg __NO_MATH_INLINES compilers: Checking arg __x86_64 compilers: Checking arg __x86_64__ compilers: Checking arg __LONG_MAX__=9223372036854775807L compilers: Checking arg __SIZE_TYPE__=unsigned compilers: Checking arg long compilers: Checking arg int compilers: Checking arg __PTRDIFF_TYPE__=long compilers: Checking arg int compilers: Checking arg __THROW= compilers: Checking arg __extension__= compilers: Checking arg __amd_64__amd64__ compilers: Checking arg __k8 compilers: Checking arg __k8__ compilers: Checking arg __SSE__ compilers: Checking arg __MMX__ compilers: Checking arg __SSE2__ compilers: Checking arg __SSE3__ compilers: Checking arg __SSSE3__ compilers: Checking arg __SSE4A__ compilers: Checking arg __ABM__ compilers: Checking arg DEFF901ARGS compilers: Checking arg =-nohpf compilers: Checking arg -nostatic compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 15 compilers: Checking arg 2 compilers: Checking arg -x compilers: Checking arg 49 compilers: Checking arg 0x400004 compilers: Checking arg -x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 57 compilers: Checking arg 0x4c compilers: Checking arg -x compilers: Checking arg 58 compilers: Checking arg 0x10000 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1000 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 57 compilers: Checking arg 0xfb0000 compilers: Checking arg -x compilers: Checking arg 58 compilers: Checking arg 0x78031040 compilers: Checking arg DEFF902ARGS compilers: Checking arg =-x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1400 compilers: Checking arg -y compilers: Checking arg 15 compilers: Checking arg 2 compilers: Checking arg -x compilers: Checking arg 57 compilers: Checking arg 0x3b0000 compilers: Checking arg -x compilers: Checking arg 58 compilers: Checking arg 0x48000000 compilers: Checking arg DEFF902COMMON compilers: Checking arg =-x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1400 compilers: Checking arg -y compilers: Checking arg 15 compilers: Checking arg 2 compilers: Checking arg DEFF90COMMON compilers: Checking arg =-x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 15 compilers: Checking arg 2 compilers: Checking arg -x compilers: Checking arg 49 compilers: Checking arg 0x400004 compilers: Checking arg -x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 57 compilers: Checking arg 0x4c compilers: Checking arg -x compilers: Checking arg 58 compilers: Checking arg 0x10000 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1000 compilers: Checking arg DEFF90EXTARGS compilers: Checking arg =-x compilers: Checking arg 124 compilers: Checking arg 0x1400 compilers: Checking arg -x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -nohpf compilers: Checking arg -nostatic compilers: Checking arg DEFFARGS compilers: Checking arg =-x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1401 compilers: Checking arg DEFFEXTARGS compilers: Checking arg =-x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1401 compilers: Checking arg DEFFLUSHVAL compilers: Checking arg DEFGNU compilers: Checking arg =--gnu_version=40301 compilers: Checking arg -D__pgnu_vsn=40301 compilers: Checking arg DEFGNU2 compilers: Checking arg =-gnuvsn compilers: Checking arg 40301 compilers: Checking arg DEFGNUC compilers: Checking arg =-def compilers: Checking arg __pgnu_vsn=40301 compilers: Checking arg DEFHOST compilers: Checking arg =host compilers: Checking arg DEFHPF1ARGS compilers: Checking arg =-x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 15 compilers: Checking arg 2 compilers: Checking arg -x compilers: Checking arg 49 compilers: Checking arg 0x400004 compilers: Checking arg -x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 57 compilers: Checking arg 0x4c compilers: Checking arg -x compilers: Checking arg 58 compilers: Checking arg 0x10000 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1000 compilers: Checking arg DEFHPF2ARGS compilers: Checking arg =-x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 119 compilers: Checking arg 0xa10000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 0x40 compilers: Checking arg -x compilers: Checking arg 123 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 4 compilers: Checking arg -x compilers: Checking arg 127 compilers: Checking arg 17 compilers: Checking arg -x compilers: Checking arg 19 compilers: Checking arg 0x400000 compilers: Checking arg -x compilers: Checking arg 28 compilers: Checking arg 0x40000 compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x10000000 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg -quad compilers: Checking arg -x compilers: Checking arg 59 compilers: Checking arg 4 compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg -x compilers: Checking arg 120 compilers: Checking arg 0x1000 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1400 compilers: Checking arg -y compilers: Checking arg 15 compilers: Checking arg 2 compilers: Checking arg -x compilers: Checking arg 50 compilers: Checking arg 2 compilers: Checking arg DEFHPFEXTARGS compilers: Checking arg =-x compilers: Checking arg 51 compilers: Checking arg 0x20 compilers: Checking arg -x compilers: Checking arg 124 compilers: Checking arg 0x1400 compilers: Checking arg DEFINSTLIB compilers: Checking arg =-lpgnod_prof_inst compilers: Checking arg DEFKEEPOBJ compilers: Checking arg Default compilers: Checking arg keep compilers: Checking arg object compilers: Checking arg file compilers: Checking arg behavior compilers: Checking arg DEFKEEPPREPRO compilers: Checking arg Keep compilers: Checking arg preprocessor compilers: Checking arg file compilers: Checking arg DEFLCUDAFORLIB compilers: Checking arg DEFLCUDALIB compilers: Checking arg DEFLD compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg loader compilers: Checking arg =ld compilers: Checking arg DEFLDARGS compilers: Checking arg Default compilers: Checking arg linker compilers: Checking arg args compilers: Checking arg =-m compilers: Checking arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld compilers: Checking arg DEFLDDIR compilers: Checking arg =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin compilers: Checking arg DEFLDENDUP compilers: Checking arg =/usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o compilers: Checking arg /usr/lib64/crtn.o compilers: Checking arg DEFLDSTARTUP compilers: Checking arg =/usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Checking arg DEFLIBDIR compilers: Checking arg =/usr/lib64 compilers: Checking arg DEFLINKFILES compilers: Checking arg DEFLINKOUT compilers: Checking arg Default compilers: Checking arg output compilers: Checking arg of compilers: Checking arg link compilers: Checking arg step compilers: Checking arg DEFMUNCHLDSTARTUP compilers: Checking arg =/usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Checking arg DEFMVDIR compilers: Checking arg =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin compilers: Checking arg DEFNOOPENMP compilers: Checking arg DEFNOSGIMP compilers: Checking arg DEFPRED compilers: Checking arg =-predicate compilers: Checking arg #machine(x86_64) compilers: Checking arg #lint(off) compilers: Checking arg #system(posix) compilers: Checking arg #cpu(x86_64) compilers: Checking arg DEFPREPRO compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg preprocessor compilers: Checking arg program compilers: Checking arg =pgprepro compilers: Checking arg DEFPROFLIB compilers: Checking arg =-lpgnod_prof compilers: Checking arg DEFSMARTARGS compilers: Checking arg Options compilers: Checking arg to compilers: Checking arg Smart compilers: Checking arg assembly compilers: Checking arg rewrite compilers: Checking arg tool compilers: Checking arg =0x62000020 compilers: Checking arg DEFSTDDIRS compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/lib compilers: Checking arg /usr/lib64 compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Checking arg DEFSTDINC compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/include compilers: Checking arg /usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg DEFSTDINC32 compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/include compilers: Checking arg /usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg DEFSTDINC64 compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/include compilers: Checking arg /usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg DEFSTDLIBS compilers: Checking arg =-lpgmp compilers: Checking arg -Bdynamic compilers: Checking arg -lnuma compilers: Checking arg -lpthread compilers: Checking arg -lpgf90 compilers: Checking arg -lpgf90_rpm1 compilers: Checking arg -lpgf902 compilers: Checking arg -lpgf90rtl compilers: Checking arg -lpgftnrtl compilers: Checking arg -lnspgc compilers: Checking arg -lpgc compilers: Checking arg -lrt compilers: Checking arg -lpthread compilers: Checking arg -lm compilers: Checking arg -lgcc compilers: Checking arg -lc compilers: Checking arg -lgcc compilers: Checking arg DEFSTDOBJDIR compilers: Checking arg =/usr/lib64 compilers: Checking arg DEFSTDPATHS compilers: Checking arg =-rpath compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg DEFTPVAL compilers: Checking arg DEFUNSIGNED compilers: Checking arg Default compilers: Checking arg char compilers: Checking arg is compilers: Checking arg unsigned compilers: Checking arg DEFUSESSELIBS compilers: Checking arg =1 compilers: Checking arg DLLIB compilers: Checking arg =-ldl compilers: Checking arg DOACCLINK compilers: Checking arg =0 compilers: Checking arg DOCCFF compilers: Checking arg DODWARF compilers: Checking arg =1 compilers: Checking arg DOPRELINK compilers: Checking arg DRIVERCOMMAND compilers: Checking arg =pgcc compilers: Checking arg DRIVERDIR compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin compilers: Checking arg DRIVERHOST compilers: Checking arg =titan-login4 compilers: Checking arg DRIVERNAME compilers: Checking arg =pgcc compilers: Checking arg DRYRUN compilers: Checking arg Display compilers: Checking arg but compilers: Checking arg do compilers: Checking arg not compilers: Checking arg execute compilers: Checking arg each compilers: Checking arg command compilers: Checking arg =0 compilers: Checking arg DRYSTDINC compilers: Checking arg Display compilers: Checking arg standard compilers: Checking arg include compilers: Checking arg directories compilers: Checking arg and compilers: Checking arg exit compilers: Checking arg dummy compilers: Checking arg ECHONAME compilers: Checking arg Echo compilers: Checking arg file compilers: Checking arg names compilers: Checking arg as compilers: Checking arg they compilers: Checking arg are compilers: Checking arg compiled compilers: Checking arg =1 compilers: Checking arg EHFRAME compilers: Checking arg ENDNUMADYNAMIC compilers: Checking arg EXE compilers: Checking arg EXTENSION compilers: Checking arg =__extension__= compilers: Checking arg EXTRACT compilers: Checking arg EXTRACTINLINE compilers: Checking arg EXTRACTLIB compilers: Checking arg EXTRACTLIBDEF compilers: Checking arg =Extract.dir compilers: Checking arg EXTRACTLIBSET compilers: Checking arg EXTRACTLIBVAL compilers: Checking arg EXTRACTONLY compilers: Checking arg EXTRACTTOC compilers: Checking arg EXTRACUDAFORLIB compilers: Checking arg F77SUFFIX compilers: Checking arg Suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg compiled compilers: Checking arg by compilers: Checking arg f77 compilers: Checking arg compiler compilers: Checking arg =F compilers: Checking arg f compilers: Checking arg F901 compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg Fortran compilers: Checking arg 90 compilers: Checking arg phase compilers: Checking arg 1 compilers: Checking arg module compilers: Checking arg =pgf901 compilers: Checking arg F901ARGS compilers: Checking arg Switches compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg F90 compilers: Checking arg compiler compilers: Checking arg =-vect compilers: Checking arg 48 compilers: Checking arg -y compilers: Checking arg 54 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 70 compilers: Checking arg 0x40000000 compilers: Checking arg F901DEFARGS compilers: Checking arg More compilers: Checking arg switches compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg F90 compilers: Checking arg compiler compilers: Checking arg =-y compilers: Checking arg 54 compilers: Checking arg 1 compilers: Checking arg F902 compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg Fortran compilers: Checking arg 90 compilers: Checking arg phase compilers: Checking arg 2 compilers: Checking arg module compilers: Checking arg =pgf902 compilers: Checking arg F902ARGS compilers: Checking arg Switches compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg F90 compilers: Checking arg back compilers: Checking arg end compilers: Checking arg F90E compilers: Checking arg =f901 compilers: Checking arg F90EXT compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg Fortran compilers: Checking arg 90 compilers: Checking arg extractor compilers: Checking arg for compilers: Checking arg inlining compilers: Checking arg =pgf90_ex compilers: Checking arg F90SUFFIX compilers: Checking arg Suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg compiled compilers: Checking arg by compilers: Checking arg f90 compilers: Checking arg compiler compilers: Checking arg =F90 compilers: Checking arg f90 compilers: Checking arg F90X compilers: Checking arg =f90x compilers: Checking arg FARGS compilers: Checking arg Switches compilers: Checking arg to compilers: Checking arg Fortran compilers: Checking arg compiler compilers: Checking arg FBADCUDALIB compilers: Checking arg =0 compilers: Checking arg FBLANKCUDALIB compilers: Checking arg =0 compilers: Checking arg FCGARGS compilers: Checking arg Switches compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg F90 compilers: Checking arg compiler compilers: Checking arg back compilers: Checking arg end compilers: Checking arg FCOMP compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg Fortran compilers: Checking arg 77 compilers: Checking arg compiler compilers: Checking arg =pgftnc compilers: Checking arg FCOMPCOMMANDS compilers: Checking arg Fortran compilers: Checking arg compile compilers: Checking arg commands compilers: Checking arg =fcomp compilers: Checking arg f90x compilers: Checking arg cufx compilers: Checking arg hpfx compilers: Checking arg f902 compilers: Checking arg FEXT compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg Fortran compilers: Checking arg 77 compilers: Checking arg extractor compilers: Checking arg for compilers: Checking arg inlining compilers: Checking arg =pgftn_ex compilers: Checking arg FEXTCOMMANDS compilers: Checking arg Fortran compilers: Checking arg extract compilers: Checking arg commands compilers: Checking arg =fext compilers: Checking arg f901ext compilers: Checking arg hpfext compilers: Checking arg FFEARGS compilers: Checking arg Switches compilers: Checking arg to compilers: Checking arg Fortran compilers: Checking arg Front compilers: Checking arg End compilers: Checking arg file compilers: Checking arg files compilers: Checking arg =-Bdynamic compilers: Checking arg --as-needed-lcupti-lcudart--no-as-needed compilers: Checking arg -lcuda compilers: Checking arg --as-needed-lnetcdf_parallel--no-as-needed compilers: Checking arg -lacml_mp compilers: Checking arg --as-needed-lmpich_pgi--no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Checking arg -lrca compilers: Checking arg --as-needed-lsci_pgi_mpi_mp--no-as-needed compilers: Checking arg --as-needed-lsci_pgi_mp--no-as-needed compilers: Checking arg FIPACGARGS compilers: Checking arg FIPAVAL compilers: Checking arg =-x compilers: Checking arg 89 compilers: Checking arg 0x80800842 compilers: Checking arg -x compilers: Checking arg 66 compilers: Checking arg 0x20000 compilers: Checking arg -y compilers: Checking arg 89 compilers: Checking arg 0x40 compilers: Checking arg FIPAVALUE compilers: Checking arg FLUSHVAL compilers: Checking arg FMA3 compilers: Checking arg FMA4 compilers: Checking arg FNEEDCUDA compilers: Checking arg =0 compilers: Checking arg FORCELLVM compilers: Checking arg =0 compilers: Checking arg FORTRANMPI compilers: Checking arg =fmpich compilers: Checking arg FPIC compilers: Checking arg FTNRTL compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg f77 compilers: Checking arg runtime compilers: Checking arg library compilers: Checking arg =-lpgf90 compilers: Checking arg -lpgf90_rpm1 compilers: Checking arg -lpgf902 compilers: Checking arg -lpgf90rtl compilers: Checking arg -lpgftnrtl compilers: Checking arg G77DIR compilers: Checking arg =/usr/lib64/gcc/x86_64-suse-linux/4.3/ compilers: Checking arg G77LIBDIR compilers: Checking arg G77LIBLIB compilers: Checking arg GBASE compilers: Checking arg = compilers: Checking arg GCCDIR compilers: Checking arg =/usr/lib64/gcc/x86_64-suse-linux/4.3 compilers: Checking arg GCCINC compilers: Checking arg =/usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg GCCINC32 compilers: Checking arg =/usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg GCCINC64 compilers: Checking arg =/usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg GCCVERSION compilers: Checking arg =40301 compilers: Checking arg GENCCFF compilers: Checking arg =0 compilers: Checking arg GPPDIR compilers: Checking arg =/usr/include/c++/4.3 compilers: Checking arg /usr/include/c++/4.3/x86_64-suse-linux compilers: Checking arg /usr/include/c++/4.3/backward compilers: Checking arg /usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg GPPDIR32 compilers: Checking arg =/usr/include/c++/4.3 compilers: Checking arg /usr/include/c++/4.3/x86_64-suse-linux/32 compilers: Checking arg /usr/include/c++/4.3/backward compilers: Checking arg /usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg GPPDIR64 compilers: Checking arg =/usr/include/c++/4.3 compilers: Checking arg /usr/include/c++/4.3/x86_64-suse-linux compilers: Checking arg /usr/include/c++/4.3/backward compilers: Checking arg /usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg GSYS compilers: Checking arg = compilers: Checking arg GSYSFLAG compilers: Checking arg = compilers: Checking arg HANDLEOTHER compilers: Checking arg =copyother compilers: Checking arg HASMSMPIFLIBNAME compilers: Checking arg =0 compilers: Checking arg HASMSMPIFLIBNAME32 compilers: Checking arg =0 compilers: Checking arg HASMSMPIFLIBNAME64 compilers: Checking arg =0 compilers: Checking arg HCOMPDIR compilers: Checking arg Directory compilers: Checking arg containing compilers: Checking arg the compilers: Checking arg F90/HPF compilers: Checking arg front compilers: Checking arg ends compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin compilers: Checking arg helpvalues compilers: Checking arg HOSTCPP1ARGS compilers: Checking arg =--llalign compilers: Checking arg HOSTOBJSUFFIX compilers: Checking arg Suffix compilers: Checking arg for compilers: Checking arg object compilers: Checking arg files compilers: Checking arg =o compilers: Checking arg HPF1 compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg HPF compilers: Checking arg phase compilers: Checking arg 1 compilers: Checking arg module compilers: Checking arg =pghpf1 compilers: Checking arg HPF1ARGS compilers: Checking arg Switches compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg HPF compilers: Checking arg compiler compilers: Checking arg HPF2 compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg HPF compilers: Checking arg phase compilers: Checking arg 2 compilers: Checking arg module compilers: Checking arg =pghpf2 compilers: Checking arg HPFE compilers: Checking arg =hpf1 compilers: Checking arg HPFEXT compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg the compilers: Checking arg HPF compilers: Checking arg extractor compilers: Checking arg for compilers: Checking arg inlining compilers: Checking arg =pghpf1_ex compilers: Checking arg HPFSUFFIX compilers: Checking arg Suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg compiled compilers: Checking arg by compilers: Checking arg hpf compilers: Checking arg compiler compilers: Checking arg =HPF compilers: Checking arg hpf compilers: Checking arg HPFX compilers: Checking arg =hpfx compilers: Checking arg HUGELIB compilers: Checking arg HUGEN compilers: Checking arg I8STORAGE compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg include compilers: Checking arg pgfi8st.o compilers: Checking arg object compilers: Checking arg IEEE compilers: Checking arg IEEE compilers: Checking arg conformance compilers: Checking arg IGNORECUDALIB compilers: Checking arg ILPALIGN compilers: Checking arg IMPSW compilers: Checking arg Linker compilers: Checking arg switch compilers: Checking arg for compilers: Checking arg import compilers: Checking arg libraries compilers: Checking arg =-defaultlib: compilers: Checking arg INFORM compilers: Checking arg What compilers: Checking arg level compilers: Checking arg of compilers: Checking arg informative compilers: Checking arg messages compilers: Checking arg =-inform compilers: Checking arg warn compilers: Checking arg INFOTPVAL compilers: Checking arg =-tp compilers: Checking arg bulldozer compilers: Checking arg INLINE compilers: Checking arg INLINEARGLIB compilers: Checking arg Inlining compilers: Checking arg arguments compilers: Checking arg to compilers: Checking arg compiler/extractor compilers: Checking arg INLINEARGS compilers: Checking arg Inlining compilers: Checking arg arguments compilers: Checking arg to compilers: Checking arg compiler/extractor compilers: Checking arg INLINECARGS compilers: Checking arg Inlining compilers: Checking arg arguments compilers: Checking arg to compilers: Checking arg compiler compilers: Checking arg INLINELIST compilers: Checking arg Inlining compilers: Checking arg arguments compilers: Checking arg to compilers: Checking arg compiler/extractor compilers: Checking arg INLINESIZE compilers: Checking arg input compilers: Checking arg INTRINIL compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/lib/libintrinsics.il compilers: Checking arg INTRINLEVEL compilers: Checking arg =4 compilers: Checking arg IPA14 compilers: Checking arg =0x104 compilers: Checking arg IPA14r compilers: Checking arg IPA66 compilers: Checking arg =0x20000 compilers: Checking arg IPA89 compilers: Checking arg =0x80800842 compilers: Checking arg IPAADD compilers: Checking arg Collected compilers: Checking arg command compilers: Checking arg line compilers: Checking arg switches compilers: Checking arg that compilers: Checking arg should compilers: Checking arg added compilers: Checking arg on compilers: Checking arg the compilers: Checking arg recompile compilers: Checking arg IPAADDINLINE compilers: Checking arg IPAADDSW compilers: Checking arg Command compilers: Checking arg line compilers: Checking arg switches compilers: Checking arg that compilers: Checking arg should compilers: Checking arg added compilers: Checking arg on compilers: Checking arg the compilers: Checking arg recompile compilers: Checking arg IPAC2ARGS compilers: Checking arg IPA compilers: Checking arg arguments compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg the compilers: Checking arg f90 compilers: Checking arg compiler compilers: Checking arg back compilers: Checking arg end compilers: Checking arg IPACARGS compilers: Checking arg IPA compilers: Checking arg arguments compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg the compilers: Checking arg compiler compilers: Checking arg IPACGARGS compilers: Checking arg IPADIR compilers: Checking arg Directory compilers: Checking arg containing compilers: Checking arg IPA compilers: Checking arg tools compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin compilers: Checking arg IPAEXPORT compilers: Checking arg IPAEXPORTVAL compilers: Checking arg =1 compilers: Checking arg IPAFASTVESTHELP compilers: Checking arg IPAFASTVESTSW compilers: Checking arg IPAFASTVESTX89 compilers: Checking arg =0 compilers: Checking arg IPAIGNORE0 compilers: Checking arg Command compilers: Checking arg line compilers: Checking arg switches compilers: Checking arg that compilers: Checking arg should compilers: Checking arg not compilers: Checking arg be compilers: Checking arg passed compilers: Checking arg on compilers: Checking arg the compilers: Checking arg recompile compilers: Checking arg =-c compilers: Checking arg -Mkeepasm compilers: Checking arg -Mpreprocess compilers: Checking arg IPAIGNORE1 compilers: Checking arg Command compilers: Checking arg line compilers: Checking arg switches compilers: Checking arg that compilers: Checking arg should compilers: Checking arg not compilers: Checking arg be compilers: Checking arg passed compilers: Checking arg on compilers: Checking arg the compilers: Checking arg recompile compilers: Checking arg =-Mextract compilers: Checking arg -Wi compilers: Checking arg -Minline compilers: Checking arg IPAIGNORE2 compilers: Checking arg Command compilers: Checking arg line compilers: Checking arg switches compilers: Checking arg that compilers: Checking arg should compilers: Checking arg not compilers: Checking arg be compilers: Checking arg passed compilers: Checking arg on compilers: Checking arg the compilers: Checking arg recompile compilers: Checking arg =-L compilers: Checking arg -I compilers: Found include directory: compilers: Checking arg -l compilers: Checking arg -o compilers: Checking arg IPAINLINE compilers: Checking arg IPAINLINELIST compilers: Checking arg IPALD compilers: Checking arg =pgipa compilers: Checking arg IPALIBCSW compilers: Checking arg =--Mipainlinelibc compilers: Checking arg IPALINK compilers: Checking arg Run compilers: Checking arg IPA compilers: Checking arg linker compilers: Checking arg phase compilers: Checking arg 1 compilers: Checking arg IPALINKENABLE compilers: Checking arg IPARECOMPILE compilers: Checking arg IPARGS compilers: Checking arg Arguments compilers: Checking arg to compilers: Checking arg IPA compilers: Checking arg linker compilers: Checking arg IPAVAL compilers: Checking arg =-x compilers: Checking arg 89 compilers: Checking arg 0x80800842 compilers: Checking arg -x compilers: Checking arg 66 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 14 compilers: Checking arg 0x104 compilers: Checking arg -y compilers: Checking arg 89 compilers: Checking arg 0x40 compilers: Checking arg IPAVALUE compilers: Checking arg IPAVERBOSITY compilers: Checking arg =1 compilers: Checking arg IPNOP compilers: Checking arg Arguments compilers: Checking arg to compilers: Checking arg IPA compilers: Checking arg linker compilers: Checking arg =-nop compilers: Checking arg IPOFILE compilers: Checking arg KEEPASM compilers: Checking arg Keeps compilers: Checking arg the compilers: Checking arg assembler compilers: Checking arg file compilers: Checking arg KEEPCCFF compilers: Checking arg =-keep compilers: Checking arg KEEPIL compilers: Checking arg Keeps compilers: Checking arg the compilers: Checking arg intermediate compilers: Checking arg C++ compilers: Checking arg .il compilers: Checking arg and compilers: Checking arg F90 compilers: Checking arg .ilm compilers: Checking arg files compilers: Checking arg KEEPOBJ compilers: Checking arg Keep compilers: Checking arg object compilers: Checking arg file compilers: Checking arg KEEPPREASM compilers: Checking arg Keep compilers: Checking arg preassembler compilers: Checking arg file compilers: Checking arg KEEPPREPRO compilers: Checking arg Keep compilers: Checking arg preprocessor compilers: Checking arg file compilers: Checking arg KEEPTEMP compilers: Checking arg Keep compilers: Checking arg temporary compilers: Checking arg files compilers: Checking arg LC compilers: Checking arg =-lgcc compilers: Checking arg -lc compilers: Checking arg -lgcc compilers: Checking arg LCRT1 compilers: Checking arg =/usr/lib64/crt1.o compilers: Checking arg LCRTB compilers: Checking arg =/usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Checking arg LCRTBDEF compilers: Checking arg =/usr/lib64/gcc/x86_64-suse-linux/4.3/crtbegin.o compilers: Checking arg LCRTE compilers: Checking arg =/usr/lib64/gcc/x86_64-suse-linux/4.3/crtend.o compilers: Checking arg LCRTI compilers: Checking arg =/usr/lib64/crti.o compilers: Checking arg LCRTN compilers: Checking arg =/usr/lib64/crtn.o compilers: Checking arg LCUDAFORLIB compilers: Checking arg LCUDALIB compilers: Checking arg LD compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg loader compilers: Checking arg =ld compilers: Checking arg LDARGS compilers: Checking arg Loader compilers: Checking arg arguments compilers: Checking arg LDDIR compilers: Checking arg Directory compilers: Checking arg containing compilers: Checking arg loader compilers: Checking arg =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin compilers: Checking arg LDINPUTPOST compilers: Checking arg LDINPUTPRE compilers: Checking arg LDLIBARGS compilers: Checking arg Loader compilers: Checking arg arguments compilers: Checking arg =-L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Checking arg -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Checking arg -L/opt/cray/nvidia/default/lib64 compilers: Checking arg -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Checking arg -L/opt/cray/atp/1.7.5/lib compilers: Checking arg LDLIBS compilers: Checking arg Loader compilers: Checking arg libraries compilers: Checking arg =LIB:/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Checking arg LIB:/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Checking arg LIB:/opt/cray/dmapp/default/lib64 compilers: Checking arg LIB:/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg LIB:/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Checking arg LIB:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Checking arg LIB:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Checking arg LIB:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Checking arg LIB:/opt/cray/nvidia/default/lib64 compilers: Checking arg LIB:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Checking arg LIB:/opt/cray/atp/1.7.5/lib compilers: Checking arg lib:cuda compilers: Checking arg lib:acml_mp compilers: Checking arg lib:AtpSigHandler compilers: Checking arg lib:AtpSigHCommData compilers: Checking arg lib:rca compilers: Checking arg LDSO compilers: Checking arg =/lib64/ld-linux-x86-64.so.2 compilers: Checking arg LDSWITCHES compilers: Checking arg Loader compilers: Checking arg switches compilers: Checking arg LEGACY compilers: Checking arg Legacy compilers: Checking arg language compilers: Checking arg definition compilers: Checking arg LEVENTI compilers: Checking arg LFC compilers: Checking arg =-lgfortran compilers: Checking arg LIBDIR compilers: Checking arg Standard compilers: Checking arg linker compilers: Checking arg library compilers: Checking arg directory compilers: Checking arg =/usr/lib64 compilers: Checking arg LIBMEMIL compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/lib/libmem.il compilers: Checking arg LIBSSW compilers: Checking arg Linker compilers: Checking arg switch compilers: Checking arg for compilers: Checking arg system compilers: Checking arg libraries compilers: Checking arg =-l compilers: Checking arg LIBSUFFIX compilers: Checking arg Suffix compilers: Checking arg for compilers: Checking arg library compilers: Checking arg files compilers: Checking arg =a compilers: Checking arg so compilers: Checking arg LIBSW compilers: Checking arg Linker compilers: Checking arg switch compilers: Checking arg for compilers: Checking arg libraries compilers: Checking arg =-l compilers: Checking arg LIBSW_NOLIB compilers: Checking arg Linker compilers: Checking arg switch compilers: Checking arg for compilers: Checking arg libraries compilers: Checking arg with compilers: Checking arg names compilers: Checking arg that compilers: Checking arg don't compilers: Checking arg begin compilers: Checking arg with compilers: Checking arg lib compilers: Checking arg =-l compilers: Checking arg LINITMP compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/libso/initmp.o compilers: Checking arg LINKNOBJSUFFIX compilers: Checking arg Non-object compilers: Checking arg suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg linker compilers: Checking arg =a compilers: Checking arg lo compilers: Checking arg la compilers: Checking arg LINKOBJSUFFIX compilers: Checking arg Object compilers: Checking arg suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg linker compilers: Checking arg =o compilers: Checking arg LINKSUFFIX compilers: Checking arg Suffixes compilers: Checking arg to compilers: Checking arg be compilers: Checking arg passed compilers: Checking arg to compilers: Checking arg linker compilers: Checking arg =o compilers: Checking arg a compilers: Checking arg lo compilers: Checking arg la compilers: Checking arg LINUXCOMMON compilers: Checking arg =-quad compilers: Checking arg LLVMFLAGS compilers: Checking arg LM compilers: Checking arg =-lm compilers: Checking arg LMP compilers: Checking arg =-lpgmp compilers: Checking arg -Bdynamic compilers: Checking arg -lnuma compilers: Checking arg -lpthread compilers: Checking arg LMP_ONLYMP compilers: Checking arg =-lpgmp compilers: Checking arg LMPILIB compilers: Checking arg LMPIPROFLIB compilers: Checking arg LOCALBINDLIB compilers: Checking arg LOCALBINDPATHS compilers: Checking arg LOCALCOMPLIB compilers: Checking arg Local compilers: Checking arg compiler compilers: Checking arg library compilers: Checking arg directory compilers: Checking arg LOCALCOMPLIBLF compilers: Checking arg LOCALDEFS compilers: Checking arg LOCALRC compilers: Checking arg =YES compilers: Checking arg LPROFLIB compilers: Checking arg LPROFO compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/libso/init_pgpf.o compilers: Checking arg LRTLIB compilers: Checking arg =-lrt compilers: Checking arg -lpthread compilers: Checking arg LRTLIBNAME compilers: Checking arg =-lrt compilers: Checking arg -lpthread compilers: Checking arg LSCALAPACK compilers: Checking arg LTHREAD compilers: Checking arg =-lpthread compilers: Checking arg LTRACE compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/libso/trace_init.o compilers: Checking arg MAJOR compilers: Checking arg Major compilers: Checking arg release compilers: Checking arg version compilers: Checking arg =2014 compilers: Checking arg MALIGN compilers: Checking arg MCUDADEF compilers: Checking arg MCUDAEMUDEF compilers: Checking arg MEDIUM compilers: Checking arg MICLINKARGS compilers: Checking arg MPDEFCPP compilers: Checking arg MPDEFCPPDEF compilers: Checking arg MPFAIR compilers: Checking arg MPFAIRDEF compilers: Checking arg MPI_EXTRAFTNOBJ compilers: Checking arg MPIBASEDIR compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich compilers: Checking arg MPIBASELIB compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/lib compilers: Checking arg MPIINC compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/include compilers: Checking arg MPILIB compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/lib compilers: Checking arg MPILIBDIR compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/lib compilers: Checking arg MPILIBDIRNAME compilers: Checking arg =libso compilers: Checking arg MPILIBINC compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin/../mpi/mpich/include compilers: Checking arg MPILIBNAME compilers: Checking arg =mpich compilers: Checking arg MPIMSINC compilers: Checking arg MPIMSLIB compilers: Checking arg MPIMSLIBNAME compilers: Checking arg =msmpi compilers: Checking arg MPISGIDIR compilers: Checking arg =/opt/sgi/mpt/mpt-2.06 compilers: Checking arg MPISGIINC compilers: Checking arg =/opt/sgi/mpt/mpt-2.06/include compilers: Checking arg MPISGILIB compilers: Checking arg =/opt/sgi/mpt/mpt-2.06/lib compilers: Checking arg MPISGIROOT compilers: Checking arg MPITYPE compilers: Checking arg =MPICH compilers: Checking arg MPIUDIR compilers: Checking arg MPSET compilers: Checking arg MPSETCPP compilers: Checking arg MPSETDEF compilers: Checking arg MPSETDEFCPP compilers: Checking arg MSGTPVAL compilers: Checking arg =-tp compilers: Checking arg bulldozer compilers: Checking arg MSLINK compilers: Checking arg MSMPI_INC compilers: Checking arg MSMPI_LIB32 compilers: Checking arg MSMPI_LIB64 compilers: Checking arg MSMPIDIR compilers: Checking arg MSMPIFLIBNAME compilers: Checking arg =msmpifec compilers: Checking arg MSMPIINC compilers: Checking arg MSMPILIB32 compilers: Checking arg MSMPILIB64 compilers: Checking arg MVECT compilers: Checking arg Collected compilers: Checking arg set compilers: Checking arg of compilers: Checking arg -Mvect compilers: Checking arg options compilers: Checking arg NEEDACCLIB compilers: Checking arg =0 compilers: Checking arg NEEDCUDA30 compilers: Checking arg =0 compilers: Checking arg NEEDCUDA42 compilers: Checking arg =0 compilers: Checking arg NEEDCUDA50 compilers: Checking arg =0 compilers: Checking arg NEEDCUDA55 compilers: Checking arg =0 compilers: Checking arg NKEY compilers: Checking arg =1 compilers: Checking arg NOASM compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg generate compilers: Checking arg asm compilers: Checking arg file compilers: Checking arg NOFRAME compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg -Mnoframe compilers: Checking arg is compilers: Checking arg selected compilers: Checking arg NOILM compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg generate compilers: Checking arg .ilm compilers: Checking arg file compilers: Checking arg NOLLALIGN compilers: Checking arg NOOPENMP compilers: Checking arg NOPGIRPATH compilers: Checking arg NORPATH compilers: Checking arg NOSGIMP compilers: Checking arg NOSIMD256 compilers: Checking arg NOSTARTUP compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg exclude compilers: Checking arg standard compilers: Checking arg startup compilers: Checking arg object compilers: Checking arg files compilers: Checking arg NOSTDCPPLIBS compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg exclude compilers: Checking arg standard compilers: Checking arg C++ compilers: Checking arg language compilers: Checking arg libraries compilers: Checking arg NOSTDFTNLIBS compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg exclude compilers: Checking arg standard compilers: Checking arg Fortran compilers: Checking arg language compilers: Checking arg libraries compilers: Checking arg NOSTDLIBDIRS compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg exclude compilers: Checking arg standard compilers: Checking arg library compilers: Checking arg directories compilers: Checking arg NOSTDLIBPATHS compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg exclude compilers: Checking arg standard compilers: Checking arg library compilers: Checking arg directories compilers: Checking arg from compilers: Checking arg rpath compilers: Checking arg NOSTDLIBS compilers: Checking arg Indicates compilers: Checking arg whether compilers: Checking arg to compilers: Checking arg exclude compilers: Checking arg standard compilers: Checking arg libraries compilers: Checking arg NOUNIFIED compilers: Checking arg =0 compilers: Checking arg NOUNIFIEDMSG compilers: Checking arg NOWARN compilers: Checking arg Suppress compilers: Checking arg warning compilers: Checking arg messages compilers: Checking arg NULLINPUT compilers: Checking arg =/dev/null compilers: Checking arg NUMADYNAMIC compilers: Checking arg =-Bdynamic compilers: Checking arg NUMALIBNAME compilers: Checking arg =-lnuma compilers: Checking arg NUMALIBS compilers: Checking arg =-lnuma compilers: Checking arg NUMAOBJS compilers: Checking arg NUMAOBJSDEF compilers: Checking arg NVILINKARGS compilers: Checking arg OBJDIR compilers: Checking arg default compilers: Checking arg directory compilers: Checking arg in compilers: Checking arg which compilers: Checking arg to compilers: Checking arg keep compilers: Checking arg object compilers: Checking arg files compilers: Checking arg OBJSUFFIX compilers: Checking arg Suffix compilers: Checking arg for compilers: Checking arg object compilers: Checking arg files compilers: Checking arg =o compilers: Checking arg OBJSUFFIXES compilers: Checking arg Suffixes compilers: Checking arg for compilers: Checking arg object compilers: Checking arg files compilers: Checking arg =o compilers: Checking arg OEM_INFO compilers: Checking arg =64-bit compilers: Checking arg target compilers: Checking arg on compilers: Checking arg x86-64 compilers: Checking arg Linux compilers: Checking arg -tp compilers: Checking arg bulldozer compilers: Checking arg OFEDLIBDIR compilers: Checking arg =environment(OFEDLIBDIR) compilers: Checking arg OLDSTDINC compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/include compilers: Checking arg OMPINIT compilers: Checking arg =0 compilers: Checking arg OMPINITOBJ compilers: Checking arg OMPLINKFILE compilers: Checking arg OPTLEVEL compilers: Checking arg Compiler compilers: Checking arg optimization compilers: Checking arg level compilers: Checking arg =1 compilers: Checking arg OPTLEVELDEF compilers: Checking arg Default compilers: Checking arg optimization compilers: Checking arg level compilers: Checking arg without compilers: Checking arg -O compilers: Checking arg =1 compilers: Checking arg OPTLEVELINITDEF compilers: Checking arg Initial compilers: Checking arg default compilers: Checking arg optimization compilers: Checking arg level compilers: Checking arg without compilers: Checking arg -O compilers: Checking arg =1 compilers: Checking arg OPTLEVELINITDEF1 compilers: Checking arg Initial compilers: Checking arg default compilers: Checking arg optimization compilers: Checking arg level compilers: Checking arg without compilers: Checking arg -O compilers: Checking arg =1 compilers: Checking arg OPTLEVELMAX compilers: Checking arg Maximum compilers: Checking arg legal compilers: Checking arg opt compilers: Checking arg level compilers: Checking arg =4 compilers: Checking arg OPTLEVELMIN compilers: Checking arg Minimum compilers: Checking arg legal compilers: Checking arg opt compilers: Checking arg level compilers: Checking arg =0 compilers: Checking arg OUTFILE compilers: Checking arg Output compilers: Checking arg file compilers: Checking arg name compilers: Checking arg PAPIDIR compilers: Checking arg Directory compilers: Checking arg containing compilers: Checking arg libpapi.a compilers: Checking arg =/usr/local/lib compilers: Checking arg PATH compilers: Checking arg =/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin compilers: Checking arg PGF77LIB compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg f77 compilers: Checking arg runtime compilers: Checking arg library compilers: Checking arg =-lpgftnrtl compilers: Checking arg PGF90LIB compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg f90 compilers: Checking arg runtime compilers: Checking arg libraries compilers: Checking arg =-lpgf90 compilers: Checking arg -lpgf90_rpm1 compilers: Checking arg -lpgf902 compilers: Checking arg -lpgf90rtl compilers: Checking arg -lpgftnrtl compilers: Checking arg PGILD compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/lib/pgi.ld compilers: Checking arg PGINUMALIBS compilers: Checking arg PGISTATIC compilers: Checking arg PGISTATICX compilers: Checking arg PGIUNSTATIC compilers: Checking arg PGIUNSTATICX compilers: Checking arg PGLEN compilers: Checking arg =64 compilers: Checking arg PGSYS compilers: Checking arg =lin86 compilers: Checking arg PINOBJ compilers: Checking arg POSTOPTIONS compilers: Checking arg Default compilers: Checking arg options compilers: Checking arg to compilers: Checking arg follow compilers: Checking arg command compilers: Checking arg line compilers: Checking arg PREASM compilers: Checking arg Whether compilers: Checking arg to compilers: Checking arg run compilers: Checking arg a compilers: Checking arg preassembler compilers: Checking arg PREASMCMD compilers: Checking arg Preassembler compilers: Checking arg command compilers: Checking arg =smart compilers: Checking arg PREASMSUFFIX compilers: Checking arg Suffix compilers: Checking arg of compilers: Checking arg preassembler compilers: Checking arg file compilers: Checking arg =sm compilers: Checking arg PREFIX compilers: Checking arg =pg compilers: Checking arg PREOPTIONS compilers: Checking arg Default compilers: Checking arg options compilers: Checking arg to compilers: Checking arg preceed compilers: Checking arg command compilers: Checking arg line compilers: Checking arg PREPRO compilers: Checking arg Name compilers: Checking arg of compilers: Checking arg preprocessor compilers: Checking arg program compilers: Checking arg =pgprepro compilers: Checking arg PREPROARGS compilers: Checking arg Arguments compilers: Checking arg to compilers: Checking arg preprocessor compilers: Checking arg program compilers: Checking arg PREPROCONLY compilers: Checking arg Stop compilers: Checking arg after compilers: Checking arg preprocessor compilers: Checking arg PREPRODIR compilers: Checking arg Directory compilers: Checking arg containing compilers: Checking arg preprocessor compilers: Checking arg program compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin compilers: Checking arg PREPROSUFFIX compilers: Checking arg Suffix compilers: Checking arg of compilers: Checking arg preprocessor compilers: Checking arg file compilers: Checking arg =i compilers: Checking arg PROFFLAG compilers: Checking arg PROFILE compilers: Checking arg Use compilers: Checking arg profile compilers: Checking arg startup compilers: Checking arg and compilers: Checking arg libraries compilers: Checking arg PROFILESW compilers: Checking arg Use compilers: Checking arg profile compilers: Checking arg startup compilers: Checking arg and compilers: Checking arg libraries compilers: Checking arg RADEONBIN compilers: Checking arg =tahiti compilers: Checking arg RADEONBINS compilers: Checking arg =tahiti compilers: Checking arg realfiles compilers: Checking arg SCALAPACK_ACML compilers: Checking arg =1 compilers: Checking arg SCALARSSE compilers: Checking arg SETDOCCFF compilers: Checking arg SIMD256 compilers: Checking arg =0 compilers: Checking arg SITEASMPPSUFFIX compilers: Checking arg SITEASMSUFFIX compilers: Checking arg SITECPPSUFFIX compilers: Checking arg SITECSUFFIX compilers: Checking arg SITECUFPPSUFFIX compilers: Checking arg SITECUFSUFFIX compilers: Checking arg SITEDEF compilers: Checking arg SITEF77PPSUFFIX compilers: Checking arg SITEF77SUFFIX compilers: Checking arg SITEF90PPSUFFIX compilers: Checking arg SITEF90SUFFIX compilers: Checking arg SITEHPFPPSUFFIX compilers: Checking arg SITEHPFSUFFIX compilers: Checking arg SITEINC compilers: Checking arg SITELIB compilers: Checking arg SITELIBSUFFIX compilers: Checking arg SITEOBJSUFFIX compilers: Checking arg SITERPATH compilers: Checking arg SITERPATHS compilers: Checking arg SMART compilers: Checking arg Smart compilers: Checking arg assembly compilers: Checking arg rewrite compilers: Checking arg tool compilers: Checking arg =pgsmart compilers: Checking arg SMARTARGS compilers: Checking arg Options compilers: Checking arg to compilers: Checking arg Smart compilers: Checking arg assembly compilers: Checking arg rewrite compilers: Checking arg tool compilers: Checking arg SMARTDIR compilers: Checking arg Smart compilers: Checking arg assembly compilers: Checking arg rewrite compilers: Checking arg tool compilers: Checking arg directory compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/bin compilers: Checking arg SRCFILES compilers: Checking arg List compilers: Checking arg of compilers: Checking arg source compilers: Checking arg files compilers: Checking arg SRCSUFFIX compilers: Checking arg Source compilers: Checking arg file compilers: Checking arg suffixes compilers: Checking arg =c compilers: Checking arg i compilers: Checking arg cpp compilers: Checking arg asm compilers: Checking arg f compilers: Checking arg f90 compilers: Checking arg F compilers: Checking arg F90 compilers: Checking arg cuf compilers: Checking arg CUF compilers: Checking arg hpf compilers: Checking arg HPF compilers: Checking arg SSE compilers: Checking arg =1 compilers: Checking arg SSE2 compilers: Checking arg =1 compilers: Checking arg SSE3 compilers: Checking arg =1 compilers: Checking arg SSE41 compilers: Checking arg SSE42 compilers: Checking arg SSE4A compilers: Checking arg =1 compilers: Checking arg SSEDEFS compilers: Checking arg =__SSE__ compilers: Checking arg __MMX__ compilers: Checking arg __SSE2__ compilers: Checking arg __SSE3__ compilers: Checking arg __SSSE3__ compilers: Checking arg __SSE4A__ compilers: Checking arg __ABM__ compilers: Checking arg SSSE3 compilers: Checking arg =1 compilers: Checking arg status compilers: Checking arg =0 compilers: Checking arg STDDEF compilers: Checking arg =unix compilers: Checking arg __unix compilers: Checking arg __unix__ compilers: Checking arg linux compilers: Checking arg __linux compilers: Checking arg __linux__ compilers: Checking arg __NO_MATH_INLINES compilers: Checking arg __x86_64 compilers: Checking arg __x86_64__ compilers: Checking arg __LONG_MAX__=9223372036854775807L compilers: Checking arg __SIZE_TYPE__=unsigned compilers: Checking arg long compilers: Checking arg int compilers: Checking arg __PTRDIFF_TYPE__=long compilers: Checking arg int compilers: Checking arg __THROW= compilers: Checking arg __extension__= compilers: Checking arg __amd_64__amd64__ compilers: Checking arg __k8 compilers: Checking arg __k8__ compilers: Checking arg __SSE__ compilers: Checking arg __MMX__ compilers: Checking arg __SSE2__ compilers: Checking arg __SSE3__ compilers: Checking arg __SSSE3__ compilers: Checking arg __SSE4A__ compilers: Checking arg __ABM__ compilers: Checking arg STDINC compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44 compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/include compilers: Checking arg /usr/local/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/include-fixed compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/include compilers: Checking arg /usr/include compilers: Checking arg STDOBJDIR compilers: Checking arg Directory compilers: Checking arg containing compilers: Checking arg standard compilers: Checking arg startup compilers: Checking arg object compilers: Checking arg files compilers: Checking arg =/usr/lib64 compilers: Checking arg STDPRED compilers: Checking arg =-predicate compilers: Checking arg #machine(x86_64) compilers: Checking arg #lint(off) compilers: Checking arg #system(posix) compilers: Checking arg #cpu(x86_64) compilers: Checking arg STDRPATH compilers: Checking arg STDRPATHLF compilers: Checking arg STDRPATHMP compilers: Checking arg STDRPATHSO compilers: Checking arg =-rpath compilers: Checking arg /opt/pgi/14.2.0/linux86-64/14.2/libso compilers: Checking arg STRICTBMODE compilers: Checking arg =-x compilers: Checking arg 123 compilers: Checking arg 4 compilers: Checking arg switches compilers: Checking arg =-tp=bulldozer compilers: Checking arg -Bdynamic compilers: Checking arg -D__CRAYXE compilers: Checking arg -D__CRAY_INTERLAGOS compilers: Checking arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Checking arg -pgf90libs compilers: Checking arg -show compilers: Checking arg -I/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include compilers: Found include directory: /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include compilers: Checking arg -I/opt/cray/hdf5-parallel/1.8.13/PGI/141/include compilers: Found include directory: /opt/cray/hdf5-parallel/1.8.13/PGI/141/include compilers: Checking arg -I/opt/acml/5.3.1/pgi64_fma4_mp/include compilers: Found include directory: /opt/acml/5.3.1/pgi64_fma4_mp/include compilers: Checking arg -I/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include compilers: Found include directory: /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include compilers: Checking arg -I/opt/cray/libsci/13.0.1/PGI/141/interlagos/include compilers: Found include directory: /opt/cray/libsci/13.0.1/PGI/141/interlagos/include compilers: Checking arg -I/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include compilers: Found include directory: /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include compilers: Checking arg -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include compilers: Found include directory: /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include compilers: Checking arg -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include compilers: Found include directory: /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include compilers: Checking arg -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include compilers: Found include directory: /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include compilers: Checking arg -I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include compilers: Found include directory: /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include compilers: Checking arg -I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include compilers: Found include directory: /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include compilers: Checking arg -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include compilers: Found include directory: /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include compilers: Checking arg -I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include compilers: Found include directory: /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include compilers: Checking arg -I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include compilers: Found include directory: /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include compilers: Checking arg -I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include compilers: Found include directory: /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include compilers: Checking arg -I/opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include compilers: Found include directory: /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include compilers: Checking arg -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include compilers: Found include directory: /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include compilers: Checking arg -I/opt/cray-hss-devel/7.2.0/include compilers: Found include directory: /opt/cray-hss-devel/7.2.0/include compilers: Checking arg -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib compilers: Checking arg -L/opt/acml/5.3.1/pgi64_fma4_mp/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib compilers: Checking arg -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 compilers: Checking arg -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 compilers: Checking arg -L/opt/cray/nvidia/default/lib64 compilers: Checking arg -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 compilers: Checking arg -L/opt/cray/atp/1.7.5/lib compilers: Checking arg -Wl,--as-needed,-lcupti,-lcudart,--no-as-needed compilers: Checking arg -lcuda compilers: Checking arg -Wl,--as-needed,-lnetcdf_parallel,--no-as-needed compilers: Checking arg -lacml_mp compilers: Checking arg -Wl,--as-needed,-lmpich_pgi,--no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Checking arg -Wl,--undefined=_ATP_Data_Globals compilers: Checking arg -Wl,--undefined=__atpHandlerInstall compilers: Checking arg -lrca compilers: Checking arg -Wl,--as-needed,-lsci_pgi_mpi_mp,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lsci_pgi_mp,--no-as-needed compilers: Checking arg SYS32 compilers: Checking arg =linux86 compilers: Checking arg SYS64 compilers: Checking arg =linux86-64 compilers: Checking arg SYSACCELS compilers: Checking arg =tesla compilers: Checking arg radeon compilers: Checking arg SYSACCLIBS compilers: Checking arg =nd compilers: Checking arg aod compilers: Checking arg od compilers: Checking arg SYSV_PROF compilers: Checking arg Is compilers: Checking arg System compilers: Checking arg V compilers: Checking arg profiling compilers: Checking arg used compilers: Checking arg TARGET compilers: Checking arg Target compilers: Checking arg system compilers: Checking arg =linux86-64 compilers: Checking arg TARGETARCH compilers: Checking arg =64 compilers: Checking arg TARGETCOMMON compilers: Checking arg =-x compilers: Checking arg 70 compilers: Checking arg 0x8000 compilers: Checking arg -x compilers: Checking arg 122 compilers: Checking arg 1 compilers: Checking arg -x compilers: Checking arg 125 compilers: Checking arg 0x20000 compilers: Checking arg -x compilers: Checking arg 117 compilers: Checking arg 0x1000 compilers: Checking arg THROW compilers: Checking arg =__THROW= compilers: Checking arg TIMEOBJ compilers: Checking arg TIMER compilers: Checking arg TOOLKITFLAG compilers: Checking arg =-x compilers: Checking arg 189 compilers: Checking arg 0x20 compilers: Checking arg TPVAL compilers: Checking arg =-tp compilers: Checking arg bulldozer compilers: Checking arg TRACEBACK compilers: Checking arg =OFF compilers: Checking arg [ON compilers: Checking arg OFF] compilers: Checking arg USECUDAROOT compilers: Checking arg =/opt/pgi/14.2.0/linux86-64/2014/cuda/5.0 compilers: Checking arg USERASMPPSUFFIX compilers: Checking arg USERASMSUFFIX compilers: Checking arg USERCPPSUFFIX compilers: Checking arg USERCSUFFIX compilers: Checking arg USERCUFPPSUFFIX compilers: Checking arg USERCUFSUFFIX compilers: Checking arg USERF77PPSUFFIX compilers: Checking arg USERF77SUFFIX compilers: Checking arg USERF90PPSUFFIX compilers: Checking arg USERF90SUFFIX compilers: Checking arg USERHPFPPSUFFIX compilers: Checking arg USERHPFSUFFIX compilers: Checking arg USERLIBSUFFIX compilers: Checking arg USEROBJSUFFIX compilers: Checking arg USESSELIBS compilers: Checking arg =1 compilers: Checking arg USETPVAL compilers: Checking arg =-tp compilers: Checking arg bulldozer compilers: Checking arg USRDDEF compilers: Checking arg =-D__CRAYXE compilers: Checking arg -D__CRAY_INTERLAGOS compilers: Checking arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Checking arg USRDEFDEF compilers: Checking arg =-def compilers: Checking arg __CRAYXE compilers: Checking arg -def compilers: Checking arg __CRAY_INTERLAGOS compilers: Checking arg -def compilers: Checking arg __CRAYXT_COMPUTE_LINUX_TARGET compilers: Checking arg USRFTNRTL compilers: Checking arg Additional compilers: Checking arg fortran compilers: Checking arg runtime compilers: Checking arg libraries compilers: Checking arg =-lpgf90 compilers: Checking arg -lpgf90_rpm1 compilers: Checking arg -lpgf902 compilers: Checking arg -lpgf90rtl compilers: Checking arg -lpgftnrtl compilers: Checking arg USRINC compilers: Checking arg =/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include compilers: Checking arg /opt/cray/hdf5-parallel/1.8.13/PGI/141/include compilers: Checking arg /opt/acml/5.3.1/pgi64_fma4_mp/include compilers: Checking arg /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include compilers: Checking arg /opt/cray/libsci/13.0.1/PGI/141/interlagos/include compilers: Checking arg /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include compilers: Checking arg /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include compilers: Checking arg /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include compilers: Checking arg /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include compilers: Checking arg /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include compilers: Checking arg /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include compilers: Checking arg /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include compilers: Checking arg /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include compilers: Checking arg /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include compilers: Checking arg /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include compilers: Checking arg /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include compilers: Checking arg /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include compilers: Checking arg /opt/cray-hss-devel/7.2.0/include compilers: Checking arg USRRPATH compilers: Checking arg USRSTDINC compilers: Checking arg VECT compilers: Checking arg Vector compilers: Checking arg optimization compilers: Checking arg level compilers: Checking arg =48 compilers: Checking arg VECTSSE compilers: Checking arg VERBOSE compilers: Checking arg Display compilers: Checking arg each compilers: Checking arg command compilers: Checking arg as compilers: Checking arg it compilers: Checking arg is compilers: Checking arg executed compilers: Checking arg VERSION compilers: Checking arg Display compilers: Checking arg version compilers: Checking arg of compilers: Checking arg driver compilers: Checking arg and compilers: Checking arg tools compilers: Checking arg WRSTR compilers: Checking arg =-x compilers: Checking arg 119 compilers: Checking arg 0x20 compilers: Checking arg X86_64 compilers: Checking arg =1 compilers: Checking arg X86_64TARGET compilers: Checking arg =1 compilers: Checking arg ZCDEF compilers: Checking arg =-x compilers: Checking arg 117 compilers: Checking arg 0x600 compilers: Checking arg ZCFLAG compilers: Checking arg =--zc_eh compilers: Checking arg ZCLIBS compilers: Checking arg =-lzceh compilers: Checking arg -lgcc_eh compilers: Checking arg --eh-frame-hdr compilers: Checking arg Known compilers: Checking arg Phases: compilers: Checking arg Extract compilers: Checking arg subprograms compilers: Checking arg to compilers: Checking arg an compilers: Checking arg extract compilers: Checking arg library compilers: Checking arg for compilers: Checking arg later compilers: Checking arg inlining: compilers: Checking arg C compilers: Checking arg Extractor compilers: Checking arg Fortran compilers: Checking arg 77 compilers: Checking arg Extractor compilers: Checking arg Fortran compilers: Checking arg 90 compilers: Checking arg Compiler compilers: Checking arg phase compilers: Checking arg 1 compilers: Checking arg High compilers: Checking arg Performance compilers: Checking arg Fortran compilers: Checking arg Extractor compilers: Checking arg Preprocess compilers: Checking arg files: compilers: Checking arg Preprocess compilers: Checking arg any compilers: Checking arg file compilers: Checking arg Compile compilers: Checking arg or compilers: Checking arg Assemble compilers: Checking arg source compilers: Checking arg files: compilers: Checking arg C compilers: Checking arg Compiler compilers: Checking arg Fortran compilers: Checking arg 77 compilers: Checking arg Compiler compilers: Checking arg f90x compilers: Checking arg cufx compilers: Checking arg hpfx compilers: Checking arg Fortran compilers: Checking arg 90 compilers: Checking arg Compiler compilers: Checking arg phase compilers: Checking arg 2 compilers: Checking arg Assembler compilers: Checking arg Preprocess compilers: Checking arg assembler compilers: Checking arg files compilers: Checking arg IPA compilers: Checking arg Linker: compilers: Checking arg IPA compilers: Checking arg Propagation compilers: Checking arg Link compilers: Checking arg object compilers: Checking arg files compilers: Checking arg to compilers: Checking arg executable: compilers: Checking arg Linker ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:427) TESTING: checkMPICHorOpenMPI from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:427) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c" # 1 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 5 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 10 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 12 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 41 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 50 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 1 "/usr/include/stdint.h" # 17 "/usr/include/stdint.h" # 21 "/usr/include/stdint.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 27 "/usr/include/stdint.h" # 1 "/usr/include/bits/wchar.h" # 18 "/usr/include/bits/wchar.h" # 28 "/usr/include/stdint.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/stdint.h" # 30 "/usr/include/stdint.h" # 32 "/usr/include/stdint.h" # 34 "/usr/include/stdint.h" # 37 "/usr/include/stdint.h" typedef signed char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 41 "/usr/include/stdint.h" typedef long int int64_t ; # 48 "/usr/include/stdint.h" typedef unsigned char uint8_t ; typedef unsigned short int uint16_t ; # 52 "/usr/include/stdint.h" typedef unsigned int uint32_t ; # 56 "/usr/include/stdint.h" typedef unsigned long int uint64_t ; # 63 "/usr/include/stdint.h" # 65 "/usr/include/stdint.h" typedef signed char int_least8_t ; typedef short int int_least16_t ; typedef int int_least32_t ; # 70 "/usr/include/stdint.h" typedef long int int_least64_t ; # 76 "/usr/include/stdint.h" typedef unsigned char uint_least8_t ; typedef unsigned short int uint_least16_t ; typedef unsigned int uint_least32_t ; # 81 "/usr/include/stdint.h" typedef unsigned long int uint_least64_t ; # 88 "/usr/include/stdint.h" # 90 "/usr/include/stdint.h" typedef signed char int_fast8_t ; # 93 "/usr/include/stdint.h" typedef long int int_fast16_t ; typedef long int int_fast32_t ; typedef long int int_fast64_t ; # 103 "/usr/include/stdint.h" typedef unsigned char uint_fast8_t ; # 106 "/usr/include/stdint.h" typedef unsigned long int uint_fast16_t ; typedef unsigned long int uint_fast32_t ; typedef unsigned long int uint_fast64_t ; # 117 "/usr/include/stdint.h" # 120 "/usr/include/stdint.h" typedef long int intptr_t ; # 123 "/usr/include/stdint.h" typedef unsigned long int uintptr_t ; # 133 "/usr/include/stdint.h" # 135 "/usr/include/stdint.h" typedef long int intmax_t ; typedef unsigned long int uintmax_t ; # 146 "/usr/include/stdint.h" # 157 "/usr/include/stdint.h" # 159 "/usr/include/stdint.h" # 164 "/usr/include/stdint.h" # 170 "/usr/include/stdint.h" # 177 "/usr/include/stdint.h" # 182 "/usr/include/stdint.h" # 188 "/usr/include/stdint.h" # 195 "/usr/include/stdint.h" # 205 "/usr/include/stdint.h" # 216 "/usr/include/stdint.h" # 228 "/usr/include/stdint.h" # 240 "/usr/include/stdint.h" # 242 "/usr/include/stdint.h" # 245 "/usr/include/stdint.h" # 249 "/usr/include/stdint.h" # 251 "/usr/include/stdint.h" # 260 "/usr/include/stdint.h" # 264 "/usr/include/stdint.h" # 271 "/usr/include/stdint.h" # 273 "/usr/include/stdint.h" # 278 "/usr/include/stdint.h" # 286 "/usr/include/stdint.h" # 289 "/usr/include/stdint.h" # 299 "/usr/include/stdint.h" # 309 "/usr/include/stdint.h" # 54 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 59 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 82 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 92 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 98 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Datatype ; # 149 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 191 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 205 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 214 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 227 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 248 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 264 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 269 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 275 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 280 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Comm ; # 285 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Group ; # 289 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Win ; # 293 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 297 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef struct ADIOI_FileD * MPI_File ; # 301 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Op ; # 319 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 331 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 341 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 352 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 359 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 363 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1 , MPI_WIN_FLAVOR_ALLOCATE = 2 , MPI_WIN_FLAVOR_DYNAMIC = 3 , MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t ; # 371 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1 , MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t ; # 377 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 380 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_Topo_type { MPI_GRAPH = 1 , MPI_CART = 2 , MPI_DIST_GRAPH = 3 } MPIR_Topo_type ; # 384 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" extern int * const MPI_UNWEIGHTED ; extern int * const MPI_WEIGHTS_EMPTY ; # 395 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef void ( MPI_Handler_function ) ( MPI_Comm * , int * , ... ) ; typedef int ( MPI_Comm_copy_attr_function ) ( MPI_Comm , int , void * , void * , void * , int * ) ; typedef int ( MPI_Comm_delete_attr_function ) ( MPI_Comm , int , void * , void * ) ; typedef int ( MPI_Type_copy_attr_function ) ( MPI_Datatype , int , void * , void * , void * , int * ) ; typedef int ( MPI_Type_delete_attr_function ) ( MPI_Datatype , int , void * , void * ) ; typedef int ( MPI_Win_copy_attr_function ) ( MPI_Win , int , void * , void * , void * , int * ) ; typedef int ( MPI_Win_delete_attr_function ) ( MPI_Win , int , void * , void * ) ; typedef void ( MPI_Comm_errhandler_function ) ( MPI_Comm * , int * , ... ) ; typedef void ( MPI_File_errhandler_function ) ( MPI_File * , int * , ... ) ; typedef void ( MPI_Win_errhandler_function ) ( MPI_Win * , int * , ... ) ; typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn ; typedef MPI_File_errhandler_function MPI_File_errhandler_fn ; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn ; # 416 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 422 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 424 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Errhandler ; # 428 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 433 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 444 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Request ; # 447 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Message ; # 450 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef void ( MPI_User_function ) ( void * , void * , int * , MPI_Datatype * ) ; # 453 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int ( MPI_Copy_function ) ( MPI_Comm , int , void * , void * , void * , int * ) ; typedef int ( MPI_Delete_function ) ( MPI_Comm , int , void * , void * ) ; # 486 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 498 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1 , MPI_COMBINER_DUP = 2 , MPI_COMBINER_CONTIGUOUS = 3 , MPI_COMBINER_VECTOR = 4 , MPI_COMBINER_HVECTOR_INTEGER = 5 , MPI_COMBINER_HVECTOR = 6 , MPI_COMBINER_INDEXED = 7 , MPI_COMBINER_HINDEXED_INTEGER = 8 , MPI_COMBINER_HINDEXED = 9 , MPI_COMBINER_INDEXED_BLOCK = 10 , MPI_COMBINER_STRUCT_INTEGER = 11 , MPI_COMBINER_STRUCT = 12 , MPI_COMBINER_SUBARRAY = 13 , MPI_COMBINER_DARRAY = 14 , MPI_COMBINER_F90_REAL = 15 , MPI_COMBINER_F90_COMPLEX = 16 , MPI_COMBINER_F90_INTEGER = 17 , MPI_COMBINER_RESIZED = 18 , MPI_COMBINER_HINDEXED_BLOCK = 19 } ; # 521 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPI_Info ; # 528 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 538 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 545 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 548 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef long MPI_Aint ; typedef int MPI_Fint ; typedef long long MPI_Count ; # 559 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 563 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 567 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef long long MPI_Offset ; # 574 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef struct MPI_Status { int count_lo ; int count_hi_and_cancelled ; int MPI_SOURCE ; int MPI_TAG ; int MPI_ERROR ; } MPI_Status ; # 583 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" struct MPIR_T_enum_s ; struct MPIR_T_cvar_handle_s ; struct MPIR_T_pvar_handle_s ; struct MPIR_T_pvar_session_s ; # 589 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef struct MPIR_T_enum_s * MPI_T_enum ; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle ; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle ; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session ; # 594 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES ; # 603 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0 , # 609 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_VERBOSITY_USER_BASIC = 221 , MPI_T_VERBOSITY_USER_DETAIL , MPI_T_VERBOSITY_USER_ALL , # 614 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_VERBOSITY_TUNER_BASIC , MPI_T_VERBOSITY_TUNER_DETAIL , MPI_T_VERBOSITY_TUNER_ALL , # 618 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_VERBOSITY_MPIDEV_BASIC , MPI_T_VERBOSITY_MPIDEV_DETAIL , MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t ; # 623 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0 , # 628 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_BIND_NO_OBJECT = 9700 , MPI_T_BIND_MPI_COMM , MPI_T_BIND_MPI_DATATYPE , MPI_T_BIND_MPI_ERRHANDLER , MPI_T_BIND_MPI_FILE , MPI_T_BIND_MPI_GROUP , MPI_T_BIND_MPI_OP , MPI_T_BIND_MPI_REQUEST , MPI_T_BIND_MPI_WIN , MPI_T_BIND_MPI_MESSAGE , MPI_T_BIND_MPI_INFO } MPIR_T_bind_t ; # 642 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0 , # 647 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPI_T_SCOPE_CONSTANT = 60438 , MPI_T_SCOPE_READONLY , MPI_T_SCOPE_LOCAL , MPI_T_SCOPE_GROUP , MPI_T_SCOPE_GROUP_EQ , MPI_T_SCOPE_ALL , MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t ; # 657 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0 , # 662 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" MPIR_T_PVAR_CLASS_FIRST = 240 , MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST , MPI_T_PVAR_CLASS_LEVEL , MPI_T_PVAR_CLASS_SIZE , MPI_T_PVAR_CLASS_PERCENTAGE , MPI_T_PVAR_CLASS_HIGHWATERMARK , MPI_T_PVAR_CLASS_LOWWATERMARK , MPI_T_PVAR_CLASS_COUNTER , MPI_T_PVAR_CLASS_AGGREGATE , MPI_T_PVAR_CLASS_TIMER , MPI_T_PVAR_CLASS_GENERIC , MPIR_T_PVAR_CLASS_LAST , MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t ; # 678 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 680 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 700 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 724 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 726 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE ; extern MPI_Fint * MPI_F_STATUSES_IGNORE ; # 731 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 734 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 738 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 744 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int ( MPI_Grequest_cancel_function ) ( void * , int ) ; typedef int ( MPI_Grequest_free_function ) ( void * ) ; typedef int ( MPI_Grequest_query_function ) ( void * , MPI_Status * ) ; typedef int ( MPIX_Grequest_poll_function ) ( void * , MPI_Status * ) ; typedef int ( MPIX_Grequest_wait_function ) ( int , void * * , double , MPI_Status * ) ; # 751 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 753 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 763 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 768 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 772 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 775 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 781 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 785 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 801 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 833 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 854 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 857 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 859 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int ( MPI_Datarep_conversion_function ) ( void * , MPI_Datatype , int , void * , MPI_Offset , void * ) ; typedef int ( MPI_Datarep_extent_function ) ( MPI_Datatype datatype , MPI_Aint * , void * ) ; # 870 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 876 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 878 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Send ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int MPI_Recv ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Status * status ) ; int MPI_Get_count ( const MPI_Status * status , MPI_Datatype datatype , int * count ) ; int MPI_Bsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int MPI_Ssend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int MPI_Rsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int MPI_Buffer_attach ( void * buffer , int size ) ; int MPI_Buffer_detach ( void * buffer_addr , int * size ) ; int MPI_Isend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ibsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Issend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Irsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Irecv ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Wait ( MPI_Request * request , MPI_Status * status ) ; int MPI_Test ( MPI_Request * request , int * flag , MPI_Status * status ) ; int MPI_Request_free ( MPI_Request * request ) ; int MPI_Waitany ( int count , MPI_Request array_of_requests [ ] , int * indx , MPI_Status * status ) ; int MPI_Testany ( int count , MPI_Request array_of_requests [ ] , int * indx , int * flag , MPI_Status * status ) ; int MPI_Waitall ( int count , MPI_Request array_of_requests [ ] , MPI_Status array_of_statuses [ ] ) ; int MPI_Testall ( int count , MPI_Request array_of_requests [ ] , int * flag , MPI_Status array_of_statuses [ ] ) ; int MPI_Waitsome ( int incount , MPI_Request array_of_requests [ ] , int * outcount , int array_of_indices [ ] , MPI_Status array_of_statuses [ ] ) ; int MPI_Testsome ( int incount , MPI_Request array_of_requests [ ] , int * outcount , int array_of_indices [ ] , MPI_Status array_of_statuses [ ] ) ; int MPI_Iprobe ( int source , int tag , MPI_Comm comm , int * flag , MPI_Status * status ) ; int MPI_Probe ( int source , int tag , MPI_Comm comm , MPI_Status * status ) ; int MPI_Cancel ( MPI_Request * request ) ; int MPI_Test_cancelled ( const MPI_Status * status , int * flag ) ; int MPI_Send_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Bsend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ssend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Rsend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Recv_init ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Request * request ) ; int MPI_Start ( MPI_Request * request ) ; int MPI_Startall ( int count , MPI_Request array_of_requests [ ] ) ; int MPI_Sendrecv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , int dest , int sendtag , void * recvbuf , int recvcount , MPI_Datatype recvtype , int source , int recvtag , MPI_Comm comm , MPI_Status * status ) ; int MPI_Sendrecv_replace ( void * buf , int count , MPI_Datatype datatype , int dest , int sendtag , int source , int recvtag , MPI_Comm comm , MPI_Status * status ) ; int MPI_Type_contiguous ( int count , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_vector ( int count , int blocklength , int stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_hvector ( int count , int blocklength , MPI_Aint stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_indexed ( int count , const int * array_of_blocklengths , const int * array_of_displacements , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_hindexed ( int count , const int * array_of_blocklengths , const MPI_Aint * array_of_displacements , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_struct ( int count , const int * array_of_blocklengths , const MPI_Aint * array_of_displacements , const MPI_Datatype * array_of_types , MPI_Datatype * newtype ) ; int MPI_Address ( const void * location , MPI_Aint * address ) ; int MPI_Type_extent ( MPI_Datatype datatype , MPI_Aint * extent ) ; int MPI_Type_size ( MPI_Datatype datatype , int * size ) ; int MPI_Type_lb ( MPI_Datatype datatype , MPI_Aint * displacement ) ; int MPI_Type_ub ( MPI_Datatype datatype , MPI_Aint * displacement ) ; int MPI_Type_commit ( MPI_Datatype * datatype ) ; int MPI_Type_free ( MPI_Datatype * datatype ) ; int MPI_Get_elements ( const MPI_Status * status , MPI_Datatype datatype , int * count ) ; int MPI_Pack ( const void * inbuf , int incount , MPI_Datatype datatype , void * outbuf , int outsize , int * position , MPI_Comm comm ) ; int MPI_Unpack ( const void * inbuf , int insize , int * position , void * outbuf , int outcount , MPI_Datatype datatype , MPI_Comm comm ) ; int MPI_Pack_size ( int incount , MPI_Datatype datatype , MPI_Comm comm , int * size ) ; int MPI_Barrier ( MPI_Comm comm ) ; int MPI_Bcast ( void * buffer , int count , MPI_Datatype datatype , int root , MPI_Comm comm ) ; int MPI_Gather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int MPI_Gatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * displs , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int MPI_Scatter ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int MPI_Scatterv ( const void * sendbuf , const int * sendcounts , const int * displs , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int MPI_Allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * displs , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Alltoallv ( const void * sendbuf , const int * sendcounts , const int * sdispls , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * rdispls , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Alltoallw ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm ) ; int MPI_Exscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Reduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , int root , MPI_Comm comm ) ; int MPI_Op_create ( MPI_User_function * user_fn , int commute , MPI_Op * op ) ; int MPI_Op_free ( MPI_Op * op ) ; int MPI_Allreduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Reduce_scatter ( const void * sendbuf , void * recvbuf , const int recvcounts [ ] , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Scan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Group_size ( MPI_Group group , int * size ) ; int MPI_Group_rank ( MPI_Group group , int * rank ) ; int MPI_Group_translate_ranks ( MPI_Group group1 , int n , const int ranks1 [ ] , MPI_Group group2 , int ranks2 [ ] ) ; int MPI_Group_compare ( MPI_Group group1 , MPI_Group group2 , int * result ) ; int MPI_Comm_group ( MPI_Comm comm , MPI_Group * group ) ; int MPI_Group_union ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int MPI_Group_intersection ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int MPI_Group_difference ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int MPI_Group_incl ( MPI_Group group , int n , const int ranks [ ] , MPI_Group * newgroup ) ; int MPI_Group_excl ( MPI_Group group , int n , const int ranks [ ] , MPI_Group * newgroup ) ; int MPI_Group_range_incl ( MPI_Group group , int n , int ranges [ ] [ 3 ] , MPI_Group * newgroup ) ; int MPI_Group_range_excl ( MPI_Group group , int n , int ranges [ ] [ 3 ] , MPI_Group * newgroup ) ; int MPI_Group_free ( MPI_Group * group ) ; int MPI_Comm_size ( MPI_Comm comm , int * size ) ; int MPI_Comm_rank ( MPI_Comm comm , int * rank ) ; int MPI_Comm_compare ( MPI_Comm comm1 , MPI_Comm comm2 , int * result ) ; int MPI_Comm_dup ( MPI_Comm comm , MPI_Comm * newcomm ) ; int MPI_Comm_dup_with_info ( MPI_Comm comm , MPI_Info info , MPI_Comm * newcomm ) ; int MPI_Comm_create ( MPI_Comm comm , MPI_Group group , MPI_Comm * newcomm ) ; int MPI_Comm_split ( MPI_Comm comm , int color , int key , MPI_Comm * newcomm ) ; int MPI_Comm_free ( MPI_Comm * comm ) ; int MPI_Comm_test_inter ( MPI_Comm comm , int * flag ) ; int MPI_Comm_remote_size ( MPI_Comm comm , int * size ) ; int MPI_Comm_remote_group ( MPI_Comm comm , MPI_Group * group ) ; int MPI_Intercomm_create ( MPI_Comm local_comm , int local_leader , MPI_Comm peer_comm , int remote_leader , int tag , MPI_Comm * newintercomm ) ; int MPI_Intercomm_merge ( MPI_Comm intercomm , int high , MPI_Comm * newintracomm ) ; int MPI_Keyval_create ( MPI_Copy_function * copy_fn , MPI_Delete_function * delete_fn , int * keyval , void * extra_state ) ; int MPI_Keyval_free ( int * keyval ) ; int MPI_Attr_put ( MPI_Comm comm , int keyval , void * attribute_val ) ; int MPI_Attr_get ( MPI_Comm comm , int keyval , void * attribute_val , int * flag ) ; int MPI_Attr_delete ( MPI_Comm comm , int keyval ) ; int MPI_Topo_test ( MPI_Comm comm , int * status ) ; int MPI_Cart_create ( MPI_Comm comm_old , int ndims , const int dims [ ] , const int periods [ ] , int reorder , MPI_Comm * comm_cart ) ; int MPI_Dims_create ( int nnodes , int ndims , int dims [ ] ) ; int MPI_Graph_create ( MPI_Comm comm_old , int nnodes , const int indx [ ] , const int edges [ ] , int reorder , MPI_Comm * comm_graph ) ; int MPI_Graphdims_get ( MPI_Comm comm , int * nnodes , int * nedges ) ; int MPI_Graph_get ( MPI_Comm comm , int maxindex , int maxedges , int indx [ ] , int edges [ ] ) ; int MPI_Cartdim_get ( MPI_Comm comm , int * ndims ) ; int MPI_Cart_get ( MPI_Comm comm , int maxdims , int dims [ ] , int periods [ ] , int coords [ ] ) ; int MPI_Cart_rank ( MPI_Comm comm , const int coords [ ] , int * rank ) ; int MPI_Cart_coords ( MPI_Comm comm , int rank , int maxdims , int coords [ ] ) ; int MPI_Graph_neighbors_count ( MPI_Comm comm , int rank , int * nneighbors ) ; int MPI_Graph_neighbors ( MPI_Comm comm , int rank , int maxneighbors , int neighbors [ ] ) ; int MPI_Cart_shift ( MPI_Comm comm , int direction , int disp , int * rank_source , int * rank_dest ) ; int MPI_Cart_sub ( MPI_Comm comm , const int remain_dims [ ] , MPI_Comm * newcomm ) ; int MPI_Cart_map ( MPI_Comm comm , int ndims , const int dims [ ] , const int periods [ ] , int * newrank ) ; int MPI_Graph_map ( MPI_Comm comm , int nnodes , const int indx [ ] , const int edges [ ] , int * newrank ) ; int MPI_Get_processor_name ( char * name , int * resultlen ) ; int MPI_Get_version ( int * version , int * subversion ) ; int MPI_Get_library_version ( char * version , int * resultlen ) ; int MPI_Errhandler_create ( MPI_Handler_function * function , MPI_Errhandler * errhandler ) ; int MPI_Errhandler_set ( MPI_Comm comm , MPI_Errhandler errhandler ) ; int MPI_Errhandler_get ( MPI_Comm comm , MPI_Errhandler * errhandler ) ; int MPI_Errhandler_free ( MPI_Errhandler * errhandler ) ; int MPI_Error_string ( int errorcode , char * string , int * resultlen ) ; int MPI_Error_class ( int errorcode , int * errorclass ) ; double MPI_Wtime ( void ) ; double MPI_Wtick ( void ) ; int MPI_Init ( int * argc , char * * * argv ) ; int MPI_Finalize ( void ) ; int MPI_Initialized ( int * flag ) ; int MPI_Abort ( MPI_Comm comm , int errorcode ) ; # 1085 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Pcontrol ( const int level , ... ) ; int MPIR_Dup_fn ( MPI_Comm oldcomm , int keyval , void * extra_state , void * attribute_val_in , void * attribute_val_out , int * flag ) ; # 1090 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Close_port ( const char * port_name ) ; int MPI_Comm_accept ( const char * port_name , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * newcomm ) ; int MPI_Comm_connect ( const char * port_name , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * newcomm ) ; int MPI_Comm_disconnect ( MPI_Comm * comm ) ; int MPI_Comm_get_parent ( MPI_Comm * parent ) ; int MPI_Comm_join ( int fd , MPI_Comm * intercomm ) ; int MPI_Comm_spawn ( const char * command , char * argv [ ] , int maxprocs , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * intercomm , int array_of_errcodes [ ] ) ; int MPI_Comm_spawn_multiple ( int count , char * array_of_commands [ ] , char * * array_of_argv [ ] , const int array_of_maxprocs [ ] , const MPI_Info array_of_info [ ] , int root , MPI_Comm comm , MPI_Comm * intercomm , int array_of_errcodes [ ] ) ; int MPI_Lookup_name ( const char * service_name , MPI_Info info , char * port_name ) ; int MPI_Open_port ( MPI_Info info , char * port_name ) ; int MPI_Publish_name ( const char * service_name , MPI_Info info , const char * port_name ) ; int MPI_Unpublish_name ( const char * service_name , MPI_Info info , const char * port_name ) ; int MPI_Comm_set_info ( MPI_Comm comm , MPI_Info info ) ; int MPI_Comm_get_info ( MPI_Comm comm , MPI_Info * info ) ; # 1111 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win ) ; int MPI_Get ( void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win ) ; int MPI_Put ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win ) ; int MPI_Win_complete ( MPI_Win win ) ; int MPI_Win_create ( void * base , MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , MPI_Win * win ) ; int MPI_Win_fence ( int assert , MPI_Win win ) ; int MPI_Win_free ( MPI_Win * win ) ; int MPI_Win_get_group ( MPI_Win win , MPI_Group * group ) ; int MPI_Win_lock ( int lock_type , int rank , int assert , MPI_Win win ) ; int MPI_Win_post ( MPI_Group group , int assert , MPI_Win win ) ; int MPI_Win_start ( MPI_Group group , int assert , MPI_Win win ) ; int MPI_Win_test ( MPI_Win win , int * flag ) ; int MPI_Win_unlock ( int rank , MPI_Win win ) ; int MPI_Win_wait ( MPI_Win win ) ; # 1135 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Win_allocate ( MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , void * baseptr , MPI_Win * win ) ; int MPI_Win_allocate_shared ( MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , void * baseptr , MPI_Win * win ) ; int MPI_Win_shared_query ( MPI_Win win , int rank , MPI_Aint * size , int * disp_unit , void * baseptr ) ; int MPI_Win_create_dynamic ( MPI_Info info , MPI_Comm comm , MPI_Win * win ) ; int MPI_Win_attach ( MPI_Win win , void * base , MPI_Aint size ) ; int MPI_Win_detach ( MPI_Win win , const void * base ) ; int MPI_Win_get_info ( MPI_Win win , MPI_Info * info_used ) ; int MPI_Win_set_info ( MPI_Win win , MPI_Info info ) ; int MPI_Get_accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , void * result_addr , int result_count , MPI_Datatype result_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win ) ; int MPI_Fetch_and_op ( const void * origin_addr , void * result_addr , MPI_Datatype datatype , int target_rank , MPI_Aint target_disp , MPI_Op op , MPI_Win win ) ; int MPI_Compare_and_swap ( const void * origin_addr , const void * compare_addr , void * result_addr , MPI_Datatype datatype , int target_rank , MPI_Aint target_disp , MPI_Win win ) ; int MPI_Rput ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win , MPI_Request * request ) ; int MPI_Rget ( void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win , MPI_Request * request ) ; int MPI_Raccumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win , MPI_Request * request ) ; int MPI_Rget_accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , void * result_addr , int result_count , MPI_Datatype result_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win , MPI_Request * request ) ; int MPI_Win_lock_all ( int assert , MPI_Win win ) ; int MPI_Win_unlock_all ( MPI_Win win ) ; int MPI_Win_flush ( int rank , MPI_Win win ) ; int MPI_Win_flush_all ( MPI_Win win ) ; int MPI_Win_flush_local ( int rank , MPI_Win win ) ; int MPI_Win_flush_local_all ( MPI_Win win ) ; int MPI_Win_sync ( MPI_Win win ) ; int MPI_Add_error_class ( int * errorclass ) ; int MPI_Add_error_code ( int errorclass , int * errorcode ) ; int MPI_Add_error_string ( int errorcode , const char * string ) ; int MPI_Comm_call_errhandler ( MPI_Comm comm , int errorcode ) ; int MPI_Comm_create_keyval ( MPI_Comm_copy_attr_function * comm_copy_attr_fn , MPI_Comm_delete_attr_function * comm_delete_attr_fn , int * comm_keyval , void * extra_state ) ; int MPI_Comm_delete_attr ( MPI_Comm comm , int comm_keyval ) ; int MPI_Comm_free_keyval ( int * comm_keyval ) ; int MPI_Comm_get_attr ( MPI_Comm comm , int comm_keyval , void * attribute_val , int * flag ) ; int MPI_Comm_get_name ( MPI_Comm comm , char * comm_name , int * resultlen ) ; int MPI_Comm_set_attr ( MPI_Comm comm , int comm_keyval , void * attribute_val ) ; int MPI_Comm_set_name ( MPI_Comm comm , const char * comm_name ) ; int MPI_File_call_errhandler ( MPI_File fh , int errorcode ) ; int MPI_Grequest_complete ( MPI_Request request ) ; int MPI_Grequest_start ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , void * extra_state , MPI_Request * request ) ; int MPI_Init_thread ( int * argc , char * * * argv , int required , int * provided ) ; int MPI_Is_thread_main ( int * flag ) ; int MPI_Query_thread ( int * provided ) ; int MPI_Status_set_cancelled ( MPI_Status * status , int flag ) ; int MPI_Status_set_elements ( MPI_Status * status , MPI_Datatype datatype , int count ) ; int MPI_Type_create_keyval ( MPI_Type_copy_attr_function * type_copy_attr_fn , MPI_Type_delete_attr_function * type_delete_attr_fn , int * type_keyval , void * extra_state ) ; int MPI_Type_delete_attr ( MPI_Datatype datatype , int type_keyval ) ; int MPI_Type_dup ( MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_free_keyval ( int * type_keyval ) ; int MPI_Type_get_attr ( MPI_Datatype datatype , int type_keyval , void * attribute_val , int * flag ) ; int MPI_Type_get_contents ( MPI_Datatype datatype , int max_integers , int max_addresses , int max_datatypes , int array_of_integers [ ] , MPI_Aint array_of_addresses [ ] , MPI_Datatype array_of_datatypes [ ] ) ; int MPI_Type_get_envelope ( MPI_Datatype datatype , int * num_integers , int * num_addresses , int * num_datatypes , int * combiner ) ; int MPI_Type_get_name ( MPI_Datatype datatype , char * type_name , int * resultlen ) ; int MPI_Type_set_attr ( MPI_Datatype datatype , int type_keyval , void * attribute_val ) ; int MPI_Type_set_name ( MPI_Datatype datatype , const char * type_name ) ; int MPI_Type_match_size ( int typeclass , int size , MPI_Datatype * datatype ) ; int MPI_Win_call_errhandler ( MPI_Win win , int errorcode ) ; int MPI_Win_create_keyval ( MPI_Win_copy_attr_function * win_copy_attr_fn , MPI_Win_delete_attr_function * win_delete_attr_fn , int * win_keyval , void * extra_state ) ; int MPI_Win_delete_attr ( MPI_Win win , int win_keyval ) ; int MPI_Win_free_keyval ( int * win_keyval ) ; int MPI_Win_get_attr ( MPI_Win win , int win_keyval , void * attribute_val , int * flag ) ; int MPI_Win_get_name ( MPI_Win win , char * win_name , int * resultlen ) ; int MPI_Win_set_attr ( MPI_Win win , int win_keyval , void * attribute_val ) ; int MPI_Win_set_name ( MPI_Win win , const char * win_name ) ; # 1243 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Alloc_mem ( MPI_Aint size , MPI_Info info , void * baseptr ) ; int MPI_Comm_create_errhandler ( MPI_Comm_errhandler_function * comm_errhandler_fn , MPI_Errhandler * errhandler ) ; int MPI_Comm_get_errhandler ( MPI_Comm comm , MPI_Errhandler * errhandler ) ; int MPI_Comm_set_errhandler ( MPI_Comm comm , MPI_Errhandler errhandler ) ; int MPI_File_create_errhandler ( MPI_File_errhandler_function * file_errhandler_fn , MPI_Errhandler * errhandler ) ; int MPI_File_get_errhandler ( MPI_File file , MPI_Errhandler * errhandler ) ; int MPI_File_set_errhandler ( MPI_File file , MPI_Errhandler errhandler ) ; int MPI_Finalized ( int * flag ) ; int MPI_Free_mem ( void * base ) ; int MPI_Get_address ( const void * location , MPI_Aint * address ) ; int MPI_Info_create ( MPI_Info * info ) ; int MPI_Info_delete ( MPI_Info info , const char * key ) ; int MPI_Info_dup ( MPI_Info info , MPI_Info * newinfo ) ; int MPI_Info_free ( MPI_Info * info ) ; int MPI_Info_get ( MPI_Info info , const char * key , int valuelen , char * value , int * flag ) ; int MPI_Info_get_nkeys ( MPI_Info info , int * nkeys ) ; int MPI_Info_get_nthkey ( MPI_Info info , int n , char * key ) ; int MPI_Info_get_valuelen ( MPI_Info info , const char * key , int * valuelen , int * flag ) ; int MPI_Info_set ( MPI_Info info , const char * key , const char * value ) ; int MPI_Pack_external ( const char datarep [ ] , const void * inbuf , int incount , MPI_Datatype datatype , void * outbuf , MPI_Aint outsize , MPI_Aint * position ) ; int MPI_Pack_external_size ( const char datarep [ ] , int incount , MPI_Datatype datatype , MPI_Aint * size ) ; int MPI_Request_get_status ( MPI_Request request , int * flag , MPI_Status * status ) ; int MPI_Status_c2f ( const MPI_Status * c_status , MPI_Fint * f_status ) ; int MPI_Status_f2c ( const MPI_Fint * f_status , MPI_Status * c_status ) ; int MPI_Type_create_darray ( int size , int rank , int ndims , const int array_of_gsizes [ ] , const int array_of_distribs [ ] , const int array_of_dargs [ ] , const int array_of_psizes [ ] , int order , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_hindexed ( int count , const int array_of_blocklengths [ ] , const MPI_Aint array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_hvector ( int count , int blocklength , MPI_Aint stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_indexed_block ( int count , int blocklength , const int array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_hindexed_block ( int count , int blocklength , const MPI_Aint array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_create_resized ( MPI_Datatype oldtype , MPI_Aint lb , MPI_Aint extent , MPI_Datatype * newtype ) ; int MPI_Type_create_struct ( int count , const int array_of_blocklengths [ ] , const MPI_Aint array_of_displacements [ ] , const MPI_Datatype array_of_types [ ] , MPI_Datatype * newtype ) ; int MPI_Type_create_subarray ( int ndims , const int array_of_sizes [ ] , const int array_of_subsizes [ ] , const int array_of_starts [ ] , int order , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int MPI_Type_get_extent ( MPI_Datatype datatype , MPI_Aint * lb , MPI_Aint * extent ) ; int MPI_Type_get_true_extent ( MPI_Datatype datatype , MPI_Aint * true_lb , MPI_Aint * true_extent ) ; int MPI_Unpack_external ( const char datarep [ ] , const void * inbuf , MPI_Aint insize , MPI_Aint * position , void * outbuf , int outcount , MPI_Datatype datatype ) ; int MPI_Win_create_errhandler ( MPI_Win_errhandler_function * win_errhandler_fn , MPI_Errhandler * errhandler ) ; int MPI_Win_get_errhandler ( MPI_Win win , MPI_Errhandler * errhandler ) ; int MPI_Win_set_errhandler ( MPI_Win win , MPI_Errhandler errhandler ) ; # 1306 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Type_create_f90_integer ( int range , MPI_Datatype * newtype ) ; int MPI_Type_create_f90_real ( int precision , int range , MPI_Datatype * newtype ) ; int MPI_Type_create_f90_complex ( int precision , int range , MPI_Datatype * newtype ) ; # 1311 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Reduce_local ( const void * inbuf , void * inoutbuf , int count , MPI_Datatype datatype , MPI_Op op ) ; int MPI_Op_commutative ( MPI_Op op , int * commute ) ; int MPI_Reduce_scatter_block ( const void * sendbuf , void * recvbuf , int recvcount , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int MPI_Dist_graph_create_adjacent ( MPI_Comm comm_old , int indegree , const int sources [ ] , const int sourceweights [ ] , int outdegree , const int destinations [ ] , const int destweights [ ] , MPI_Info info , int reorder , MPI_Comm * comm_dist_graph ) ; int MPI_Dist_graph_create ( MPI_Comm comm_old , int n , const int sources [ ] , const int degrees [ ] , const int destinations [ ] , const int weights [ ] , MPI_Info info , int reorder , MPI_Comm * comm_dist_graph ) ; int MPI_Dist_graph_neighbors_count ( MPI_Comm comm , int * indegree , int * outdegree , int * weighted ) ; int MPI_Dist_graph_neighbors ( MPI_Comm comm , int maxindegree , int sources [ ] , int sourceweights [ ] , int maxoutdegree , int destinations [ ] , int destweights [ ] ) ; # 1330 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Improbe ( int source , int tag , MPI_Comm comm , int * flag , MPI_Message * message , MPI_Status * status ) ; int MPI_Imrecv ( void * buf , int count , MPI_Datatype datatype , MPI_Message * message , MPI_Request * request ) ; int MPI_Mprobe ( int source , int tag , MPI_Comm comm , MPI_Message * message , MPI_Status * status ) ; int MPI_Mrecv ( void * buf , int count , MPI_Datatype datatype , MPI_Message * message , MPI_Status * status ) ; # 1339 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Comm_idup ( MPI_Comm comm , MPI_Comm * newcomm , MPI_Request * request ) ; int MPI_Ibarrier ( MPI_Comm comm , MPI_Request * request ) ; int MPI_Ibcast ( void * buffer , int count , MPI_Datatype datatype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Igather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Igatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iscatter ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iscatterv ( const void * sendbuf , const int sendcounts [ ] , const int displs [ ] , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iallgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iallgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ialltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ialltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ialltoallw ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ireduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , int root , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iallreduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ireduce_scatter ( const void * sendbuf , void * recvbuf , const int recvcounts [ ] , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ireduce_scatter_block ( const void * sendbuf , void * recvbuf , int recvcount , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int MPI_Iexscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; # 1400 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Ineighbor_allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ineighbor_allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ineighbor_alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ineighbor_alltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int MPI_Ineighbor_alltoallw ( const void * sendbuf , const int sendcounts [ ] , const MPI_Aint sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const MPI_Aint rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm , MPI_Request * request ) ; int MPI_Neighbor_allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Neighbor_allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Neighbor_alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Neighbor_alltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm ) ; int MPI_Neighbor_alltoallw ( const void * sendbuf , const int sendcounts [ ] , const MPI_Aint sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const MPI_Aint rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm ) ; # 1448 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Comm_split_type ( MPI_Comm comm , int split_type , int key , MPI_Info info , MPI_Comm * newcomm ) ; # 1451 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Get_elements_x ( const MPI_Status * status , MPI_Datatype datatype , MPI_Count * count ) ; int MPI_Status_set_elements_x ( MPI_Status * status , MPI_Datatype datatype , MPI_Count count ) ; int MPI_Type_get_extent_x ( MPI_Datatype datatype , MPI_Count * lb , MPI_Count * extent ) ; int MPI_Type_get_true_extent_x ( MPI_Datatype datatype , MPI_Count * lb , MPI_Count * extent ) ; int MPI_Type_size_x ( MPI_Datatype datatype , MPI_Count * size ) ; # 1458 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_Comm_create_group ( MPI_Comm comm , MPI_Group group , int tag , MPI_Comm * newcomm ) ; # 1462 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPIX_Comm_group_failed ( MPI_Comm comm , MPI_Group * failed_group ) ; int MPIX_Comm_remote_group_failed ( MPI_Comm comm , MPI_Group * failed_group ) ; int MPIX_Comm_reenable_anysource ( MPI_Comm comm , MPI_Group * failed_group ) ; # 1469 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 1471 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int MPI_T_init_thread ( int required , int * provided ) ; int MPI_T_finalize ( void ) ; int MPI_T_enum_get_info ( MPI_T_enum enumtype , int * num , char * name , int * name_len ) ; int MPI_T_enum_get_item ( MPI_T_enum enumtype , int indx , int * value , char * name , int * name_len ) ; int MPI_T_cvar_get_num ( int * num_cvar ) ; int MPI_T_cvar_get_info ( int cvar_index , char * name , int * name_len , int * verbosity , MPI_Datatype * datatype , MPI_T_enum * enumtype , char * desc , int * desc_len , int * binding , int * scope ) ; int MPI_T_cvar_handle_alloc ( int cvar_index , void * obj_handle , MPI_T_cvar_handle * handle , int * count ) ; int MPI_T_cvar_handle_free ( MPI_T_cvar_handle * handle ) ; int MPI_T_cvar_read ( MPI_T_cvar_handle handle , void * buf ) ; int MPI_T_cvar_write ( MPI_T_cvar_handle handle , void * buf ) ; int MPI_T_pvar_get_num ( int * num_pvar ) ; int MPI_T_pvar_get_info ( int pvar_index , char * name , int * name_len , int * verbosity , int * var_class , MPI_Datatype * datatype , MPI_T_enum * enumtype , char * desc , int * desc_len , int * binding , int * readonly , int * continuous , int * atomic ) ; int MPI_T_pvar_session_create ( MPI_T_pvar_session * session ) ; int MPI_T_pvar_session_free ( MPI_T_pvar_session * session ) ; int MPI_T_pvar_handle_alloc ( MPI_T_pvar_session session , int pvar_index , void * obj_handle , MPI_T_pvar_handle * handle , int * count ) ; int MPI_T_pvar_handle_free ( MPI_T_pvar_session session , MPI_T_pvar_handle * handle ) ; int MPI_T_pvar_start ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int MPI_T_pvar_stop ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int MPI_T_pvar_read ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int MPI_T_pvar_write ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int MPI_T_pvar_reset ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int MPI_T_pvar_readreset ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int MPI_T_category_get_num ( int * num_cat ) ; int MPI_T_category_get_info ( int cat_index , char * name , int * name_len , char * desc , int * desc_len , int * num_cvars , int * num_pvars , int * num_categories ) ; int MPI_T_category_get_cvars ( int cat_index , int len , int indices [ ] ) ; int MPI_T_category_get_pvars ( int cat_index , int len , int indices [ ] ) ; int MPI_T_category_get_categories ( int cat_index , int len , int indices [ ] ) ; int MPI_T_category_changed ( int * stamp ) ; # 1513 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 1515 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Send ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int PMPI_Recv ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Status * status ) ; int PMPI_Get_count ( const MPI_Status * status , MPI_Datatype datatype , int * count ) ; int PMPI_Bsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int PMPI_Ssend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int PMPI_Rsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm ) ; int PMPI_Buffer_attach ( void * buffer , int size ) ; int PMPI_Buffer_detach ( void * buffer_addr , int * size ) ; int PMPI_Isend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ibsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Issend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Irsend ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Irecv ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Wait ( MPI_Request * request , MPI_Status * status ) ; int PMPI_Test ( MPI_Request * request , int * flag , MPI_Status * status ) ; int PMPI_Request_free ( MPI_Request * request ) ; int PMPI_Waitany ( int count , MPI_Request array_of_requests [ ] , int * indx , MPI_Status * status ) ; int PMPI_Testany ( int count , MPI_Request array_of_requests [ ] , int * indx , int * flag , MPI_Status * status ) ; int PMPI_Waitall ( int count , MPI_Request array_of_requests [ ] , MPI_Status array_of_statuses [ ] ) ; int PMPI_Testall ( int count , MPI_Request array_of_requests [ ] , int * flag , MPI_Status array_of_statuses [ ] ) ; int PMPI_Waitsome ( int incount , MPI_Request array_of_requests [ ] , int * outcount , int array_of_indices [ ] , MPI_Status array_of_statuses [ ] ) ; int PMPI_Testsome ( int incount , MPI_Request array_of_requests [ ] , int * outcount , int array_of_indices [ ] , MPI_Status array_of_statuses [ ] ) ; int PMPI_Iprobe ( int source , int tag , MPI_Comm comm , int * flag , MPI_Status * status ) ; int PMPI_Probe ( int source , int tag , MPI_Comm comm , MPI_Status * status ) ; int PMPI_Cancel ( MPI_Request * request ) ; int PMPI_Test_cancelled ( const MPI_Status * status , int * flag ) ; int PMPI_Send_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Bsend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ssend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Rsend_init ( const void * buf , int count , MPI_Datatype datatype , int dest , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Recv_init ( void * buf , int count , MPI_Datatype datatype , int source , int tag , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Start ( MPI_Request * request ) ; int PMPI_Startall ( int count , MPI_Request array_of_requests [ ] ) ; int PMPI_Sendrecv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , int dest , int sendtag , void * recvbuf , int recvcount , MPI_Datatype recvtype , int source , int recvtag , MPI_Comm comm , MPI_Status * status ) ; int PMPI_Sendrecv_replace ( void * buf , int count , MPI_Datatype datatype , int dest , int sendtag , int source , int recvtag , MPI_Comm comm , MPI_Status * status ) ; int PMPI_Type_contiguous ( int count , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_vector ( int count , int blocklength , int stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_hvector ( int count , int blocklength , MPI_Aint stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_indexed ( int count , const int * array_of_blocklengths , const int * array_of_displacements , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_hindexed ( int count , const int * array_of_blocklengths , const MPI_Aint * array_of_displacements , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_struct ( int count , const int * array_of_blocklengths , const MPI_Aint * array_of_displacements , const MPI_Datatype * array_of_types , MPI_Datatype * newtype ) ; int PMPI_Address ( const void * location , MPI_Aint * address ) ; int PMPI_Type_extent ( MPI_Datatype datatype , MPI_Aint * extent ) ; int PMPI_Type_size ( MPI_Datatype datatype , int * size ) ; int PMPI_Type_lb ( MPI_Datatype datatype , MPI_Aint * displacement ) ; int PMPI_Type_ub ( MPI_Datatype datatype , MPI_Aint * displacement ) ; int PMPI_Type_commit ( MPI_Datatype * datatype ) ; int PMPI_Type_free ( MPI_Datatype * datatype ) ; int PMPI_Get_elements ( const MPI_Status * status , MPI_Datatype datatype , int * count ) ; int PMPI_Pack ( const void * inbuf , int incount , MPI_Datatype datatype , void * outbuf , int outsize , int * position , MPI_Comm comm ) ; int PMPI_Unpack ( const void * inbuf , int insize , int * position , void * outbuf , int outcount , MPI_Datatype datatype , MPI_Comm comm ) ; int PMPI_Pack_size ( int incount , MPI_Datatype datatype , MPI_Comm comm , int * size ) ; int PMPI_Barrier ( MPI_Comm comm ) ; int PMPI_Bcast ( void * buffer , int count , MPI_Datatype datatype , int root , MPI_Comm comm ) ; int PMPI_Gather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int PMPI_Gatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * displs , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int PMPI_Scatter ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int PMPI_Scatterv ( const void * sendbuf , const int * sendcounts , const int * displs , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm ) ; int PMPI_Allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * displs , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Alltoallv ( const void * sendbuf , const int * sendcounts , const int * sdispls , MPI_Datatype sendtype , void * recvbuf , const int * recvcounts , const int * rdispls , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Alltoallw ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm ) ; int PMPI_Exscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Reduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , int root , MPI_Comm comm ) ; int PMPI_Op_create ( MPI_User_function * user_fn , int commute , MPI_Op * op ) ; int PMPI_Op_free ( MPI_Op * op ) ; int PMPI_Allreduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Reduce_scatter ( const void * sendbuf , void * recvbuf , const int recvcounts [ ] , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Scan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Group_size ( MPI_Group group , int * size ) ; int PMPI_Group_rank ( MPI_Group group , int * rank ) ; int PMPI_Group_translate_ranks ( MPI_Group group1 , int n , const int ranks1 [ ] , MPI_Group group2 , int ranks2 [ ] ) ; int PMPI_Group_compare ( MPI_Group group1 , MPI_Group group2 , int * result ) ; int PMPI_Comm_group ( MPI_Comm comm , MPI_Group * group ) ; int PMPI_Group_union ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int PMPI_Group_intersection ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int PMPI_Group_difference ( MPI_Group group1 , MPI_Group group2 , MPI_Group * newgroup ) ; int PMPI_Group_incl ( MPI_Group group , int n , const int ranks [ ] , MPI_Group * newgroup ) ; int PMPI_Group_excl ( MPI_Group group , int n , const int ranks [ ] , MPI_Group * newgroup ) ; int PMPI_Group_range_incl ( MPI_Group group , int n , int ranges [ ] [ 3 ] , MPI_Group * newgroup ) ; int PMPI_Group_range_excl ( MPI_Group group , int n , int ranges [ ] [ 3 ] , MPI_Group * newgroup ) ; int PMPI_Group_free ( MPI_Group * group ) ; int PMPI_Comm_size ( MPI_Comm comm , int * size ) ; int PMPI_Comm_rank ( MPI_Comm comm , int * rank ) ; int PMPI_Comm_compare ( MPI_Comm comm1 , MPI_Comm comm2 , int * result ) ; int PMPI_Comm_dup ( MPI_Comm comm , MPI_Comm * newcomm ) ; int PMPI_Comm_dup_with_info ( MPI_Comm comm , MPI_Info info , MPI_Comm * newcomm ) ; int PMPI_Comm_create ( MPI_Comm comm , MPI_Group group , MPI_Comm * newcomm ) ; int PMPI_Comm_split ( MPI_Comm comm , int color , int key , MPI_Comm * newcomm ) ; int PMPI_Comm_free ( MPI_Comm * comm ) ; int PMPI_Comm_test_inter ( MPI_Comm comm , int * flag ) ; int PMPI_Comm_remote_size ( MPI_Comm comm , int * size ) ; int PMPI_Comm_remote_group ( MPI_Comm comm , MPI_Group * group ) ; int PMPI_Intercomm_create ( MPI_Comm local_comm , int local_leader , MPI_Comm peer_comm , int remote_leader , int tag , MPI_Comm * newintercomm ) ; int PMPI_Intercomm_merge ( MPI_Comm intercomm , int high , MPI_Comm * newintracomm ) ; int PMPI_Keyval_create ( MPI_Copy_function * copy_fn , MPI_Delete_function * delete_fn , int * keyval , void * extra_state ) ; int PMPI_Keyval_free ( int * keyval ) ; int PMPI_Attr_put ( MPI_Comm comm , int keyval , void * attribute_val ) ; int PMPI_Attr_get ( MPI_Comm comm , int keyval , void * attribute_val , int * flag ) ; int PMPI_Attr_delete ( MPI_Comm comm , int keyval ) ; int PMPI_Topo_test ( MPI_Comm comm , int * status ) ; int PMPI_Cart_create ( MPI_Comm comm_old , int ndims , const int dims [ ] , const int periods [ ] , int reorder , MPI_Comm * comm_cart ) ; int PMPI_Dims_create ( int nnodes , int ndims , int dims [ ] ) ; int PMPI_Graph_create ( MPI_Comm comm_old , int nnodes , const int indx [ ] , const int edges [ ] , int reorder , MPI_Comm * comm_graph ) ; int PMPI_Graphdims_get ( MPI_Comm comm , int * nnodes , int * nedges ) ; int PMPI_Graph_get ( MPI_Comm comm , int maxindex , int maxedges , int indx [ ] , int edges [ ] ) ; int PMPI_Cartdim_get ( MPI_Comm comm , int * ndims ) ; int PMPI_Cart_get ( MPI_Comm comm , int maxdims , int dims [ ] , int periods [ ] , int coords [ ] ) ; int PMPI_Cart_rank ( MPI_Comm comm , const int coords [ ] , int * rank ) ; int PMPI_Cart_coords ( MPI_Comm comm , int rank , int maxdims , int coords [ ] ) ; int PMPI_Graph_neighbors_count ( MPI_Comm comm , int rank , int * nneighbors ) ; int PMPI_Graph_neighbors ( MPI_Comm comm , int rank , int maxneighbors , int neighbors [ ] ) ; int PMPI_Cart_shift ( MPI_Comm comm , int direction , int disp , int * rank_source , int * rank_dest ) ; int PMPI_Cart_sub ( MPI_Comm comm , const int remain_dims [ ] , MPI_Comm * newcomm ) ; int PMPI_Cart_map ( MPI_Comm comm , int ndims , const int dims [ ] , const int periods [ ] , int * newrank ) ; int PMPI_Graph_map ( MPI_Comm comm , int nnodes , const int indx [ ] , const int edges [ ] , int * newrank ) ; int PMPI_Get_processor_name ( char * name , int * resultlen ) ; int PMPI_Get_version ( int * version , int * subversion ) ; int PMPI_Get_library_version ( char * version , int * resultlen ) ; int PMPI_Errhandler_create ( MPI_Handler_function * function , MPI_Errhandler * errhandler ) ; int PMPI_Errhandler_set ( MPI_Comm comm , MPI_Errhandler errhandler ) ; int PMPI_Errhandler_get ( MPI_Comm comm , MPI_Errhandler * errhandler ) ; int PMPI_Errhandler_free ( MPI_Errhandler * errhandler ) ; int PMPI_Error_string ( int errorcode , char * string , int * resultlen ) ; int PMPI_Error_class ( int errorcode , int * errorclass ) ; double PMPI_Wtime ( void ) ; double PMPI_Wtick ( void ) ; int PMPI_Init ( int * argc , char * * * argv ) ; int PMPI_Finalize ( void ) ; int PMPI_Initialized ( int * flag ) ; int PMPI_Abort ( MPI_Comm comm , int errorcode ) ; # 1721 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Pcontrol ( const int level , ... ) ; # 1724 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Close_port ( const char * port_name ) ; int PMPI_Comm_accept ( const char * port_name , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * newcomm ) ; int PMPI_Comm_connect ( const char * port_name , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * newcomm ) ; int PMPI_Comm_disconnect ( MPI_Comm * comm ) ; int PMPI_Comm_get_parent ( MPI_Comm * parent ) ; int PMPI_Comm_join ( int fd , MPI_Comm * intercomm ) ; int PMPI_Comm_spawn ( const char * command , char * argv [ ] , int maxprocs , MPI_Info info , int root , MPI_Comm comm , MPI_Comm * intercomm , int array_of_errcodes [ ] ) ; int PMPI_Comm_spawn_multiple ( int count , char * array_of_commands [ ] , char * * array_of_argv [ ] , const int array_of_maxprocs [ ] , const MPI_Info array_of_info [ ] , int root , MPI_Comm comm , MPI_Comm * intercomm , int array_of_errcodes [ ] ) ; int PMPI_Lookup_name ( const char * service_name , MPI_Info info , char * port_name ) ; int PMPI_Open_port ( MPI_Info info , char * port_name ) ; int PMPI_Publish_name ( const char * service_name , MPI_Info info , const char * port_name ) ; int PMPI_Unpublish_name ( const char * service_name , MPI_Info info , const char * port_name ) ; int PMPI_Comm_set_info ( MPI_Comm comm , MPI_Info info ) ; int PMPI_Comm_get_info ( MPI_Comm comm , MPI_Info * info ) ; # 1745 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win ) ; int PMPI_Get ( void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win ) ; int PMPI_Put ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win ) ; int PMPI_Win_complete ( MPI_Win win ) ; int PMPI_Win_create ( void * base , MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , MPI_Win * win ) ; int PMPI_Win_fence ( int assert , MPI_Win win ) ; int PMPI_Win_free ( MPI_Win * win ) ; int PMPI_Win_get_group ( MPI_Win win , MPI_Group * group ) ; int PMPI_Win_lock ( int lock_type , int rank , int assert , MPI_Win win ) ; int PMPI_Win_post ( MPI_Group group , int assert , MPI_Win win ) ; int PMPI_Win_start ( MPI_Group group , int assert , MPI_Win win ) ; int PMPI_Win_test ( MPI_Win win , int * flag ) ; int PMPI_Win_unlock ( int rank , MPI_Win win ) ; int PMPI_Win_wait ( MPI_Win win ) ; # 1769 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Win_allocate ( MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , void * baseptr , MPI_Win * win ) ; int PMPI_Win_allocate_shared ( MPI_Aint size , int disp_unit , MPI_Info info , MPI_Comm comm , void * baseptr , MPI_Win * win ) ; int PMPI_Win_shared_query ( MPI_Win win , int rank , MPI_Aint * size , int * disp_unit , void * baseptr ) ; int PMPI_Win_create_dynamic ( MPI_Info info , MPI_Comm comm , MPI_Win * win ) ; int PMPI_Win_attach ( MPI_Win win , void * base , MPI_Aint size ) ; int PMPI_Win_detach ( MPI_Win win , const void * base ) ; int PMPI_Win_get_info ( MPI_Win win , MPI_Info * info_used ) ; int PMPI_Win_set_info ( MPI_Win win , MPI_Info info ) ; int PMPI_Get_accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , void * result_addr , int result_count , MPI_Datatype result_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win ) ; int PMPI_Fetch_and_op ( const void * origin_addr , void * result_addr , MPI_Datatype datatype , int target_rank , MPI_Aint target_disp , MPI_Op op , MPI_Win win ) ; int PMPI_Compare_and_swap ( const void * origin_addr , const void * compare_addr , void * result_addr , MPI_Datatype datatype , int target_rank , MPI_Aint target_disp , MPI_Win win ) ; int PMPI_Rput ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win , MPI_Request * request ) ; int PMPI_Rget ( void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Win win , MPI_Request * request ) ; int PMPI_Raccumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win , MPI_Request * request ) ; int PMPI_Rget_accumulate ( const void * origin_addr , int origin_count , MPI_Datatype origin_datatype , void * result_addr , int result_count , MPI_Datatype result_datatype , int target_rank , MPI_Aint target_disp , int target_count , MPI_Datatype target_datatype , MPI_Op op , MPI_Win win , MPI_Request * request ) ; int PMPI_Win_lock_all ( int assert , MPI_Win win ) ; int PMPI_Win_unlock_all ( MPI_Win win ) ; int PMPI_Win_flush ( int rank , MPI_Win win ) ; int PMPI_Win_flush_all ( MPI_Win win ) ; int PMPI_Win_flush_local ( int rank , MPI_Win win ) ; int PMPI_Win_flush_local_all ( MPI_Win win ) ; int PMPI_Win_sync ( MPI_Win win ) ; int PMPI_Add_error_class ( int * errorclass ) ; int PMPI_Add_error_code ( int errorclass , int * errorcode ) ; int PMPI_Add_error_string ( int errorcode , const char * string ) ; int PMPI_Comm_call_errhandler ( MPI_Comm comm , int errorcode ) ; int PMPI_Comm_create_keyval ( MPI_Comm_copy_attr_function * comm_copy_attr_fn , MPI_Comm_delete_attr_function * comm_delete_attr_fn , int * comm_keyval , void * extra_state ) ; int PMPI_Comm_delete_attr ( MPI_Comm comm , int comm_keyval ) ; int PMPI_Comm_free_keyval ( int * comm_keyval ) ; int PMPI_Comm_get_attr ( MPI_Comm comm , int comm_keyval , void * attribute_val , int * flag ) ; int PMPI_Comm_get_name ( MPI_Comm comm , char * comm_name , int * resultlen ) ; int PMPI_Comm_set_attr ( MPI_Comm comm , int comm_keyval , void * attribute_val ) ; int PMPI_Comm_set_name ( MPI_Comm comm , const char * comm_name ) ; int PMPI_File_call_errhandler ( MPI_File fh , int errorcode ) ; int PMPI_Grequest_complete ( MPI_Request request ) ; int PMPI_Grequest_start ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , void * extra_state , MPI_Request * request ) ; int PMPI_Init_thread ( int * argc , char * * * argv , int required , int * provided ) ; int PMPI_Is_thread_main ( int * flag ) ; int PMPI_Query_thread ( int * provided ) ; int PMPI_Status_set_cancelled ( MPI_Status * status , int flag ) ; int PMPI_Status_set_elements ( MPI_Status * status , MPI_Datatype datatype , int count ) ; int PMPI_Type_create_keyval ( MPI_Type_copy_attr_function * type_copy_attr_fn , MPI_Type_delete_attr_function * type_delete_attr_fn , int * type_keyval , void * extra_state ) ; int PMPI_Type_delete_attr ( MPI_Datatype datatype , int type_keyval ) ; int PMPI_Type_dup ( MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_free_keyval ( int * type_keyval ) ; int PMPI_Type_get_attr ( MPI_Datatype datatype , int type_keyval , void * attribute_val , int * flag ) ; int PMPI_Type_get_contents ( MPI_Datatype datatype , int max_integers , int max_addresses , int max_datatypes , int array_of_integers [ ] , MPI_Aint array_of_addresses [ ] , MPI_Datatype array_of_datatypes [ ] ) ; int PMPI_Type_get_envelope ( MPI_Datatype datatype , int * num_integers , int * num_addresses , int * num_datatypes , int * combiner ) ; int PMPI_Type_get_name ( MPI_Datatype datatype , char * type_name , int * resultlen ) ; int PMPI_Type_set_attr ( MPI_Datatype datatype , int type_keyval , void * attribute_val ) ; int PMPI_Type_set_name ( MPI_Datatype datatype , const char * type_name ) ; int PMPI_Type_match_size ( int typeclass , int size , MPI_Datatype * datatype ) ; int PMPI_Win_call_errhandler ( MPI_Win win , int errorcode ) ; int PMPI_Win_create_keyval ( MPI_Win_copy_attr_function * win_copy_attr_fn , MPI_Win_delete_attr_function * win_delete_attr_fn , int * win_keyval , void * extra_state ) ; int PMPI_Win_delete_attr ( MPI_Win win , int win_keyval ) ; int PMPI_Win_free_keyval ( int * win_keyval ) ; int PMPI_Win_get_attr ( MPI_Win win , int win_keyval , void * attribute_val , int * flag ) ; int PMPI_Win_get_name ( MPI_Win win , char * win_name , int * resultlen ) ; int PMPI_Win_set_attr ( MPI_Win win , int win_keyval , void * attribute_val ) ; int PMPI_Win_set_name ( MPI_Win win , const char * win_name ) ; # 1877 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Alloc_mem ( MPI_Aint size , MPI_Info info , void * baseptr ) ; int PMPI_Comm_create_errhandler ( MPI_Comm_errhandler_function * comm_errhandler_fn , MPI_Errhandler * errhandler ) ; int PMPI_Comm_get_errhandler ( MPI_Comm comm , MPI_Errhandler * errhandler ) ; int PMPI_Comm_set_errhandler ( MPI_Comm comm , MPI_Errhandler errhandler ) ; int PMPI_File_create_errhandler ( MPI_File_errhandler_function * file_errhandler_fn , MPI_Errhandler * errhandler ) ; int PMPI_File_get_errhandler ( MPI_File file , MPI_Errhandler * errhandler ) ; int PMPI_File_set_errhandler ( MPI_File file , MPI_Errhandler errhandler ) ; int PMPI_Finalized ( int * flag ) ; int PMPI_Free_mem ( void * base ) ; int PMPI_Get_address ( const void * location , MPI_Aint * address ) ; int PMPI_Info_create ( MPI_Info * info ) ; int PMPI_Info_delete ( MPI_Info info , const char * key ) ; int PMPI_Info_dup ( MPI_Info info , MPI_Info * newinfo ) ; int PMPI_Info_free ( MPI_Info * info ) ; int PMPI_Info_get ( MPI_Info info , const char * key , int valuelen , char * value , int * flag ) ; int PMPI_Info_get_nkeys ( MPI_Info info , int * nkeys ) ; int PMPI_Info_get_nthkey ( MPI_Info info , int n , char * key ) ; int PMPI_Info_get_valuelen ( MPI_Info info , const char * key , int * valuelen , int * flag ) ; int PMPI_Info_set ( MPI_Info info , const char * key , const char * value ) ; int PMPI_Pack_external ( const char datarep [ ] , const void * inbuf , int incount , MPI_Datatype datatype , void * outbuf , MPI_Aint outsize , MPI_Aint * position ) ; int PMPI_Pack_external_size ( const char datarep [ ] , int incount , MPI_Datatype datatype , MPI_Aint * size ) ; int PMPI_Request_get_status ( MPI_Request request , int * flag , MPI_Status * status ) ; int PMPI_Status_c2f ( const MPI_Status * c_status , MPI_Fint * f_status ) ; int PMPI_Status_f2c ( const MPI_Fint * f_status , MPI_Status * c_status ) ; int PMPI_Type_create_darray ( int size , int rank , int ndims , const int array_of_gsizes [ ] , const int array_of_distribs [ ] , const int array_of_dargs [ ] , const int array_of_psizes [ ] , int order , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_hindexed ( int count , const int array_of_blocklengths [ ] , const MPI_Aint array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_hvector ( int count , int blocklength , MPI_Aint stride , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_indexed_block ( int count , int blocklength , const int array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_hindexed_block ( int count , int blocklength , const MPI_Aint array_of_displacements [ ] , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_create_resized ( MPI_Datatype oldtype , MPI_Aint lb , MPI_Aint extent , MPI_Datatype * newtype ) ; int PMPI_Type_create_struct ( int count , const int array_of_blocklengths [ ] , const MPI_Aint array_of_displacements [ ] , const MPI_Datatype array_of_types [ ] , MPI_Datatype * newtype ) ; int PMPI_Type_create_subarray ( int ndims , const int array_of_sizes [ ] , const int array_of_subsizes [ ] , const int array_of_starts [ ] , int order , MPI_Datatype oldtype , MPI_Datatype * newtype ) ; int PMPI_Type_get_extent ( MPI_Datatype datatype , MPI_Aint * lb , MPI_Aint * extent ) ; int PMPI_Type_get_true_extent ( MPI_Datatype datatype , MPI_Aint * true_lb , MPI_Aint * true_extent ) ; int PMPI_Unpack_external ( const char datarep [ ] , const void * inbuf , MPI_Aint insize , MPI_Aint * position , void * outbuf , int outcount , MPI_Datatype datatype ) ; int PMPI_Win_create_errhandler ( MPI_Win_errhandler_function * win_errhandler_fn , MPI_Errhandler * errhandler ) ; int PMPI_Win_get_errhandler ( MPI_Win win , MPI_Errhandler * errhandler ) ; int PMPI_Win_set_errhandler ( MPI_Win win , MPI_Errhandler errhandler ) ; # 1940 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Type_create_f90_integer ( int r , MPI_Datatype * newtype ) ; int PMPI_Type_create_f90_real ( int p , int r , MPI_Datatype * newtype ) ; int PMPI_Type_create_f90_complex ( int p , int r , MPI_Datatype * newtype ) ; # 1945 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Reduce_local ( const void * inbuf , void * inoutbuf , int count , MPI_Datatype datatype , MPI_Op op ) ; int PMPI_Op_commutative ( MPI_Op op , int * commute ) ; int PMPI_Reduce_scatter_block ( const void * sendbuf , void * recvbuf , int recvcount , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm ) ; int PMPI_Dist_graph_create_adjacent ( MPI_Comm comm_old , int indegree , const int sources [ ] , const int sourceweights [ ] , int outdegree , const int destinations [ ] , const int destweights [ ] , MPI_Info info , int reorder , MPI_Comm * comm_dist_graph ) ; int PMPI_Dist_graph_create ( MPI_Comm comm_old , int n , const int sources [ ] , const int degrees [ ] , const int destinations [ ] , const int weights [ ] , MPI_Info info , int reorder , MPI_Comm * comm_dist_graph ) ; int PMPI_Dist_graph_neighbors_count ( MPI_Comm comm , int * indegree , int * outdegree , int * weighted ) ; int PMPI_Dist_graph_neighbors ( MPI_Comm comm , int maxindegree , int sources [ ] , int sourceweights [ ] , int maxoutdegree , int destinations [ ] , int destweights [ ] ) ; # 1964 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Improbe ( int source , int tag , MPI_Comm comm , int * flag , MPI_Message * message , MPI_Status * status ) ; int PMPI_Imrecv ( void * buf , int count , MPI_Datatype datatype , MPI_Message * message , MPI_Request * request ) ; int PMPI_Mprobe ( int source , int tag , MPI_Comm comm , MPI_Message * message , MPI_Status * status ) ; int PMPI_Mrecv ( void * buf , int count , MPI_Datatype datatype , MPI_Message * message , MPI_Status * status ) ; # 1973 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Comm_idup ( MPI_Comm comm , MPI_Comm * newcomm , MPI_Request * request ) ; int PMPI_Ibarrier ( MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ibcast ( void * buffer , int count , MPI_Datatype datatype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Igather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Igatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iscatter ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iscatterv ( const void * sendbuf , const int sendcounts [ ] , const int displs [ ] , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iallgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iallgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ialltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ialltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ialltoallw ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ireduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , int root , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iallreduce ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ireduce_scatter ( const void * sendbuf , void * recvbuf , const int recvcounts [ ] , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ireduce_scatter_block ( const void * sendbuf , void * recvbuf , int recvcount , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Iexscan ( const void * sendbuf , void * recvbuf , int count , MPI_Datatype datatype , MPI_Op op , MPI_Comm comm , MPI_Request * request ) ; # 2035 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Ineighbor_allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ineighbor_allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ineighbor_alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ineighbor_alltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Ineighbor_alltoallw ( const void * sendbuf , const int sendcounts [ ] , const MPI_Aint sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const MPI_Aint rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm , MPI_Request * request ) ; int PMPI_Neighbor_allgather ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Neighbor_allgatherv ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int displs [ ] , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Neighbor_alltoall ( const void * sendbuf , int sendcount , MPI_Datatype sendtype , void * recvbuf , int recvcount , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Neighbor_alltoallv ( const void * sendbuf , const int sendcounts [ ] , const int sdispls [ ] , MPI_Datatype sendtype , void * recvbuf , const int recvcounts [ ] , const int rdispls [ ] , MPI_Datatype recvtype , MPI_Comm comm ) ; int PMPI_Neighbor_alltoallw ( const void * sendbuf , const int sendcounts [ ] , const MPI_Aint sdispls [ ] , const MPI_Datatype sendtypes [ ] , void * recvbuf , const int recvcounts [ ] , const MPI_Aint rdispls [ ] , const MPI_Datatype recvtypes [ ] , MPI_Comm comm ) ; # 2084 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Comm_split_type ( MPI_Comm comm , int split_type , int key , MPI_Info info , MPI_Comm * newcomm ) ; # 2087 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Comm_create_group ( MPI_Comm comm , MPI_Group group , int tag , MPI_Comm * newcomm ) ; # 2090 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_Get_elements_x ( const MPI_Status * status , MPI_Datatype datatype , MPI_Count * count ) ; int PMPI_Status_set_elements_x ( MPI_Status * status , MPI_Datatype datatype , MPI_Count count ) ; int PMPI_Type_get_extent_x ( MPI_Datatype datatype , MPI_Count * lb , MPI_Count * extent ) ; int PMPI_Type_get_true_extent_x ( MPI_Datatype datatype , MPI_Count * lb , MPI_Count * extent ) ; int PMPI_Type_size_x ( MPI_Datatype datatype , MPI_Count * size ) ; # 2097 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPIX_Comm_group_failed ( MPI_Comm comm , MPI_Group * failed_group ) ; int PMPIX_Comm_remote_group_failed ( MPI_Comm comm , MPI_Group * failed_group ) ; int PMPIX_Comm_reenable_anysource ( MPI_Comm comm , MPI_Group * failed_group ) ; # 2104 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 2106 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPI_T_init_thread ( int required , int * provided ) ; int PMPI_T_finalize ( void ) ; int PMPI_T_enum_get_info ( MPI_T_enum enumtype , int * num , char * name , int * name_len ) ; int PMPI_T_enum_get_item ( MPI_T_enum enumtype , int indx , int * value , char * name , int * name_len ) ; int PMPI_T_cvar_get_num ( int * num_cvar ) ; int PMPI_T_cvar_get_info ( int cvar_index , char * name , int * name_len , int * verbosity , MPI_Datatype * datatype , MPI_T_enum * enumtype , char * desc , int * desc_len , int * binding , int * scope ) ; int PMPI_T_cvar_handle_alloc ( int cvar_index , void * obj_handle , MPI_T_cvar_handle * handle , int * count ) ; int PMPI_T_cvar_handle_free ( MPI_T_cvar_handle * handle ) ; int PMPI_T_cvar_read ( MPI_T_cvar_handle handle , void * buf ) ; int PMPI_T_cvar_write ( MPI_T_cvar_handle handle , void * buf ) ; int PMPI_T_pvar_get_num ( int * num_pvar ) ; int PMPI_T_pvar_get_info ( int pvar_index , char * name , int * name_len , int * verbosity , int * var_class , MPI_Datatype * datatype , MPI_T_enum * enumtype , char * desc , int * desc_len , int * binding , int * readonly , int * continuous , int * atomic ) ; int PMPI_T_pvar_session_create ( MPI_T_pvar_session * session ) ; int PMPI_T_pvar_session_free ( MPI_T_pvar_session * session ) ; int PMPI_T_pvar_handle_alloc ( MPI_T_pvar_session session , int pvar_index , void * obj_handle , MPI_T_pvar_handle * handle , int * count ) ; int PMPI_T_pvar_handle_free ( MPI_T_pvar_session session , MPI_T_pvar_handle * handle ) ; int PMPI_T_pvar_start ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int PMPI_T_pvar_stop ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int PMPI_T_pvar_read ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int PMPI_T_pvar_write ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int PMPI_T_pvar_reset ( MPI_T_pvar_session session , MPI_T_pvar_handle handle ) ; int PMPI_T_pvar_readreset ( MPI_T_pvar_session session , MPI_T_pvar_handle handle , void * buf ) ; int PMPI_T_category_get_num ( int * num_cat ) ; int PMPI_T_category_get_info ( int cat_index , char * name , int * name_len , char * desc , int * desc_len , int * num_cvars , int * num_pvars , int * num_categories ) ; int PMPI_T_category_get_cvars ( int cat_index , int len , int indices [ ] ) ; int PMPI_T_category_get_pvars ( int cat_index , int len , int indices [ ] ) ; int PMPI_T_category_get_categories ( int cat_index , int len , int indices [ ] ) ; int PMPI_T_category_changed ( int * stamp ) ; # 2145 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 2147 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 1 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 6 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 8 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 1 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 5 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 14 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 21 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 33 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 110 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 113 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 117 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_open ( MPI_Comm comm , const char * filename , int amode , MPI_Info info , MPI_File * fh ) ; int MPI_File_close ( MPI_File * fh ) ; int MPI_File_delete ( const char * filename , MPI_Info info ) ; int MPI_File_set_size ( MPI_File fh , MPI_Offset size ) ; int MPI_File_preallocate ( MPI_File fh , MPI_Offset size ) ; int MPI_File_get_size ( MPI_File fh , MPI_Offset * size ) ; int MPI_File_get_group ( MPI_File fh , MPI_Group * group ) ; int MPI_File_get_amode ( MPI_File fh , int * amode ) ; int MPI_File_set_info ( MPI_File fh , MPI_Info info ) ; int MPI_File_get_info ( MPI_File fh , MPI_Info * info_used ) ; # 130 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_set_view ( MPI_File fh , MPI_Offset disp , MPI_Datatype etype , MPI_Datatype filetype , const char * datarep , MPI_Info info ) ; int MPI_File_get_view ( MPI_File fh , MPI_Offset * disp , MPI_Datatype * etype , MPI_Datatype * filetype , char * datarep ) ; # 136 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_read_at ( MPI_File fh , MPI_Offset offset , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_read_at_all ( MPI_File fh , MPI_Offset offset , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_at ( MPI_File fh , MPI_Offset offset , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_at_all ( MPI_File fh , MPI_Offset offset , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; # 151 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_iread_at ( MPI_File fh , MPI_Offset offset , void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; int MPI_File_iwrite_at ( MPI_File fh , MPI_Offset offset , const void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; # 158 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_read ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_read_all ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_all ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; # 170 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 172 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_iread ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; int MPI_File_iwrite ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; # 177 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_seek ( MPI_File fh , MPI_Offset offset , int whence ) ; int MPI_File_get_position ( MPI_File fh , MPI_Offset * offset ) ; int MPI_File_get_byte_offset ( MPI_File fh , MPI_Offset offset , MPI_Offset * disp ) ; # 181 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_read_shared ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_shared ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_iread_shared ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; int MPI_File_iwrite_shared ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Request * request ) ; int MPI_File_read_ordered ( MPI_File fh , void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_write_ordered ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype , MPI_Status * status ) ; int MPI_File_seek_shared ( MPI_File fh , MPI_Offset offset , int whence ) ; int MPI_File_get_position_shared ( MPI_File fh , MPI_Offset * offset ) ; # 197 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_read_at_all_begin ( MPI_File fh , MPI_Offset offset , void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_read_at_all_end ( MPI_File fh , void * buf , MPI_Status * status ) ; int MPI_File_write_at_all_begin ( MPI_File fh , MPI_Offset offset , const void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_write_at_all_end ( MPI_File fh , const void * buf , MPI_Status * status ) ; int MPI_File_read_all_begin ( MPI_File fh , void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_read_all_end ( MPI_File fh , void * buf , MPI_Status * status ) ; int MPI_File_write_all_begin ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_write_all_end ( MPI_File fh , const void * buf , MPI_Status * status ) ; int MPI_File_read_ordered_begin ( MPI_File fh , void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_read_ordered_end ( MPI_File fh , void * buf , MPI_Status * status ) ; int MPI_File_write_ordered_begin ( MPI_File fh , const void * buf , int count , MPI_Datatype datatype ) ; int MPI_File_write_ordered_end ( MPI_File fh , const void * buf , MPI_Status * status ) ; # 217 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_get_type_extent ( MPI_File fh , MPI_Datatype datatype , MPI_Aint * extent ) ; # 220 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_Register_datarep ( const char * datarep , MPI_Datarep_conversion_function * read_conversion_fn , MPI_Datarep_conversion_function * write_conversion_fn , MPI_Datarep_extent_function * dtype_file_extent_fn , void * extra_state ) ; # 225 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int MPI_File_set_atomicity ( MPI_File fh , int flag ) ; int MPI_File_get_atomicity ( MPI_File fh , int * flag ) ; int MPI_File_sync ( MPI_File fh ) ; # 230 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 236 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 253 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 263 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" MPI_File MPI_File_f2c ( MPI_Fint file ) ; MPI_Fint MPI_File_c2f ( MPI_File file ) ; # 289 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 321 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 324 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_open ( MPI_Comm , const char * , int , MPI_Info , MPI_File * ) ; int PMPI_File_close ( MPI_File * ) ; int PMPI_File_delete ( const char * , MPI_Info ) ; int PMPI_File_set_size ( MPI_File , MPI_Offset ) ; int PMPI_File_preallocate ( MPI_File , MPI_Offset ) ; int PMPI_File_get_size ( MPI_File , MPI_Offset * ) ; int PMPI_File_get_group ( MPI_File , MPI_Group * ) ; int PMPI_File_get_amode ( MPI_File , int * ) ; int PMPI_File_set_info ( MPI_File , MPI_Info ) ; int PMPI_File_get_info ( MPI_File , MPI_Info * ) ; # 336 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_set_view ( MPI_File , MPI_Offset , MPI_Datatype , MPI_Datatype , const char * , MPI_Info ) ; int PMPI_File_get_view ( MPI_File , MPI_Offset * , MPI_Datatype * , MPI_Datatype * , char * ) ; # 342 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_read_at ( MPI_File , MPI_Offset , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_read_at_all ( MPI_File , MPI_Offset , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_at ( MPI_File , MPI_Offset , const void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_at_all ( MPI_File , MPI_Offset , const void * , int , MPI_Datatype , MPI_Status * ) ; # 358 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 360 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_iread_at ( MPI_File , MPI_Offset , void * , int , MPI_Datatype , MPI_Request * ) ; int PMPI_File_iwrite_at ( MPI_File , MPI_Offset , const void * , int , MPI_Datatype , MPI_Request * ) ; # 367 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_read ( MPI_File , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_read_all ( MPI_File , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write ( MPI_File , const void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_all ( MPI_File , const void * , int , MPI_Datatype , MPI_Status * ) ; # 379 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 381 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_iread ( MPI_File , void * , int , MPI_Datatype , MPI_Request * ) ; int PMPI_File_iwrite ( MPI_File , const void * , int , MPI_Datatype , MPI_Request * ) ; # 386 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_seek ( MPI_File , MPI_Offset , int ) ; int PMPI_File_get_position ( MPI_File , MPI_Offset * ) ; int PMPI_File_get_byte_offset ( MPI_File , MPI_Offset , MPI_Offset * ) ; # 390 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_read_shared ( MPI_File , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_shared ( MPI_File , const void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_iread_shared ( MPI_File , void * , int , MPI_Datatype , MPI_Request * ) ; int PMPI_File_iwrite_shared ( MPI_File , const void * , int , MPI_Datatype , MPI_Request * ) ; int PMPI_File_read_ordered ( MPI_File , void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_write_ordered ( MPI_File , const void * , int , MPI_Datatype , MPI_Status * ) ; int PMPI_File_seek_shared ( MPI_File , MPI_Offset , int ) ; int PMPI_File_get_position_shared ( MPI_File , MPI_Offset * ) ; # 408 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_read_at_all_begin ( MPI_File , MPI_Offset , void * , int , MPI_Datatype ) ; int PMPI_File_read_at_all_end ( MPI_File , void * , MPI_Status * ) ; int PMPI_File_write_at_all_begin ( MPI_File , MPI_Offset , const void * , int , MPI_Datatype ) ; int PMPI_File_write_at_all_end ( MPI_File , const void * , MPI_Status * ) ; int PMPI_File_read_all_begin ( MPI_File , void * , int , MPI_Datatype ) ; int PMPI_File_read_all_end ( MPI_File , void * , MPI_Status * ) ; int PMPI_File_write_all_begin ( MPI_File , const void * , int , MPI_Datatype ) ; int PMPI_File_write_all_end ( MPI_File , const void * , MPI_Status * ) ; int PMPI_File_read_ordered_begin ( MPI_File , void * , int , MPI_Datatype ) ; int PMPI_File_read_ordered_end ( MPI_File , void * , MPI_Status * ) ; int PMPI_File_write_ordered_begin ( MPI_File , const void * , int , MPI_Datatype ) ; int PMPI_File_write_ordered_end ( MPI_File , const void * , MPI_Status * ) ; # 430 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_get_type_extent ( MPI_File , MPI_Datatype , MPI_Aint * ) ; # 433 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_Register_datarep ( const char * , MPI_Datarep_conversion_function * , MPI_Datarep_conversion_function * , MPI_Datarep_extent_function * , void * ) ; # 440 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" int PMPI_File_set_atomicity ( MPI_File , int ) ; int PMPI_File_get_atomicity ( MPI_File , int * ) ; int PMPI_File_sync ( MPI_File ) ; # 445 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 462 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" MPI_File PMPI_File_f2c ( MPI_Fint ) ; MPI_Fint PMPI_File_c2f ( MPI_File ) ; # 482 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpio.h" # 2160 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" # 2180 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" typedef int MPIX_Grequest_class ; int MPIX_Grequest_class_create ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , MPIX_Grequest_poll_function * poll_fn , MPIX_Grequest_wait_function * wait_fn , MPIX_Grequest_class * greq_class ) ; int MPIX_Grequest_class_allocate ( MPIX_Grequest_class greq_class , void * extra_state , MPI_Request * request ) ; int MPIX_Grequest_start ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , MPIX_Grequest_poll_function * poll_fn , MPIX_Grequest_wait_function * wait_fn , void * extra_state , MPI_Request * request ) ; # 2197 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" struct mpixi_mutex_s ; typedef struct mpixi_mutex_s * MPIX_Mutex ; int MPIX_Mutex_create ( int count , MPI_Comm comm , MPIX_Mutex * hdl ) ; int MPIX_Mutex_free ( MPIX_Mutex * hdl ) ; int MPIX_Mutex_lock ( MPIX_Mutex hdl , int mutex , int proc ) ; int MPIX_Mutex_unlock ( MPIX_Mutex hdl , int mutex , int proc ) ; # 2207 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPIX_Grequest_class_create ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , MPIX_Grequest_poll_function * poll_fn , MPIX_Grequest_wait_function * wait_fn , MPIX_Grequest_class * greq_class ) ; int PMPIX_Grequest_class_allocate ( MPIX_Grequest_class greq_class , void * extra_state , MPI_Request * request ) ; int PMPIX_Grequest_start ( MPI_Grequest_query_function * query_fn , MPI_Grequest_free_function * free_fn , MPI_Grequest_cancel_function * cancel_fn , MPIX_Grequest_poll_function * poll_fn , MPIX_Grequest_wait_function * wait_fn , void * extra_state , MPI_Request * request ) ; # 2223 "/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include/mpi.h" int PMPIX_Mutex_create ( int count , MPI_Comm comm , MPIX_Mutex * hdl ) ; int PMPIX_Mutex_free ( MPIX_Mutex * hdl ) ; int PMPIX_Mutex_lock ( MPIX_Mutex hdl , int mutex , int proc ) ; int PMPIX_Mutex_unlock ( MPIX_Mutex hdl , int mutex , int proc ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c" # 4 "/tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c" int mpich_ver = 30100300 ; Defined "HAVE_MPICH_NUMVERSION" to "30100300" Defined "HAVE_MPI_ALLTOALLW" to "1" Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast -I/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include -I/opt/cray/hdf5-parallel/1.8.13/PGI/141/include -I/opt/acml/5.3.1/pgi64_fma4_mp/include -I/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include -I/opt/cray/libsci/13.0.1/PGI/141/interlagos/include -I/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include -I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include -I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include -I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include -I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include -I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include -I/opt/cray-hss-devel/7.2.0/include /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast -I/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include -I/opt/cray/hdf5-parallel/1.8.13/PGI/141/include -I/opt/acml/5.3.1/pgi64_fma4_mp/include -I/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include -I/opt/cray/libsci/13.0.1/PGI/141/interlagos/include -I/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include -I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include -I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include -I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include -I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include -I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include -I/opt/cray-hss-devel/7.2.0/include /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:130) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:130) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/MPI.py:143) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:143) Checking for mpiexec Pushing language C Popping language C Checking for program bin/mpiexec...not found Checking for program bin/mpirun...not found Checking for program bin/mprun...not found Checking for program bin/mpiexec...not found Checking for program bin/mpirun...not found Checking for program bin/mprun...not found Checking for program mpd/bin/mpiexec...not found Checking for program mpd/bin/mpirun...not found Checking for program mpd/bin/mprun...not found Checking for program mpd/bin/mpiexec...not found Checking for program mpd/bin/mpirun...not found Checking for program mpd/bin/mprun...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/bin/mpiexec...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/bin/mpirun...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/bin/mprun...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/bin/mpiexec...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/bin/mpirun...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/bin/mprun...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/mpd/bin/mpiexec...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/mpd/bin/mpirun...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/mpd/bin/mprun...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/mpd/bin/mpiexec...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/mpd/bin/mpirun...not found Checking for program /opt/cray/netcdf-hdf5parallel/4.3.2/PGI/mpd/bin/mprun...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/141/bin/mpiexec...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/141/bin/mpirun...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/141/bin/mprun...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/141/bin/mpiexec...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/141/bin/mpirun...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/141/bin/mprun...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/mpd/bin/mpiexec...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/mpd/bin/mpirun...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/mpd/bin/mprun...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/mpd/bin/mpiexec...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/mpd/bin/mpirun...not found Checking for program /opt/cray/hdf5-parallel/1.8.13/PGI/mpd/bin/mprun...not found Checking for program /opt/acml/5.3.1/pgi64_fma4_mp/bin/mpiexec...not found Checking for program /opt/acml/5.3.1/pgi64_fma4_mp/bin/mpirun...not found Checking for program /opt/acml/5.3.1/pgi64_fma4_mp/bin/mprun...not found Checking for program /opt/acml/5.3.1/pgi64_fma4_mp/bin/mpiexec...not found Checking for program /opt/acml/5.3.1/pgi64_fma4_mp/bin/mpirun...not found Checking for program /opt/acml/5.3.1/pgi64_fma4_mp/bin/mprun...not found Checking for program /opt/acml/5.3.1/mpd/bin/mpiexec...not found Checking for program /opt/acml/5.3.1/mpd/bin/mpirun...not found Checking for program /opt/acml/5.3.1/mpd/bin/mprun...not found Checking for program /opt/acml/5.3.1/mpd/bin/mpiexec...not found Checking for program /opt/acml/5.3.1/mpd/bin/mpirun...not found Checking for program /opt/acml/5.3.1/mpd/bin/mprun...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/bin/mpiexec...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/bin/mpirun...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/bin/mprun...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/bin/mpiexec...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/bin/mpirun...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/bin/mprun...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/mpd/bin/mpiexec...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/mpd/bin/mpirun...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/mpd/bin/mprun...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/mpd/bin/mpiexec...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/mpd/bin/mpirun...not found Checking for program /opt/cray/mpt/7.0.4/gni/mpich2-pgi/mpd/bin/mprun...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/interlagos/bin/mpiexec...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/interlagos/bin/mpirun...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/interlagos/bin/mprun...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/interlagos/bin/mpiexec...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/interlagos/bin/mpirun...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/interlagos/bin/mprun...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/mpd/bin/mpiexec...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/mpd/bin/mpirun...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/mpd/bin/mprun...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/mpd/bin/mpiexec...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/mpd/bin/mpirun...not found Checking for program /opt/cray/libsci/13.0.1/PGI/141/mpd/bin/mprun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mpiexec...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mpirun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mprun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mpiexec...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mpirun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mprun...not found Checking for program /opt/cray/alps/mpd/bin/mpiexec...not found Checking for program /opt/cray/alps/mpd/bin/mpirun...not found Checking for program /opt/cray/alps/mpd/bin/mprun...not found Checking for program /opt/cray/alps/mpd/bin/mpiexec...not found Checking for program /opt/cray/alps/mpd/bin/mpirun...not found Checking for program /opt/cray/alps/mpd/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/mpd/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/mpd/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/mpd/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/mpd/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/mpd/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/mpd/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/mpd/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/mpd/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/mpd/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/mpd/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/mpd/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/mpd/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/mpd/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/mpd/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/mpd/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/mpd/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/mpd/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/mpd/bin/mprun...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mpiexec...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mpirun...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mprun...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mpiexec...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mpirun...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mprun...not found Checking for program /opt/cray/rca/mpd/bin/mpiexec...not found Checking for program /opt/cray/rca/mpd/bin/mpirun...not found Checking for program /opt/cray/rca/mpd/bin/mprun...not found Checking for program /opt/cray/rca/mpd/bin/mpiexec...not found Checking for program /opt/cray/rca/mpd/bin/mpirun...not found Checking for program /opt/cray/rca/mpd/bin/mprun...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mpiexec...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mpirun...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mprun...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mpiexec...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mpirun...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mprun...not found Checking for program /opt/cray/xpmem/mpd/bin/mpiexec...not found Checking for program /opt/cray/xpmem/mpd/bin/mpirun...not found Checking for program /opt/cray/xpmem/mpd/bin/mprun...not found Checking for program /opt/cray/xpmem/mpd/bin/mpiexec...not found Checking for program /opt/cray/xpmem/mpd/bin/mpirun...not found Checking for program /opt/cray/xpmem/mpd/bin/mprun...not found Checking for program /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/bin/mpiexec...not found Checking for program /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/bin/mpirun...not found Checking for program /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/bin/mprun...not found Checking for program /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/bin/mpiexec...not found Checking for program /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/bin/mpirun...not found Checking for program /opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/bin/mprun...not found Checking for program /opt/cray/gni-headers/mpd/bin/mpiexec...not found Checking for program /opt/cray/gni-headers/mpd/bin/mpirun...not found Checking for program /opt/cray/gni-headers/mpd/bin/mprun...not found Checking for program /opt/cray/gni-headers/mpd/bin/mpiexec...not found Checking for program /opt/cray/gni-headers/mpd/bin/mpirun...not found Checking for program /opt/cray/gni-headers/mpd/bin/mprun...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mpiexec...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mpirun...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mprun...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mpiexec...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mpirun...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mprun...not found Checking for program /opt/cray/pmi/mpd/bin/mpiexec...not found Checking for program /opt/cray/pmi/mpd/bin/mpirun...not found Checking for program /opt/cray/pmi/mpd/bin/mprun...not found Checking for program /opt/cray/pmi/mpd/bin/mpiexec...not found Checking for program /opt/cray/pmi/mpd/bin/mpirun...not found Checking for program /opt/cray/pmi/mpd/bin/mprun...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mpiexec...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mpirun...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mprun...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mpiexec...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mpirun...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mprun...not found Checking for program /opt/cray/ugni/mpd/bin/mpiexec...not found Checking for program /opt/cray/ugni/mpd/bin/mpirun...not found Checking for program /opt/cray/ugni/mpd/bin/mprun...not found Checking for program /opt/cray/ugni/mpd/bin/mpiexec...not found Checking for program /opt/cray/ugni/mpd/bin/mpirun...not found Checking for program /opt/cray/ugni/mpd/bin/mprun...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mpiexec...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mpirun...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mprun...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mpiexec...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mpirun...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mprun...not found Checking for program /opt/cray/udreg/mpd/bin/mpiexec...not found Checking for program /opt/cray/udreg/mpd/bin/mpirun...not found Checking for program /opt/cray/udreg/mpd/bin/mprun...not found Checking for program /opt/cray/udreg/mpd/bin/mpiexec...not found Checking for program /opt/cray/udreg/mpd/bin/mpirun...not found Checking for program /opt/cray/udreg/mpd/bin/mprun...not found Checking for program /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/bin/mpiexec...not found Checking for program /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/bin/mpirun...not found Checking for program /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/bin/mprun...not found Checking for program /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/bin/mpiexec...not found Checking for program /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/bin/mpirun...not found Checking for program /opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/bin/mprun...not found Checking for program /opt/cray/wlm_detect/mpd/bin/mpiexec...not found Checking for program /opt/cray/wlm_detect/mpd/bin/mpirun...not found Checking for program /opt/cray/wlm_detect/mpd/bin/mprun...not found Checking for program /opt/cray/wlm_detect/mpd/bin/mpiexec...not found Checking for program /opt/cray/wlm_detect/mpd/bin/mpirun...not found Checking for program /opt/cray/wlm_detect/mpd/bin/mprun...not found Checking for program /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/bin/mpiexec...not found Checking for program /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/bin/mpirun...not found Checking for program /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/bin/mprun...not found Checking for program /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/bin/mpiexec...not found Checking for program /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/bin/mpirun...not found Checking for program /opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/bin/mprun...not found Checking for program /opt/cray/krca/mpd/bin/mpiexec...not found Checking for program /opt/cray/krca/mpd/bin/mpirun...not found Checking for program /opt/cray/krca/mpd/bin/mprun...not found Checking for program /opt/cray/krca/mpd/bin/mpiexec...not found Checking for program /opt/cray/krca/mpd/bin/mpirun...not found Checking for program /opt/cray/krca/mpd/bin/mprun...not found Checking for program /opt/cray-hss-devel/7.2.0/bin/mpiexec...not found Checking for program /opt/cray-hss-devel/7.2.0/bin/mpirun...not found Checking for program /opt/cray-hss-devel/7.2.0/bin/mprun...not found Checking for program /opt/cray-hss-devel/7.2.0/bin/mpiexec...not found Checking for program /opt/cray-hss-devel/7.2.0/bin/mpirun...not found Checking for program /opt/cray-hss-devel/7.2.0/bin/mprun...not found Checking for program /opt/cray-hss-devel/mpd/bin/mpiexec...not found Checking for program /opt/cray-hss-devel/mpd/bin/mpirun...not found Checking for program /opt/cray-hss-devel/mpd/bin/mprun...not found Checking for program /opt/cray-hss-devel/mpd/bin/mpiexec...not found Checking for program /opt/cray-hss-devel/mpd/bin/mpirun...not found Checking for program /opt/cray-hss-devel/mpd/bin/mprun...not found Checking for program /ccs/home/adams/git-fat/mpiexec...not found Checking for program /ccs/home/adams/git-fat/mpirun...not found Checking for program /ccs/home/adams/git-fat/mprun...not found Checking for program /ccs/home/adams/git-fat/mpiexec...not found Checking for program /ccs/home/adams/git-fat/mpirun...not found Checking for program /ccs/home/adams/git-fat/mprun...not found Checking for program /opt/cray/llm/default/bin/mpiexec...not found Checking for program /opt/cray/llm/default/bin/mpirun...not found Checking for program /opt/cray/llm/default/bin/mprun...not found Checking for program /opt/cray/llm/default/bin/mpiexec...not found Checking for program /opt/cray/llm/default/bin/mpirun...not found Checking for program /opt/cray/llm/default/bin/mprun...not found Checking for program /opt/cray/llm/default/etc/mpiexec...not found Checking for program /opt/cray/llm/default/etc/mpirun...not found Checking for program /opt/cray/llm/default/etc/mprun...not found Checking for program /opt/cray/llm/default/etc/mpiexec...not found Checking for program /opt/cray/llm/default/etc/mpirun...not found Checking for program /opt/cray/llm/default/etc/mprun...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mpiexec...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mpirun...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mprun...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mpiexec...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mpirun...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mprun...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mpiexec...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mpirun...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mprun...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mpiexec...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mpirun...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mprun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mpiexec...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mpirun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mprun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mpiexec...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mpirun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mprun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mpiexec...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mpirun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mprun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mpiexec...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mpirun...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mprun...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mpiexec...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mpirun...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mprun...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mpiexec...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mpirun...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mprun...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mpiexec...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mpirun...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mprun...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mpiexec...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mpirun...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mprun...not found Checking for program /ccs/home/adams/git-fat/mpiexec...not found Checking for program /ccs/home/adams/git-fat/mpirun...not found Checking for program /ccs/home/adams/git-fat/mprun...not found Checking for program /ccs/home/adams/git-fat/mpiexec...not found Checking for program /ccs/home/adams/git-fat/mpirun...not found Checking for program /ccs/home/adams/git-fat/mprun...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mpiexec...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mpirun...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mprun...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mpiexec...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mpirun...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mprun...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mpiexec...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mpirun...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mprun...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mpiexec...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mpirun...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mprun...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mpiexec...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mpirun...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mprun...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mpiexec...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mpirun...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mprun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mpiexec...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mpirun...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mprun...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mpiexec...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mpirun...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mprun...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mpiexec...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mpirun...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mprun...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mpiexec...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mpirun...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mprun...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mpiexec...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mpirun...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mprun...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mpiexec...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mpirun...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mprun...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mpiexec...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mpirun...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mprun...not found Checking for program /sw/xk6/altd/bin/mpiexec...not found Checking for program /sw/xk6/altd/bin/mpirun...not found Checking for program /sw/xk6/altd/bin/mprun...not found Checking for program /sw/xk6/altd/bin/mpiexec...not found Checking for program /sw/xk6/altd/bin/mpirun...not found Checking for program /sw/xk6/altd/bin/mprun...not found Checking for program /sw/xk6/site-aprun/bin/mpiexec...not found Checking for program /sw/xk6/site-aprun/bin/mpirun...not found Checking for program /sw/xk6/site-aprun/bin/mprun...not found Checking for program /sw/xk6/site-aprun/bin/mpiexec...not found Checking for program /sw/xk6/site-aprun/bin/mpirun...not found Checking for program /sw/xk6/site-aprun/bin/mprun...not found Checking for program /sw/xk6/bin/mpiexec...not found Checking for program /sw/xk6/bin/mpirun...not found Checking for program /sw/xk6/bin/mprun...not found Checking for program /sw/xk6/bin/mpiexec...not found Checking for program /sw/xk6/bin/mpirun...not found Checking for program /sw/xk6/bin/mprun...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mpiexec...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mpirun...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mprun...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mpiexec...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mpirun...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mprun...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mpiexec...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mpirun...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mprun...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mpiexec...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mpirun...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mprun...not found Checking for program /opt/cray/atp/1.7.5/bin/mpiexec...not found Checking for program /opt/cray/atp/1.7.5/bin/mpirun...not found Checking for program /opt/cray/atp/1.7.5/bin/mprun...not found Checking for program /opt/cray/atp/1.7.5/bin/mpiexec...not found Checking for program /opt/cray/atp/1.7.5/bin/mpirun...not found Checking for program /opt/cray/atp/1.7.5/bin/mprun...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mpiexec...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mpirun...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mprun...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mpiexec...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mpirun...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mprun...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mpiexec...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mpirun...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mprun...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mpiexec...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mpirun...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mprun...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mpiexec...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mpirun...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mprun...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mpiexec...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mpirun...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mprun...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mpiexec...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mpirun...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mprun...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mpiexec...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mpirun...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mprun...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mpiexec...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mpirun...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mprun...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mpiexec...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mpirun...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mprun...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mpiexec...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mpirun...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mprun...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mpiexec...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mpirun...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mprun...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mpiexec...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mpirun...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mprun...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mpiexec...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mpirun...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mprun...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mpiexec...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mpirun...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mprun...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mpiexec...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mpirun...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mprun...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mpiexec...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mpirun...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mprun...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mpiexec...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mpirun...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mprun...not found Checking for program /opt/cray/craype/2.2.1/bin/mpiexec...not found Checking for program /opt/cray/craype/2.2.1/bin/mpirun...not found Checking for program /opt/cray/craype/2.2.1/bin/mprun...not found Checking for program /opt/cray/craype/2.2.1/bin/mpiexec...not found Checking for program /opt/cray/craype/2.2.1/bin/mpirun...not found Checking for program /opt/cray/craype/2.2.1/bin/mprun...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mpiexec...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mpirun...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mprun...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mpiexec...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mpirun...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mprun...not found Checking for program /opt/modules/3.2.6.7/bin/mpiexec...not found Checking for program /opt/modules/3.2.6.7/bin/mpirun...not found Checking for program /opt/modules/3.2.6.7/bin/mprun...not found Checking for program /opt/modules/3.2.6.7/bin/mpiexec...not found Checking for program /opt/modules/3.2.6.7/bin/mpirun...not found Checking for program /opt/modules/3.2.6.7/bin/mprun...not found Checking for program /usr/bin/mpiexec...not found Checking for program /usr/bin/mpirun...not found Checking for program /usr/bin/mprun...not found Checking for program /usr/bin/mpiexec...not found Checking for program /usr/bin/mpirun...not found Checking for program /usr/bin/mprun...not found Checking for program /bin/mpiexec...not found Checking for program /bin/mpirun...not found Checking for program /bin/mprun...not found Checking for program /bin/mpiexec...not found Checking for program /bin/mpirun...not found Checking for program /bin/mprun...not found Checking for program /usr/local/bin/mpiexec...not found Checking for program /usr/local/bin/mpirun...not found Checking for program /usr/local/bin/mprun...not found Checking for program /usr/local/bin/mpiexec...not found Checking for program /usr/local/bin/mpirun...not found Checking for program /usr/local/bin/mprun...not found Checking for program /usr/bin/X11/mpiexec...not found Checking for program /usr/bin/X11/mpirun...not found Checking for program /usr/bin/X11/mprun...not found Checking for program /usr/bin/X11/mpiexec...not found Checking for program /usr/bin/X11/mpirun...not found Checking for program /usr/bin/X11/mprun...not found Checking for program /usr/X11R6/bin/mpiexec...not found Checking for program /usr/X11R6/bin/mpirun...not found Checking for program /usr/X11R6/bin/mprun...not found Checking for program /usr/X11R6/bin/mpiexec...not found Checking for program /usr/X11R6/bin/mpirun...not found Checking for program /usr/X11R6/bin/mprun...not found Checking for program /usr/games/mpiexec...not found Checking for program /usr/games/mpirun...not found Checking for program /usr/games/mprun...not found Checking for program /usr/games/mpiexec...not found Checking for program /usr/games/mpirun...not found Checking for program /usr/games/mprun...not found Checking for program /opt/bin/mpiexec...not found Checking for program /opt/bin/mpirun...not found Checking for program /opt/bin/mprun...not found Checking for program /opt/bin/mpiexec...not found Checking for program /opt/bin/mpirun...not found Checking for program /opt/bin/mprun...not found Checking for program /usr/lib/mit/bin/mpiexec...not found Checking for program /usr/lib/mit/bin/mpirun...not found Checking for program /usr/lib/mit/bin/mprun...not found Checking for program /usr/lib/mit/bin/mpiexec...not found Checking for program /usr/lib/mit/bin/mpirun...not found Checking for program /usr/lib/mit/bin/mprun...not found Checking for program /usr/lib/mit/sbin/mpiexec...not found Checking for program /usr/lib/mit/sbin/mpirun...not found Checking for program /usr/lib/mit/sbin/mprun...not found Checking for program /usr/lib/mit/sbin/mpiexec...not found Checking for program /usr/lib/mit/sbin/mpirun...not found Checking for program /usr/lib/mit/sbin/mprun...not found Checking for program /sbin/mpiexec...not found Checking for program /sbin/mpirun...not found Checking for program /sbin/mprun...not found Checking for program /sbin/mpiexec...not found Checking for program /sbin/mpirun...not found Checking for program /sbin/mprun...not found Checking for program /usr/sbin/mpiexec...not found Checking for program /usr/sbin/mpirun...not found Checking for program /usr/sbin/mprun...not found Checking for program /usr/sbin/mpiexec...not found Checking for program /usr/sbin/mpirun...not found Checking for program /usr/sbin/mprun...not found Checking for program /usr/lib/qt3/bin/mpiexec...not found Checking for program /usr/lib/qt3/bin/mpirun...not found Checking for program /usr/lib/qt3/bin/mprun...not found Checking for program /usr/lib/qt3/bin/mpiexec...not found Checking for program /usr/lib/qt3/bin/mpirun...not found Checking for program /usr/lib/qt3/bin/mprun...not found Checking for program /opt/cray/bin/mpiexec...not found Checking for program /opt/cray/bin/mpirun...not found Checking for program /opt/cray/bin/mprun...not found Checking for program /opt/cray/bin/mpiexec...not found Checking for program /opt/cray/bin/mpirun...not found Checking for program /opt/cray/bin/mprun...not found Checking for program /opt/public/bin/mpiexec...not found Checking for program /opt/public/bin/mpirun...not found Checking for program /opt/public/bin/mprun...not found Checking for program /opt/public/bin/mpiexec...not found Checking for program /opt/public/bin/mpirun...not found Checking for program /opt/public/bin/mprun...not found Checking for program /opt/bin/mpiexec...not found Checking for program /opt/bin/mpirun...not found Checking for program /opt/bin/mprun...not found Checking for program /opt/bin/mpiexec...not found Checking for program /opt/bin/mpirun...not found Checking for program /opt/bin/mprun...not found Checking for program /opt/public/bin/mpiexec...not found Checking for program /opt/public/bin/mpirun...not found Checking for program /opt/public/bin/mprun...not found Checking for program /opt/public/bin/mpiexec...not found Checking for program /opt/public/bin/mpirun...not found Checking for program /opt/public/bin/mprun...not found Checking for program /ccs/home/adams/mpiexec...not found Checking for program /ccs/home/adams/mpirun...not found Checking for program /ccs/home/adams/mprun...not found Checking for program /ccs/home/adams/mpiexec...not found Checking for program /ccs/home/adams/mpirun...not found Checking for program /ccs/home/adams/mprun...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/mpiexec...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/mpirun...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/mprun...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/mpiexec...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/mpirun...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/mprun...not found Checking for program /bin/false...found Defined make macro "MPIEXEC" to "/bin/false" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast -I/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include -I/opt/cray/hdf5-parallel/1.8.13/PGI/141/include -I/opt/acml/5.3.1/pgi64_fma4_mp/include -I/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include -I/opt/cray/libsci/13.0.1/PGI/141/interlagos/include -I/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include -I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include -I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include -I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include -I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include -I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include -I/opt/cray-hss-devel/7.2.0/include /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Executing: /usr/bin/ar cr /tmp/scratch/petsc-kMEe3S/config.packages.MPI/libconftest.a /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o ; /usr/bin/ranlib /tmp/scratch/petsc-kMEe3S/config.packages.MPI/libconftest.a Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast -I/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/include -I/opt/cray/hdf5-parallel/1.8.13/PGI/141/include -I/opt/acml/5.3.1/pgi64_fma4_mp/include -I/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/include -I/opt/cray/libsci/13.0.1/PGI/141/interlagos/include -I/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/include -I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include -I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include -I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include -I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include -I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.53341.1.1.gem/include -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include -I/opt/cray-hss-devel/7.2.0/include /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Executing: /usr/bin/ar cr /tmp/scratch/petsc-kMEe3S/config.packages.MPI/libconftest.a /tmp/scratch/petsc-kMEe3S/config.packages.MPI/conftest.o ; /usr/bin/ranlib /tmp/scratch/petsc-kMEe3S/config.packages.MPI/libconftest.a ================================================================================ TEST locateCMake from config.packages.cmake(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/cmake.py:30) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:30) Looking for default CMake executable Checking for program /ccs/home/adams/git-fat/cmake...not found Checking for program /opt/cray/llm/default/bin/cmake...not found Checking for program /opt/cray/llm/default/etc/cmake...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/cmake...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/cmake...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/cmake...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/cmake...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/cmake...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/cmake...not found Checking for program /ccs/home/adams/git-fat/cmake...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/cmake...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/cmake...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/cmake...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/cmake...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/cmake...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/cmake...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cmake...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake...found Defined make macro "CMAKE" to "/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake" Scalar type is real Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Precision is double ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/scalarTypes.py:37) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_ISNORMAL" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_ISNAN" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Defined "HAVE_ISINF" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.c:6: undefined reference to `_isnan' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest' Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Executing: cc -o /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.o: In function `main': /tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest.c:6: undefined reference to `_finite' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes/conftest' Popping language C ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/lustre/atlas2/env003/scratch/adams/petsc/config/PETSc/options/scalarTypes.py:77) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:77) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.X(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Numpy(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.Numpy(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default Pushing language C Executing: ['git', 'clone', 'https://bitbucket.org/petsc/pkg-sowing.git', '/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing'] Executing: ['git', 'checkout', '-f', '9c5b20c'] No functions to check for in library [] [] Popping language C PETSc clone, checking for Sowing Checking for program /ccs/home/adams/git-fat/pdflatex...not found Checking for program /opt/cray/llm/default/bin/pdflatex...not found Checking for program /opt/cray/llm/default/etc/pdflatex...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/pdflatex...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/pdflatex...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/pdflatex...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/pdflatex...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/pdflatex...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/pdflatex...not found Checking for program /ccs/home/adams/git-fat/pdflatex...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/pdflatex...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/pdflatex...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/pdflatex...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/pdflatex...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/pdflatex...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/pdflatex...not found Checking for program /opt/cray/netcdf/4.3.2/bin/pdflatex...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/pdflatex...not found Checking for program /sw/xk6/altd/bin/pdflatex...not found Checking for program /sw/xk6/site-aprun/bin/pdflatex...not found Checking for program /sw/xk6/bin/pdflatex...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/pdflatex...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/pdflatex...not found Checking for program /opt/cray/atp/1.7.5/bin/pdflatex...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/pdflatex...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/pdflatex...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/pdflatex...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/pdflatex...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/pdflatex...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/pdflatex...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/pdflatex...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/pdflatex...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/pdflatex...not found Checking for program /opt/cray/craype/2.2.1/bin/pdflatex...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/pdflatex...not found Checking for program /opt/modules/3.2.6.7/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/X11/pdflatex...not found Checking for program /usr/X11R6/bin/pdflatex...not found Checking for program /usr/games/pdflatex...not found Checking for program /opt/bin/pdflatex...not found Checking for program /usr/lib/mit/bin/pdflatex...not found Checking for program /usr/lib/mit/sbin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /usr/lib/qt3/bin/pdflatex...not found Checking for program /opt/cray/bin/pdflatex...not found Checking for program /opt/public/bin/pdflatex...not found Checking for program /opt/bin/pdflatex...not found Checking for program /opt/public/bin/pdflatex...not found Checking for program /ccs/home/adams/pdflatex...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/pdflatex...not found Checking for program /ccs/home/adams/git-fat/bfort...not found Checking for program /opt/cray/llm/default/bin/bfort...not found Checking for program /opt/cray/llm/default/etc/bfort...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/bfort...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/bfort...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/bfort...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/bfort...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/bfort...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/bfort...not found Checking for program /ccs/home/adams/git-fat/bfort...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/bfort...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/bfort...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/bfort...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/bfort...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/bfort...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/bfort...not found Checking for program /opt/cray/netcdf/4.3.2/bin/bfort...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/bfort...not found Checking for program /sw/xk6/altd/bin/bfort...not found Checking for program /sw/xk6/site-aprun/bin/bfort...not found Checking for program /sw/xk6/bin/bfort...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/bfort...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/bfort...not found Checking for program /opt/cray/atp/1.7.5/bin/bfort...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/bfort...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/bfort...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/bfort...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/bfort...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/bfort...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/bfort...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/bfort...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/bfort...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/bfort...not found Checking for program /opt/cray/craype/2.2.1/bin/bfort...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/bfort...not found Checking for program /opt/modules/3.2.6.7/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/bin/X11/bfort...not found Checking for program /usr/X11R6/bin/bfort...not found Checking for program /usr/games/bfort...not found Checking for program /opt/bin/bfort...not found Checking for program /usr/lib/mit/bin/bfort...not found Checking for program /usr/lib/mit/sbin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /usr/lib/qt3/bin/bfort...not found Checking for program /opt/cray/bin/bfort...not found Checking for program /opt/public/bin/bfort...not found Checking for program /opt/bin/bfort...not found Checking for program /opt/public/bin/bfort...not found Checking for program /ccs/home/adams/bfort...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/bfort...not found Checking for program /ccs/home/adams/git-fat/doctext...not found Checking for program /opt/cray/llm/default/bin/doctext...not found Checking for program /opt/cray/llm/default/etc/doctext...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/doctext...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/doctext...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/doctext...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/doctext...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/doctext...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/doctext...not found Checking for program /ccs/home/adams/git-fat/doctext...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/doctext...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/doctext...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/doctext...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/doctext...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/doctext...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/doctext...not found Checking for program /opt/cray/netcdf/4.3.2/bin/doctext...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/doctext...not found Checking for program /sw/xk6/altd/bin/doctext...not found Checking for program /sw/xk6/site-aprun/bin/doctext...not found Checking for program /sw/xk6/bin/doctext...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/doctext...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/doctext...not found Checking for program /opt/cray/atp/1.7.5/bin/doctext...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/doctext...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/doctext...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/doctext...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/doctext...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/doctext...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/doctext...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/doctext...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/doctext...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/doctext...not found Checking for program /opt/cray/craype/2.2.1/bin/doctext...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/doctext...not found Checking for program /opt/modules/3.2.6.7/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/bin/X11/doctext...not found Checking for program /usr/X11R6/bin/doctext...not found Checking for program /usr/games/doctext...not found Checking for program /opt/bin/doctext...not found Checking for program /usr/lib/mit/bin/doctext...not found Checking for program /usr/lib/mit/sbin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /usr/lib/qt3/bin/doctext...not found Checking for program /opt/cray/bin/doctext...not found Checking for program /opt/public/bin/doctext...not found Checking for program /opt/bin/doctext...not found Checking for program /opt/public/bin/doctext...not found Checking for program /ccs/home/adams/doctext...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/doctext...not found Checking for program /ccs/home/adams/git-fat/mapnames...not found Checking for program /opt/cray/llm/default/bin/mapnames...not found Checking for program /opt/cray/llm/default/etc/mapnames...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/mapnames...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/mapnames...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mapnames...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mapnames...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mapnames...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mapnames...not found Checking for program /ccs/home/adams/git-fat/mapnames...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mapnames...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mapnames...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mapnames...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mapnames...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mapnames...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/mapnames...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mapnames...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mapnames...not found Checking for program /sw/xk6/altd/bin/mapnames...not found Checking for program /sw/xk6/site-aprun/bin/mapnames...not found Checking for program /sw/xk6/bin/mapnames...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mapnames...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mapnames...not found Checking for program /opt/cray/atp/1.7.5/bin/mapnames...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mapnames...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mapnames...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mapnames...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mapnames...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mapnames...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mapnames...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mapnames...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mapnames...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mapnames...not found Checking for program /opt/cray/craype/2.2.1/bin/mapnames...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mapnames...not found Checking for program /opt/modules/3.2.6.7/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/bin/X11/mapnames...not found Checking for program /usr/X11R6/bin/mapnames...not found Checking for program /usr/games/mapnames...not found Checking for program /opt/bin/mapnames...not found Checking for program /usr/lib/mit/bin/mapnames...not found Checking for program /usr/lib/mit/sbin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /usr/lib/qt3/bin/mapnames...not found Checking for program /opt/cray/bin/mapnames...not found Checking for program /opt/public/bin/mapnames...not found Checking for program /opt/bin/mapnames...not found Checking for program /opt/public/bin/mapnames...not found Checking for program /ccs/home/adams/mapnames...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/mapnames...not found Checking for program /ccs/home/adams/git-fat/bib2html...not found Checking for program /opt/cray/llm/default/bin/bib2html...not found Checking for program /opt/cray/llm/default/etc/bib2html...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/bib2html...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/bib2html...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/bib2html...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/bib2html...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/bib2html...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/bib2html...not found Checking for program /ccs/home/adams/git-fat/bib2html...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/bib2html...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/bib2html...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/bib2html...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/bib2html...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/bib2html...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/bib2html...not found Checking for program /opt/cray/netcdf/4.3.2/bin/bib2html...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/bib2html...not found Checking for program /sw/xk6/altd/bin/bib2html...not found Checking for program /sw/xk6/site-aprun/bin/bib2html...not found Checking for program /sw/xk6/bin/bib2html...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/bib2html...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/bib2html...not found Checking for program /opt/cray/atp/1.7.5/bin/bib2html...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/bib2html...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/bib2html...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/bib2html...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/bib2html...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/bib2html...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/bib2html...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/bib2html...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/bib2html...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/bib2html...not found Checking for program /opt/cray/craype/2.2.1/bin/bib2html...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/bib2html...not found Checking for program /opt/modules/3.2.6.7/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/bin/X11/bib2html...not found Checking for program /usr/X11R6/bin/bib2html...not found Checking for program /usr/games/bib2html...not found Checking for program /opt/bin/bib2html...not found Checking for program /usr/lib/mit/bin/bib2html...not found Checking for program /usr/lib/mit/sbin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /usr/lib/qt3/bin/bib2html...not found Checking for program /opt/cray/bin/bib2html...not found Checking for program /opt/public/bin/bib2html...not found Checking for program /opt/bin/bib2html...not found Checking for program /opt/public/bin/bib2html...not found Checking for program /ccs/home/adams/bib2html...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs ================================================================================ TEST configureLibrary from config.packages.sowing(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:571) TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:571) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING in directory starting with sowing Could not locate an existing copy of sowing: [] Downloading sowing =============================================================================== Trying to download https://bitbucket.org/petsc/pkg-sowing.git for SOWING =============================================================================== Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing Have to rebuild sowing, /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/sowing.petscconf != /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/lib/petsc/conf/sowing =============================================================================== Running configure on SOWING; this may take several minutes =============================================================================== Executing: cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing && ./configure --prefix=/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... no checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing default commands =============================================================================== Running make on SOWING; this may take several minutes =============================================================================== Executing: cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing && /usr/bin/gmake clean stdout: for dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/sys' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bfort' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml/testing' gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext/test' /bin/rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/mapnames' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bib2html' gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src' gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/docs' rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& /usr/bin/gmake clean) gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/docs/doctext' rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/docs/doctext' gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Executing: cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing && /usr/bin/gmake stdout: (cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml' gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c tohtml.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c tex2html.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c search.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c texactio.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c rdaux.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c rdindx.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c label.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c scan.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c refmap.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c style.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c dimen.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c userdef.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c tabular.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c biblio.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c environ.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c math.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c rddefs.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c latexinfo.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c accent.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bfort' gcc -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/bfort-base.txt"' -DBASEPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/bfort-base.txt"' -DBASEPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' gmake[1]: Nothing to be done for `ALL'. gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/mapnames' =============================================================================== Running make install on SOWING; this may take several minutes =============================================================================== Executing: cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing && /usr/bin/gmake install stdout: /usr/bin/install -c bin/bib2html /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bib2html /usr/bin/install -c src/doctext/doctext /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/doctext /usr/bin/install -c src/doctext/doc2lt /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/tohtml if [ "`cd bin && pwd`" != "`cd /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bfort /usr/bin/install -c src/mapnames/mapnames /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/man/man1/bfort.1 ;\ fi ********Output of running make on sowing follows ******* checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... no checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing default commandsfor dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/sys' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bfort' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml/testing' gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext/test' /bin/rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/mapnames' gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bib2html' gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src' gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/docs' rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& /usr/bin/gmake clean) gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/docs/doctext' rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/docs/doctext' gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml' gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c tohtml.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c tex2html.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c search.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c texactio.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c rdaux.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c rdindx.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c label.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c scan.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c refmap.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c style.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c dimen.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c userdef.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c tabular.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c biblio.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c environ.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c math.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c rddefs.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c latexinfo.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c accent.c gcc -DPSPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/"' -DBMSOURCE='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/"' -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt"' -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bfort' gcc -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/bfort-base.txt"' -DBASEPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/bfort-base.txt"' -DBASEPATH='"/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' gmake[1]: Nothing to be done for `ALL'. gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/src/mapnames'../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xb73): warning: the use of `mktemp' is dangerous, better use `mkstemp' ../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xb73): warning: the use of `mktemp' is dangerous, better use `mkstemp' doc2lt.cc:168:35: warning: missing terminating ' character /usr/bin/install -c bin/bib2html /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bib2html /usr/bin/install -c src/doctext/doctext /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/doctext /usr/bin/install -c src/doctext/doc2lt /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/tohtml if [ "`cd bin && pwd`" != "`cd /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bfort /usr/bin/install -c src/mapnames/mapnames /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/share/man/man1/bfort.1 ;\ fi********End of Output of running make on sowing ******* Executing: cp -f /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/sowing/sowing.petscconf /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/lib/petsc/conf/sowing Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for headers Download SOWING: ['/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/include'] ================================================================================ TEST checkSharedLibrary from config.packages.sowing(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:625) TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:625) By default we don't care about checking if the library is shared Checking for program /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bfort...found Defined make macro "BFORT" to "/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bfort" Checking for program /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/doctext...found Defined make macro "DOCTEXT" to "/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/doctext" Checking for program /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/mapnames...found Defined make macro "MAPNAMES" to "/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/mapnames" Checking for program /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bib2html...found Defined make macro "BIB2HTML" to "/lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bib2html" Running /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/bin/bfort to generate fortran stubs ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/Matlab.py:35) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/packages/Matlab.py:35) ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.papi(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.papi(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default Pushing language C No functions to check for in library [] [] Pushing language C Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Popping language C No functions to check for in library [] [] Pushing language C Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.headers -I/usr/local/include /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Popping language C No functions to check for in library [] [] Pushing language C Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.headers -I/usr/local/include /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c"stderr: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3) PGC/x86-64 Linux 14.2-0: compilation aborted : Preprocess stderr after filtering:PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c: 3)PGC/x86-64 Linux 14.2-0: compilation aborted: Popping language C Executing: uname -s stdout: Linux Popping language C ================================================================================ TEST configureLibrary from config.packages.valgrind(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:571) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:571) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for headers Compiler specific search VALGRIND: [] ================================================================================ TEST checkInclude from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] ================================================================================ TEST checkInclude from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] ================================================================================ TEST checkInclude from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths VALGRIND: SearchDir DirPath not found.. skipping: /opt/local =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== ================================================================================ TEST locateC2html from config.packages.c2html(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /ccs/home/adams/git-fat/c2html...not found Checking for program /opt/cray/llm/default/bin/c2html...not found Checking for program /opt/cray/llm/default/etc/c2html...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/c2html...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/c2html...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/c2html...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/c2html...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/c2html...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/c2html...not found Checking for program /ccs/home/adams/git-fat/c2html...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/c2html...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/c2html...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/c2html...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/c2html...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/c2html...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/c2html...not found Checking for program /opt/cray/netcdf/4.3.2/bin/c2html...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/c2html...not found Checking for program /sw/xk6/altd/bin/c2html...not found Checking for program /sw/xk6/site-aprun/bin/c2html...not found Checking for program /sw/xk6/bin/c2html...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/c2html...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/c2html...not found Checking for program /opt/cray/atp/1.7.5/bin/c2html...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/c2html...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/c2html...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/c2html...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/c2html...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/c2html...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/c2html...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/c2html...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/c2html...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/c2html...not found Checking for program /opt/cray/craype/2.2.1/bin/c2html...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/c2html...not found Checking for program /opt/modules/3.2.6.7/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/X11/c2html...not found Checking for program /usr/X11R6/bin/c2html...not found Checking for program /usr/games/c2html...not found Checking for program /opt/bin/c2html...not found Checking for program /usr/lib/mit/bin/c2html...not found Checking for program /usr/lib/mit/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /usr/lib/qt3/bin/c2html...not found Checking for program /opt/cray/bin/c2html...not found Checking for program /opt/public/bin/c2html...not found Checking for program /opt/bin/c2html...not found Checking for program /opt/public/bin/c2html...not found Checking for program /ccs/home/adams/c2html...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/c2html...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hwloc(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default Pushing language C Checking for functions [pthread_create] in library [] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-kMEe3S/config.libraries/conftest -mp -fast /tmp/scratch/petsc-kMEe3S/config.libraries/conftest.o -L/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib -L/opt/acml/5.3.1/pgi64_fma4_mp/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib -L/opt/cray/libsci/13.0.1/PGI/141/interlagos/lib -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/nvvm/lib64 -L/opt/cray/nvidia/default/lib64 -L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -L/opt/cray/atp/1.7.5/lib -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/libso -L/opt/pgi/14.2.0/linux86-64/14.2/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -lcupti -lcudart -lcuda -lnetcdf_parallel -lacml_mp -lmpich_pgi -lAtpSigHandler -lAtpSigHCommData -lrca -lsci_pgi_mpi_mp -lsci_pgi_mp -Wl,-rpath,/opt/pgi/14.2.0/linux86-64/14.2/libso -laccapidmp -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -ldl Popping language C Pushing language C Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" # 1 "/usr/include/pthread.h" # 18 "/usr/include/pthread.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/pthread.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 25 "/usr/include/pthread.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 16 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 1 "/usr/include/sched.h" # 18 "/usr/include/sched.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 24 "/usr/include/sched.h" # 25 "/usr/include/sched.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 27 "/usr/include/sched.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 30 "/usr/include/sched.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 33 "/usr/include/sched.h" # 34 "/usr/include/sched.h" # 1 "/usr/include/bits/sched.h" # 20 "/usr/include/bits/sched.h" # 29 "/usr/include/bits/sched.h" # 38 "/usr/include/bits/sched.h" # 70 "/usr/include/bits/sched.h" struct sched_param { int __sched_priority ; } ; # 79 "/usr/include/bits/sched.h" extern int clone ( int ( * __fn ) ( void * __arg ) , void * __child_stack , int __flags , void * __arg , ... ) ; # 83 "/usr/include/bits/sched.h" extern int unshare ( int __flags ) ; # 86 "/usr/include/bits/sched.h" extern int sched_getcpu ( void ) ; # 97 "/usr/include/bits/sched.h" struct __sched_param { int __sched_priority ; } ; # 108 "/usr/include/bits/sched.h" # 112 "/usr/include/bits/sched.h" typedef unsigned long int __cpu_mask ; # 115 "/usr/include/bits/sched.h" # 119 "/usr/include/bits/sched.h" typedef struct { __cpu_mask __bits [ 4096 / ( 8 * sizeof ( __cpu_mask ) ) ] ; } cpu_set_t ; # 125 "/usr/include/bits/sched.h" # 198 "/usr/include/bits/sched.h" extern int __sched_cpucount ( size_t __setsize , const cpu_set_t * __setp ) ; extern cpu_set_t * __sched_cpualloc ( size_t __count ) ; extern void __sched_cpufree ( cpu_set_t * __set ) ; # 36 "/usr/include/sched.h" # 36 "/usr/include/sched.h" # 42 "/usr/include/sched.h" extern int sched_setparam ( __pid_t __pid , const struct sched_param * __param ) ; # 46 "/usr/include/sched.h" extern int sched_getparam ( __pid_t __pid , struct sched_param * __param ) ; # 49 "/usr/include/sched.h" extern int sched_setscheduler ( __pid_t __pid , int __policy , const struct sched_param * __param ) ; # 53 "/usr/include/sched.h" extern int sched_getscheduler ( __pid_t __pid ) ; # 56 "/usr/include/sched.h" extern int sched_yield ( void ) ; # 59 "/usr/include/sched.h" extern int sched_get_priority_max ( int __algorithm ) ; # 62 "/usr/include/sched.h" extern int sched_get_priority_min ( int __algorithm ) ; # 65 "/usr/include/sched.h" extern int sched_rr_get_interval ( __pid_t __pid , struct timespec * __t ) ; # 21 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" # 81 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" extern int sched_setaffinity ( __pid_t __pid , size_t __cpusetsize , const cpu_set_t * __cpuset ) ; # 86 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sched.h" extern int sched_getaffinity ( __pid_t __pid , size_t __cpusetsize , cpu_set_t * __cpuset ) ; # 26 "/usr/include/pthread.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 29 "/usr/include/time.h" # 35 "/usr/include/time.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 39 "/usr/include/time.h" # 41 "/usr/include/time.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 30 "/usr/include/bits/time.h" # 33 "/usr/include/bits/time.h" # 45 "/usr/include/bits/time.h" # 47 "/usr/include/bits/time.h" # 49 "/usr/include/bits/time.h" # 51 "/usr/include/bits/time.h" # 54 "/usr/include/bits/time.h" # 43 "/usr/include/time.h" # 44 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 57 "/usr/include/time.h" # 59 "/usr/include/time.h" typedef __clock_t clock_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 132 "/usr/include/time.h" struct tm { int tm_sec ; int tm_min ; int tm_hour ; int tm_mday ; int tm_mon ; int tm_year ; int tm_wday ; int tm_yday ; int tm_isdst ; # 146 "/usr/include/time.h" long int tm_gmtoff ; const char * tm_zone ; # 152 "/usr/include/time.h" } ; # 160 "/usr/include/time.h" struct itimerspec { struct timespec it_interval ; struct timespec it_value ; } ; # 167 "/usr/include/time.h" struct sigevent ; # 174 "/usr/include/time.h" typedef __pid_t pid_t ; # 182 "/usr/include/time.h" extern clock_t clock ( void ) ; # 185 "/usr/include/time.h" extern time_t time ( time_t * __timer ) ; # 188 "/usr/include/time.h" extern double difftime ( time_t __time1 , time_t __time0 ) __attribute__ ( ( __const__ ) ) ; # 192 "/usr/include/time.h" extern time_t mktime ( struct tm * __tp ) ; # 198 "/usr/include/time.h" extern size_t strftime ( char * __restrict __s , size_t __maxsize , const char * __restrict __format , const struct tm * __restrict __tp ) ; # 214 "/usr/include/time.h" # 1 "/usr/include/xlocale.h" # 19 "/usr/include/xlocale.h" # 27 "/usr/include/xlocale.h" typedef struct __locale_struct { struct locale_data * __locales [ 13 ] ; # 33 "/usr/include/xlocale.h" const unsigned short int * __ctype_b ; const int * __ctype_tolower ; const int * __ctype_toupper ; # 38 "/usr/include/xlocale.h" const char * __names [ 13 ] ; } * __locale_t ; # 42 "/usr/include/xlocale.h" typedef __locale_t locale_t ; # 216 "/usr/include/time.h" # 217 "/usr/include/time.h" extern size_t strftime_l ( char * __restrict __s , size_t __maxsize , const char * __restrict __format , const struct tm * __restrict __tp , __locale_t __loc ) ; # 232 "/usr/include/time.h" extern struct tm * gmtime ( const time_t * __timer ) ; # 236 "/usr/include/time.h" extern struct tm * localtime ( const time_t * __timer ) ; # 242 "/usr/include/time.h" extern struct tm * gmtime_r ( const time_t * __restrict __timer , struct tm * __restrict __tp ) ; # 247 "/usr/include/time.h" extern struct tm * localtime_r ( const time_t * __restrict __timer , struct tm * __restrict __tp ) ; # 254 "/usr/include/time.h" extern char * asctime ( const struct tm * __tp ) ; # 257 "/usr/include/time.h" extern char * ctime ( const time_t * __timer ) ; # 262 "/usr/include/time.h" # 265 "/usr/include/time.h" extern char * asctime_r ( const struct tm * __restrict __tp , char * __restrict __buf ) ; # 269 "/usr/include/time.h" extern char * ctime_r ( const time_t * __restrict __timer , char * __restrict __buf ) ; # 275 "/usr/include/time.h" extern char * __tzname [ 2 ] ; extern int __daylight ; extern long int __timezone ; # 282 "/usr/include/time.h" extern char * tzname [ 2 ] ; # 286 "/usr/include/time.h" extern void tzset ( void ) ; # 291 "/usr/include/time.h" extern int daylight ; extern long int timezone ; # 297 "/usr/include/time.h" extern int stime ( const time_t * __when ) ; # 303 "/usr/include/time.h" # 310 "/usr/include/time.h" # 312 "/usr/include/time.h" extern time_t timegm ( struct tm * __tp ) ; # 315 "/usr/include/time.h" extern time_t timelocal ( struct tm * __tp ) ; # 318 "/usr/include/time.h" extern int dysize ( int __year ) __attribute__ ( ( __const__ ) ) ; # 327 "/usr/include/time.h" extern int nanosleep ( const struct timespec * __requested_time , struct timespec * __remaining ) ; # 332 "/usr/include/time.h" extern int clock_getres ( clockid_t __clock_id , struct timespec * __res ) ; # 335 "/usr/include/time.h" extern int clock_gettime ( clockid_t __clock_id , struct timespec * __tp ) ; # 338 "/usr/include/time.h" extern int clock_settime ( clockid_t __clock_id , const struct timespec * __tp ) ; # 346 "/usr/include/time.h" extern int clock_nanosleep ( clockid_t __clock_id , int __flags , const struct timespec * __req , struct timespec * __rem ) ; # 351 "/usr/include/time.h" extern int clock_getcpuclockid ( pid_t __pid , clockid_t * __clock_id ) ; # 356 "/usr/include/time.h" extern int timer_create ( clockid_t __clock_id , struct sigevent * __restrict __evp , timer_t * __restrict __timerid ) ; # 361 "/usr/include/time.h" extern int timer_delete ( timer_t __timerid ) ; # 364 "/usr/include/time.h" extern int timer_settime ( timer_t __timerid , int __flags , const struct itimerspec * __restrict __value , struct itimerspec * __restrict __ovalue ) ; # 369 "/usr/include/time.h" extern int timer_gettime ( timer_t __timerid , struct itimerspec * __value ) ; # 373 "/usr/include/time.h" extern int timer_getoverrun ( timer_t __timerid ) ; # 27 "/usr/include/pthread.h" # 1 "/usr/include/signal.h" # 17 "/usr/include/signal.h" # 21 "/usr/include/signal.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 30 "/usr/include/signal.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 34 "/usr/include/signal.h" # 36 "/usr/include/signal.h" # 50 "/usr/include/signal.h" typedef __sigset_t sigset_t ; # 30 "/usr/include/pthread.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 31 "/usr/include/pthread.h" # 1 "/usr/include/bits/setjmp.h" # 17 "/usr/include/bits/setjmp.h" # 19 "/usr/include/bits/setjmp.h" # 1 "/usr/include/bits/wordsize.h" # 28 "/usr/include/bits/setjmp.h" # 32 "/usr/include/bits/setjmp.h" typedef long int __jmp_buf [ 8 ] ; # 32 "/usr/include/pthread.h" # 1 "/usr/include/bits/wordsize.h" # 33 "/usr/include/pthread.h" # 35 "/usr/include/pthread.h" enum { PTHREAD_CREATE_JOINABLE , # 40 "/usr/include/pthread.h" PTHREAD_CREATE_DETACHED # 42 "/usr/include/pthread.h" } ; # 45 "/usr/include/pthread.h" enum { PTHREAD_MUTEX_TIMED_NP , PTHREAD_MUTEX_RECURSIVE_NP , PTHREAD_MUTEX_ERRORCHECK_NP , PTHREAD_MUTEX_ADAPTIVE_NP # 63 "/usr/include/pthread.h" } ; # 67 "/usr/include/pthread.h" enum { PTHREAD_MUTEX_STALLED , PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED , PTHREAD_MUTEX_ROBUST , PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST } ; # 89 "/usr/include/pthread.h" # 115 "/usr/include/pthread.h" # 117 "/usr/include/pthread.h" enum { PTHREAD_RWLOCK_PREFER_READER_NP , PTHREAD_RWLOCK_PREFER_WRITER_NP , PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP , PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP } ; # 125 "/usr/include/pthread.h" # 148 "/usr/include/pthread.h" enum { PTHREAD_INHERIT_SCHED , # 153 "/usr/include/pthread.h" PTHREAD_EXPLICIT_SCHED # 155 "/usr/include/pthread.h" } ; # 158 "/usr/include/pthread.h" enum { PTHREAD_SCOPE_SYSTEM , # 163 "/usr/include/pthread.h" PTHREAD_SCOPE_PROCESS # 165 "/usr/include/pthread.h" } ; # 168 "/usr/include/pthread.h" enum { PTHREAD_PROCESS_PRIVATE , # 173 "/usr/include/pthread.h" PTHREAD_PROCESS_SHARED # 175 "/usr/include/pthread.h" } ; # 179 "/usr/include/pthread.h" # 183 "/usr/include/pthread.h" struct _pthread_cleanup_buffer { void ( * __routine ) ( void * ) ; void * __arg ; int __canceltype ; struct _pthread_cleanup_buffer * __prev ; } ; # 192 "/usr/include/pthread.h" enum { PTHREAD_CANCEL_ENABLE , # 197 "/usr/include/pthread.h" PTHREAD_CANCEL_DISABLE # 199 "/usr/include/pthread.h" } ; enum { PTHREAD_CANCEL_DEFERRED , # 204 "/usr/include/pthread.h" PTHREAD_CANCEL_ASYNCHRONOUS # 206 "/usr/include/pthread.h" } ; # 210 "/usr/include/pthread.h" # 217 "/usr/include/pthread.h" # 226 "/usr/include/pthread.h" extern int pthread_create ( pthread_t * __restrict __newthread , const pthread_attr_t * __restrict __attr , void * ( * __start_routine ) ( void * ) , void * __restrict __arg ) ; # 235 "/usr/include/pthread.h" extern void pthread_exit ( void * __retval ) __attribute__ ( ( __noreturn__ ) ) ; # 243 "/usr/include/pthread.h" extern int pthread_join ( pthread_t __th , void * * __thread_return ) ; # 264 "/usr/include/pthread.h" extern int pthread_detach ( pthread_t __th ) ; # 268 "/usr/include/pthread.h" extern pthread_t pthread_self ( void ) __attribute__ ( ( __const__ ) ) ; # 271 "/usr/include/pthread.h" extern int pthread_equal ( pthread_t __thread1 , pthread_t __thread2 ) ; # 275 "/usr/include/pthread.h" # 279 "/usr/include/pthread.h" extern int pthread_attr_init ( pthread_attr_t * __attr ) ; # 282 "/usr/include/pthread.h" extern int pthread_attr_destroy ( pthread_attr_t * __attr ) ; # 286 "/usr/include/pthread.h" extern int pthread_attr_getdetachstate ( const pthread_attr_t * __attr , int * __detachstate ) ; # 291 "/usr/include/pthread.h" extern int pthread_attr_setdetachstate ( pthread_attr_t * __attr , int __detachstate ) ; # 297 "/usr/include/pthread.h" extern int pthread_attr_getguardsize ( const pthread_attr_t * __attr , size_t * __guardsize ) ; # 302 "/usr/include/pthread.h" extern int pthread_attr_setguardsize ( pthread_attr_t * __attr , size_t __guardsize ) ; # 308 "/usr/include/pthread.h" extern int pthread_attr_getschedparam ( const pthread_attr_t * __restrict __attr , struct sched_param * __restrict __param ) ; # 314 "/usr/include/pthread.h" extern int pthread_attr_setschedparam ( pthread_attr_t * __restrict __attr , const struct sched_param * __restrict __param ) ; # 319 "/usr/include/pthread.h" extern int pthread_attr_getschedpolicy ( const pthread_attr_t * __restrict __attr , int * __restrict __policy ) ; # 324 "/usr/include/pthread.h" extern int pthread_attr_setschedpolicy ( pthread_attr_t * __attr , int __policy ) ; # 328 "/usr/include/pthread.h" extern int pthread_attr_getinheritsched ( const pthread_attr_t * __restrict __attr , int * __restrict __inherit ) ; # 333 "/usr/include/pthread.h" extern int pthread_attr_setinheritsched ( pthread_attr_t * __attr , int __inherit ) ; # 339 "/usr/include/pthread.h" extern int pthread_attr_getscope ( const pthread_attr_t * __restrict __attr , int * __restrict __scope ) ; # 344 "/usr/include/pthread.h" extern int pthread_attr_setscope ( pthread_attr_t * __attr , int __scope ) ; # 348 "/usr/include/pthread.h" extern int pthread_attr_getstackaddr ( const pthread_attr_t * __restrict __attr , void * * __restrict __stackaddr ) ; # 356 "/usr/include/pthread.h" extern int pthread_attr_setstackaddr ( pthread_attr_t * __attr , void * __stackaddr ) ; # 361 "/usr/include/pthread.h" extern int pthread_attr_getstacksize ( const pthread_attr_t * __restrict __attr , size_t * __restrict __stacksize ) ; # 368 "/usr/include/pthread.h" extern int pthread_attr_setstacksize ( pthread_attr_t * __attr , size_t __stacksize ) ; # 374 "/usr/include/pthread.h" extern int pthread_attr_getstack ( const pthread_attr_t * __restrict __attr , void * * __restrict __stackaddr , size_t * __restrict __stacksize ) ; # 382 "/usr/include/pthread.h" extern int pthread_attr_setstack ( pthread_attr_t * __attr , void * __stackaddr , size_t __stacksize ) ; # 411 "/usr/include/pthread.h" # 414 "/usr/include/pthread.h" extern int pthread_setschedparam ( pthread_t __target_thread , int __policy , const struct sched_param * __param ) ; # 419 "/usr/include/pthread.h" extern int pthread_getschedparam ( pthread_t __target_thread , int * __restrict __policy , struct sched_param * __restrict __param ) ; # 425 "/usr/include/pthread.h" extern int pthread_setschedprio ( pthread_t __target_thread , int __prio ) ; # 459 "/usr/include/pthread.h" # 467 "/usr/include/pthread.h" extern int pthread_once ( pthread_once_t * __once_control , void ( * __init_routine ) ( void ) ) ; # 476 "/usr/include/pthread.h" # 479 "/usr/include/pthread.h" extern int pthread_setcancelstate ( int __state , int * __oldstate ) ; # 483 "/usr/include/pthread.h" extern int pthread_setcanceltype ( int __type , int * __oldtype ) ; # 486 "/usr/include/pthread.h" extern int pthread_cancel ( pthread_t __th ) ; # 491 "/usr/include/pthread.h" extern void pthread_testcancel ( void ) ; # 495 "/usr/include/pthread.h" # 497 "/usr/include/pthread.h" typedef struct { struct { __jmp_buf __cancel_jmp_buf ; int __mask_was_saved ; } __cancel_jmp_buf [ 1 ] ; void * __pad [ 4 ] ; } __pthread_unwind_buf_t __attribute__ ( ( __aligned__ ) ) ; # 507 "/usr/include/pthread.h" # 513 "/usr/include/pthread.h" struct __pthread_cleanup_frame { void ( * __cancel_routine ) ( void * ) ; void * __cancel_arg ; int __do_it ; int __cancel_type ; } ; # 637 "/usr/include/pthread.h" # 654 "/usr/include/pthread.h" extern void __pthread_register_cancel ( __pthread_unwind_buf_t * __buf ) ; # 658 "/usr/include/pthread.h" # 666 "/usr/include/pthread.h" extern void __pthread_unregister_cancel ( __pthread_unwind_buf_t * __buf ) ; # 706 "/usr/include/pthread.h" extern void __pthread_unwind_next ( __pthread_unwind_buf_t * __buf ) __attribute__ ( ( __noreturn__ ) ) # 710 "/usr/include/pthread.h" __attribute__ ( ( __weak__ ) ) # 712 "/usr/include/pthread.h" ; # 715 "/usr/include/pthread.h" struct __jmp_buf_tag ; extern int __sigsetjmp ( struct __jmp_buf_tag * __env , int __savemask ) ; # 720 "/usr/include/pthread.h" # 722 "/usr/include/pthread.h" extern int pthread_mutex_init ( pthread_mutex_t * __mutex , const pthread_mutexattr_t * __mutexattr ) ; # 727 "/usr/include/pthread.h" extern int pthread_mutex_destroy ( pthread_mutex_t * __mutex ) ; # 731 "/usr/include/pthread.h" extern int pthread_mutex_trylock ( pthread_mutex_t * __mutex ) ; # 735 "/usr/include/pthread.h" extern int pthread_mutex_lock ( pthread_mutex_t * __mutex ) ; # 740 "/usr/include/pthread.h" extern int pthread_mutex_timedlock ( pthread_mutex_t * __restrict __mutex , const struct timespec * __restrict __abstime ) ; # 746 "/usr/include/pthread.h" extern int pthread_mutex_unlock ( pthread_mutex_t * __mutex ) ; # 768 "/usr/include/pthread.h" extern int pthread_mutex_consistent_np ( pthread_mutex_t * __mutex ) ; # 778 "/usr/include/pthread.h" # 781 "/usr/include/pthread.h" extern int pthread_mutexattr_init ( pthread_mutexattr_t * __attr ) ; # 785 "/usr/include/pthread.h" extern int pthread_mutexattr_destroy ( pthread_mutexattr_t * __attr ) ; # 789 "/usr/include/pthread.h" extern int pthread_mutexattr_getpshared ( const pthread_mutexattr_t * __restrict __attr , int * __restrict __pshared ) ; # 795 "/usr/include/pthread.h" extern int pthread_mutexattr_setpshared ( pthread_mutexattr_t * __attr , int __pshared ) ; # 837 "/usr/include/pthread.h" extern int pthread_mutexattr_getrobust ( const pthread_mutexattr_t * __attr , int * __robustness ) ; # 847 "/usr/include/pthread.h" extern int pthread_mutexattr_setrobust ( pthread_mutexattr_t * __attr , int __robustness ) ; # 860 "/usr/include/pthread.h" # 863 "/usr/include/pthread.h" extern int pthread_rwlock_init ( pthread_rwlock_t * __restrict __rwlock , const pthread_rwlockattr_t * __restrict __attr ) ; # 868 "/usr/include/pthread.h" extern int pthread_rwlock_destroy ( pthread_rwlock_t * __rwlock ) ; # 872 "/usr/include/pthread.h" extern int pthread_rwlock_rdlock ( pthread_rwlock_t * __rwlock ) ; # 876 "/usr/include/pthread.h" extern int pthread_rwlock_tryrdlock ( pthread_rwlock_t * __rwlock ) ; # 881 "/usr/include/pthread.h" extern int pthread_rwlock_timedrdlock ( pthread_rwlock_t * __restrict __rwlock , const struct timespec * __restrict __abstime ) ; # 887 "/usr/include/pthread.h" extern int pthread_rwlock_wrlock ( pthread_rwlock_t * __rwlock ) ; # 891 "/usr/include/pthread.h" extern int pthread_rwlock_trywrlock ( pthread_rwlock_t * __rwlock ) ; # 896 "/usr/include/pthread.h" extern int pthread_rwlock_timedwrlock ( pthread_rwlock_t * __restrict __rwlock , const struct timespec * __restrict __abstime ) ; # 902 "/usr/include/pthread.h" extern int pthread_rwlock_unlock ( pthread_rwlock_t * __rwlock ) ; # 907 "/usr/include/pthread.h" # 909 "/usr/include/pthread.h" extern int pthread_rwlockattr_init ( pthread_rwlockattr_t * __attr ) ; # 913 "/usr/include/pthread.h" extern int pthread_rwlockattr_destroy ( pthread_rwlockattr_t * __attr ) ; # 917 "/usr/include/pthread.h" extern int pthread_rwlockattr_getpshared ( const pthread_rwlockattr_t * __restrict __attr , int * __restrict __pshared ) ; # 923 "/usr/include/pthread.h" extern int pthread_rwlockattr_setpshared ( pthread_rwlockattr_t * __attr , int __pshared ) ; # 928 "/usr/include/pthread.h" extern int pthread_rwlockattr_getkind_np ( const pthread_rwlockattr_t * __restrict __attr , int * __restrict __pref ) ; # 934 "/usr/include/pthread.h" extern int pthread_rwlockattr_setkind_np ( pthread_rwlockattr_t * __attr , int __pref ) ; # 940 "/usr/include/pthread.h" # 943 "/usr/include/pthread.h" extern int pthread_cond_init ( pthread_cond_t * __restrict __cond , const pthread_condattr_t * __restrict __cond_attr ) ; # 948 "/usr/include/pthread.h" extern int pthread_cond_destroy ( pthread_cond_t * __cond ) ; # 952 "/usr/include/pthread.h" extern int pthread_cond_signal ( pthread_cond_t * __cond ) ; # 956 "/usr/include/pthread.h" extern int pthread_cond_broadcast ( pthread_cond_t * __cond ) ; # 964 "/usr/include/pthread.h" extern int pthread_cond_wait ( pthread_cond_t * __restrict __cond , pthread_mutex_t * __restrict __mutex ) ; # 975 "/usr/include/pthread.h" extern int pthread_cond_timedwait ( pthread_cond_t * __restrict __cond , pthread_mutex_t * __restrict __mutex , const struct timespec * __restrict __abstime ) ; # 981 "/usr/include/pthread.h" # 983 "/usr/include/pthread.h" extern int pthread_condattr_init ( pthread_condattr_t * __attr ) ; # 987 "/usr/include/pthread.h" extern int pthread_condattr_destroy ( pthread_condattr_t * __attr ) ; # 991 "/usr/include/pthread.h" extern int pthread_condattr_getpshared ( const pthread_condattr_t * __restrict __attr , int * __restrict __pshared ) ; # 997 "/usr/include/pthread.h" extern int pthread_condattr_setpshared ( pthread_condattr_t * __attr , int __pshared ) ; # 1002 "/usr/include/pthread.h" extern int pthread_condattr_getclock ( const pthread_condattr_t * __restrict __attr , __clockid_t * __restrict __clock_id ) ; # 1008 "/usr/include/pthread.h" extern int pthread_condattr_setclock ( pthread_condattr_t * __attr , __clockid_t __clock_id ) ; # 1016 "/usr/include/pthread.h" # 1019 "/usr/include/pthread.h" extern int pthread_spin_init ( pthread_spinlock_t * __lock , int __pshared ) ; # 1023 "/usr/include/pthread.h" extern int pthread_spin_destroy ( pthread_spinlock_t * __lock ) ; # 1027 "/usr/include/pthread.h" extern int pthread_spin_lock ( pthread_spinlock_t * __lock ) ; # 1031 "/usr/include/pthread.h" extern int pthread_spin_trylock ( pthread_spinlock_t * __lock ) ; # 1035 "/usr/include/pthread.h" extern int pthread_spin_unlock ( pthread_spinlock_t * __lock ) ; # 1040 "/usr/include/pthread.h" # 1043 "/usr/include/pthread.h" extern int pthread_barrier_init ( pthread_barrier_t * __restrict __barrier , const pthread_barrierattr_t * __restrict __attr , unsigned int __count ) ; # 1049 "/usr/include/pthread.h" extern int pthread_barrier_destroy ( pthread_barrier_t * __barrier ) ; # 1053 "/usr/include/pthread.h" extern int pthread_barrier_wait ( pthread_barrier_t * __barrier ) ; # 1058 "/usr/include/pthread.h" extern int pthread_barrierattr_init ( pthread_barrierattr_t * __attr ) ; # 1062 "/usr/include/pthread.h" extern int pthread_barrierattr_destroy ( pthread_barrierattr_t * __attr ) ; # 1066 "/usr/include/pthread.h" extern int pthread_barrierattr_getpshared ( const pthread_barrierattr_t * __restrict __attr , int * __restrict __pshared ) ; # 1072 "/usr/include/pthread.h" extern int pthread_barrierattr_setpshared ( pthread_barrierattr_t * __attr , int __pshared ) ; # 1079 "/usr/include/pthread.h" # 1086 "/usr/include/pthread.h" extern int pthread_key_create ( pthread_key_t * __key , void ( * __destr_function ) ( void * ) ) ; # 1091 "/usr/include/pthread.h" extern int pthread_key_delete ( pthread_key_t __key ) ; # 1094 "/usr/include/pthread.h" extern void * pthread_getspecific ( pthread_key_t __key ) ; # 1097 "/usr/include/pthread.h" extern int pthread_setspecific ( pthread_key_t __key , const void * __pointer ) ; # 1103 "/usr/include/pthread.h" extern int pthread_getcpuclockid ( pthread_t __thread_id , __clockid_t * __clock_id ) ; # 1119 "/usr/include/pthread.h" # 1121 "/usr/include/pthread.h" extern int pthread_atfork ( void ( * __prepare ) ( void ) , void ( * __parent ) ( void ) , void ( * __child ) ( void ) ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.headers/conftest.c" Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in [] Popping language C Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST configureLibrary from config.packages.pthread(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/packages/pthread.py:19) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:19) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for headers Compiler specific search PTHREAD: [] ================================================================================ TEST checkInclude from config.headers(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths All intermediate test results are stored in /tmp/scratch/petsc-kMEe3S/config.packages.pthread Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/config.packages.pthread -I/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: cc -c -o /tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.o -I/tmp/scratch/petsc-kMEe3S/config.compilers -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.headers -I/tmp/scratch/petsc-kMEe3S/config.utilities.closure -I/tmp/scratch/petsc-kMEe3S/config.utilities.cacheDetails -I/tmp/scratch/petsc-kMEe3S/config.atomics -I/tmp/scratch/petsc-kMEe3S/config.functions -I/tmp/scratch/petsc-kMEe3S/config.utilities.featureTestMacros -I/tmp/scratch/petsc-kMEe3S/config.utilities.missing -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.libraries -I/tmp/scratch/petsc-kMEe3S/PETSc.options.scalarTypes -I/tmp/scratch/petsc-kMEe3S/config.packages.pthread -mp -fast /tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Executing: cc -E -I/tmp/scratch/petsc-kMEe3S/config.setCompilers -I/tmp/scratch/petsc-kMEe3S/config.types -I/tmp/scratch/petsc-kMEe3S/config.packages.MPI -I/tmp/scratch/petsc-kMEe3S/config.packages.pthread -I/tmp/scratch/petsc-kMEe3S/config.headers /tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.c stdout: # 1 "/tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.packages.pthread/confdefs.h" # 2 "/tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.c" # 1 "/tmp/scratch/petsc-kMEe3S/config.packages.pthread/conffix.h" # 3 "/tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.c" # 1 "/usr/include/sys/sysctl.h" # 17 "/usr/include/sys/sysctl.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 23 "/usr/include/sys/sysctl.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 25 "/usr/include/sys/sysctl.h" # 25 "/usr/include/sys/sysctl.h" # 1 "/usr/include/linux/sysctl.h" # 23 "/usr/include/linux/sysctl.h" # 1 "/usr/include/linux/kernel.h" # 29 "/usr/include/linux/sysctl.h" # 1 "/usr/include/linux/types.h" # 30 "/usr/include/linux/sysctl.h" # 32 "/usr/include/linux/sysctl.h" struct completion ; # 39 "/usr/include/linux/sysctl.h" struct __sysctl_args { int * name ; int nlen ; void * oldval ; size_t * oldlenp ; void * newval ; size_t newlen ; unsigned long __unused [ 4 ] ; } ; # 49 "/usr/include/linux/sysctl.h" # 51 "/usr/include/linux/sysctl.h" # 53 "/usr/include/linux/sysctl.h" # 55 "/usr/include/linux/sysctl.h" enum { CTL_KERN = 1 , CTL_VM = 2 , CTL_NET = 3 , CTL_PROC = 4 , CTL_FS = 5 , CTL_DEBUG = 6 , CTL_DEV = 7 , CTL_BUS = 8 , CTL_ABI = 9 , CTL_CPU = 10 , CTL_ARLAN = 254 , CTL_S390DBF = 5677 , CTL_SUNRPC = 7249 , CTL_PM = 9899 , CTL_FRV = 9898 , } ; # 74 "/usr/include/linux/sysctl.h" enum { CTL_BUS_ISA = 1 } ; # 80 "/usr/include/linux/sysctl.h" enum { INOTIFY_MAX_USER_INSTANCES = 1 , INOTIFY_MAX_USER_WATCHES = 2 , INOTIFY_MAX_QUEUED_EVENTS = 3 } ; # 88 "/usr/include/linux/sysctl.h" enum { KERN_OSTYPE = 1 , KERN_OSRELEASE = 2 , KERN_OSREV = 3 , KERN_VERSION = 4 , KERN_SECUREMASK = 5 , KERN_PROF = 6 , KERN_NODENAME = 7 , KERN_DOMAINNAME = 8 , # 100 "/usr/include/linux/sysctl.h" KERN_PANIC = 15 , KERN_REALROOTDEV = 16 , # 103 "/usr/include/linux/sysctl.h" KERN_SPARC_REBOOT = 21 , KERN_CTLALTDEL = 22 , KERN_PRINTK = 23 , KERN_NAMETRANS = 24 , KERN_PPC_HTABRECLAIM = 25 , KERN_PPC_ZEROPAGED = 26 , KERN_PPC_POWERSAVE_NAP = 27 , KERN_MODPROBE = 28 , KERN_SG_BIG_BUFF = 29 , KERN_ACCT = 30 , KERN_PPC_L2CR = 31 , # 115 "/usr/include/linux/sysctl.h" KERN_RTSIGNR = 32 , KERN_RTSIGMAX = 33 , KERN_SHMMAX = 34 , KERN_MSGMAX = 35 , KERN_MSGMNB = 36 , KERN_MSGPOOL = 37 , KERN_SYSRQ = 38 , KERN_MAX_THREADS = 39 , KERN_RANDOM = 40 , KERN_SHMALL = 41 , KERN_MSGMNI = 42 , KERN_SEM = 43 , KERN_SPARC_STOP_A = 44 , KERN_SHMMNI = 45 , KERN_OVERFLOWUID = 46 , KERN_OVERFLOWGID = 47 , KERN_SHMPATH = 48 , KERN_HOTPLUG = 49 , KERN_IEEE_EMULATION_WARNINGS = 50 , KERN_S390_USER_DEBUG_LOGGING = 51 , KERN_CORE_USES_PID = 52 , KERN_TAINTED = 53 , KERN_CADPID = 54 , KERN_PIDMAX = 55 , KERN_CORE_PATTERN = 56 , KERN_PANIC_ON_OOPS = 57 , KERN_HPPA_PWRSW = 58 , KERN_HPPA_UNALIGNED = 59 , KERN_PRINTK_RATELIMIT = 60 , KERN_PRINTK_RATELIMIT_BURST = 61 , KERN_PTY = 62 , KERN_NGROUPS_MAX = 63 , KERN_SPARC_SCONS_PWROFF = 64 , KERN_HZ_TIMER = 65 , KERN_UNKNOWN_NMI_PANIC = 66 , KERN_BOOTLOADER_TYPE = 67 , KERN_RANDOMIZE = 68 , KERN_SETUID_DUMPABLE = 69 , KERN_SPIN_RETRY = 70 , KERN_ACPI_VIDEO_FLAGS = 71 , KERN_IA64_UNALIGNED = 72 , KERN_COMPAT_LOG = 73 , KERN_MAX_LOCK_DEPTH = 74 , KERN_NMI_WATCHDOG = 75 , KERN_PANIC_ON_NMI = 76 , } ; # 165 "/usr/include/linux/sysctl.h" enum { VM_UNUSED1 = 1 , VM_UNUSED2 = 2 , VM_UNUSED3 = 3 , VM_UNUSED4 = 4 , VM_OVERCOMMIT_MEMORY = 5 , VM_UNUSED5 = 6 , VM_UNUSED7 = 7 , VM_UNUSED8 = 8 , VM_UNUSED9 = 9 , VM_PAGE_CLUSTER = 10 , VM_DIRTY_BACKGROUND = 11 , VM_DIRTY_RATIO = 12 , VM_DIRTY_WB_CS = 13 , VM_DIRTY_EXPIRE_CS = 14 , VM_NR_PDFLUSH_THREADS = 15 , VM_OVERCOMMIT_RATIO = 16 , VM_PAGEBUF = 17 , VM_HUGETLB_PAGES = 18 , VM_SWAPPINESS = 19 , VM_LOWMEM_RESERVE_RATIO = 20 , VM_MIN_FREE_KBYTES = 21 , VM_MAX_MAP_COUNT = 22 , VM_LAPTOP_MODE = 23 , VM_BLOCK_DUMP = 24 , VM_HUGETLB_GROUP = 25 , VM_VFS_CACHE_PRESSURE = 26 , VM_LEGACY_VA_LAYOUT = 27 , VM_SWAP_TOKEN_TIMEOUT = 28 , VM_DROP_PAGECACHE = 29 , VM_PERCPU_PAGELIST_FRACTION = 30 , VM_ZONE_RECLAIM_MODE = 31 , VM_MIN_UNMAPPED = 32 , VM_PANIC_ON_OOM = 33 , VM_VDSO_ENABLED = 34 , VM_MIN_SLAB = 35 , } ; # 206 "/usr/include/linux/sysctl.h" enum { NET_CORE = 1 , NET_ETHER = 2 , NET_802 = 3 , NET_UNIX = 4 , NET_IPV4 = 5 , NET_IPX = 6 , NET_ATALK = 7 , NET_NETROM = 8 , NET_AX25 = 9 , NET_BRIDGE = 10 , NET_ROSE = 11 , NET_IPV6 = 12 , NET_X25 = 13 , NET_TR = 14 , NET_DECNET = 15 , NET_ECONET = 16 , NET_SCTP = 17 , NET_LLC = 18 , NET_NETFILTER = 19 , NET_DCCP = 20 , NET_IRDA = 412 , } ; # 232 "/usr/include/linux/sysctl.h" enum { RANDOM_POOLSIZE = 1 , RANDOM_ENTROPY_COUNT = 2 , RANDOM_READ_THRESH = 3 , RANDOM_WRITE_THRESH = 4 , RANDOM_BOOT_ID = 5 , RANDOM_UUID = 6 } ; # 243 "/usr/include/linux/sysctl.h" enum { PTY_MAX = 1 , PTY_NR = 2 } ; # 250 "/usr/include/linux/sysctl.h" enum { BUS_ISA_MEM_BASE = 1 , BUS_ISA_PORT_BASE = 2 , BUS_ISA_PORT_SHIFT = 3 } ; # 258 "/usr/include/linux/sysctl.h" enum { NET_CORE_WMEM_MAX = 1 , NET_CORE_RMEM_MAX = 2 , NET_CORE_WMEM_DEFAULT = 3 , NET_CORE_RMEM_DEFAULT = 4 , NET_CORE_MAX_BACKLOG = 6 , NET_CORE_FASTROUTE = 7 , NET_CORE_MSG_COST = 8 , NET_CORE_MSG_BURST = 9 , NET_CORE_OPTMEM_MAX = 10 , NET_CORE_HOT_LIST_LENGTH = 11 , NET_CORE_DIVERT_VERSION = 12 , NET_CORE_NO_CONG_THRESH = 13 , NET_CORE_NO_CONG = 14 , NET_CORE_LO_CONG = 15 , NET_CORE_MOD_CONG = 16 , NET_CORE_DEV_WEIGHT = 17 , NET_CORE_SOMAXCONN = 18 , NET_CORE_BUDGET = 19 , NET_CORE_AEVENT_ETIME = 20 , NET_CORE_AEVENT_RSEQTH = 21 , NET_CORE_WARNINGS = 22 , } ; # 285 "/usr/include/linux/sysctl.h" # 287 "/usr/include/linux/sysctl.h" # 289 "/usr/include/linux/sysctl.h" # 291 "/usr/include/linux/sysctl.h" enum { NET_UNIX_DESTROY_DELAY = 1 , NET_UNIX_DELETE_DELAY = 2 , NET_UNIX_MAX_DGRAM_QLEN = 3 , } ; # 298 "/usr/include/linux/sysctl.h" enum { NET_NF_CONNTRACK_MAX = 1 , NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT = 2 , NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV = 3 , NET_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED = 4 , NET_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT = 5 , NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT = 6 , NET_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK = 7 , NET_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT = 8 , NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE = 9 , NET_NF_CONNTRACK_UDP_TIMEOUT = 10 , NET_NF_CONNTRACK_UDP_TIMEOUT_STREAM = 11 , NET_NF_CONNTRACK_ICMP_TIMEOUT = 12 , NET_NF_CONNTRACK_GENERIC_TIMEOUT = 13 , NET_NF_CONNTRACK_BUCKETS = 14 , NET_NF_CONNTRACK_LOG_INVALID = 15 , NET_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS = 16 , NET_NF_CONNTRACK_TCP_LOOSE = 17 , NET_NF_CONNTRACK_TCP_BE_LIBERAL = 18 , NET_NF_CONNTRACK_TCP_MAX_RETRANS = 19 , NET_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED = 20 , NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT = 21 , NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED = 22 , NET_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED = 23 , NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT = 24 , NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD = 25 , NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT = 26 , NET_NF_CONNTRACK_COUNT = 27 , NET_NF_CONNTRACK_ICMPV6_TIMEOUT = 28 , NET_NF_CONNTRACK_FRAG6_TIMEOUT = 29 , NET_NF_CONNTRACK_FRAG6_LOW_THRESH = 30 , NET_NF_CONNTRACK_FRAG6_HIGH_THRESH = 31 , NET_NF_CONNTRACK_CHECKSUM = 32 , } ; # 335 "/usr/include/linux/sysctl.h" enum { NET_IPV4_FORWARD = 8 , NET_IPV4_DYNADDR = 9 , # 342 "/usr/include/linux/sysctl.h" NET_IPV4_CONF = 16 , NET_IPV4_NEIGH = 17 , NET_IPV4_ROUTE = 18 , NET_IPV4_FIB_HASH = 19 , NET_IPV4_NETFILTER = 20 , # 348 "/usr/include/linux/sysctl.h" NET_IPV4_TCP_TIMESTAMPS = 33 , NET_IPV4_TCP_WINDOW_SCALING = 34 , NET_IPV4_TCP_SACK = 35 , NET_IPV4_TCP_RETRANS_COLLAPSE = 36 , NET_IPV4_DEFAULT_TTL = 37 , NET_IPV4_AUTOCONFIG = 38 , NET_IPV4_NO_PMTU_DISC = 39 , NET_IPV4_TCP_SYN_RETRIES = 40 , NET_IPV4_IPFRAG_HIGH_THRESH = 41 , NET_IPV4_IPFRAG_LOW_THRESH = 42 , NET_IPV4_IPFRAG_TIME = 43 , NET_IPV4_TCP_MAX_KA_PROBES = 44 , NET_IPV4_TCP_KEEPALIVE_TIME = 45 , NET_IPV4_TCP_KEEPALIVE_PROBES = 46 , NET_IPV4_TCP_RETRIES1 = 47 , NET_IPV4_TCP_RETRIES2 = 48 , NET_IPV4_TCP_FIN_TIMEOUT = 49 , NET_IPV4_IP_MASQ_DEBUG = 50 , NET_TCP_SYNCOOKIES = 51 , NET_TCP_STDURG = 52 , NET_TCP_RFC1337 = 53 , NET_TCP_SYN_TAILDROP = 54 , NET_TCP_MAX_SYN_BACKLOG = 55 , NET_IPV4_LOCAL_PORT_RANGE = 56 , NET_IPV4_ICMP_ECHO_IGNORE_ALL = 57 , NET_IPV4_ICMP_ECHO_IGNORE_BROADCASTS = 58 , NET_IPV4_ICMP_SOURCEQUENCH_RATE = 59 , NET_IPV4_ICMP_DESTUNREACH_RATE = 60 , NET_IPV4_ICMP_TIMEEXCEED_RATE = 61 , NET_IPV4_ICMP_PARAMPROB_RATE = 62 , NET_IPV4_ICMP_ECHOREPLY_RATE = 63 , NET_IPV4_ICMP_IGNORE_BOGUS_ERROR_RESPONSES = 64 , NET_IPV4_IGMP_MAX_MEMBERSHIPS = 65 , NET_TCP_TW_RECYCLE = 66 , NET_IPV4_ALWAYS_DEFRAG = 67 , NET_IPV4_TCP_KEEPALIVE_INTVL = 68 , NET_IPV4_INET_PEER_THRESHOLD = 69 , NET_IPV4_INET_PEER_MINTTL = 70 , NET_IPV4_INET_PEER_MAXTTL = 71 , NET_IPV4_INET_PEER_GC_MINTIME = 72 , NET_IPV4_INET_PEER_GC_MAXTIME = 73 , NET_TCP_ORPHAN_RETRIES = 74 , NET_TCP_ABORT_ON_OVERFLOW = 75 , NET_TCP_SYNACK_RETRIES = 76 , NET_TCP_MAX_ORPHANS = 77 , NET_TCP_MAX_TW_BUCKETS = 78 , NET_TCP_FACK = 79 , NET_TCP_REORDERING = 80 , NET_TCP_ECN = 81 , NET_TCP_DSACK = 82 , NET_TCP_MEM = 83 , NET_TCP_WMEM = 84 , NET_TCP_RMEM = 85 , NET_TCP_APP_WIN = 86 , NET_TCP_ADV_WIN_SCALE = 87 , NET_IPV4_NONLOCAL_BIND = 88 , NET_IPV4_ICMP_RATELIMIT = 89 , NET_IPV4_ICMP_RATEMASK = 90 , NET_TCP_TW_REUSE = 91 , NET_TCP_FRTO = 92 , NET_TCP_LOW_LATENCY = 93 , NET_IPV4_IPFRAG_SECRET_INTERVAL = 94 , NET_IPV4_IGMP_MAX_MSF = 96 , NET_TCP_NO_METRICS_SAVE = 97 , NET_TCP_DEFAULT_WIN_SCALE = 105 , NET_TCP_MODERATE_RCVBUF = 106 , NET_TCP_TSO_WIN_DIVISOR = 107 , NET_TCP_BIC_BETA = 108 , NET_IPV4_ICMP_ERRORS_USE_INBOUND_IFADDR = 109 , NET_TCP_CONG_CONTROL = 110 , NET_TCP_ABC = 111 , NET_IPV4_IPFRAG_MAX_DIST = 112 , NET_TCP_MTU_PROBING = 113 , NET_TCP_BASE_MSS = 114 , NET_IPV4_TCP_WORKAROUND_SIGNED_WINDOWS = 115 , NET_TCP_DMA_COPYBREAK = 116 , NET_TCP_SLOW_START_AFTER_IDLE = 117 , NET_CIPSOV4_CACHE_ENABLE = 118 , NET_CIPSOV4_CACHE_BUCKET_SIZE = 119 , NET_CIPSOV4_RBM_OPTFMT = 120 , NET_CIPSOV4_RBM_STRICTVALID = 121 , NET_TCP_AVAIL_CONG_CONTROL = 122 , NET_TCP_ALLOWED_CONG_CONTROL = 123 , NET_TCP_MAX_SSTHRESH = 124 , NET_TCP_FRTO_RESPONSE = 125 , } ; # 435 "/usr/include/linux/sysctl.h" enum { NET_IPV4_ROUTE_FLUSH = 1 , NET_IPV4_ROUTE_MIN_DELAY = 2 , NET_IPV4_ROUTE_MAX_DELAY = 3 , NET_IPV4_ROUTE_GC_THRESH = 4 , NET_IPV4_ROUTE_MAX_SIZE = 5 , NET_IPV4_ROUTE_GC_MIN_INTERVAL = 6 , NET_IPV4_ROUTE_GC_TIMEOUT = 7 , NET_IPV4_ROUTE_GC_INTERVAL = 8 , NET_IPV4_ROUTE_REDIRECT_LOAD = 9 , NET_IPV4_ROUTE_REDIRECT_NUMBER = 10 , NET_IPV4_ROUTE_REDIRECT_SILENCE = 11 , NET_IPV4_ROUTE_ERROR_COST = 12 , NET_IPV4_ROUTE_ERROR_BURST = 13 , NET_IPV4_ROUTE_GC_ELASTICITY = 14 , NET_IPV4_ROUTE_MTU_EXPIRES = 15 , NET_IPV4_ROUTE_MIN_PMTU = 16 , NET_IPV4_ROUTE_MIN_ADVMSS = 17 , NET_IPV4_ROUTE_SECRET_INTERVAL = 18 , NET_IPV4_ROUTE_GC_MIN_INTERVAL_MS = 19 , } ; # 457 "/usr/include/linux/sysctl.h" enum { NET_PROTO_CONF_ALL = - 2 , NET_PROTO_CONF_DEFAULT = - 3 # 462 "/usr/include/linux/sysctl.h" } ; # 465 "/usr/include/linux/sysctl.h" enum { NET_IPV4_CONF_FORWARDING = 1 , NET_IPV4_CONF_MC_FORWARDING = 2 , NET_IPV4_CONF_PROXY_ARP = 3 , NET_IPV4_CONF_ACCEPT_REDIRECTS = 4 , NET_IPV4_CONF_SECURE_REDIRECTS = 5 , NET_IPV4_CONF_SEND_REDIRECTS = 6 , NET_IPV4_CONF_SHARED_MEDIA = 7 , NET_IPV4_CONF_RP_FILTER = 8 , NET_IPV4_CONF_ACCEPT_SOURCE_ROUTE = 9 , NET_IPV4_CONF_BOOTP_RELAY = 10 , NET_IPV4_CONF_LOG_MARTIANS = 11 , NET_IPV4_CONF_TAG = 12 , NET_IPV4_CONF_ARPFILTER = 13 , NET_IPV4_CONF_MEDIUM_ID = 14 , NET_IPV4_CONF_NOXFRM = 15 , NET_IPV4_CONF_NOPOLICY = 16 , NET_IPV4_CONF_FORCE_IGMP_VERSION = 17 , NET_IPV4_CONF_ARP_ANNOUNCE = 18 , NET_IPV4_CONF_ARP_IGNORE = 19 , NET_IPV4_CONF_PROMOTE_SECONDARIES = 20 , NET_IPV4_CONF_ARP_ACCEPT = 21 , NET_IPV4_CONF_ARP_NOTIFY = 22 , __NET_IPV4_CONF_MAX } ; # 492 "/usr/include/linux/sysctl.h" enum { NET_IPV4_NF_CONNTRACK_MAX = 1 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT = 2 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV = 3 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED = 4 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT = 5 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT = 6 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK = 7 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT = 8 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE = 9 , NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT = 10 , NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT_STREAM = 11 , NET_IPV4_NF_CONNTRACK_ICMP_TIMEOUT = 12 , NET_IPV4_NF_CONNTRACK_GENERIC_TIMEOUT = 13 , NET_IPV4_NF_CONNTRACK_BUCKETS = 14 , NET_IPV4_NF_CONNTRACK_LOG_INVALID = 15 , NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS = 16 , NET_IPV4_NF_CONNTRACK_TCP_LOOSE = 17 , NET_IPV4_NF_CONNTRACK_TCP_BE_LIBERAL = 18 , NET_IPV4_NF_CONNTRACK_TCP_MAX_RETRANS = 19 , NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED = 20 , NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT = 21 , NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED = 22 , NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED = 23 , NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT = 24 , NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD = 25 , NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT = 26 , NET_IPV4_NF_CONNTRACK_COUNT = 27 , NET_IPV4_NF_CONNTRACK_CHECKSUM = 28 , } ; enum { NET_IPV6_CONF = 16 , NET_IPV6_NEIGH = 17 , NET_IPV6_ROUTE = 18 , NET_IPV6_ICMP = 19 , NET_IPV6_BINDV6ONLY = 20 , NET_IPV6_IP6FRAG_HIGH_THRESH = 21 , NET_IPV6_IP6FRAG_LOW_THRESH = 22 , NET_IPV6_IP6FRAG_TIME = 23 , NET_IPV6_IP6FRAG_SECRET_INTERVAL = 24 , NET_IPV6_MLD_MAX_MSF = 25 , } ; # 539 "/usr/include/linux/sysctl.h" enum { NET_IPV6_ROUTE_FLUSH = 1 , NET_IPV6_ROUTE_GC_THRESH = 2 , NET_IPV6_ROUTE_MAX_SIZE = 3 , NET_IPV6_ROUTE_GC_MIN_INTERVAL = 4 , NET_IPV6_ROUTE_GC_TIMEOUT = 5 , NET_IPV6_ROUTE_GC_INTERVAL = 6 , NET_IPV6_ROUTE_GC_ELASTICITY = 7 , NET_IPV6_ROUTE_MTU_EXPIRES = 8 , NET_IPV6_ROUTE_MIN_ADVMSS = 9 , NET_IPV6_ROUTE_GC_MIN_INTERVAL_MS = 10 } ; # 552 "/usr/include/linux/sysctl.h" enum { NET_IPV6_FORWARDING = 1 , NET_IPV6_HOP_LIMIT = 2 , NET_IPV6_MTU = 3 , NET_IPV6_ACCEPT_RA = 4 , NET_IPV6_ACCEPT_REDIRECTS = 5 , NET_IPV6_AUTOCONF = 6 , NET_IPV6_DAD_TRANSMITS = 7 , NET_IPV6_RTR_SOLICITS = 8 , NET_IPV6_RTR_SOLICIT_INTERVAL = 9 , NET_IPV6_RTR_SOLICIT_DELAY = 10 , NET_IPV6_USE_TEMPADDR = 11 , NET_IPV6_TEMP_VALID_LFT = 12 , NET_IPV6_TEMP_PREFERED_LFT = 13 , NET_IPV6_REGEN_MAX_RETRY = 14 , NET_IPV6_MAX_DESYNC_FACTOR = 15 , NET_IPV6_MAX_ADDRESSES = 16 , NET_IPV6_FORCE_MLD_VERSION = 17 , NET_IPV6_ACCEPT_RA_DEFRTR = 18 , NET_IPV6_ACCEPT_RA_PINFO = 19 , NET_IPV6_ACCEPT_RA_RTR_PREF = 20 , NET_IPV6_RTR_PROBE_INTERVAL = 21 , NET_IPV6_ACCEPT_RA_RT_INFO_MAX_PLEN = 22 , NET_IPV6_PROXY_NDP = 23 , NET_IPV6_ACCEPT_SOURCE_ROUTE = 25 , __NET_IPV6_MAX } ; # 580 "/usr/include/linux/sysctl.h" enum { NET_IPV6_ICMP_RATELIMIT = 1 } ; # 585 "/usr/include/linux/sysctl.h" enum { NET_NEIGH_MCAST_SOLICIT = 1 , NET_NEIGH_UCAST_SOLICIT = 2 , NET_NEIGH_APP_SOLICIT = 3 , NET_NEIGH_RETRANS_TIME = 4 , NET_NEIGH_REACHABLE_TIME = 5 , NET_NEIGH_DELAY_PROBE_TIME = 6 , NET_NEIGH_GC_STALE_TIME = 7 , NET_NEIGH_UNRES_QLEN = 8 , NET_NEIGH_PROXY_QLEN = 9 , NET_NEIGH_ANYCAST_DELAY = 10 , NET_NEIGH_PROXY_DELAY = 11 , NET_NEIGH_LOCKTIME = 12 , NET_NEIGH_GC_INTERVAL = 13 , NET_NEIGH_GC_THRESH1 = 14 , NET_NEIGH_GC_THRESH2 = 15 , NET_NEIGH_GC_THRESH3 = 16 , NET_NEIGH_RETRANS_TIME_MS = 17 , NET_NEIGH_REACHABLE_TIME_MS = 18 , __NET_NEIGH_MAX } ; # 608 "/usr/include/linux/sysctl.h" enum { NET_DCCP_DEFAULT = 1 , } ; # 613 "/usr/include/linux/sysctl.h" enum { NET_IPX_PPROP_BROADCASTING = 1 , NET_IPX_FORWARDING = 2 } ; # 619 "/usr/include/linux/sysctl.h" enum { NET_LLC2 = 1 , NET_LLC_STATION = 2 , } ; # 625 "/usr/include/linux/sysctl.h" enum { NET_LLC2_TIMEOUT = 1 , } ; # 630 "/usr/include/linux/sysctl.h" enum { NET_LLC_STATION_ACK_TIMEOUT = 1 , } ; # 635 "/usr/include/linux/sysctl.h" enum { NET_LLC2_ACK_TIMEOUT = 1 , NET_LLC2_P_TIMEOUT = 2 , NET_LLC2_REJ_TIMEOUT = 3 , NET_LLC2_BUSY_TIMEOUT = 4 , } ; # 643 "/usr/include/linux/sysctl.h" enum { NET_ATALK_AARP_EXPIRY_TIME = 1 , NET_ATALK_AARP_TICK_TIME = 2 , NET_ATALK_AARP_RETRANSMIT_LIMIT = 3 , NET_ATALK_AARP_RESOLVE_TIME = 4 } ; # 652 "/usr/include/linux/sysctl.h" enum { NET_NETROM_DEFAULT_PATH_QUALITY = 1 , NET_NETROM_OBSOLESCENCE_COUNT_INITIALISER = 2 , NET_NETROM_NETWORK_TTL_INITIALISER = 3 , NET_NETROM_TRANSPORT_TIMEOUT = 4 , NET_NETROM_TRANSPORT_MAXIMUM_TRIES = 5 , NET_NETROM_TRANSPORT_ACKNOWLEDGE_DELAY = 6 , NET_NETROM_TRANSPORT_BUSY_DELAY = 7 , NET_NETROM_TRANSPORT_REQUESTED_WINDOW_SIZE = 8 , NET_NETROM_TRANSPORT_NO_ACTIVITY_TIMEOUT = 9 , NET_NETROM_ROUTING_CONTROL = 10 , NET_NETROM_LINK_FAILS_COUNT = 11 , NET_NETROM_RESET = 12 } ; # 668 "/usr/include/linux/sysctl.h" enum { NET_AX25_IP_DEFAULT_MODE = 1 , NET_AX25_DEFAULT_MODE = 2 , NET_AX25_BACKOFF_TYPE = 3 , NET_AX25_CONNECT_MODE = 4 , NET_AX25_STANDARD_WINDOW = 5 , NET_AX25_EXTENDED_WINDOW = 6 , NET_AX25_T1_TIMEOUT = 7 , NET_AX25_T2_TIMEOUT = 8 , NET_AX25_T3_TIMEOUT = 9 , NET_AX25_IDLE_TIMEOUT = 10 , NET_AX25_N2 = 11 , NET_AX25_PACLEN = 12 , NET_AX25_PROTOCOL = 13 , NET_AX25_DAMA_SLAVE_TIMEOUT = 14 } ; # 686 "/usr/include/linux/sysctl.h" enum { NET_ROSE_RESTART_REQUEST_TIMEOUT = 1 , NET_ROSE_CALL_REQUEST_TIMEOUT = 2 , NET_ROSE_RESET_REQUEST_TIMEOUT = 3 , NET_ROSE_CLEAR_REQUEST_TIMEOUT = 4 , NET_ROSE_ACK_HOLD_BACK_TIMEOUT = 5 , NET_ROSE_ROUTING_CONTROL = 6 , NET_ROSE_LINK_FAIL_TIMEOUT = 7 , NET_ROSE_MAX_VCS = 8 , NET_ROSE_WINDOW_SIZE = 9 , NET_ROSE_NO_ACTIVITY_TIMEOUT = 10 } ; # 700 "/usr/include/linux/sysctl.h" enum { NET_X25_RESTART_REQUEST_TIMEOUT = 1 , NET_X25_CALL_REQUEST_TIMEOUT = 2 , NET_X25_RESET_REQUEST_TIMEOUT = 3 , NET_X25_CLEAR_REQUEST_TIMEOUT = 4 , NET_X25_ACK_HOLD_BACK_TIMEOUT = 5 , NET_X25_FORWARD = 6 } ; # 710 "/usr/include/linux/sysctl.h" enum { NET_TR_RIF_TIMEOUT = 1 } ; # 716 "/usr/include/linux/sysctl.h" enum { NET_DECNET_NODE_TYPE = 1 , NET_DECNET_NODE_ADDRESS = 2 , NET_DECNET_NODE_NAME = 3 , NET_DECNET_DEFAULT_DEVICE = 4 , NET_DECNET_TIME_WAIT = 5 , NET_DECNET_DN_COUNT = 6 , NET_DECNET_DI_COUNT = 7 , NET_DECNET_DR_COUNT = 8 , NET_DECNET_DST_GC_INTERVAL = 9 , NET_DECNET_CONF = 10 , NET_DECNET_NO_FC_MAX_CWND = 11 , NET_DECNET_MEM = 12 , NET_DECNET_RMEM = 13 , NET_DECNET_WMEM = 14 , NET_DECNET_DEBUG_LEVEL = 255 } ; # 735 "/usr/include/linux/sysctl.h" enum { NET_DECNET_CONF_LOOPBACK = - 2 , NET_DECNET_CONF_DDCMP = - 3 , NET_DECNET_CONF_PPP = - 4 , NET_DECNET_CONF_X25 = - 5 , NET_DECNET_CONF_GRE = - 6 , NET_DECNET_CONF_ETHER = - 7 # 744 "/usr/include/linux/sysctl.h" } ; # 747 "/usr/include/linux/sysctl.h" enum { NET_DECNET_CONF_DEV_PRIORITY = 1 , NET_DECNET_CONF_DEV_T1 = 2 , NET_DECNET_CONF_DEV_T2 = 3 , NET_DECNET_CONF_DEV_T3 = 4 , NET_DECNET_CONF_DEV_FORWARDING = 5 , NET_DECNET_CONF_DEV_BLKSIZE = 6 , NET_DECNET_CONF_DEV_STATE = 7 } ; # 758 "/usr/include/linux/sysctl.h" enum { NET_SCTP_RTO_INITIAL = 1 , NET_SCTP_RTO_MIN = 2 , NET_SCTP_RTO_MAX = 3 , NET_SCTP_RTO_ALPHA = 4 , NET_SCTP_RTO_BETA = 5 , NET_SCTP_VALID_COOKIE_LIFE = 6 , NET_SCTP_ASSOCIATION_MAX_RETRANS = 7 , NET_SCTP_PATH_MAX_RETRANS = 8 , NET_SCTP_MAX_INIT_RETRANSMITS = 9 , NET_SCTP_HB_INTERVAL = 10 , NET_SCTP_PRESERVE_ENABLE = 11 , NET_SCTP_MAX_BURST = 12 , NET_SCTP_ADDIP_ENABLE = 13 , NET_SCTP_PRSCTP_ENABLE = 14 , NET_SCTP_SNDBUF_POLICY = 15 , NET_SCTP_SACK_TIMEOUT = 16 , NET_SCTP_RCVBUF_POLICY = 17 , } ; # 779 "/usr/include/linux/sysctl.h" enum { NET_BRIDGE_NF_CALL_ARPTABLES = 1 , NET_BRIDGE_NF_CALL_IPTABLES = 2 , NET_BRIDGE_NF_CALL_IP6TABLES = 3 , NET_BRIDGE_NF_FILTER_VLAN_TAGGED = 4 , NET_BRIDGE_NF_FILTER_PPPOE_TAGGED = 5 , } ; # 788 "/usr/include/linux/sysctl.h" enum { NET_IRDA_DISCOVERY = 1 , NET_IRDA_DEVNAME = 2 , NET_IRDA_DEBUG = 3 , NET_IRDA_FAST_POLL = 4 , NET_IRDA_DISCOVERY_SLOTS = 5 , NET_IRDA_DISCOVERY_TIMEOUT = 6 , NET_IRDA_SLOT_TIMEOUT = 7 , NET_IRDA_MAX_BAUD_RATE = 8 , NET_IRDA_MIN_TX_TURN_TIME = 9 , NET_IRDA_MAX_TX_DATA_SIZE = 10 , NET_IRDA_MAX_TX_WINDOW = 11 , NET_IRDA_MAX_NOREPLY_TIME = 12 , NET_IRDA_WARN_NOREPLY_TIME = 13 , NET_IRDA_LAP_KEEPALIVE_TIME = 14 , } ; # 807 "/usr/include/linux/sysctl.h" enum { FS_NRINODE = 1 , FS_STATINODE = 2 , FS_MAXINODE = 3 , FS_NRDQUOT = 4 , FS_MAXDQUOT = 5 , FS_NRFILE = 6 , FS_MAXFILE = 7 , FS_DENTRY = 8 , FS_NRSUPER = 9 , FS_MAXSUPER = 10 , FS_OVERFLOWUID = 11 , FS_OVERFLOWGID = 12 , FS_LEASES = 13 , FS_DIR_NOTIFY = 14 , FS_LEASE_TIME = 15 , FS_DQSTATS = 16 , FS_XFS = 17 , FS_AIO_NR = 18 , FS_AIO_MAX_NR = 19 , FS_INOTIFY = 20 , FS_OCFS2 = 988 , } ; # 833 "/usr/include/linux/sysctl.h" enum { FS_DQ_LOOKUPS = 1 , FS_DQ_DROPS = 2 , FS_DQ_READS = 3 , FS_DQ_WRITES = 4 , FS_DQ_CACHE_HITS = 5 , FS_DQ_ALLOCATED = 6 , FS_DQ_FREE = 7 , FS_DQ_SYNCS = 8 , FS_DQ_WARNINGS = 9 , } ; # 846 "/usr/include/linux/sysctl.h" # 848 "/usr/include/linux/sysctl.h" enum { DEV_CDROM = 1 , DEV_HWMON = 2 , DEV_PARPORT = 3 , DEV_RAID = 4 , DEV_MAC_HID = 5 , DEV_SCSI = 6 , DEV_IPMI = 7 , } ; # 859 "/usr/include/linux/sysctl.h" enum { DEV_CDROM_INFO = 1 , DEV_CDROM_AUTOCLOSE = 2 , DEV_CDROM_AUTOEJECT = 3 , DEV_CDROM_DEBUG = 4 , DEV_CDROM_LOCK = 5 , DEV_CDROM_CHECK_MEDIA = 6 } ; # 869 "/usr/include/linux/sysctl.h" enum { DEV_PARPORT_DEFAULT = - 3 } ; # 874 "/usr/include/linux/sysctl.h" enum { DEV_RAID_SPEED_LIMIT_MIN = 1 , DEV_RAID_SPEED_LIMIT_MAX = 2 } ; # 880 "/usr/include/linux/sysctl.h" enum { DEV_PARPORT_DEFAULT_TIMESLICE = 1 , DEV_PARPORT_DEFAULT_SPINTIME = 2 } ; # 886 "/usr/include/linux/sysctl.h" enum { DEV_PARPORT_SPINTIME = 1 , DEV_PARPORT_BASE_ADDR = 2 , DEV_PARPORT_IRQ = 3 , DEV_PARPORT_DMA = 4 , DEV_PARPORT_MODES = 5 , DEV_PARPORT_DEVICES = 6 , DEV_PARPORT_AUTOPROBE = 16 } ; # 897 "/usr/include/linux/sysctl.h" enum { DEV_PARPORT_DEVICES_ACTIVE = - 3 , } ; # 902 "/usr/include/linux/sysctl.h" enum { DEV_PARPORT_DEVICE_TIMESLICE = 1 , } ; # 907 "/usr/include/linux/sysctl.h" enum { DEV_MAC_HID_KEYBOARD_SENDS_LINUX_KEYCODES = 1 , DEV_MAC_HID_KEYBOARD_LOCK_KEYCODES = 2 , DEV_MAC_HID_MOUSE_BUTTON_EMULATION = 3 , DEV_MAC_HID_MOUSE_BUTTON2_KEYCODE = 4 , DEV_MAC_HID_MOUSE_BUTTON3_KEYCODE = 5 , DEV_MAC_HID_ADB_MOUSE_SENDS_KEYCODES = 6 } ; # 917 "/usr/include/linux/sysctl.h" enum { DEV_SCSI_LOGGING_LEVEL = 1 , } ; # 922 "/usr/include/linux/sysctl.h" enum { DEV_IPMI_POWEROFF_POWERCYCLE = 1 , } ; # 927 "/usr/include/linux/sysctl.h" enum { ABI_DEFHANDLER_COFF = 1 , ABI_DEFHANDLER_ELF = 2 , ABI_DEFHANDLER_LCALL7 = 3 , ABI_DEFHANDLER_LIBCSO = 4 , ABI_TRACE = 5 , ABI_FAKE_UTSNAME = 6 , } ; # 45 "/usr/include/sys/sysctl.h" # 66 "/usr/include/sys/sysctl.h" extern int sysctl ( int * __name , int __nlen , void * __oldval , size_t * __oldlenp , void * __newval , size_t __newlen ) ; # 4 "/tmp/scratch/petsc-kMEe3S/config.packages.pthread/conftest.c" Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:625) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:625) By default we don't care about checking if the library is shared ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default Checking for program /ccs/home/adams/git-fat/lgrind...not found Checking for program /opt/cray/llm/default/bin/lgrind...not found Checking for program /opt/cray/llm/default/etc/lgrind...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/sbin/lgrind...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.15.1-1.0502.19897.18.2/bin/lgrind...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/lgrind...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/lgrind...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/lgrind...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/lgrind...not found Checking for program /ccs/home/adams/git-fat/lgrind...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/lgrind...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/lgrind...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/lgrind...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/lgrind...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/lgrind...not found Checking for program /sw/xk6/ddt/4.2.2-39105/sles11.1_binary/bin/lgrind...not found Checking for program /opt/cray/netcdf/4.3.2/bin/lgrind...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/lgrind...not found Checking for program /sw/xk6/altd/bin/lgrind...not found Checking for program /sw/xk6/site-aprun/bin/lgrind...not found Checking for program /sw/xk6/bin/lgrind...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/lgrind...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/lgrind...not found Checking for program /opt/cray/atp/1.7.5/bin/lgrind...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/lgrind...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/lgrind...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/lgrind...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/lgrind...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/lgrind...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/lgrind...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/lgrind...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/lgrind...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/lgrind...not found Checking for program /opt/cray/craype/2.2.1/bin/lgrind...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/lgrind...not found Checking for program /opt/modules/3.2.6.7/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/X11/lgrind...not found Checking for program /usr/X11R6/bin/lgrind...not found Checking for program /usr/games/lgrind...not found Checking for program /opt/bin/lgrind...not found Checking for program /usr/lib/mit/bin/lgrind...not found Checking for program /usr/lib/mit/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /usr/lib/qt3/bin/lgrind...not found Checking for program /opt/cray/bin/lgrind...not found Checking for program /opt/public/bin/lgrind...not found Checking for program /opt/bin/lgrind...not found Checking for program /opt/public/bin/lgrind...not found Checking for program /ccs/home/adams/lgrind...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc/bin/win32fe/lgrind...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:629) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:629) Called if --with-packagename=0; does nothing by default Pushing language C Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/metis-5.1.0-p1.tar.gz to /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/_d_metis-5.1.0-p1.tar.gz Extracting /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/_d_metis-5.1.0-p1.tar.gz Executing: cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages; chmod -R a+r metis-5.1.0-p1;find metis-5.1.0-p1 -type d -name "*" -exec chmod a+rx {} \; Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== You do not have write permissions to the --prefix directory /autofs/na3_home1/adams/petsc_master_opt64idx_pgi You will be prompted for the sudo password for any external package installs =============================================================================== ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make on METIS: Could not execute "cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /usr/bin/gmake -j 5 && sudo /usr/bin/gmake install": /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -H/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1 -B/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_start /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1 /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 2 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 3 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 4 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 5 [ 3%] [ 3%] [ 8%] [ 8%] [ 8%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/mcore.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/mcore.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/mcore.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/io.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/io.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/io.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/blas.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/fkvkselect.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/seq.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/seq.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/seq.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 6 [ 9%] /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 7 [ 11%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/omp.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/omp.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/omp.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 8 Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/random.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/random.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/random.c [ 13%] /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 9 [ 14%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/util.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/util.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/util.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pdb.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/pdb.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/pdb.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 10 [ 16%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/b64.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/b64.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 11 [ 18%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/sort.c.o cd 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-I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/util.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/util.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 41 [ 67%] Building C object libmetis/CMakeFiles/metis.dir/mincover.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H 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CMakeFiles/metis.dir/refine.c.o CMakeFiles/metis.dir/srefine.c.o CMakeFiles/metis.dir/compress.c.o CMakeFiles/metis.dir/gklib.c.o CMakeFiles/metis.dir/graph.c.o CMakeFiles/metis.dir/auxapi.c.o CMakeFiles/metis.dir/options.c.o /usr/bin/ranlib libmetis.a gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 [100%] Built target metis gmake[1]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_start /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 0 We trust you have received the usual lecture from the local System Administrator. It usually boils down to these three things: #1) Respect the privacy of others. #2) Think before you type. #3) With great power comes great responsibility. ******************************************************************************* File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 955, in processChildren child.configure() File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py", line 676, in configure self.executeTest(self.configureLibrary) File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py", line 591, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py", line 323, in generateGuesses d = self.checkDownload() File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py", line 438, in checkDownload return self.getInstallDir() File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py", line 273, in getInstallDir installDir = self.Install() File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py", line 1178, in Install raise RuntimeError('Error running make on '+self.PACKAGE+': '+str(e)) ================================================================================ TEST configureLibrary from config.packages.metis(/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/package.py:571) TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/package.py:571) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional metis Looking for METIS in directory starting with metis Could not locate an existing copy of metis: ['sowing'] Downloading metis =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/metis-5.1.0-p1.tar.gz for METIS =============================================================================== Looking for METIS in directory starting with metis Found a copy of METIS in metis-5.1.0-p1 Looking for METIS in directory starting with metis Found a copy of METIS in metis-5.1.0-p1 Have to rebuild metis, /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/metis.petscconf != /lustre/atlas/scratch/adams/env003/petsc/arch-titan-opt64idx-pgi/lib/petsc/conf/metis =============================================================================== Configuring METIS with cmake, this may take several minutes =============================================================================== Executing: cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/autofs/na3_home1/adams/petsc_master_opt64idx_pgi -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="cc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-mp -fast" -DCMAKE_CXX_COMPILER="CC" -DCMAKE_CXX_FLAGS:STRING="-mp -fast" -DCMAKE_Fortran_COMPILER="ftn" -DCMAKE_Fortran_FLAGS:STRING="-mp -fast" -DGKLIB_PATH=../GKlib -DMETIS_USE_LONGINDEX=1 -DMETIS_USE_DOUBLEPRECISION=1 stdout: -- The C compiler identification is PGI 14.2.0 -- The CXX compiler identification is PGI 14.2.0 -- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc -- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC -- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Performing Test HAVE__thread -- Performing Test HAVE__thread - Failed -- checking for __thread thread-local storage - not found -- checking for __declspec(thread) thread-local storage - not found -- Configuring done -- Generating done -- Build files have been written to: /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build =============================================================================== Compiling and installing METIS; this may take several minutes =============================================================================== Executing: cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /usr/bin/gmake -j 5 && sudo /usr/bin/gmake install stdout: /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -H/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1 -B/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_start /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1 /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 2 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 3 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 4 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 5 [ 3%] [ 3%] [ 8%] [ 8%] [ 8%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/mcore.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/mcore.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/mcore.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/io.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/io.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/io.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/blas.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/fkvkselect.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/seq.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/seq.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/seq.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 6 [ 9%] /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 7 [ 11%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/omp.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/omp.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/omp.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 8 Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/random.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/random.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/random.c [ 13%] /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report 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-DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fs.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/fs.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/htable.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 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&& /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/memory.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/memory.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 25 [ 40%] Building C object 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/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/graph.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 60 [ 98%] /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 61 [100%] Building C object libmetis/CMakeFiles/metis.dir/auxapi.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/auxapi.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/auxapi.c Building C object libmetis/CMakeFiles/metis.dir/options.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/options.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/options.c Linking C static library libmetis.a cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -P CMakeFiles/metis.dir/cmake_clean_target.cmake cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt 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cmake_progress_start /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 0 Error running make on METIS: Could not execute "cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /usr/bin/gmake -j 5 && sudo /usr/bin/gmake install": /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -H/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1 -B/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_start /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1 /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 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/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/mcore.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/mcore.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/io.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/io.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/io.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/blas.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/fkvkselect.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/seq.c.o cd 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1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPI_IBARRIER #define PETSC_HAVE_MPI_IBARRIER 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPI_IALLREDUCE #define PETSC_HAVE_MPI_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPICH_NUMVERSION #define PETSC_HAVE_MPICH_NUMVERSION 30100300 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_HAVE_ISNORMAL #define PETSC_HAVE_ISNORMAL 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2015-06-04 16:11:01 -0500" #endif #ifndef PETSC_VERSION_BRANCH_GIT #define PETSC_VERSION_BRANCH_GIT "master" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "v3.5.4-3262-g8b6cf26" #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_SIZE #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #endif #ifndef PETSC_USE_MALLOC_COALESCED #define PETSC_USE_MALLOC_COALESCED 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC__DEFAULT_SOURCE #define PETSC__DEFAULT_SOURCE 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 65536 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GETARG #define PETSC_HAVE_GETARG 1 #endif #ifndef PETSC_HAVE_SCHED_CPU_SET_T #define PETSC_HAVE_SCHED_CPU_SET_T 1 #endif #ifndef PETSC_HAVE_PTHREAD_BARRIER_T #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** C specific Configure header /tmp/scratch/petsc-kMEe3S/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make on METIS: Could not execute "cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /usr/bin/gmake -j 5 && sudo /usr/bin/gmake install": /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -H/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1 -B/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_start /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build && /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1 /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis gmake[2]: Leaving directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory `/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build' /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 2 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 3 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 4 /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 5 [ 3%] [ 3%] [ 8%] [ 8%] [ 8%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/mcore.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/mcore.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/mcore.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/io.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/io.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/io.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/blas.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/fkvkselect.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/seq.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/seq.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/seq.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 6 [ 9%] /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 7 [ 11%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/omp.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/omp.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/omp.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 8 Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/random.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/random.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/random.c [ 13%] /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 9 [ 14%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/util.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/util.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/util.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pdb.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/pdb.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/GKlib/pdb.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 10 [ 16%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H 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-I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/include -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/. -I/lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/wspace.c.o -c /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/libmetis/wspace.c /autofs/nccs-svm1_sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cmake -E cmake_progress_report /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 51 [ 83%] Building C object libmetis/CMakeFiles/metis.dir/bucketsort.c.o cd /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/libmetis && /opt/cray/craype/2.2.1/bin/cc -mp -fast -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H 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cmake_progress_start /lustre/atlas2/env003/scratch/adams/petsc/arch-titan-opt64idx-pgi/externalpackages/metis-5.1.0-p1/build/CMakeFiles 0 We trust you have received the usual lecture from the local System Administrator. It usually boils down to these three things: #1) Respect the privacy of others. #2) Think before you type. #3) With great power comes great responsibility. ******************************************************************************* File "/lustre/atlas2/env003/scratch/adams/petsc/config/configure.py", line 363, in petsc_configure framework.configure(out = sys.stdout) File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1081, in configure self.processChildren() File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1068, in processChildren self.parallelQueueEvaluation(self.childGraph, script.useThreads) File "/lustre/atlas2/env003/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1030, in parallelQueueEvaluation raise RuntimeError(emsg) ================================================================================ Finishing Configure Run at Thu Jun 4 22:38:30 2015 ================================================================================