Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Thu May 14 09:07:57 2015 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --COPTFLAGS="-mp -fast" --CXXOPTFLAGS="-mp -fast" --FOPTFLAGS="-mp -fast" --prefix=/autofs/na3_home1/adams/petsc_master_opt64idx_pgi --download-metis --with-hwloc=0 --download-parmetis --with-cc=cc --with-clib-autodetect=0 --with-cxx=CC --with-cxxlib-autodetect=0 --with-fc=ftn --with-fortranlib-autodetect=0 --with-shared-libraries=0 --known-mpi-shared-libraries=1 --with-x=0 --with-64-bit-indices --with-debugging=0 PETSC_ARCH=arch-titan-opt64idx-pgi PETSC_DIR=/lustre/atlas/scratch/adams/env003/petsc_maint Working directory: /lustre/atlas2/env003/scratch/adams/petsc_maint Machine platform: ('Linux', 'titan-batch1', '3.0.101-0.31.1_1.0502.8394-cray_gem_s', '#1 SMP Wed Sep 10 03:56:55 UTC 2014', 'x86_64', 'x86_64') Python version: 2.7.9 (default, Mar 12 2015, 16:47:48) [GCC 4.3.4 [gcc-4_3-branch revision 152973]] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/framework.py:832) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:832) All intermediate test results are stored in /tmp/scratch/petsc-ROz5N9 Executing: cd /tmp/scratch/petsc-ROz5N9/config.programs/autoconfdir&&/usr/bin/autoreconf Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/scratch/petsc-ROz5N9/config.programs/sed1" Executing: "/usr/bin/diff" -w "/tmp/scratch/petsc-ROz5N9/config.programs/diff1" "/tmp/scratch/petsc-ROz5N9/config.programs/diff2" ================================================================================ TEST configureMkdir from config.programs(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /ccs/home/adams/git-fat/mkdir...not found Checking for program /opt/cray/llm/default/bin/mkdir...not found Checking for program /opt/cray/llm/default/etc/mkdir...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/mkdir...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/mkdir...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mkdir...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mkdir...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mkdir...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mkdir...not found Checking for program /ccs/home/adams/git-fat/mkdir...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mkdir...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mkdir...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mkdir...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mkdir...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mkdir...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/mkdir...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mkdir...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mkdir...not found Checking for program /sw/xk6/altd/bin/mkdir...not found Checking for program /sw/xk6/site-aprun/bin/mkdir...not found Checking for program /sw/xk6/bin/mkdir...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mkdir...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mkdir...not found Checking for program /opt/cray/atp/1.7.5/bin/mkdir...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mkdir...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mkdir...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mkdir...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mkdir...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mkdir...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mkdir...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mkdir...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mkdir...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mkdir...not found Checking for program /opt/cray/craype/2.2.1/bin/mkdir...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mkdir...not found Checking for program /opt/modules/3.2.6.7/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /ccs/home/adams/git-fat/autoreconf...not found Checking for program /opt/cray/llm/default/bin/autoreconf...not found Checking for program /opt/cray/llm/default/etc/autoreconf...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/autoreconf...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/autoreconf...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/autoreconf...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/autoreconf...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/autoreconf...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/autoreconf...not found Checking for program /ccs/home/adams/git-fat/autoreconf...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/autoreconf...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/autoreconf...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/autoreconf...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/autoreconf...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/autoreconf...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/autoreconf...not found Checking for program /opt/cray/netcdf/4.3.2/bin/autoreconf...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/autoreconf...not found Checking for program /sw/xk6/altd/bin/autoreconf...not found Checking for program /sw/xk6/site-aprun/bin/autoreconf...not found Checking for program /sw/xk6/bin/autoreconf...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/autoreconf...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/autoreconf...not found Checking for program /opt/cray/atp/1.7.5/bin/autoreconf...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/autoreconf...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/autoreconf...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/autoreconf...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/autoreconf...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/autoreconf...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/autoreconf...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/autoreconf...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/autoreconf...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/autoreconf...not found Checking for program /opt/cray/craype/2.2.1/bin/autoreconf...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/autoreconf...not found Checking for program /opt/modules/3.2.6.7/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/scratch/petsc-ROz5N9/config.programs autoreconf test successful! ================================================================================ TEST configurePrograms from config.programs(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/programs.py:66) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:66) Check for the programs needed to build and run PETSc Checking for program /ccs/home/adams/git-fat/sh...not found Checking for program /opt/cray/llm/default/bin/sh...not found Checking for program /opt/cray/llm/default/etc/sh...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/sh...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/sh...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/sh...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/sh...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/sh...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/sh...not found Checking for program /ccs/home/adams/git-fat/sh...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/sh...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/sh...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/sh...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/sh...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/sh...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/sh...not found Checking for program /opt/cray/netcdf/4.3.2/bin/sh...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/sh...not found Checking for program /sw/xk6/altd/bin/sh...not found Checking for program /sw/xk6/site-aprun/bin/sh...not found Checking for program /sw/xk6/bin/sh...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/sh...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/sh...not found Checking for program /opt/cray/atp/1.7.5/bin/sh...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/sh...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/sh...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/sh...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/sh...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/sh...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/sh...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/sh...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/sh...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/sh...not found Checking for program /opt/cray/craype/2.2.1/bin/sh...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/sh...not found Checking for program /opt/modules/3.2.6.7/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /ccs/home/adams/git-fat/sed...not found Checking for program /opt/cray/llm/default/bin/sed...not found Checking for program /opt/cray/llm/default/etc/sed...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/sed...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/sed...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/sed...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/sed...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/sed...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/sed...not found Checking for program /ccs/home/adams/git-fat/sed...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/sed...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/sed...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/sed...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/sed...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/sed...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/sed...not found Checking for program /opt/cray/netcdf/4.3.2/bin/sed...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/sed...not found Checking for program /sw/xk6/altd/bin/sed...not found Checking for program /sw/xk6/site-aprun/bin/sed...not found Checking for program /sw/xk6/bin/sed...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/sed...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/sed...not found Checking for program /opt/cray/atp/1.7.5/bin/sed...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/sed...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/sed...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/sed...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/sed...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/sed...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/sed...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/sed...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/sed...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/sed...not found Checking for program /opt/cray/craype/2.2.1/bin/sed...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/sed...not found Checking for program /opt/modules/3.2.6.7/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /ccs/home/adams/git-fat/mv...not found Checking for program /opt/cray/llm/default/bin/mv...not found Checking for program /opt/cray/llm/default/etc/mv...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/mv...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/mv...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/mv...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/mv...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/mv...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/mv...not found Checking for program /ccs/home/adams/git-fat/mv...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/mv...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/mv...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/mv...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/mv...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/mv...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/mv...not found Checking for program /opt/cray/netcdf/4.3.2/bin/mv...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/mv...not found Checking for program /sw/xk6/altd/bin/mv...not found Checking for program /sw/xk6/site-aprun/bin/mv...not found Checking for program /sw/xk6/bin/mv...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/mv...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/mv...not found Checking for program /opt/cray/atp/1.7.5/bin/mv...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/mv...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/mv...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/mv...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/mv...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/mv...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/mv...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/mv...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/mv...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/mv...not found Checking for program /opt/cray/craype/2.2.1/bin/mv...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/mv...not found Checking for program /opt/modules/3.2.6.7/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /ccs/home/adams/git-fat/cp...not found Checking for program /opt/cray/llm/default/bin/cp...not found Checking for program /opt/cray/llm/default/etc/cp...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/cp...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/cp...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/cp...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/cp...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/cp...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/cp...not found Checking for program /ccs/home/adams/git-fat/cp...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/cp...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/cp...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/cp...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/cp...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/cp...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/cp...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cp...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cp...not found Checking for program /sw/xk6/altd/bin/cp...not found Checking for program /sw/xk6/site-aprun/bin/cp...not found Checking for program /sw/xk6/bin/cp...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/cp...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/cp...not found Checking for program /opt/cray/atp/1.7.5/bin/cp...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/cp...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/cp...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/cp...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/cp...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/cp...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/cp...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/cp...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/cp...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/cp...not found Checking for program /opt/cray/craype/2.2.1/bin/cp...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/cp...not found Checking for program /opt/modules/3.2.6.7/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /ccs/home/adams/git-fat/grep...not found Checking for program /opt/cray/llm/default/bin/grep...not found Checking for program /opt/cray/llm/default/etc/grep...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/grep...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/grep...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/grep...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/grep...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/grep...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/grep...not found Checking for program /ccs/home/adams/git-fat/grep...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/grep...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/grep...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/grep...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/grep...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/grep...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/grep...not found Checking for program /opt/cray/netcdf/4.3.2/bin/grep...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/grep...not found Checking for program /sw/xk6/altd/bin/grep...not found Checking for program /sw/xk6/site-aprun/bin/grep...not found Checking for program /sw/xk6/bin/grep...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/grep...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/grep...not found Checking for program /opt/cray/atp/1.7.5/bin/grep...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/grep...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/grep...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/grep...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/grep...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/grep...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/grep...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/grep...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/grep...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/grep...not found Checking for program /opt/cray/craype/2.2.1/bin/grep...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/grep...not found Checking for program /opt/modules/3.2.6.7/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /ccs/home/adams/git-fat/rm...not found Checking for program /opt/cray/llm/default/bin/rm...not found Checking for program /opt/cray/llm/default/etc/rm...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/rm...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/rm...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/rm...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/rm...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/rm...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/rm...not found Checking for program /ccs/home/adams/git-fat/rm...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/rm...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/rm...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/rm...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/rm...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/rm...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/rm...not found Checking for program /opt/cray/netcdf/4.3.2/bin/rm...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/rm...not found Checking for program /sw/xk6/altd/bin/rm...not found Checking for program /sw/xk6/site-aprun/bin/rm...not found Checking for program /sw/xk6/bin/rm...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/rm...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/rm...not found Checking for program /opt/cray/atp/1.7.5/bin/rm...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/rm...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/rm...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/rm...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/rm...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/rm...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/rm...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/rm...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/rm...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/rm...not found Checking for program /opt/cray/craype/2.2.1/bin/rm...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/rm...not found Checking for program /opt/modules/3.2.6.7/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /ccs/home/adams/git-fat/diff...not found Checking for program /opt/cray/llm/default/bin/diff...not found Checking for program /opt/cray/llm/default/etc/diff...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/diff...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/diff...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/diff...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/diff...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/diff...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/diff...not found Checking for program /ccs/home/adams/git-fat/diff...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/diff...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/diff...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/diff...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/diff...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/diff...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/diff...not found Checking for program /opt/cray/netcdf/4.3.2/bin/diff...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/diff...not found Checking for program /sw/xk6/altd/bin/diff...not found Checking for program /sw/xk6/site-aprun/bin/diff...not found Checking for program /sw/xk6/bin/diff...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/diff...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/diff...not found Checking for program /opt/cray/atp/1.7.5/bin/diff...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/diff...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/diff...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/diff...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/diff...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/diff...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/diff...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/diff...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/diff...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/diff...not found Checking for program /opt/cray/craype/2.2.1/bin/diff...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/diff...not found Checking for program /opt/modules/3.2.6.7/bin/diff...not found Checking for program /usr/bin/diff...found Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /ccs/home/adams/ps...not found Checking for program /ccs/home/adams/git-fat/gzip...not found Checking for program /opt/cray/llm/default/bin/gzip...not found Checking for program /opt/cray/llm/default/etc/gzip...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/gzip...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/gzip...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/gzip...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/gzip...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/gzip...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/gzip...not found Checking for program /ccs/home/adams/git-fat/gzip...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/gzip...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/gzip...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/gzip...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/gzip...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/gzip...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/gzip...not found Checking for program /opt/cray/netcdf/4.3.2/bin/gzip...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/gzip...not found Checking for program /sw/xk6/altd/bin/gzip...not found Checking for program /sw/xk6/site-aprun/bin/gzip...not found Checking for program /sw/xk6/bin/gzip...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/gzip...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/gzip...not found Checking for program /opt/cray/atp/1.7.5/bin/gzip...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/gzip...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/gzip...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/gzip...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/gzip...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/gzip...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/gzip...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/gzip...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/gzip...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/gzip...not found Checking for program /opt/cray/craype/2.2.1/bin/gzip...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/gzip...not found Checking for program /opt/modules/3.2.6.7/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/python" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 5 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/lustre/atlas/scratch/adams/env003/petsc_maint" C language is C ================================================================================ TEST configureCLanguage from PETSc.options.languages(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler Defined "CLANGUAGE_C" to "1" Executing: git --version stdout: git version 2.3.2 ================================================================================ TEST configureGit from config.sourceControl(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /ccs/home/adams/git-fat/git...not found Checking for program /opt/cray/llm/default/bin/git...not found Checking for program /opt/cray/llm/default/etc/git...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/git...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/git...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/git...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/git...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/git...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/git...not found Checking for program /ccs/home/adams/git-fat/git...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/git...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/git...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/git...found Defined make macro "GIT" to "git" ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /ccs/home/adams/git-fat/gdb...not found Checking for program /opt/cray/llm/default/bin/gdb...not found Checking for program /opt/cray/llm/default/etc/gdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/gdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/gdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/gdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/gdb...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/gdb...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/gdb...not found Checking for program /ccs/home/adams/git-fat/gdb...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/gdb...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/gdb...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/gdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/gdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/gdb...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/gdb...not found Checking for program /opt/cray/netcdf/4.3.2/bin/gdb...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/gdb...not found Checking for program /sw/xk6/altd/bin/gdb...not found Checking for program /sw/xk6/site-aprun/bin/gdb...not found Checking for program /sw/xk6/bin/gdb...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/gdb...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/gdb...not found Checking for program /opt/cray/atp/1.7.5/bin/gdb...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/gdb...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/gdb...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/gdb...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/gdb...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/gdb...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/gdb...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/gdb...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/gdb...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/gdb...not found Checking for program /opt/cray/craype/2.2.1/bin/gdb...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/gdb...not found Checking for program /opt/modules/3.2.6.7/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /ccs/home/adams/git-fat/dbx...not found Checking for program /opt/cray/llm/default/bin/dbx...not found Checking for program /opt/cray/llm/default/etc/dbx...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/dbx...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/dbx...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/dbx...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/dbx...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/dbx...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/dbx...not found Checking for program /ccs/home/adams/git-fat/dbx...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/dbx...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/dbx...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/dbx...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/dbx...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/dbx...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/dbx...not found Checking for program /opt/cray/netcdf/4.3.2/bin/dbx...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/dbx...not found Checking for program /sw/xk6/altd/bin/dbx...not found Checking for program /sw/xk6/site-aprun/bin/dbx...not found Checking for program /sw/xk6/bin/dbx...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/dbx...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/dbx...not found Checking for program /opt/cray/atp/1.7.5/bin/dbx...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/dbx...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/dbx...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/dbx...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/dbx...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/dbx...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/dbx...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/dbx...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/dbx...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/dbx...not found Checking for program /opt/cray/craype/2.2.1/bin/dbx...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/dbx...not found Checking for program /opt/modules/3.2.6.7/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/X11/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /opt/bin/dbx...not found Checking for program /usr/lib/mit/bin/dbx...not found Checking for program /usr/lib/mit/sbin/dbx...not found Checking for program /usr/lib/qt3/bin/dbx...not found Checking for program /opt/cray/bin/dbx...not found Checking for program /opt/public/bin/dbx...not found Checking for program /opt/bin/dbx...not found Checking for program /opt/public/bin/dbx...not found Checking for program /ccs/home/adams/dbx...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc_maint/bin/win32fe/dbx...not found Checking for program /ccs/home/adams/git-fat/xdb...not found Checking for program /opt/cray/llm/default/bin/xdb...not found Checking for program /opt/cray/llm/default/etc/xdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/xdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/xdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/xdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/xdb...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/xdb...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/xdb...not found Checking for program /ccs/home/adams/git-fat/xdb...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/xdb...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/xdb...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/xdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/xdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/xdb...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/xdb...not found Checking for program /opt/cray/netcdf/4.3.2/bin/xdb...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/xdb...not found Checking for program /sw/xk6/altd/bin/xdb...not found Checking for program /sw/xk6/site-aprun/bin/xdb...not found Checking for program /sw/xk6/bin/xdb...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/xdb...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/xdb...not found Checking for program /opt/cray/atp/1.7.5/bin/xdb...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/xdb...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/xdb...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/xdb...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/xdb...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/xdb...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/xdb...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/xdb...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/xdb...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/xdb...not found Checking for program /opt/cray/craype/2.2.1/bin/xdb...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/xdb...not found Checking for program /opt/modules/3.2.6.7/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/X11/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /opt/bin/xdb...not found Checking for program /usr/lib/mit/bin/xdb...not found Checking for program /usr/lib/mit/sbin/xdb...not found Checking for program /usr/lib/qt3/bin/xdb...not found Checking for program /opt/cray/bin/xdb...not found Checking for program /opt/public/bin/xdb...not found Checking for program /opt/bin/xdb...not found Checking for program /opt/public/bin/xdb...not found Checking for program /ccs/home/adams/xdb...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc_maint/bin/win32fe/xdb...not found Checking for program /ccs/home/adams/git-fat/dsymutil...not found Checking for program /opt/cray/llm/default/bin/dsymutil...not found Checking for program /opt/cray/llm/default/etc/dsymutil...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/dsymutil...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/dsymutil...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/dsymutil...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/dsymutil...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/dsymutil...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/dsymutil...not found Checking for program /ccs/home/adams/git-fat/dsymutil...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/dsymutil...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/dsymutil...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/dsymutil...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/dsymutil...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/dsymutil...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/dsymutil...not found Checking for program /opt/cray/netcdf/4.3.2/bin/dsymutil...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/dsymutil...not found Checking for program /sw/xk6/altd/bin/dsymutil...not found Checking for program /sw/xk6/site-aprun/bin/dsymutil...not found Checking for program /sw/xk6/bin/dsymutil...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/dsymutil...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/dsymutil...not found Checking for program /opt/cray/atp/1.7.5/bin/dsymutil...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/dsymutil...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/dsymutil...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/dsymutil...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/dsymutil...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/dsymutil...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/dsymutil...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/dsymutil...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/dsymutil...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/dsymutil...not found Checking for program /opt/cray/craype/2.2.1/bin/dsymutil...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/dsymutil...not found Checking for program /opt/modules/3.2.6.7/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/X11/dsymutil...not found Checking for program /usr/X11R6/bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /opt/bin/dsymutil...not found Checking for program /usr/lib/mit/bin/dsymutil...not found Checking for program /usr/lib/mit/sbin/dsymutil...not found Checking for program /usr/lib/qt3/bin/dsymutil...not found Checking for program /opt/cray/bin/dsymutil...not found Checking for program /opt/public/bin/dsymutil...not found Checking for program /opt/bin/dsymutil...not found Checking for program /opt/public/bin/dsymutil...not found Checking for program /ccs/home/adams/dsymutil...not found Checking for program /lustre/atlas/scratch/adams/env003/petsc_maint/bin/win32fe/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureArchitecture from PETSc.options.arch(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/arch.py:25) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:25) Checks PETSC_ARCH and sets if not set =============================================================================== Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-titan-opt64idx-pgi, ignoring environment: arch-titan-dbg-pgi =============================================================================== Defined "ARCH" to ""arch-titan-opt64idx-pgi"" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be Executing: cd /lustre/atlas/scratch/adams/env003/petsc_maint && git describe stdout: v3.5.3-2932-g3b52111 Executing: cd /lustre/atlas/scratch/adams/env003/petsc_maint && git log -1 --pretty=format:%H stdout: 3b521111aafccbd2a6a8066bb06249ddaf4be65d Executing: cd /lustre/atlas/scratch/adams/env003/petsc_maint && git log -1 --pretty=format:%ci stdout: 2015-05-12 12:32:46 -0500 Executing: cd /lustre/atlas/scratch/adams/env003/petsc_maint && git branch stdout: maint * master ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) bin/maint exists. This appears to be a repository clone .git directory exists Defined "VERSION_GIT" to ""v3.5.3-2932-g3b52111"" Defined "VERSION_DATE_GIT" to ""2015-05-12 12:32:46 -0500"" Defined "VERSION_BRANCH_GIT" to ""master"" Changed persistence directory to /lustre/atlas/scratch/adams/env003/petsc_maint/arch-titan-opt64idx-pgi/lib/petsc/conf ================================================================================ TEST setInstallDir from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/installDir.py:74) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:74) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/installDir.py:67) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:67) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/installDir.py:51) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:51) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/installDir.py:87) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:87) Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Preprocess stderr before filtering:: Preprocess stderr after filtering:: Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Preprocess stderr before filtering:: Preprocess stderr after filtering:: Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 11) 2.23.1 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 11) 2.23.1 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 11) 2.23.1 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 11) 2.23.1 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Pushing language C Popping language C Defined make macro "AR_FLAGS" to "cr" Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Pushing language C Popping language C Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Executing: cc -V stdout: pgcc 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Pushing language C Popping language C Executing: uname -s stdout: Linux Executing: cc -V stdout: pgcc 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Pushing language CXX Popping language CXX Executing: uname -s stdout: Linux Executing: cc -V stdout: pgcc 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Pushing language FC Popping language FC Checking for header: dlfcn.h All intermediate test results are stored in /tmp/scratch/petsc-ROz5N9/config.headers Executing: cc -E -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.headers /tmp/scratch/petsc-ROz5N9/config.headers/conftest.c stdout: # 1 "/tmp/scratch/petsc-ROz5N9/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-ROz5N9/config.headers/confdefs.h" # 2 "/tmp/scratch/petsc-ROz5N9/config.headers/conftest.c" # 1 "/tmp/scratch/petsc-ROz5N9/config.headers/conffix.h" # 3 "/tmp/scratch/petsc-ROz5N9/config.headers/conftest.c" # 1 "/usr/include/dlfcn.h" # 18 "/usr/include/dlfcn.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 24 "/usr/include/dlfcn.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 26 "/usr/include/dlfcn.h" # 27 "/usr/include/dlfcn.h" # 1 "/usr/include/bits/dlfcn.h" # 18 "/usr/include/bits/dlfcn.h" # 24 "/usr/include/bits/dlfcn.h" # 33 "/usr/include/bits/dlfcn.h" # 38 "/usr/include/bits/dlfcn.h" # 41 "/usr/include/bits/dlfcn.h" # 29 "/usr/include/dlfcn.h" # 56 "/usr/include/dlfcn.h" extern void * dlopen ( const char * __file , int __mode ) ; # 60 "/usr/include/dlfcn.h" extern int dlclose ( void * __handle ) ; # 64 "/usr/include/dlfcn.h" extern void * dlsym ( void * __restrict __handle , const char * __restrict __name ) ; # 82 "/usr/include/dlfcn.h" extern char * dlerror ( void ) ; # 4 "/tmp/scratch/petsc-ROz5N9/config.headers/conftest.c" Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-ROz5N9/config.libraries Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.libraries/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.libraries/conftest /tmp/scratch/petsc-ROz5N9/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Pushing language C Popping language C ================================================================================ TEST printEnvVariables from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1535) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1535) **** printenv **** = PE_LIBSCI_GENCOMPS_CRAY_interlagos=83 PBS_O_LANG=en_US.UTF-8 CRAY_LIBSCI_BASE_DIR=/opt/cray/libsci/13.0.1 CPU=x86_64 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/petsc/3.5.1.0/real/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig INFOPATH=/opt/acml/5.3.1/Doc:/usr/local/info:/usr/share/info:/usr/info ALTD_ON=1 XTPE_LINK_TYPE=dynamic PROFILEREAD=true ATP_HOME=/opt/cray/atp/1.7.5 JAVA_HOME=/usr/lib64/jvm/java APRUN_USAGE_PATH=/sw/xk6/aprun-usage PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/13.0.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5/1.8.13/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/trilinos/11.10.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_GENCOMPS_GNU_interlagos=49 48 CVSROOT=:ext:madams@anag.lbl.gov:/usr/local/cvsroot PE_TPSL_DEFAULT_GENCOMPS_PGI_x86_64=141 PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_SMA_DIR_CRAY_DEFAULT64=64 CSHEDIT=emacs LESSOPEN=lessopen.sh %s PE_LIBSCI_GENCOMPS_INTEL_interlagos=140 CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include USER=adams PGI_VERS_STR=14.2.0 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=140 PGROUPD_LICENSE_FILE=/opt/pgi/license.dat JDK_HOME=/usr/lib64/jvm/java PE_HDF5_DEFAULT_GENCOMPS_GNU=49 48 CRAY_LIBSCI_DIR=/opt/cray/libsci/13.0.1 CRAY_NETCDF_HDF5PARALLEL_VERSION=4.3.2 CRAYPE_LINK_TYPE=dynamic JAVA_BINDIR=/usr/lib64/jvm/java/bin PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf/4.3.2/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig CRAY_LIBSCI_VERSION=13.0.1 PE_ACML_DEFAULT_DIR_OPENMP=_mp PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL TMPDIR=/tmp/scratch PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI PBS_GPUFILE=/var/spool/torque/aux//2353226gpu PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/ga/5.1.0.5/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig PE_LIBSCI_GENCOMPS_PGI_x86_64=141 PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=49 48 MODULE_VERSION=3.2.6.7 LIBSCI_VERSION=13.0.1 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include PE_MPICH_DEFAULT_GENCOMPS_GNU=49 48 PE_ACML_TARGET_interlagos=_fma4 PE_ACML_DIR_INTEL=ifort64 PE_LIBSCI_GENCOMPS_INTEL_x86_64=140 PE_GA_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_FORTRAN_PKGCONFIG_LIBS=netcdff_parallel:mpichf90 PE_MPICH_GENCOMPS_PGI=141 PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda PE_ACML_DEFAULT_TARGET_interlagos=_fma4 CRAY_CUDATOOLKIT_VERSION=5.5.51-1.0502.9594.3.1 NNTPSERVER=news CUDATOOLKIT_HOME=/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1 HOST=titan-batch1 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/hdf5/1.8.13/PGI/141/lib/pkgconfig:/opt/cray/ga/5.1.0.5/PGI/141/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/PGI/141/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/PGI/141/lib/pkgconfig:/opt/cray/netcdf/4.3.2/PGI/141/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib/pkgconfig PE_MPICH_MODULE_NAME=cray-mpich PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV=CRAY GNU DDTMPIRUN=/opt/cray/alps/default/bin/aprun PBS_MICFILE=/var/spool/torque/aux//2353226mic PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/fftw/3.3.4.0/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=140 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.5.0/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig JRE_HOME=/usr/lib64/jvm/java/jre PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/1.4.2/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig PBS_O_HOME=/ccs/home/adams PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=49 48 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI WORLDWORK=/lustre/atlas/world-shared PBS_ENVIRONMENT=PBS_INTERACTIVE PE_LIBSCI_GENCOMPS_PGI_interlagos=141 PGI=/opt/pgi/14.2.0 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@ LIBSCI_BASE_DIR=/opt/cray/libsci/13.0.1 PE_LIBSCI_GENCOMPS_INTEL_haswell=140 ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/atp/1.7.5/lib/ PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL PE_LIBSCI_GENCOMPS_CRAY_haswell=83 PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5-parallel/1.8.13/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_MPICH_DIR_PGI_DEFAULT64=64 PE_GA_DEFAULT_VOLATILE_PRGENV=GNU LOADEDMODULES=modules/3.2.6.7:eswrap/1.1.0-1.020200.1231.0:craype-network-gemini:craype/2.2.1:pgi/14.2.0:cray-libsci/13.0.1:udreg/2.3.2-1.0502.9275.1.25.gem:ugni/5.0-1.0502.9685.4.24.gem:pmi/5.0.5-1.0000.10300.134.8.gem:dmapp/7.0.1-1.0502.9501.5.211.gem:gni-headers/3.0-1.0502.9684.5.2.gem:xpmem/0.1-2.0502.55507.3.2.gem:job/1.5.5-0.1_2.0502.54585.3.66.gem:dvs/2.5_0.9.0-1.0502.1873.1.142.gem:rca/1.0.0-2.0502.53711.3.125.gem:atp/1.7.5:PrgEnv-pgi/5.2.40:cray-mpich/7.0.4:craype-interlagos:lustredu/1.4:DefApps:site-aprun/1.0:aprun-usage/1.0:altd/1.0:cmake/2.8.10.2:acml/5.3.1:cray-netcdf-hdf5parallel/4.3.2:ddt/4.2-35818:cudatoolkit/5.5.51-1.0502.9594.3.1:git/2.3.2:python/2.7.9:nodestat/2.2-1.0502.53712.3.109.gem:sdb/1.0-1.0502.55976.5.27.gem:alps/5.2.1-2.0502.9479.20.1.gem:lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50:hss-llm/7.2.0:Base-opts/1.0.2-1.0502.53325.1.2.gem PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=140 PE_MPICH_DEFAULT_DIR_PGI_DEFAULT64=64 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ CRAY_LD_LIBRARY_PATH=/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/lib64:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64:/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib:/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64:/opt/cray/libsci/13.0.1/PGI/141/x86_64/lib PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PE_ACML_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DEFAULT_DIR@@PE_ACML_DEFAULT_TARGET@@PE_ACML_DEFAULT_DIR_OPENMP@@PE_ACML_DEFAULT_DIR_DEFAULT64@/lib/pkgconfig PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI PE_MPICH_DEFAULT_GENCOMPS_PGI=141 PYTHONPATH=/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/lib64/py:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/lib/python2.7/site-packages:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/lib/python2.7/site-packages LESS=-M -I PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64=83 CRAYPE_NETWORK_TARGET=gemini USERMODULES=/opt/modules/3.2.6.7/init/.usermodules:acml:alps:apprentice2:atp:blcr:cce:chapel:cray-fftw:cray-libsci:cray-mpich2:craypat:craype:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:mrnet:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:petsc:petsc-complex:pgi:pmi:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview XKEYSYMDB=/usr/share/X11/XKeysymDB CRAY_CPU_TARGET=interlagos PE_PKGCONFIG_PRODUCTS=PE_NETCDF_HDF5PARALLEL:PE_ACML:PE_MPICH:PE_LIBSCI NETCDF_DIR=/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141 PE_LIBSCI_MODULE_NAME=cray-libsci/13.0.1 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_ACML_TARGET_x86_64= PELOCAL_PRGENV=true PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=140 TARGETMODULES=/opt/modules/3.2.6.7/init/.targetmodules:craype-abudhabi:craype-abudhabi-cu:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-knc:craype-mc12:craype-mc8:craype-network-aries:craype-network-gemini:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-target-petest:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon PE_ACML_DIR_DEFAULT64=_int64 SITE_APRUN_DIR=/sw/xk6/site-aprun CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64 LS_COLORS= CRAYOS_VERSION=5.2.40 PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=49 48 JAVA_ROOT=/usr/lib64/jvm/java PBS_O_LOGNAME=adams ESWRAP_LOGIN=titan-login1 MODULE_VERSION_STACK=3.2.6.7 PE_NETCDF_HDF5PARALLEL_VOLATILE_PRGENV=GNU SHLVL=1 CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/include PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@ CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64 PETSC_DIR=/autofs/na3_home1/adams/petsc_maint PBS_O_PATH=/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2-35818/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/bin:/opt/public/bin PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35=nv35 PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_TPSL XTPE_NETWORK_TARGET=gemini ENV=/etc/bash.bashrc PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=140 LS_OPTIONS=-N --color=none -T 0 MODULEPATH=/opt/cray/gem/modulefiles:/opt/cray/craype/default/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/sw/xk6/modulefiles:/sw/xk7/modulefiles QT_HOME_DIR=/usr/share/desktop-data PGI_VERSION=14.2 ALT_LINKER=/sw/xk6/altd/bin/ld SYSTEM_USERDIR=/tmp/work/adams PERL5LIB=/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/lib64/perl5/site_perl PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_haswell=140 OPENSSL_NO_DEFAULT_ZLIB=yes PE_FFTW_DEFAULT_TARGET_interlagos=interlagos LC_ALL=POSIX PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_MPICH_DEFAULT_GENCOMPS_CRAY=83 PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=83 LANG=en_US.UTF-8 ALTD_PATH=/sw/xk6/altd PBS_O_WORKDIR=/lustre/atlas2/env003/scratch/adams _LMFILES_000=/opt/modulefiles/modules/3.2.6.7:/opt/modulefiles/eswrap/1.1.0-1.020200.1231.0:/opt/cray/craype/default/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.2.1:/opt/modulefiles/pgi/14.2.0:/opt/cray/modulefiles/cray-libsci/13.0.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.9275.1.25.gem:/opt/cray/gem/modulefiles/ugni/5.0-1.0502.9685.4.24.gem:/opt/cray/gem/modulefiles/pmi/5.0.5-1.0000.10300.134.8.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.9501.5.211.gem:/opt/cray/gem/modulefiles/gni-headers/3.0-1.0502.9684.5.2.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.55507.3.2.gem:/opt/cray/gem/modulefiles/job/1.5.5-0.1_2.0502.54585.3.66.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.1873.1.142.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.53711.3.125.gem:/opt/cray/modulefiles/atp/1.7.5:/opt/cray/modulefiles/PrgEnv-pgi/5.2.40:/opt/cray/modulefiles/cray-mpich/7.0.4:/opt/cray/craype/default/modulefiles/craype-interlagos:/sw/xk6/modulefiles/lustredu/1.4:/sw/xk6/modulefiles/Def _LMFILES_001=Apps:/sw/xk6/modulefiles/site-aprun/1.0:/sw/xk6/modulefiles/aprun-usage/1.0:/sw/xk6/modulefiles/altd/1.0:/sw/xk6/modulefiles/cmake/2.8.10.2:/opt/modulefiles/acml/5.3.1:/opt/cray/modulefiles/cray-netcdf-hdf5parallel/4.3.2:/sw/xk6/modulefiles/ddt/4.2-35818:/opt/cray/modulefiles/cudatoolkit/5.5.51-1.0502.9594.3.1:/sw/xk6/modulefiles/git/2.3.2:/sw/xk6/modulefiles/python/2.7.9:/opt/cray/gem/modulefiles/nodestat/2.2-1.0502.53712.3.109.gem:/opt/cray/gem/modulefiles/sdb/1.0-1.0502.55976.5.27.gem:/opt/cray/gem/modulefiles/alps/5.2.1-2.0502.9479.20.1.gem:/opt/cray/modulefiles/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50:/opt/modulefiles/hss-llm/7.2.0:/opt/modulefiles/Base-opts/1.0.2-1.0502.53325.1.2.gem PE_ACML_DEFAULT_DIR_CRAY=gfortran64 DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/include PE_LIBSCI_DEFAULT_GENCOMPS_PGI_interlagos=141 PROJWORK=/lustre/atlas/proj-shared PKG_CONFIG_PATH_DEFAULT=/opt/cray/papi/5.3.1/lib64/pkgconfig PE_SMA_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/sma@PE_SMA_DIR_DEFAULT64@/lib64/pkgconfig PBS_TASKNUM=1 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PBS_NUM_NODES=1 PE_CXX_PKGCONFIG_LIBS=netcdf_c++4_parallel:mpichcxx SSH_TTY=/dev/pts/16 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=49 48 PE_NETCDF_FORTRAN_PKGCONFIG_LIBS=netcdff_parallel PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL ACML_BASE_DIR=/opt/acml/5.3.1 CH_TIMER=TRUE PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=49 48 SSH_CLIENT=68.49.162.216 60722 22 LOGNAME=adams PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig PATH=/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2-35818/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PBS_VERSION=TORQUE-4.2.6 PE_ACML_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DIR@@PE_ACML_TARGET@@PE_ACML_DIR_OPENMP@@PE_ACML_DIR_DEFAULT64@/lib/pkgconfig HOME=/ccs/home/adams CRAY_PRE_COMPILE_OPTS=-hnetwork=gemini INFODIR=/usr/local/info:/usr/share/info:/usr/info MAP_LICENSE_FILE=/sw/sources/ddt/Licence.map PE_NETCDF_CXX_PKGCONFIG_LIBS=netcdf_c++4_parallel CRAY_PRGENVPGI=loaded PBS_O_SERVER=moab1.ccs.ornl.gov GITDIR=/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4 CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64 PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-intel/140/lib/pkgconfig:/opt/cray/hdf5/1.8.13/INTEL/140/lib/pkgconfig:/opt/cray/ga/5.1.0.5/INTEL/140/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/INTEL/140/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/INTEL/140/lib/pkgconfig:/opt/cray/netcdf/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/INTEL/140/lib/pkgconfig PE_MPICH_FIXED_PRGENV=INTEL PE_ACML_DEFAULT_DIR_INTEL=ifort64 PKGCONFIG_ENABLED=1 ALTD_SELECT_OFF_USERS= SHMEM_ABORT_ON_ERROR=1 PE_LIBSCI_GENCOMPS_GNU_x86_64=49 48 XAUTHLOCALHOSTNAME=titan-ext3 PE_PKGCONFIG_LIBS=cray-cudatoolkit:netcdf_parallel:acml:mpich:AtpSigHandler:cray-rca:libsci_mpi:libsci PBS_NODENUM=0 PE_LIBSCI_GENCOMPS_INTEL_sandybridge=140 CH_OUTPUT_INTERVAL=100000 XCURSOR_THEME=DMZ CRAYPE_DIR=/opt/cray/craype/2.2.1 XDG_DATA_DIRS=/usr/local/share:/usr/share:/etc/opt/kde3/share:/opt/cray/share:/opt/kde3/share:/opt/public/share:/usr/share/gnome/help PE_MPICH_TARGET_VAR_nvidia35=-lcudart CRAY_MPICH2_BASEDIR=/opt/cray/mpt/7.0.4/gni CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include MANPATH=/opt/cray/llm/default/man:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/man:/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/man:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/share/man:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/share/man:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/share/man:/opt/cray/netcdf/4.3.2/share/man:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/man:/sw/sources/hpss/man:/sw/xk6/man:/sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/man:/opt/cray/mpt/7.0.4/gni/man/mpich2:/opt/cray/atp/1.7.5/man:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/man:/opt/cray/libsci/13.0.1/man:/opt/pgi/14.2.0/linux86-64/14.2/man:/opt/cray/craype/2.2.1/man:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/man:/opt/modules/3.2.6.7/man:/usr/share/man:/usr/local/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/current/share/man CRAY_CUDATOOLKIT_INCLUDE_OPTS=-I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/Debugger/include PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci_acc/3.0.2/@PRGENV@/@PE_LIBSCI_ACC_DEFAULT_GENCOMPS@/@PE_LIBSCI_ACC_DEFAULT_TARGET@/lib/pkgconfig ALTD_SELECT_USERS= PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_MPICH PBS_NODEFILE=/var/spool/torque/aux//2353226 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 HOSTNAME=titan-ext3 PETSC_ARCH=arch-titan-opt64idx-pgi PBS_VNODENUM=0 PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=140 MACHTYPE=x86_64-suse-linux GROUP=adams MINICOM=-c on CVS_RSH=ssh PE_LIBSCI_GENCOMPS_CRAY_sandybridge=83 PE_PETSC_DEFAULT_GENCOMPS_PGI_x86_64=141 DVS_VERSION=0.9.0 LIBRARYMODULES=/opt/modules/3.2.6.7/init/.librarymodules:acml:alps:apprentice2:atp:cray-fftw:cray-libsci:cray-mpich2:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:lgdb:libfast:libsci_acc:mpich1:mpich2:mrnet:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:petsc:petsc-complex:pmi:shmem:tpsl:trilinos:xt-atp:xt-lgdb:xt-libsci:xt-mpt:xt-papi PE_LIBSCI_DEFAULT_GENCOMPS_GNU_interlagos=49 48 MODULESHOME=/opt/modules/3.2.6.7 ACML_VERSION=5.3.1 PBS_JOBCOOKIE=0D02636EAB7B2993BE5EFA10654475BE PBS_O_HOST=titan-ext3.ccs.ornl.gov PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=83 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=83 PE_MPICH_NV_LIBS_nvidia35=-lcudart PE_LIBSCI_GENCOMPS_CRAY_x86_64=83 PBS_NUM_PPN=16 PBS_O_SHELL=/bin/csh XDG_CONFIG_DIRS=/etc/xdg OMP_NUM_THREADS=16 PE_NETCDF_DEFAULT_GENCOMPS_GNU=49 48 PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20=nv20 PAGER=less PE_GA_DEFAULT_GENCOMPS_GNU=49 48 CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64 PE_ACML_DIR_PGI=pgi64 ATP_MRNET_COMM_PATH=/opt/cray/atp/1.7.5/bin/atp_mrnet_commnode_wrapper CRAY_MPICH2_VER=7.0.4 CRAY_CUDATOOLKIT_POST_LINK_OPTS=-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -Wl,--as-needed -Wl,-lcupti -Wl,-lcudart -Wl,--no-as-needed -L/opt/cray/nvidia/default/lib64 -lcuda LD_LIBRARY_PATH=/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/lib:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/lib:/opt/sw/xk6/ddt/4.2-35818/sles11.1_binary/lib/32:/opt/sw/xk6/ddt/4.2-35818/sles11.1_binary/lib/64:/opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/lib64:/opt/pgi/14.2.0/linux86-64/14.2/libso:/opt/pgi/14.2.0/linux86-64/14.2/lib G_BROKEN_FILENAMES=1 FFTW_SYSTEM_WISDOM_DIR=/opt/cray/libsci/13.0.1 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_sandybridge=83 PGI_PATH=/opt/pgi/14.2.0 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_sandybridge=140 PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos=140 G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-1,CP1252 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_haswell=83 PBS_JOBNAME=STDIN PE_LIBSCI_VOLATILE_PRGENV=CRAY GNU INTEL PGI LESSCLOSE=lessclose.sh %s %s PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/lib64 PE_LIBSCI_DEFAULT_GENCOMPS_PGI_x86_64=141 PBS_NP=16 PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=83 MORE=-sl PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp HOSTTYPE=x86_64 CRAYPE_VERSION=2.2.1 PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_interlagos=83 TERM=xterm-color PBS_MOMPORT=15003 MEMBERWORK=/lustre/atlas/scratch/adams PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI CRAY_MPICH2_DIR=/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141 PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/hdf5/1.8.13/CRAY/83/lib/pkgconfig:/opt/cray/ga/5.1.0.5/CRAY/83/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/CRAY/83/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/CRAY/83/lib/pkgconfig:/opt/cray/netcdf/4.3.2/CRAY/83/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/CRAY/83/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 LESSKEY=/etc/lesskey.bin PYTHONSTARTUP=/etc/pythonstart PBS_O_QUEUE=batch PWD=/lustre/atlas/scratch/adams/env003/petsc_maint XTOS_VERSION=5.2.40 RCLOCAL_BASEOPTS=true PE_PRODUCT_LIST=CRAY_LLM:CRAY_ALPS:ACML:CRAYPE_INTERLAGOS:CRAY_RCA:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:PGI PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/13.0.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_ACML_DIR_GNU=gfortran64 PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci CRAY_NETCDF_DIR=/opt/cray/netcdf-hdf5parallel/4.3.2 SHELL=/bin/csh PE_MPICH_NV_LIBS= PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU CRAY_MPICH2_ROOTDIR=/opt/cray/mpt/7.0.4 PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI LESS_ADVANCED_PREPROCESSOR=no PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU PRGENVMODULES=/opt/modules/3.2.6.7/init/.prgenvmodules:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi DMAPP_ABORT_ON_ERROR=1 VENDOR=suse PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI MPICH_ABORT_ON_ERROR=1 PE_ENV=PGI PE_CRAY_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/CRAY/83/lib/pkgconfig PE_MPICH_VOLATILE_PRGENV=CRAY GNU PGI PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=49 48 SDK_HOME=/usr/lib64/jvm/java PE_ACML_DEFAULT_DIR_GNU=gfortran64 PE_NETCDF_HDF5PARALLEL_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_MPICH PBS_QUEUE=batch PE_MPICH_GENCOMPS_CRAY=83 PBS_JOBID=2353226 CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -lrca PE_MPICH_TARGET_VAR_nvidia20=-lcudart MAIL=/var/mail/adams CSHRCREAD=true SSH_CONNECTION=68.49.162.216 60722 160.91.205.200 22 TOOLMODULES=/opt/modules/3.2.6.7/init/.toolmodules:apprentice:apprentice2:atp:chapel:craypat:ddt:gdb:iobuf:mrnet:papi:perftools:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview PE_MPICH_DIR_CRAY_DEFAULT64=64 PE_NETCDF_HDF5PARALLEL_FIXED_PRGENV=CRAY PGI INTEL ALTD_SELECT_ON=0 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_haswell=49 48 INPUTRC=/etc/inputrc QTDIR=/usr/lib/qt3 PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_@accelerator@ PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64=48 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=49 48 CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_LIBSCI:PE_MPICH:PE_TRILINOS:PE_LIBSCI_ACC:PE_FFTW:PE_TPSL:PE_HDF5:PE_GA:PE_PARALLEL_NETCDF:PE_HDF5_PARALLEL:PE_PETSC:PE_ACML:PE_NETCDF:PE_NETCDF_HDF5PARALLEL PE_PAPI_DEFAULT_TARGET_VAR_nvidia35=,-lcupti,-lcudart,-lcuda MPICH_DIR=/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141 PE_LIBSCI_GENCOMPS_GNU_sandybridge=49 48 PKG_CONFIG_PATH=/opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/lib64/pkgconfig:/sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/lib/pkgconfig:/lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/lib/pkgconfig:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64/pkgconfig:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64/pkgconfig:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64/pkgconfig:/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64/pkgconfig:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64/pkgconfig:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64/pkgconfig:/opt/cray/craype/2.2.1/pkg-config:/opt/cray/iobuf/2.0.5/lib/pkgconfig:/opt/cray/atp/1.7.5/lib/pkgconfig XNLSPATH=/usr/share/X11/nls PBS_O_MAIL=/var/mail/adams ALTD_VERBOSE=0 WINDOWMANAGER=/usr/bin/gnome CRAY_LLM_DIR=/opt/cray/llm/default PE_ACML_DIR_OPENMP=_mp PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=49 48 CRAY_CUDATOOLKIT_DIR=/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1 COLORTERM=1 CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/include -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include PE_MPICH_NV_LIBS_nvidia20=-lcudart DISPLAY=localhost:50.0 PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_ACML_DEFAULT_DIR_DEFAULT64=_int64 PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/mpt/7.0.4/gni/mpich2-intel/140/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=140 PBS_WALLTIME=1800 PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH OSTYPE=linux PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=49 48 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=140 PE_TPSL_DEFAULT_GENCOMPS_PGI_interlagos=141 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_HDF5_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_MPICH_GENCOMPS_GNU=49 48 PE_NETCDF_MODULE_NAME=cray-netcdf-hdf5parallel CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include -I/opt/cray-hss-devel/7.2.0/include PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_NETCDF_HDF5PARALLEL_GENCOMPS_GNU=49 48 DDT_LICENSE_FILE=/sw/sources/ddt/Licence PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64=83 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/libsci/13.0.1/PGI/141/x86_64 PE_PETSC_DEFAULT_GENCOMPS_PGI_interlagos=141 VT_FILTER_SPEC=./filter.spec PE_PGI_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib/pkgconfig TZ=US/Eastern PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY GNU PGI PE_MPICH_MULTITHREADED_LIBS_multithreaded=_mt PE_ACML_DEFAULT_DIR_PGI=pgi64 PE_LIBSCI_OMP_REQUIRES_openmp=_mp CRAY_SITE_LIST_DIR=/etc/opt/cray/modules PE_ACML_DIR_CRAY=gfortran64 RCLOCAL_PRGENV=true APRUN_XFER_LIMITS=0 PE_SMA_DIR_PGI_DEFAULT64=64 PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 WORKDIR=/tmp/work/adams PE_NETCDF_HDF5PARALLEL_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_GENCOMPS@/lib/pkgconfig PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@ PE_LIBSCI_GENCOMPS_GNU_haswell=49 48 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64 PE_NETCDF_PKGCONFIG_LIBS=netcdf_parallel DDT_HOME=/sw/xk6/ddt/4.2-35818/sles11.1_binary ================================================================================ TEST resetEnvCompilers from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1542) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1542) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1569) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1569) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1507) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1526) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1526) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:399) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:399) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:409) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:409) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:535) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:535) Locate a functional C compiler Checking for program /ccs/home/adams/git-fat/cc...not found Checking for program /opt/cray/llm/default/bin/cc...not found Checking for program /opt/cray/llm/default/etc/cc...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/cc...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/cc...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/cc...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/cc...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/cc...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/cc...not found Checking for program /ccs/home/adams/git-fat/cc...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/cc...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/cc...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/cc...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cc...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cc...not found Checking for program /sw/xk6/altd/bin/cc...not found Checking for program /sw/xk6/site-aprun/bin/cc...not found Checking for program /sw/xk6/bin/cc...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/cc...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/cc...not found Checking for program /opt/cray/atp/1.7.5/bin/cc...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/cc...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/cc...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/cc...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/cc...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/cc...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/cc...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/cc...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/cc...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/cc...not found Checking for program /opt/cray/craype/2.2.1/bin/cc...found Defined make macro "CC" to "cc" Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-ROz5N9/config.setCompilers Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Testing executable /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest Executing: /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:568) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:568) Locate a functional C preprocessor Checking for program /ccs/home/adams/git-fat/cc...not found Checking for program /opt/cray/llm/default/bin/cc...not found Checking for program /opt/cray/llm/default/etc/cc...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/cc...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/cc...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/cc...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/cc...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/cc...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/cc...not found Checking for program /ccs/home/adams/git-fat/cc...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/cc...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/cc...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/cc...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/cc...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cc...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/cc...not found Checking for program /sw/xk6/altd/bin/cc...not found Checking for program /sw/xk6/site-aprun/bin/cc...not found Checking for program /sw/xk6/bin/cc...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/cc...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/cc...not found Checking for program /opt/cray/atp/1.7.5/bin/cc...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/cc...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/cc...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/cc...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/cc...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/cc...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/cc...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/cc...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/cc...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/cc...not found Checking for program /opt/cray/craype/2.2.1/bin/cc...found Defined make macro "CPP" to "cc -E" Pushing language C Executing: cc -E -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c stdout: # 1 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c" # 1 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/confdefs.h" # 2 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c" # 1 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conffix.h" # 3 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c" # 1 "/usr/include/stdlib.h" # 17 "/usr/include/stdlib.h" # 21 "/usr/include/stdlib.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 91 "/usr/include/features.h" # 94 "/usr/include/features.h" # 120 "/usr/include/features.h" # 125 "/usr/include/features.h" # 134 "/usr/include/features.h" # 143 "/usr/include/features.h" # 151 "/usr/include/features.h" # 174 "/usr/include/features.h" # 186 "/usr/include/features.h" # 192 "/usr/include/features.h" # 199 "/usr/include/features.h" # 312 "/usr/include/features.h" # 316 "/usr/include/features.h" # 324 "/usr/include/features.h" # 329 "/usr/include/features.h" # 336 "/usr/include/features.h" # 344 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 18 "/usr/include/sys/cdefs.h" # 23 "/usr/include/sys/cdefs.h" # 30 "/usr/include/sys/cdefs.h" # 35 "/usr/include/sys/cdefs.h" # 73 "/usr/include/sys/cdefs.h" # 78 "/usr/include/sys/cdefs.h" # 83 "/usr/include/sys/cdefs.h" # 88 "/usr/include/sys/cdefs.h" # 102 "/usr/include/sys/cdefs.h" # 113 "/usr/include/sys/cdefs.h" # 123 "/usr/include/sys/cdefs.h" # 131 "/usr/include/sys/cdefs.h" # 147 "/usr/include/sys/cdefs.h" # 173 "/usr/include/sys/cdefs.h" # 198 "/usr/include/sys/cdefs.h" # 205 "/usr/include/sys/cdefs.h" # 214 "/usr/include/sys/cdefs.h" # 223 "/usr/include/sys/cdefs.h" # 232 "/usr/include/sys/cdefs.h" # 244 "/usr/include/sys/cdefs.h" # 254 "/usr/include/sys/cdefs.h" # 263 "/usr/include/sys/cdefs.h" # 271 "/usr/include/sys/cdefs.h" # 285 "/usr/include/sys/cdefs.h" # 293 "/usr/include/sys/cdefs.h" # 316 "/usr/include/sys/cdefs.h" # 325 "/usr/include/sys/cdefs.h" # 330 "/usr/include/sys/cdefs.h" # 337 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 31 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 351 "/usr/include/features.h" # 359 "/usr/include/features.h" # 370 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 2 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 4 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 26 "/usr/include/stdlib.h" # 27 "/usr/include/stdlib.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t ; # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 290 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 310 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 326 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef int wchar_t ; # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 34 "/usr/include/stdlib.h" # 97 "/usr/include/stdlib.h" typedef struct { int quot ; int rem ; } div_t ; # 104 "/usr/include/stdlib.h" # 106 "/usr/include/stdlib.h" typedef struct { long int quot ; long int rem ; } ldiv_t ; # 117 "/usr/include/stdlib.h" typedef struct { long long int quot ; long long int rem ; } lldiv_t ; # 128 "/usr/include/stdlib.h" # 133 "/usr/include/stdlib.h" # 138 "/usr/include/stdlib.h" # 140 "/usr/include/stdlib.h" extern size_t __ctype_get_mb_cur_max ( void ) ; # 144 "/usr/include/stdlib.h" extern double atof ( const char * __nptr ) ; extern int atoi ( const char * __nptr ) ; extern long int atol ( const char * __nptr ) ; # 157 "/usr/include/stdlib.h" extern long long int atoll ( const char * __nptr ) ; # 164 "/usr/include/stdlib.h" extern double strtod ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 172 "/usr/include/stdlib.h" extern float strtof ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 176 "/usr/include/stdlib.h" extern long double strtold ( const char * __restrict __nptr , char * * __restrict __endptr ) ; # 183 "/usr/include/stdlib.h" extern long int strtol ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; extern unsigned long int strtoul ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 194 "/usr/include/stdlib.h" # 196 "/usr/include/stdlib.h" extern long long int strtoq ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 201 "/usr/include/stdlib.h" extern unsigned long long int strtouq ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 208 "/usr/include/stdlib.h" # 210 "/usr/include/stdlib.h" extern long long int strtoll ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 215 "/usr/include/stdlib.h" extern unsigned long long int strtoull ( const char * __restrict __nptr , char * * __restrict __endptr , int __base ) ; # 310 "/usr/include/stdlib.h" extern char * l64a ( long int __n ) ; # 313 "/usr/include/stdlib.h" extern long int a64l ( const char * __s ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 18 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 28 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" # 30 "/usr/include/bits/types.h" typedef unsigned char __u_char ; typedef unsigned short int __u_short ; typedef unsigned int __u_int ; typedef unsigned long int __u_long ; # 36 "/usr/include/bits/types.h" typedef signed char __int8_t ; typedef unsigned char __uint8_t ; typedef signed short int __int16_t ; typedef unsigned short int __uint16_t ; typedef signed int __int32_t ; typedef unsigned int __uint32_t ; # 44 "/usr/include/bits/types.h" typedef signed long int __int64_t ; typedef unsigned long int __uint64_t ; # 51 "/usr/include/bits/types.h" # 53 "/usr/include/bits/types.h" typedef long int __quad_t ; typedef unsigned long int __u_quad_t ; # 97 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 18 "/usr/include/bits/typesizes.h" # 28 "/usr/include/bits/typesizes.h" # 62 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" # 134 "/usr/include/bits/types.h" typedef unsigned long int __dev_t ; typedef unsigned int __uid_t ; typedef unsigned int __gid_t ; typedef unsigned long int __ino_t ; typedef unsigned long int __ino64_t ; typedef unsigned int __mode_t ; typedef unsigned long int __nlink_t ; typedef long int __off_t ; typedef long int __off64_t ; typedef int __pid_t ; typedef struct { int __val [ 2 ] ; } __fsid_t ; typedef long int __clock_t ; typedef unsigned long int __rlim_t ; typedef unsigned long int __rlim64_t ; typedef unsigned int __id_t ; typedef long int __time_t ; typedef unsigned int __useconds_t ; typedef long int __suseconds_t ; # 153 "/usr/include/bits/types.h" typedef int __daddr_t ; typedef long int __swblk_t ; typedef int __key_t ; # 157 "/usr/include/bits/types.h" typedef int __clockid_t ; # 160 "/usr/include/bits/types.h" typedef void * __timer_t ; # 163 "/usr/include/bits/types.h" typedef long int __blksize_t ; # 166 "/usr/include/bits/types.h" # 168 "/usr/include/bits/types.h" typedef long int __blkcnt_t ; typedef long int __blkcnt64_t ; # 172 "/usr/include/bits/types.h" typedef unsigned long int __fsblkcnt_t ; typedef unsigned long int __fsblkcnt64_t ; # 176 "/usr/include/bits/types.h" typedef unsigned long int __fsfilcnt_t ; typedef unsigned long int __fsfilcnt64_t ; # 180 "/usr/include/bits/types.h" typedef long int __ssize_t ; # 183 "/usr/include/bits/types.h" typedef __off64_t __loff_t ; typedef __quad_t * __qaddr_t ; typedef char * __caddr_t ; # 188 "/usr/include/bits/types.h" typedef long int __intptr_t ; # 191 "/usr/include/bits/types.h" typedef unsigned int __socklen_t ; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char ; typedef __u_short u_short ; typedef __u_int u_int ; typedef __u_long u_long ; typedef __quad_t quad_t ; typedef __u_quad_t u_quad_t ; typedef __fsid_t fsid_t ; # 46 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __loff_t loff_t ; # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ino_t ino_t ; # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t ; # 67 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __gid_t gid_t ; # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __mode_t mode_t ; # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __nlink_t nlink_t ; # 82 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __uid_t uid_t ; # 88 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __off_t off_t ; # 100 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t ; # 105 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __id_t id_t ; # 110 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __ssize_t ssize_t ; # 116 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __daddr_t daddr_t ; typedef __caddr_t caddr_t ; # 123 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __key_t key_t ; # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 73 "/usr/include/time.h" # 75 "/usr/include/time.h" typedef __time_t time_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 90 "/usr/include/time.h" # 91 "/usr/include/time.h" typedef __clockid_t clockid_t ; # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 102 "/usr/include/time.h" # 103 "/usr/include/time.h" typedef __timer_t timer_t ; # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 150 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong ; typedef unsigned short int ushort ; typedef unsigned int uint ; # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 160 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 163 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef char int8_t ; typedef short int int16_t ; typedef int int32_t ; # 167 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef long int int64_t ; # 174 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned char u_int8_t ; typedef unsigned short int u_int16_t ; typedef unsigned int u_int32_t ; # 179 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int u_int64_t ; # 185 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef int register_t ; # 218 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 17 "/usr/include/endian.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/usr/include/endian.h" # 30 "/usr/include/endian.h" # 36 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 40 "/usr/include/endian.h" # 60 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 19 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 30 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 55 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 221 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 18 "/usr/include/sys/select.h" # 20 "/usr/include/sys/select.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 26 "/usr/include/sys/select.h" # 27 "/usr/include/sys/select.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 29 "/usr/include/sys/select.h" # 30 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 17 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 48 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 33 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" # 19 "/usr/include/bits/sigset.h" # 24 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t ; # 26 "/usr/include/bits/sigset.h" # 29 "/usr/include/bits/sigset.h" typedef struct { unsigned long int __val [ ( 1024 / ( 8 * sizeof ( unsigned long int ) ) ) ] ; } __sigset_t ; # 41 "/usr/include/bits/sigset.h" # 35 "/usr/include/sys/select.h" # 38 "/usr/include/sys/select.h" typedef __sigset_t sigset_t ; # 41 "/usr/include/sys/select.h" # 1 "/usr/include/time.h" # 17 "/usr/include/time.h" # 21 "/usr/include/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 117 "/usr/include/time.h" # 119 "/usr/include/time.h" struct timespec { __time_t tv_sec ; long int tv_nsec ; } ; # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 18 "/usr/include/bits/time.h" # 22 "/usr/include/bits/time.h" # 1 "/usr/include/bits/types.h" # 18 "/usr/include/bits/types.h" # 22 "/usr/include/bits/types.h" # 66 "/usr/include/bits/time.h" # 68 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec ; __suseconds_t tv_usec ; } ; # 47 "/usr/include/sys/select.h" # 49 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t ; # 54 "/usr/include/sys/select.h" typedef long int __fd_mask ; # 57 "/usr/include/sys/select.h" # 61 "/usr/include/sys/select.h" # 66 "/usr/include/sys/select.h" typedef struct { # 75 "/usr/include/sys/select.h" __fd_mask __fds_bits [ 1024 / ( 8 * ( int ) sizeof ( __fd_mask ) ) ] ; # 78 "/usr/include/sys/select.h" } fd_set ; # 80 "/usr/include/sys/select.h" # 84 "/usr/include/sys/select.h" typedef __fd_mask fd_mask ; # 87 "/usr/include/sys/select.h" # 92 "/usr/include/sys/select.h" # 108 "/usr/include/sys/select.h" extern int select ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , struct timeval * __restrict __timeout ) ; # 120 "/usr/include/sys/select.h" extern int pselect ( int __nfds , fd_set * __restrict __readfds , fd_set * __restrict __writefds , fd_set * __restrict __exceptfds , const struct timespec * __restrict __timeout , const __sigset_t * __restrict __sigmask ) ; # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 224 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 19 "/usr/include/sys/sysmacros.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 25 "/usr/include/sys/sysmacros.h" # 28 "/usr/include/sys/sysmacros.h" # 31 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_major ( unsigned long long int __dev ) ; # 34 "/usr/include/sys/sysmacros.h" extern unsigned int gnu_dev_minor ( unsigned long long int __dev ) ; # 37 "/usr/include/sys/sysmacros.h" extern unsigned long long int gnu_dev_makedev ( unsigned int __major , unsigned int __minor ) ; # 64 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 234 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 237 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t ; # 241 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsblkcnt_t fsblkcnt_t ; # 245 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __fsfilcnt_t fsfilcnt_t ; # 270 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 18 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 49 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t ; # 53 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 56 ] ; long int __align ; } pthread_attr_t ; # 61 "/usr/include/bits/pthreadtypes.h" typedef struct __pthread_internal_list { struct __pthread_internal_list * __prev ; struct __pthread_internal_list * __next ; } __pthread_list_t ; # 75 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock ; unsigned int __count ; int __owner ; # 84 "/usr/include/bits/pthreadtypes.h" unsigned int __nusers ; # 86 "/usr/include/bits/pthreadtypes.h" int __kind ; # 90 "/usr/include/bits/pthreadtypes.h" int __spins ; __pthread_list_t __list ; # 101 "/usr/include/bits/pthreadtypes.h" } __data ; char __size [ 40 ] ; long int __align ; } pthread_mutex_t ; # 106 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_mutexattr_t ; # 114 "/usr/include/bits/pthreadtypes.h" typedef union { struct { int __lock ; unsigned int __futex ; unsigned long long int __total_seq ; unsigned long long int __wakeup_seq ; unsigned long long int __woken_seq ; void * __mutex ; unsigned int __nwaiters ; unsigned int __broadcast_seq ; } __data ; char __size [ 48 ] ; long long int __align ; } pthread_cond_t ; # 132 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_condattr_t ; # 139 "/usr/include/bits/pthreadtypes.h" typedef unsigned int pthread_key_t ; # 143 "/usr/include/bits/pthreadtypes.h" typedef int pthread_once_t ; # 149 "/usr/include/bits/pthreadtypes.h" typedef union { # 153 "/usr/include/bits/pthreadtypes.h" struct { int __lock ; unsigned int __nr_readers ; unsigned int __readers_wakeup ; unsigned int __writer_wakeup ; unsigned int __nr_readers_queued ; unsigned int __nr_writers_queued ; int __writer ; int __shared ; unsigned long int __pad1 ; unsigned long int __pad2 ; unsigned int __flags ; } __data ; # 187 "/usr/include/bits/pthreadtypes.h" char __size [ 56 ] ; long int __align ; } pthread_rwlock_t ; # 191 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 8 ] ; long int __align ; } pthread_rwlockattr_t ; # 200 "/usr/include/bits/pthreadtypes.h" typedef volatile int pthread_spinlock_t ; # 205 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 32 ] ; long int __align ; } pthread_barrier_t ; # 212 "/usr/include/bits/pthreadtypes.h" typedef union { char __size [ 4 ] ; int __align ; } pthread_barrierattr_t ; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 321 "/usr/include/stdlib.h" # 325 "/usr/include/stdlib.h" extern long int random ( void ) ; # 329 "/usr/include/stdlib.h" extern void srandom ( unsigned int __seed ) ; # 335 "/usr/include/stdlib.h" extern char * initstate ( unsigned int __seed , char * __statebuf , size_t __statelen ) ; # 340 "/usr/include/stdlib.h" extern char * setstate ( char * __statebuf ) ; # 347 "/usr/include/stdlib.h" # 349 "/usr/include/stdlib.h" struct random_data { int32_t * fptr ; int32_t * rptr ; int32_t * state ; int rand_type ; int rand_deg ; int rand_sep ; int32_t * end_ptr ; } ; # 360 "/usr/include/stdlib.h" extern int random_r ( struct random_data * __restrict __buf , int32_t * __restrict __result ) ; # 363 "/usr/include/stdlib.h" extern int srandom_r ( unsigned int __seed , struct random_data * __buf ) ; # 366 "/usr/include/stdlib.h" extern int initstate_r ( unsigned int __seed , char * __restrict __statebuf , size_t __statelen , struct random_data * __restrict __buf ) ; # 371 "/usr/include/stdlib.h" extern int setstate_r ( char * __restrict __statebuf , struct random_data * __restrict __buf ) ; # 379 "/usr/include/stdlib.h" extern int rand ( void ) ; extern void srand ( unsigned int __seed ) ; # 386 "/usr/include/stdlib.h" extern int rand_r ( unsigned int * __seed ) ; # 392 "/usr/include/stdlib.h" # 394 "/usr/include/stdlib.h" extern double drand48 ( void ) ; extern double erand48 ( unsigned short int __xsubi [ 3 ] ) ; # 398 "/usr/include/stdlib.h" extern long int lrand48 ( void ) ; extern long int nrand48 ( unsigned short int __xsubi [ 3 ] ) ; # 403 "/usr/include/stdlib.h" extern long int mrand48 ( void ) ; extern long int jrand48 ( unsigned short int __xsubi [ 3 ] ) ; # 408 "/usr/include/stdlib.h" extern void srand48 ( long int __seedval ) ; extern unsigned short int * seed48 ( unsigned short int __seed16v [ 3 ] ) ; extern void lcong48 ( unsigned short int __param [ 7 ] ) ; # 417 "/usr/include/stdlib.h" struct drand48_data { unsigned short int __x [ 3 ] ; unsigned short int __old_x [ 3 ] ; unsigned short int __c ; unsigned short int __init ; unsigned long long int __a ; } ; # 427 "/usr/include/stdlib.h" extern int drand48_r ( struct drand48_data * __restrict __buffer , double * __restrict __result ) ; extern int erand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , double * __restrict __result ) ; # 434 "/usr/include/stdlib.h" extern int lrand48_r ( struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; extern int nrand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; # 443 "/usr/include/stdlib.h" extern int mrand48_r ( struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; extern int jrand48_r ( unsigned short int __xsubi [ 3 ] , struct drand48_data * __restrict __buffer , long int * __restrict __result ) ; # 452 "/usr/include/stdlib.h" extern int srand48_r ( long int __seedval , struct drand48_data * __buffer ) ; # 456 "/usr/include/stdlib.h" extern int seed48_r ( unsigned short int __seed16v [ 3 ] , struct drand48_data * __buffer ) ; # 459 "/usr/include/stdlib.h" extern int lcong48_r ( unsigned short int __param [ 7 ] , struct drand48_data * __buffer ) ; # 470 "/usr/include/stdlib.h" extern void * malloc ( size_t __size ) ; extern void * calloc ( size_t __nmemb , size_t __size ) ; # 481 "/usr/include/stdlib.h" # 484 "/usr/include/stdlib.h" extern void * realloc ( void * __ptr , size_t __size ) ; extern void free ( void * __ptr ) ; # 492 "/usr/include/stdlib.h" extern void cfree ( void * __ptr ) ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/usr/include/features.h" # 17 "/usr/include/features.h" # 23 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 10 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 14 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 19 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 26 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 30 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 39 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 53 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 56 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 60 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 98 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 108 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 126 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 128 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 131 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 167 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 170 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 243 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 246 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 361 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 395 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 29 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 33 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 39 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" extern void * __alloca ( size_t __size ) ; extern void * alloca ( size_t __size ) ; extern void * __builtin_alloca ( size_t __size ) ; # 498 "/usr/include/stdlib.h" # 501 "/usr/include/stdlib.h" extern void * valloc ( size_t __size ) ; # 506 "/usr/include/stdlib.h" extern int posix_memalign ( void * * __memptr , size_t __alignment , size_t __size ) ; # 512 "/usr/include/stdlib.h" extern void abort ( void ) __attribute__ ( ( __noreturn__ ) ) ; # 516 "/usr/include/stdlib.h" extern int atexit ( void ( * __func ) ( void ) ) ; # 534 "/usr/include/stdlib.h" extern int on_exit ( void ( * __func ) ( int __status , void * __arg ) , void * __arg ) ; # 542 "/usr/include/stdlib.h" extern void exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 558 "/usr/include/stdlib.h" extern void _Exit ( int __status ) __attribute__ ( ( __noreturn__ ) ) ; # 565 "/usr/include/stdlib.h" extern char * getenv ( const char * __name ) ; # 570 "/usr/include/stdlib.h" extern char * __secure_getenv ( const char * __name ) ; # 575 "/usr/include/stdlib.h" # 577 "/usr/include/stdlib.h" extern int putenv ( char * __string ) ; # 583 "/usr/include/stdlib.h" extern int setenv ( const char * __name , const char * __value , int __replace ) ; # 587 "/usr/include/stdlib.h" extern int unsetenv ( const char * __name ) ; # 594 "/usr/include/stdlib.h" extern int clearenv ( void ) ; # 603 "/usr/include/stdlib.h" extern char * mktemp ( char * __template ) ; # 613 "/usr/include/stdlib.h" # 615 "/usr/include/stdlib.h" extern int mkstemp ( char * __template ) ; # 635 "/usr/include/stdlib.h" # 637 "/usr/include/stdlib.h" extern int mkstemps ( char * __template , int __suffixlen ) ; # 657 "/usr/include/stdlib.h" extern char * mkdtemp ( char * __template ) ; # 711 "/usr/include/stdlib.h" extern int system ( const char * __command ) ; # 728 "/usr/include/stdlib.h" extern char * realpath ( const char * __restrict __name , char * __restrict __resolved ) ; # 734 "/usr/include/stdlib.h" # 737 "/usr/include/stdlib.h" typedef int ( * __compar_fn_t ) ( const void * , const void * ) ; # 749 "/usr/include/stdlib.h" extern void * bsearch ( const void * __key , const void * __base , size_t __nmemb , size_t __size , __compar_fn_t __compar ) ; # 755 "/usr/include/stdlib.h" extern void qsort ( void * __base , size_t __nmemb , size_t __size , __compar_fn_t __compar ) ; # 765 "/usr/include/stdlib.h" extern int abs ( int __x ) __attribute__ ( ( __const__ ) ) ; extern long int labs ( long int __x ) __attribute__ ( ( __const__ ) ) ; # 771 "/usr/include/stdlib.h" extern long long int llabs ( long long int __x ) __attribute__ ( ( __const__ ) ) ; # 778 "/usr/include/stdlib.h" extern div_t div ( int __numer , int __denom ) __attribute__ ( ( __const__ ) ) ; extern ldiv_t ldiv ( long int __numer , long int __denom ) __attribute__ ( ( __const__ ) ) ; # 788 "/usr/include/stdlib.h" extern lldiv_t lldiv ( long long int __numer , long long int __denom ) __attribute__ ( ( __const__ ) ) ; # 797 "/usr/include/stdlib.h" # 801 "/usr/include/stdlib.h" extern char * ecvt ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; # 807 "/usr/include/stdlib.h" extern char * fcvt ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; # 813 "/usr/include/stdlib.h" extern char * gcvt ( double __value , int __ndigit , char * __buf ) ; # 819 "/usr/include/stdlib.h" extern char * qecvt ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; extern char * qfcvt ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign ) ; extern char * qgcvt ( long double __value , int __ndigit , char * __buf ) ; # 831 "/usr/include/stdlib.h" extern int ecvt_r ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; extern int fcvt_r ( double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; # 839 "/usr/include/stdlib.h" extern int qecvt_r ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; extern int qfcvt_r ( long double __value , int __ndigit , int * __restrict __decpt , int * __restrict __sign , char * __restrict __buf , size_t __len ) ; # 853 "/usr/include/stdlib.h" extern int mblen ( const char * __s , size_t __n ) ; # 856 "/usr/include/stdlib.h" extern int mbtowc ( wchar_t * __restrict __pwc , const char * __restrict __s , size_t __n ) ; # 860 "/usr/include/stdlib.h" extern int wctomb ( char * __s , wchar_t __wchar ) ; # 864 "/usr/include/stdlib.h" extern size_t mbstowcs ( wchar_t * __restrict __pwcs , const char * __restrict __s , size_t __n ) ; extern size_t wcstombs ( char * __restrict __s , const wchar_t * __restrict __pwcs , size_t __n ) ; # 878 "/usr/include/stdlib.h" extern int rpmatch ( const char * __response ) ; # 903 "/usr/include/stdlib.h" # 906 "/usr/include/stdlib.h" extern int posix_openpt ( int __oflag ) ; # 941 "/usr/include/stdlib.h" extern int getloadavg ( double __loadavg [ ] , int __nelem ) ; # 947 "/usr/include/stdlib.h" # 4 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:609) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:609) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:649) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:649) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:761) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:761) Locate a functional Cxx compiler Checking for program /ccs/home/adams/git-fat/CC...not found Checking for program /opt/cray/llm/default/bin/CC...not found Checking for program /opt/cray/llm/default/etc/CC...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/CC...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/CC...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/CC...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/CC...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/CC...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/CC...not found Checking for program /ccs/home/adams/git-fat/CC...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/CC...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/CC...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/CC...not found Checking for program /opt/cray/netcdf/4.3.2/bin/CC...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/CC...not found Checking for program /sw/xk6/altd/bin/CC...not found Checking for program /sw/xk6/site-aprun/bin/CC...not found Checking for program /sw/xk6/bin/CC...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/CC...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/CC...not found Checking for program /opt/cray/atp/1.7.5/bin/CC...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/CC...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/CC...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/CC...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/CC...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/CC...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/CC...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/CC...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/CC...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/CC...not found Checking for program /opt/cray/craype/2.2.1/bin/CC...found Defined make macro "CXX" to "CC" Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Testing executable /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest Executing: /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:799) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:799) Locate a functional Cxx preprocessor Checking for program /ccs/home/adams/git-fat/CC...not found Checking for program /opt/cray/llm/default/bin/CC...not found Checking for program /opt/cray/llm/default/etc/CC...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/CC...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/CC...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/CC...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/CC...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/CC...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/CC...not found Checking for program /ccs/home/adams/git-fat/CC...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/CC...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/CC...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/CC...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/CC...not found Checking for program /opt/cray/netcdf/4.3.2/bin/CC...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/CC...not found Checking for program /sw/xk6/altd/bin/CC...not found Checking for program /sw/xk6/site-aprun/bin/CC...not found Checking for program /sw/xk6/bin/CC...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/CC...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/CC...not found Checking for program /opt/cray/atp/1.7.5/bin/CC...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/CC...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/CC...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/CC...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/CC...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/CC...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/CC...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/CC...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/CC...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/CC...not found Checking for program /opt/cray/craype/2.2.1/bin/CC...found Defined make macro "CXXCPP" to "CC -E" Pushing language Cxx Executing: CC -E -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc stdout: # 1 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc" # 1 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/confdefs.h" # 2 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc" # 1 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conffix.h" extern "C" { } # 3 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_prolog.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl_user_config.h" # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat.h" # 49 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat.h" # 63 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat.h" # 70 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat.h" # 77 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_site_config.h" # 40 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_site_config.h" # 81 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stlcomp.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 53 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 60 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 101 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 125 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 30 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 40 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 52 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 45 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 59 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 67 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 79 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 87 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 99 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 110 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 119 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 127 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 162 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 240 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/float.h" # 59 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/float.h" # 138 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 156 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 228 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 258 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 271 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 285 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 507 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_mycomp.h" # 49 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stlcomp.h" # 124 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stlcomp.h" # 84 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_confix.h" # 47 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/config/stl_confix.h" # 93 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 137 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 190 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 201 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 209 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 217 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 225 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 233 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 293 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 305 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 331 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 382 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 408 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 419 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 429 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 454 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 467 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 490 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" namespace std { } namespace __std_alias = std; # 515 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 527 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 548 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 559 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" namespace std { } namespace stlport = std; # 597 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 664 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 700 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 714 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 732 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 763 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 778 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 799 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 816 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 833 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 847 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 864 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 889 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 920 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 931 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 969 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1018 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1045 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1055 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 1074 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config.h" # 22 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_prolog.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" # 1 "/usr/include/stdlib.h" # 1 "/usr/include/features.h" # 118 "/usr/include/features.h" # 141 "/usr/include/features.h" # 150 "/usr/include/features.h" # 172 "/usr/include/features.h" # 182 "/usr/include/features.h" # 214 "/usr/include/features.h" # 264 "/usr/include/features.h" # 311 "/usr/include/features.h" # 343 "/usr/include/features.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 1 "/usr/include/sys/cdefs.h" # 60 "/usr/include/sys/cdefs.h" # 96 "/usr/include/sys/cdefs.h" # 111 "/usr/include/sys/cdefs.h" # 121 "/usr/include/sys/cdefs.h" # 146 "/usr/include/sys/cdefs.h" # 158 "/usr/include/sys/cdefs.h" # 195 "/usr/include/sys/cdefs.h" # 231 "/usr/include/sys/cdefs.h" # 261 "/usr/include/sys/cdefs.h" # 284 "/usr/include/sys/cdefs.h" # 314 "/usr/include/sys/cdefs.h" # 347 "/usr/include/sys/cdefs.h" # 1 "/usr/include/bits/wordsize.h" # 354 "/usr/include/sys/cdefs.h" # 386 "/usr/include/sys/cdefs.h" # 15 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/cdefs.h" # 348 "/usr/include/features.h" # 1 "/usr/include/gnu/stubs.h" # 1 "/usr/include/bits/wordsize.h" # 5 "/usr/include/gnu/stubs.h" # 1 "/usr/include/gnu/stubs-64.h" # 10 "/usr/include/gnu/stubs.h" # 372 "/usr/include/features.h" # 26 "/usr/include/stdlib.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 50 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 96 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 121 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 166 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 214 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" typedef unsigned long int size_t; # 238 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 347 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 359 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 392 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 410 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 417 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 36 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 56 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 34 "/usr/include/stdlib.h" extern "C" { # 95 "/usr/include/stdlib.h" typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) throw() ; extern double atof (const char *__nptr) throw() ; extern int atoi (const char *__nptr) throw() ; extern long int atol (const char *__nptr) throw() ; extern long long int atoll (const char *__nptr) throw() ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw() ; extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw() ; extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw() ; extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw() ; extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw() ; # 205 "/usr/include/stdlib.h" extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw() ; extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw() ; # 274 "/usr/include/stdlib.h" # 305 "/usr/include/stdlib.h" extern char *l64a (long int __n) throw() ; extern long int a64l (const char *__s) throw() ; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" extern "C" { # 1 "/usr/include/bits/types.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/types.h" typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" # 126 "/usr/include/bits/types.h" # 1 "/usr/include/bits/typesizes.h" # 61 "/usr/include/bits/typesizes.h" # 132 "/usr/include/bits/types.h" typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" extern "C" { char *strptime (const char * , const char *, struct tm *); } # 1 "/usr/include/time.h" # 33 "/usr/include/time.h" # 52 "/usr/include/time.h" # 68 "/usr/include/time.h" typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" # 420 "/usr/include/time.h" # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 134 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 145 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 50 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 96 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 121 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 166 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 238 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 347 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 359 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 392 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 410 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 417 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 36 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 56 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 148 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; typedef char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char u_int8_t; typedef unsigned short int u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long int u_int64_t; typedef int register_t; # 215 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/endian.h" # 1 "/usr/include/bits/endian.h" # 38 "/usr/include/endian.h" # 51 "/usr/include/endian.h" # 1 "/usr/include/bits/byteswap.h" # 1 "/usr/include/bits/wordsize.h" # 29 "/usr/include/bits/byteswap.h" # 47 "/usr/include/bits/byteswap.h" # 97 "/usr/include/bits/byteswap.h" # 136 "/usr/include/bits/byteswap.h" # 62 "/usr/include/endian.h" # 95 "/usr/include/endian.h" # 220 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/select.h" # 1 "/usr/include/bits/select.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/select.h" # 46 "/usr/include/bits/select.h" # 56 "/usr/include/bits/select.h" # 32 "/usr/include/sys/select.h" # 1 "/usr/include/bits/sigset.h" typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" typedef __sigset_t sigset_t; # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 35 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" extern "C" { # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" } # 1 "/usr/include/time.h" # 33 "/usr/include/time.h" # 52 "/usr/include/time.h" # 68 "/usr/include/time.h" # 84 "/usr/include/time.h" # 96 "/usr/include/time.h" # 108 "/usr/include/time.h" struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" # 62 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 72 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/time.h" # 45 "/usr/include/sys/select.h" # 1 "/usr/include/bits/time.h" # 60 "/usr/include/bits/time.h" struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern "C" { extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 223 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/sys/sysmacros.h" # 69 "/usr/include/sys/sysmacros.h" # 226 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" # 1 "/usr/include/bits/pthreadtypes.h" # 1 "/usr/include/bits/wordsize.h" # 24 "/usr/include/bits/pthreadtypes.h" # 46 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; unsigned long long int __total_seq; unsigned long long int __wakeup_seq; unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 273 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/sys/types.h" } # 321 "/usr/include/stdlib.h" extern long int random (void) throw(); extern void srandom (unsigned int __seed) throw(); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw() ; extern char *setstate (char *__statebuf) throw() ; struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw() ; extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw() ; extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw() ; extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw() ; extern int rand (void) throw(); extern void srand (unsigned int __seed) throw(); extern int rand_r (unsigned int *__seed) throw(); extern double drand48 (void) throw(); extern double erand48 (unsigned short int __xsubi[3]) throw() ; extern long int lrand48 (void) throw(); extern long int nrand48 (unsigned short int __xsubi[3]) throw() ; extern long int mrand48 (void) throw(); extern long int jrand48 (unsigned short int __xsubi[3]) throw() ; extern void srand48 (long int __seedval) throw(); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw() ; extern void lcong48 (unsigned short int __param[7]) throw() ; struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw() ; extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw() ; extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw() ; extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw() ; extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw() ; extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw() ; extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw() ; extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw() ; extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw() ; extern void *malloc (size_t __size) throw() ; extern void *calloc (size_t __nmemb, size_t __size) throw() ; extern void *realloc (void *__ptr, size_t __size) throw() ; extern void free (void *__ptr) throw(); extern void cfree (void *__ptr) throw(); # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 32 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 50 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 96 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 121 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 166 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 238 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 347 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 359 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 392 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 410 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 417 "/usr/lib64/gcc/x86_64-suse-linux/4.3/include/stddef.h" # 17 "/opt/pgi/14.2.0/linux86-64/14.2/include-gcc44/stddef.h" # 36 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 56 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stddef.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include/alloca.h" extern "C" { extern "C" { extern void * __alloca (size_t __size); extern void * alloca (size_t __size); extern void * __builtin_alloca (size_t __size); } } # 498 "/usr/include/stdlib.h" extern void *valloc (size_t __size) throw() ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw() ; extern void abort (void) throw() __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw() ; # 530 "/usr/include/stdlib.h" extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw() ; extern void exit (int __status) throw() __attribute__ ((__noreturn__)); # 553 "/usr/include/stdlib.h" extern void _Exit (int __status) throw() __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw() ; extern char *__secure_getenv (const char *__name) throw() ; extern int putenv (char *__string) throw() ; extern int setenv (const char *__name, const char *__value, int __replace) throw() ; extern int unsetenv (const char *__name) throw(); extern int clearenv (void) throw(); extern char *mktemp (char *__template) throw() ; extern int mkstemp (char *__template) ; # 628 "/usr/include/stdlib.h" extern int mkstemps (char *__template, int __suffixlen) ; # 651 "/usr/include/stdlib.h" extern char *mkdtemp (char *__template) throw() ; # 705 "/usr/include/stdlib.h" extern int system (const char *__command) ; # 722 "/usr/include/stdlib.h" extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw() ; typedef int (*__compar_fn_t) (const void *, const void *); # 746 "/usr/include/stdlib.h" extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) ; extern int abs (int __x) throw() __attribute__ ((__const__)) ; extern long int labs (long int __x) throw() __attribute__ ((__const__)) ; extern long long int llabs (long long int __x) throw() __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw() __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw() __attribute__ ((__const__)) ; extern lldiv_t lldiv (long long int __numer, long long int __denom) throw() __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw() ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw() ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw() ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw() ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw() ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw() ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw() ; extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw() ; extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw() ; extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw() ; extern int mblen (const char *__s, size_t __n) throw() ; extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw() ; extern int wctomb (char *__s, wchar_t __wchar) throw() ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw(); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw(); extern int rpmatch (const char *__response) throw() ; # 895 "/usr/include/stdlib.h" extern int posix_openpt (int __oflag) ; # 926 "/usr/include/stdlib.h" # 937 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) throw() ; # 954 "/usr/include/stdlib.h" } # 39 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" # 50 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" namespace std { using ::div_t; using ::ldiv_t; using ::size_t; using ::abort; using ::atexit; using ::exit; using ::getenv; using ::calloc; using ::free; using ::malloc; using ::realloc; using ::atof; using ::atoi; using ::atol; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; using ::bsearch; using ::qsort; using ::abs; using ::div; using ::labs; using ::ldiv; using ::rand; using ::srand; } namespace std { inline long abs(long __x) { return ::labs(__x); } inline ldiv_t div(long __x, long __y) { return ::ldiv(__x, __y); } inline long long abs(long long __x) { return __x >= 0 ? __x : -__x; } } # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_epilog.h" # 1 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat_post.h" # 38 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_config_compat_post.h" # 26 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_epilog.h" # 45 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/stl/_epilog.h" # 120 "/opt/pgi/14.2.0/linux86-64/14.2/include/CC/cstdlib" # 4 "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:916) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:916) Locate a functional Fortran compiler Checking for program /ccs/home/adams/git-fat/ftn...not found Checking for program /opt/cray/llm/default/bin/ftn...not found Checking for program /opt/cray/llm/default/etc/ftn...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/ftn...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/ftn...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ftn...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ftn...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ftn...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ftn...not found Checking for program /ccs/home/adams/git-fat/ftn...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ftn...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ftn...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ftn...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ftn...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ftn...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/ftn...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ftn...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ftn...not found Checking for program /sw/xk6/altd/bin/ftn...not found Checking for program /sw/xk6/site-aprun/bin/ftn...not found Checking for program /sw/xk6/bin/ftn...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ftn...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ftn...not found Checking for program /opt/cray/atp/1.7.5/bin/ftn...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ftn...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ftn...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ftn...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ftn...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ftn...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ftn...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ftn...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ftn...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ftn...not found Checking for program /opt/cray/craype/2.2.1/bin/ftn...found Defined make macro "FC" to "ftn" Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Testing executable /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest to see if it can be run Executing: /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest Executing: /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:937) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:937) Make sure fortran comment "!" works Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1000) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1000) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Skip checking PIC options on user request ================================================================================ TEST checkLargeFileIO from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1033) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1033) ================================================================================ TEST checkArchiver from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1132) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1132) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /ccs/home/adams/git-fat/ar...not found Checking for program /opt/cray/llm/default/bin/ar...not found Checking for program /opt/cray/llm/default/etc/ar...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/ar...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/ar...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ar...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ar...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ar...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ar...not found Checking for program /ccs/home/adams/git-fat/ar...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ar...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ar...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/ar...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ar...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ar...not found Checking for program /sw/xk6/altd/bin/ar...not found Checking for program /sw/xk6/site-aprun/bin/ar...not found Checking for program /sw/xk6/bin/ar...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ar...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ar...not found Checking for program /opt/cray/atp/1.7.5/bin/ar...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ar...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ar...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ar...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ar...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ar...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ar...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ar...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ar...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ar...not found Checking for program /opt/cray/craype/2.2.1/bin/ar...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/ar...not found Checking for program /opt/modules/3.2.6.7/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /ccs/home/adams/git-fat/ranlib...not found Checking for program /opt/cray/llm/default/bin/ranlib...not found Checking for program /opt/cray/llm/default/etc/ranlib...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/ranlib...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/ranlib...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ranlib...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ranlib...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ranlib...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ranlib...not found Checking for program /ccs/home/adams/git-fat/ranlib...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ranlib...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ranlib...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/ranlib...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ranlib...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ranlib...not found Checking for program /sw/xk6/altd/bin/ranlib...not found Checking for program /sw/xk6/site-aprun/bin/ranlib...not found Checking for program /sw/xk6/bin/ranlib...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ranlib...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ranlib...not found Checking for program /opt/cray/atp/1.7.5/bin/ranlib...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ranlib...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ranlib...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ranlib...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ranlib...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ranlib...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ranlib...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ranlib...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ranlib...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ranlib...not found Checking for program /opt/cray/craype/2.2.1/bin/ranlib...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/ranlib...not found Checking for program /opt/modules/3.2.6.7/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/scratch/petsc-ROz5N9/config.setCompilers/libconf1.a /tmp/scratch/petsc-ROz5N9/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/scratch/petsc-ROz5N9/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /ccs/home/adams/git-fat/ar...not found Checking for program /opt/cray/llm/default/bin/ar...not found Checking for program /opt/cray/llm/default/etc/ar...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/ar...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/ar...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ar...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ar...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ar...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ar...not found Checking for program /ccs/home/adams/git-fat/ar...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ar...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ar...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ar...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/ar...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ar...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ar...not found Checking for program /sw/xk6/altd/bin/ar...not found Checking for program /sw/xk6/site-aprun/bin/ar...not found Checking for program /sw/xk6/bin/ar...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ar...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ar...not found Checking for program /opt/cray/atp/1.7.5/bin/ar...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ar...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ar...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ar...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ar...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ar...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ar...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ar...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ar...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ar...not found Checking for program /opt/cray/craype/2.2.1/bin/ar...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/ar...not found Checking for program /opt/modules/3.2.6.7/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /ccs/home/adams/git-fat/ranlib...not found Checking for program /opt/cray/llm/default/bin/ranlib...not found Checking for program /opt/cray/llm/default/etc/ranlib...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/ranlib...not found Checking for program /opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/ranlib...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/sbin/ranlib...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9479.20.1.gem/bin/ranlib...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/ranlib...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/ranlib...not found Checking for program /ccs/home/adams/git-fat/ranlib...not found Checking for program /sw/xk6/python/2.7.9/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /lustre/atlas/sw/xk7/python/2.7.9/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/ranlib...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/ranlib...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/ranlib...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/ranlib...not found Checking for program /opt/cray/netcdf/4.3.2/bin/ranlib...not found Checking for program /sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin/ranlib...not found Checking for program /sw/xk6/altd/bin/ranlib...not found Checking for program /sw/xk6/site-aprun/bin/ranlib...not found Checking for program /sw/xk6/bin/ranlib...not found Checking for program /sw/xk6/lustredu/1.4/sles11.3_gnu4.8.2/bin/ranlib...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/ranlib...not found Checking for program /opt/cray/atp/1.7.5/bin/ranlib...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/ranlib...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/ranlib...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0502.54585.3.66.gem/bin/ranlib...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/ranlib...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/ranlib...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/ranlib...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/ranlib...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/ranlib...not found Checking for program /opt/pgi/14.2.0/linux86-64/14.2/bin/ranlib...not found Checking for program /opt/cray/craype/2.2.1/bin/ranlib...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/ranlib...not found Checking for program /opt/modules/3.2.6.7/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/scratch/petsc-ROz5N9/config.setCompilers/libconf1.a /tmp/scratch/petsc-ROz5N9/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/scratch/petsc-ROz5N9/config.setCompilers/libconf1.a Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -L/tmp/scratch/petsc-ROz5N9/config.setCompilers -lconf1 Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1243) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1243) Check that the linker can produce shared libraries Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Executing: /usr/bin/ar cr /tmp/scratch/petsc-ROz5N9/config.setCompilers/libconftest.a /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o ; /usr/bin/ranlib /tmp/scratch/petsc-ROz5N9/config.setCompilers/libconftest.a Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -L/tmp/scratch/petsc-ROz5N9/config.setCompilers -lconftest Using shared linker /usr/bin/ar with flags [] and library extension a ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1321) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1321) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Trying C linker flag -Wl,-rpath, Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc_maint /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc_maint Popping language C Pushing language Cxx Trying Cxx linker flag -Wl,-rpath, Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc_maint /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc_maint Popping language Cxx Pushing language FC Trying FC linker flag -Wl,-rpath, Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: ftn -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc_maint /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/lustre/atlas2/env003/scratch/adams/petsc_maint Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1356) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1356) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1405) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1405) Check that the linker can dynamicaly load shared libraries Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: /usr/bin/ar -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/libconftest.so /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: /usr/bin/ar: creating /tmp/scratch/petsc-ROz5N9/config.setCompilers/libconftest.so Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/scratch/petsc-ROz5N9/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/bin/ar with flags [] and library extension so ================================================================================ TEST output from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1451) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1451) Output module data as defines and substitutions Substituting "CC" with "cc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "cc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "CC" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "CC -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "ftn" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) Pushing language C Executing: cc --version stdout: pgcc 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Executing: cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -mp -fast Popping language C Pushing language Cxx Executing: CC --version stdout: pgCC 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Executing: CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -mp -fast Popping language Cxx Pushing language FC Executing: ftn --version stdout: pgf90 14.2-0 64-bit target on x86-64 Linux -tp bulldozer The Portland Group - PGI Compilers and Tools Copyright (c) 2014, NVIDIA CORPORATION. All rights reserved. Executing: ftn --help stdout: Usage: ftn [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: ftn --help stdout: Usage: ftn [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -mp -fast Popping language FC ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilerFlags.py:71) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:71) Get the default compiler flags Trying C compiler flag -mp -fast Trying Cxx compiler flag -mp -fast Trying FC compiler flag -mp -fast Checking for functions [__floatdidf] in library ['-lgcc_s.1'] [] Pushing language C Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.libraries/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __floatdidf(); static void _check___floatdidf() { __floatdidf(); } int main() { _check___floatdidf();; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.libraries/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.libraries/conftest.o -lgcc_s.1 -ldl Possible ERROR while running linker: exit code 512 stderr: /usr/bin/ld: cannot find -lgcc_s.1 Popping language C Executing: uname -s ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined "USE_64BIT_INDICES" to "1" Defined make macro "PETSC_INDEX_SIZE" to "64" stdout: Linux ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureDebugging from PETSc.options.debugging(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MMD -MP /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: pgcc-Error-Unknown switch: -MP Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to pgcc-Error-Unknown switch: -MP PETSc Error: No output file produced Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MMD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -xMMD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: pgcc-Error-Unknown switch: -xMMD Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to pgcc-Error-Unknown switch: -xMMD PETSc Error: No output file produced Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -qmakedep=gcc /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: pgcc-Error-Unknown switch: -qmakedep=gcc Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to pgcc-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MMD -MP /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: pgCC-Error-Unknown switch: -MP Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to pgCC-Error-Unknown switch: -MP PETSc Error: No output file produced Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MMD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -xMMD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: pgCC-Error-Unknown switch: -xMMD Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to pgCC-Error-Unknown switch: -xMMD PETSc Error: No output file produced Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -qmakedep=gcc /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: pgCC-Error-Unknown switch: -qmakedep=gcc Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to pgCC-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc stdout: conftest.o : /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc \ /opt/pgi/14.2.0/linux86-64/14.2/include/omp.h \ /tmp/scratch/petsc-ROz5N9/config.setCompilers/confdefs.h \ /tmp/scratch/petsc-ROz5N9/config.setCompilers/conffix.h Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MMD -MP /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -MMD pgf90-Error-Unknown switch: -MP Source: program main end Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to pgf90-Error-Unknown switch: -MMD pgf90-Error-Unknown switch: -MP PETSc Error: No output file produced Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MMD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -MMD Source: program main end Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to pgf90-Error-Unknown switch: -MMD PETSc Error: No output file produced Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -xMMD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -xMMD Source: program main end Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to pgf90-Error-Unknown switch: -xMMD PETSc Error: No output file produced Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -qmakedep=gcc /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -qmakedep=gcc Source: program main end Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to pgf90-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -MD /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: pgf90-Error-Unknown switch: -MD Source: program main end Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to pgf90-Error-Unknown switch: -MD PETSc Error: No output file produced Popping language FC Pushing language C Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { int x[2],y; y = 5; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Popping language C Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc", line 4: catastrophic error: cannot open source file "random" #include ^ 1 catastrophic error detected in the compilation of "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc", line 4: catastrophic error: cannot open source file "random" #include ^ 1 catastrophic error detected in the compilation of "/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.cc". Compilation terminated. PETSc Error: No output file produced Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast -DTesting /tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Fortran could not successfully link C++ objects ******************************************************************************* File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/framework.py", line 955, in processChildren child.configure() File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py", line 1428, in configure self.executeTest(self.checkFortranLinkingCxx) File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py", line 1094, in checkFortranLinkingCxx raise RuntimeError('Fortran could not successfully link C++ objects') ================================================================================ TEST checkRestrict from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-ROz5N9/config.compilers Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } compilers: Set C restrict keyword to restrict Defined "C_RESTRICT" to "restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:310) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:310) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:321) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:321) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: cc -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:1328) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1328) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Rejected C compiler flag -MMD because no dependency file (/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.d) was generated Trying C compiler flag -xMMD Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Rejected C compiler flag -MD because no dependency file (/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -MMD -MP Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Rejected Cxx compiler flag -MMD because no dependency file (/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -xMMD Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Rejected Cxx compiler flag -MD because no dependency file (/tmp/scratch/petsc-ROz5N9/config.setCompilers/conftest.d) was generated Trying FC compiler flag -MMD -MP Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Rejected FC compiler flag -MMD Trying FC compiler flag -xMMD Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Rejected FC compiler flag -MD ================================================================================ TEST checkC99Flag from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:1372) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1372) Check for -std=c99 or equivalent flag ================================================================================ TEST checkRestrict from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: "/tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc", line 5: error: expected a ";" float * restrict x;; ^ "/tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc", line 5: warning: variable "restrict" was declared but never referenced float * restrict x;; ^ 1 error detected in the compilation of "/tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc". Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc", line 5: warning: variable "x" was declared but never referenced float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:359) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:359) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:334) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:334) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ ================================================================================ TEST checkCxxStaticInline from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxx11 from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:374) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:374) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. ================================================================================ TEST checkFortranTypeSizes from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:572) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:572) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:631) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:631) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Executing: ftn -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o /tmp/scratch/petsc-ROz5N9/config.compilers/confc.o -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:668) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:668) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: cc -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.libraries -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -I/tmp/scratch/petsc-ROz5N9/config.compilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Executing: ftn -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o /tmp/scratch/petsc-ROz5N9/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o: In function `main': /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.F:2: undefined reference to `d1_chk_' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-ROz5N9/config.compilers/conftest' Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:678) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:678) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:699) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:699) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/compilers.py:1062) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1062) Check that Fortran can be linked against C++ Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Executing: ftn -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o /tmp/scratch/petsc-ROz5N9/config.compilers/cxxobj.o /tmp/scratch/petsc-ROz5N9/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-ROz5N9/config.compilers/cxxobj.o:(.eh_frame+0x12): undefined reference to `__gxx_personality_v0' /tmp/scratch/petsc-ROz5N9/config.compilers/confc.o:(.eh_frame+0x12): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-ROz5N9/config.compilers/conftest' Popping language FC Pushing language Cxx Executing: CC -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: ftn -c -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o -I/tmp/scratch/petsc-ROz5N9/config.compilers -I/tmp/scratch/petsc-ROz5N9/config.setCompilers -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Executing: ftn -o /tmp/scratch/petsc-ROz5N9/config.compilers/conftest -mp -fast /tmp/scratch/petsc-ROz5N9/config.compilers/conftest.o /tmp/scratch/petsc-ROz5N9/config.compilers/cxxobj.o /tmp/scratch/petsc-ROz5N9/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 512 stderr: /tmp/scratch/petsc-ROz5N9/config.compilers/cxxobj.o:(.eh_frame+0x12): undefined reference to `__gxx_personality_v0' /tmp/scratch/petsc-ROz5N9/config.compilers/confc.o:(.eh_frame+0x12): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/scratch/petsc-ROz5N9/config.compilers/conftest' Popping language FC Fortran could not successfully link C++ objects **** Configure header /tmp/scratch/petsc-ROz5N9/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-titan-opt64idx-pgi" #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_USE_64BIT_INDICES #define PETSC_USE_64BIT_INDICES 1 #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2015-05-12 12:32:46 -0500" #endif #ifndef PETSC_VERSION_BRANCH_GIT #define PETSC_VERSION_BRANCH_GIT "master" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "v3.5.3-2932-g3b52111" #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #endif **** C specific Configure header /tmp/scratch/petsc-ROz5N9/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Fortran could not successfully link C++ objects ******************************************************************************* File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/configure.py", line 329, in petsc_configure framework.configure(out = sys.stdout) File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/framework.py", line 1081, in configure self.processChildren() File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/framework.py", line 1068, in processChildren self.parallelQueueEvaluation(self.childGraph, script.useThreads) File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/framework.py", line 1030, in parallelQueueEvaluation raise RuntimeError(emsg) ================================================================================ Finishing Configure Run at Thu May 14 09:09:01 2015 ================================================================================