Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Fri Apr 24 11:25:48 2015 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --download-fblaslapack=1 --download-metis --download-mumps --download-parmetis --download-plapack --download-scalapack --download-suitesparse --download-superlu --download-superlu_dist --with-clanguage=C++ --with-debugging=0 --with-fortran-kernels=1 --with-scalar-type=complex CFLAGS=-03 PETSC_ARCH=opt-complex Working directory: /home/d3m956/petsc-std Machine platform: ('Linux', 'gridpack1', '3.10.0-123.20.1.el7.x86_64', '#1 SMP Wed Jan 21 09:45:55 EST 2015', 'x86_64', 'x86_64') Python version: 2.7.5 (default, Feb 11 2014, 07:46:25) [GCC 4.8.2 20140120 (Red Hat 4.8.2-13)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/d3m956/petsc-std/config/BuildSystem/config/framework.py:829) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:829) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/d3m956/petsc-std/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /usr/local/sbin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /usr/local/openmpi/bin/dbx...not found Checking for program /home/d3m956/.local/bin/dbx...not found Checking for program /home/d3m956/bin/dbx...not found Checking for program /home/d3m956/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /usr/local/sbin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /usr/local/openmpi/bin/xdb...not found Checking for program /home/d3m956/.local/bin/xdb...not found Checking for program /home/d3m956/bin/xdb...not found Checking for program /home/d3m956/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /usr/local/sbin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /usr/local/openmpi/bin/dsymutil...not found Checking for program /home/d3m956/.local/bin/dsymutil...not found Checking for program /home/d3m956/bin/dsymutil...not found Checking for program /home/d3m956/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/home/d3m956/petsc-std/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.3.1 ================================================================================ TEST configureMercurial from config.sourceControl(/home/d3m956/petsc-std/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/local/openmpi/bin/hg...not found Checking for program /home/d3m956/.local/bin/hg...not found Checking for program /home/d3m956/bin/hg...not found Checking for program /home/d3m956/hg...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/d3m956/petsc-std/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /usr/local/sbin/cvs...not found Checking for program /usr/sbin/cvs...not found Checking for program /usr/local/openmpi/bin/cvs...not found Checking for program /home/d3m956/.local/bin/cvs...not found Checking for program /home/d3m956/bin/cvs...not found Checking for program /home/d3m956/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/d3m956/petsc-std/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.7.14 ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/d3m956/petsc-std/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is Cxx Defined "CLANGUAGE_CXX" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/d3m956/petsc-std/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 5 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/d3m956/petsc-std" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/home/d3m956/petsc-std/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) bin/maint exists. This appears to be a repository clone Defined "VERSION_GIT" to ""v3.5.3-51-geca4a45"" Defined "VERSION_DATE_GIT" to ""2015-04-23 13:58:55 -0500"" Defined "VERSION_BRANCH_GIT" to ""maint"" ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/d3m956/petsc-std/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/d3m956/petsc-std/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise WARNING: ETags files have not been created Checking for program /usr/local/bin/etags...not found Checking for program /usr/bin/etags...not found Checking for program /usr/local/sbin/etags...not found Checking for program /usr/sbin/etags...not found Checking for program /usr/local/openmpi/bin/etags...not found Checking for program /home/d3m956/.local/bin/etags...not found Checking for program /home/d3m956/bin/etags...not found Checking for program /home/d3m956/etags...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/etags...not found The etags command is not in your path, cannot build etags files ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/d3m956/petsc-std/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""opt-complex"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/home/d3m956/petsc-std/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/home/d3m956/petsc-std/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/home/d3m956/petsc-std/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/home/d3m956/petsc-std/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /home/d3m956/petsc-std/opt-complex/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/home/d3m956/petsc-std/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/home/d3m956/petsc-std/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/home/d3m956/petsc-std/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py:1527) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1527) **** printenv **** LOADEDMODULES= SCALA= BLAS=-lblas LESSOPEN=||/usr/bin/lesspipe.sh %s SSH_CLIENT=130.20.35.206 53181 22 SELINUX_USE_CURRENT_RANGE= LOGNAME=d3m956 USER=d3m956 HOME=/home/d3m956 PATH=/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/local/openmpi/bin/:/home/d3m956/.local/bin:/home/d3m956/bin LD_LIBRARY_PATH=/usr/local/openmpi/lib: LANG=en_US.UTF-8 TERM=xterm SHELL=/bin/bash LAPACK=-llapack ARMCI_NETWORK=SOCKETS HISTSIZE=1000 OPT_FLAGS=-O3 MPI_DIR=/usr/local/openmpi MODULESHOME=/usr/share/Modules XDG_RUNTIME_DIR=/run/user/1002 CC=gcc SELINUX_ROLE_REQUESTED= BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*` } F77=gfortan XDG_SESSION_ID=13698 _=./reconfigure-opt-complex.py MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles SSH_CONNECTION=130.20.35.206 53181 130.20.35.237 22 TARGET=LINUX64 CXX=g++ SSH_TTY=/dev/pts/5 OLDPWD=/home/d3m956 HOSTNAME=gridpack1 SELINUX_LEVEL_REQUESTED= HISTCONTROL=ignoredups SHLVL=1 PWD=/home/d3m956/petsc-std FC=gfortran MAIL=/var/spool/mail/d3m956 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36: ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py:1534) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1534) =============================================================================== ***** WARNING: CC (set to gcc) found in environment variables - ignoring use ./configure CC=$CC if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: CXX (set to g++) found in environment variables - ignoring use ./configure CXX=$CXX if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: FC (set to gfortran) found in environment variables - ignoring use ./configure FC=$FC if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: F77 (set to gfortan) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: MPI_DIR (set to /usr/local/openmpi) found in environment variables - ignoring use ./configure MPI_DIR=$MPI_DIR if you really want to use that value ****** =============================================================================== ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py:1499) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1499) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py:1518) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1518) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py:398) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:398) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py:408) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:408) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to -03 Initialized CFLAGS to -03 Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py:534) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:534) Locate a functional C compiler Executing: mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /usr/local/bin/mpicc...not found Checking for program /usr/bin/mpicc...not found Checking for program /usr/local/sbin/mpicc...not found Checking for program /usr/sbin/mpicc...not found Checking for program /usr/local/openmpi/bin/mpicc...found Defined make macro "CC" to "mpicc" Pushing language C All intermediate test results are stored in /tmp/petsc-ZabDcK All intermediate test results are stored in /tmp/petsc-ZabDcK/config.setCompilers Executing: mpicc -c -o /tmp/petsc-ZabDcK/config.setCompilers/conftest.o -I/tmp/petsc-ZabDcK/config.setCompilers -03 /tmp/petsc-ZabDcK/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: gcc: error: unrecognized command line option ‘-03’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with mpicc. MPI installation mpicc is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CC" Executing: hcc --help Checking for program /usr/local/bin/hcc...not found Checking for program /usr/bin/hcc...not found Checking for program /usr/local/sbin/hcc...not found Checking for program /usr/sbin/hcc...not found Checking for program /usr/local/openmpi/bin/hcc...not found Checking for program /home/d3m956/.local/bin/hcc...not found Checking for program /home/d3m956/bin/hcc...not found Checking for program /home/d3m956/hcc...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/hcc...not found Checking for program /usr/local/bin/mpcc_r...not found Checking for program /usr/bin/mpcc_r...not found Checking for program /usr/local/sbin/mpcc_r...not found Checking for program /usr/sbin/mpcc_r...not found Checking for program /usr/local/openmpi/bin/mpcc_r...not found Checking for program /home/d3m956/.local/bin/mpcc_r...not found Checking for program /home/d3m956/bin/mpcc_r...not found Checking for program /home/d3m956/mpcc_r...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/mpcc_r...not found Checking for program /usr/local/bin/mpcc...not found Checking for program /usr/bin/mpcc...not found Checking for program /usr/local/sbin/mpcc...not found Checking for program /usr/sbin/mpcc...not found Checking for program /usr/local/openmpi/bin/mpcc...not found Checking for program /home/d3m956/.local/bin/mpcc...not found Checking for program /home/d3m956/bin/mpcc...not found Checking for program /home/d3m956/mpcc...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/mpcc...not found Checking for program /usr/local/bin/mpxlc...not found Checking for program /usr/bin/mpxlc...not found Checking for program /usr/local/sbin/mpxlc...not found Checking for program /usr/sbin/mpxlc...not found Checking for program /usr/local/openmpi/bin/mpxlc...not found Checking for program /home/d3m956/.local/bin/mpxlc...not found Checking for program /home/d3m956/bin/mpxlc...not found Checking for program /home/d3m956/mpxlc...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/mpxlc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C Executing: gcc -c -o /tmp/petsc-ZabDcK/config.setCompilers/conftest.o -I/tmp/petsc-ZabDcK/config.setCompilers -03 /tmp/petsc-ZabDcK/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: gcc: error: unrecognized command line option ‘-03’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with gcc. Deleting "CC" Executing: cc --help stdout: Usage: cc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by cc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /usr/local/bin/cc...not found Checking for program /usr/bin/cc...found Defined make macro "CC" to "cc" Pushing language C Executing: cc -c -o /tmp/petsc-ZabDcK/config.setCompilers/conftest.o -I/tmp/petsc-ZabDcK/config.setCompilers -03 /tmp/petsc-ZabDcK/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: cc: error: unrecognized command line option ‘-03’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with cc. Deleting "CC" Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /usr/local/sbin/win32fe...not found Checking for program /usr/sbin/win32fe...not found Checking for program /usr/local/openmpi/bin/win32fe...not found Checking for program /home/d3m956/.local/bin/win32fe...not found Checking for program /home/d3m956/bin/win32fe...not found Checking for program /home/d3m956/win32fe...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/win32fe...not found Checking for program /usr/local/bin/kcc...not found Checking for program /usr/bin/kcc...not found Checking for program /usr/local/sbin/kcc...not found Checking for program /usr/sbin/kcc...not found Checking for program /usr/local/openmpi/bin/kcc...not found Checking for program /home/d3m956/.local/bin/kcc...not found Checking for program /home/d3m956/bin/kcc...not found Checking for program /home/d3m956/kcc...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/kcc...not found Checking for program /usr/local/bin/xlc...not found Checking for program /usr/bin/xlc...not found Checking for program /usr/local/sbin/xlc...not found Checking for program /usr/sbin/xlc...not found Checking for program /usr/local/openmpi/bin/xlc...not found Checking for program /home/d3m956/.local/bin/xlc...not found Checking for program /home/d3m956/bin/xlc...not found Checking for program /home/d3m956/xlc...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/xlc...not found Checking for program /usr/local/bin/icc...not found Checking for program /usr/bin/icc...not found Checking for program /usr/local/sbin/icc...not found Checking for program /usr/sbin/icc...not found Checking for program /usr/local/openmpi/bin/icc...not found Checking for program /home/d3m956/.local/bin/icc...not found Checking for program /home/d3m956/bin/icc...not found Checking for program /home/d3m956/icc...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/icc...not found Checking for program /usr/local/bin/ecc...not found Checking for program /usr/bin/ecc...not found Checking for program /usr/local/sbin/ecc...not found Checking for program /usr/sbin/ecc...not found Checking for program /usr/local/openmpi/bin/ecc...not found Checking for program /home/d3m956/.local/bin/ecc...not found Checking for program /home/d3m956/bin/ecc...not found Checking for program /home/d3m956/ecc...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/ecc...not found Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /usr/local/sbin/win32fe...not found Checking for program /usr/sbin/win32fe...not found Checking for program /usr/local/openmpi/bin/win32fe...not found Checking for program /home/d3m956/.local/bin/win32fe...not found Checking for program /home/d3m956/bin/win32fe...not found Checking for program /home/d3m956/win32fe...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/win32fe...not found Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /usr/local/sbin/win32fe...not found Checking for program /usr/sbin/win32fe...not found Checking for program /usr/local/openmpi/bin/win32fe...not found Checking for program /home/d3m956/.local/bin/win32fe...not found Checking for program /home/d3m956/bin/win32fe...not found Checking for program /home/d3m956/win32fe...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/win32fe...not found Checking for program /usr/local/bin/pgcc...not found Checking for program /usr/bin/pgcc...not found Checking for program /usr/local/sbin/pgcc...not found Checking for program /usr/sbin/pgcc...not found Checking for program /usr/local/openmpi/bin/pgcc...not found Checking for program /home/d3m956/.local/bin/pgcc...not found Checking for program /home/d3m956/bin/pgcc...not found Checking for program /home/d3m956/pgcc...not found Checking for program /home/d3m956/petsc-std/bin/win32fe/pgcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C Executing: gcc -c -o /tmp/petsc-ZabDcK/config.setCompilers/conftest.o -I/tmp/petsc-ZabDcK/config.setCompilers -03 /tmp/petsc-ZabDcK/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: gcc: error: unrecognized command line option ‘-03’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with gcc. Deleting "CC" Checking for program /usr/local/bin/cc...not found Checking for program /usr/bin/cc...found Defined make macro "CC" to "cc" Pushing language C Executing: cc -c -o /tmp/petsc-ZabDcK/config.setCompilers/conftest.o -I/tmp/petsc-ZabDcK/config.setCompilers -03 /tmp/petsc-ZabDcK/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: cc: error: unrecognized command line option ‘-03’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with cc. Deleting "CC" ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Could not locate a functional C compiler ******************************************************************************* File "/home/d3m956/petsc-std/config/configure.py", line 272, in petsc_configure framework.configure(out = sys.stdout) File "/home/d3m956/petsc-std/config/BuildSystem/config/framework.py", line 941, in configure child.configure() File "/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py", line 1562, in configure self.executeTest(self.checkCCompiler) File "/home/d3m956/petsc-std/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/home/d3m956/petsc-std/config/BuildSystem/config/setCompilers.py", line 553, in checkCCompiler raise RuntimeError('Could not locate a functional C compiler') ================================================================================ Finishing Configure Run at Fri Apr 24 11:25:48 2015 ================================================================================