Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Wed Mar 11 22:46:45 2015 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc=cc --with-clib-autodetect=0 --with-cxx=CC LIBS=-lstdc++ --prefix=/autofs/na3_home1/adams/petsc_public_opt64idx_gnu --with-cxxlib-autodetect=0 --with-fc=ftn --with-fortranlib-autodetect=0 --with-shared-libraries=0 --known-mpi-shared-libraries=1 --with-x=0 --with-64-bit-indices --with-debugging=0 PETSC_ARCH=arch-titan-opt64idx-gnu PETSC_DIR=/lustre/atlas/scratch/adams/env003/petsc_maint Working directory: /lustre/atlas2/env003/scratch/adams/petsc_maint Machine platform: ('Linux', 'titan-batch5', '3.0.101-0.31.1_1.0502.8394-cray_gem_s', '#1 SMP Wed Sep 10 03:56:55 UTC 2014', 'x86_64', 'x86_64') Python version: 2.7.3 (default, May 22 2013, 15:20:29) [GCC 4.3.4 [gcc-4_3-branch revision 152973]] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/framework.py:829) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:829) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/gdb...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/gdb...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/gdb...not found Checking for program /opt/cray/netcdf/4.3.2/bin/gdb...not found Checking for program /opt/cray/atp/1.7.5/bin/gdb...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/gdb...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/gdb...not found Checking for program /opt/gcc/4.8.2/bin/gdb...not found Checking for program /opt/cray/craype/2.2.1/bin/gdb...not found Checking for program /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin/gdb...not found Checking for program /ccs/home/adams/git-fat/gdb...not found Checking for program /opt/cray/llm/default/bin/gdb...not found Checking for program /opt/cray/llm/default/etc/gdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/gdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/gdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin/gdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin/gdb...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/gdb...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/gdb...not found Checking for program /ccs/home/adams/git-fat/gdb...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/gdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/gdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/gdb...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/gdb...not found Checking for program /sw/xk6/altd/bin/gdb...not found Checking for program /sw/xk6/site-aprun/bin/gdb...not found Checking for program /sw/xk6/bin/gdb...not found Checking for program /sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin/gdb...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/gdb...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/gdb...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/gdb...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/gdb...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/gdb...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/gdb...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/gdb...not found Checking for program /opt/modules/3.2.6.7/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/dbx...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/dbx...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/dbx...not found Checking for program /opt/cray/netcdf/4.3.2/bin/dbx...not found Checking for program /opt/cray/atp/1.7.5/bin/dbx...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/dbx...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/dbx...not found Checking for program /opt/gcc/4.8.2/bin/dbx...not found Checking for program /opt/cray/craype/2.2.1/bin/dbx...not found Checking for program /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin/dbx...not found Checking for program /ccs/home/adams/git-fat/dbx...not found Checking for program /opt/cray/llm/default/bin/dbx...not found Checking for program /opt/cray/llm/default/etc/dbx...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/dbx...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/dbx...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin/dbx...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin/dbx...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/dbx...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/dbx...not found Checking for program /ccs/home/adams/git-fat/dbx...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/dbx...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/dbx...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/dbx...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/dbx...not found Checking for program /sw/xk6/altd/bin/dbx...not found Checking for program /sw/xk6/site-aprun/bin/dbx...not found Checking for program /sw/xk6/bin/dbx...not found Checking for program /sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin/dbx...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/dbx...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/dbx...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/dbx...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/dbx...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/dbx...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/dbx...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/dbx...not found Checking for program /opt/modules/3.2.6.7/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/X11/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /opt/bin/dbx...not found Checking for program /usr/lib/mit/bin/dbx...not found Checking for program /usr/lib/mit/sbin/dbx...not found Checking for program /usr/lib/qt3/bin/dbx...not found Checking for program /opt/cray/bin/dbx...not found Checking for program /opt/public/bin/dbx...not found Checking for program /opt/bin/dbx...not found Checking for program /opt/public/bin/dbx...not found Checking for program /ccs/home/adams/dbx...not found Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/xdb...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/xdb...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/xdb...not found Checking for program /opt/cray/netcdf/4.3.2/bin/xdb...not found Checking for program /opt/cray/atp/1.7.5/bin/xdb...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/xdb...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/xdb...not found Checking for program /opt/gcc/4.8.2/bin/xdb...not found Checking for program /opt/cray/craype/2.2.1/bin/xdb...not found Checking for program /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin/xdb...not found Checking for program /ccs/home/adams/git-fat/xdb...not found Checking for program /opt/cray/llm/default/bin/xdb...not found Checking for program /opt/cray/llm/default/etc/xdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/xdb...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/xdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin/xdb...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin/xdb...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/xdb...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/xdb...not found Checking for program /ccs/home/adams/git-fat/xdb...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/xdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/xdb...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/xdb...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/xdb...not found Checking for program /sw/xk6/altd/bin/xdb...not found Checking for program /sw/xk6/site-aprun/bin/xdb...not found Checking for program /sw/xk6/bin/xdb...not found Checking for program /sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin/xdb...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/xdb...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/xdb...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/xdb...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/xdb...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/xdb...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/xdb...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/xdb...not found Checking for program /opt/modules/3.2.6.7/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/X11/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /opt/bin/xdb...not found Checking for program /usr/lib/mit/bin/xdb...not found Checking for program /usr/lib/mit/sbin/xdb...not found Checking for program /usr/lib/qt3/bin/xdb...not found Checking for program /opt/cray/bin/xdb...not found Checking for program /opt/public/bin/xdb...not found Checking for program /opt/bin/xdb...not found Checking for program /opt/public/bin/xdb...not found Checking for program /ccs/home/adams/xdb...not found Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/dsymutil...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/dsymutil...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/dsymutil...not found Checking for program /opt/cray/netcdf/4.3.2/bin/dsymutil...not found Checking for program /opt/cray/atp/1.7.5/bin/dsymutil...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/dsymutil...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/dsymutil...not found Checking for program /opt/gcc/4.8.2/bin/dsymutil...not found Checking for program /opt/cray/craype/2.2.1/bin/dsymutil...not found Checking for program /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin/dsymutil...not found Checking for program /ccs/home/adams/git-fat/dsymutil...not found Checking for program /opt/cray/llm/default/bin/dsymutil...not found Checking for program /opt/cray/llm/default/etc/dsymutil...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/dsymutil...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/dsymutil...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin/dsymutil...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin/dsymutil...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/dsymutil...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/dsymutil...not found Checking for program /ccs/home/adams/git-fat/dsymutil...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/dsymutil...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/dsymutil...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/dsymutil...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/dsymutil...not found Checking for program /sw/xk6/altd/bin/dsymutil...not found Checking for program /sw/xk6/site-aprun/bin/dsymutil...not found Checking for program /sw/xk6/bin/dsymutil...not found Checking for program /sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin/dsymutil...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/dsymutil...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/dsymutil...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/dsymutil...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/dsymutil...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/dsymutil...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/dsymutil...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/dsymutil...not found Checking for program /opt/modules/3.2.6.7/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/X11/dsymutil...not found Checking for program /usr/X11R6/bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /opt/bin/dsymutil...not found Checking for program /usr/lib/mit/bin/dsymutil...not found Checking for program /usr/lib/mit/sbin/dsymutil...not found Checking for program /usr/lib/qt3/bin/dsymutil...not found Checking for program /opt/cray/bin/dsymutil...not found Checking for program /opt/public/bin/dsymutil...not found Checking for program /opt/bin/dsymutil...not found Checking for program /opt/public/bin/dsymutil...not found Checking for program /ccs/home/adams/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/git...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/git...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/git...not found Checking for program /opt/cray/netcdf/4.3.2/bin/git...not found Checking for program /opt/cray/atp/1.7.5/bin/git...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/git...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/git...not found Checking for program /opt/gcc/4.8.2/bin/git...not found Checking for program /opt/cray/craype/2.2.1/bin/git...not found Checking for program /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin/git...not found Checking for program /ccs/home/adams/git-fat/git...not found Checking for program /opt/cray/llm/default/bin/git...not found Checking for program /opt/cray/llm/default/etc/git...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/git...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/git...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin/git...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin/git...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/git...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/git...not found Checking for program /ccs/home/adams/git-fat/git...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.3.2 ================================================================================ TEST configureMercurial from config.sourceControl(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/hg...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/hg...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/hg...not found Checking for program /opt/cray/netcdf/4.3.2/bin/hg...not found Checking for program /opt/cray/atp/1.7.5/bin/hg...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/hg...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/hg...not found Checking for program /opt/gcc/4.8.2/bin/hg...not found Checking for program /opt/cray/craype/2.2.1/bin/hg...not found Checking for program /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin/hg...not found Checking for program /ccs/home/adams/git-fat/hg...not found Checking for program /opt/cray/llm/default/bin/hg...not found Checking for program /opt/cray/llm/default/etc/hg...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/hg...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/hg...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin/hg...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin/hg...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/hg...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/hg...not found Checking for program /ccs/home/adams/git-fat/hg...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/hg...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/hg...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/hg...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/hg...not found Checking for program /sw/xk6/altd/bin/hg...not found Checking for program /sw/xk6/site-aprun/bin/hg...not found Checking for program /sw/xk6/bin/hg...not found Checking for program /sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin/hg...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/hg...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/hg...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/hg...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/hg...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/hg...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/hg...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/hg...not found Checking for program /opt/modules/3.2.6.7/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/X11/hg...not found Checking for program /usr/X11R6/bin/hg...not found Checking for program /usr/games/hg...not found Checking for program /opt/bin/hg...not found Checking for program /usr/lib/mit/bin/hg...not found Checking for program /usr/lib/mit/sbin/hg...not found Checking for program /usr/lib/qt3/bin/hg...not found Checking for program /opt/cray/bin/hg...not found Checking for program /opt/public/bin/hg...not found Checking for program /opt/bin/hg...not found Checking for program /opt/public/bin/hg...not found Checking for program /ccs/home/adams/hg...not found ================================================================================ TEST configureCVS from config.sourceControl(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/cvs...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/cvs...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/cvs...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cvs...not found Checking for program /opt/cray/atp/1.7.5/bin/cvs...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/cvs...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/cvs...not found Checking for program /opt/gcc/4.8.2/bin/cvs...not found Checking for program /opt/cray/craype/2.2.1/bin/cvs...not found Checking for program /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin/cvs...not found Checking for program /ccs/home/adams/git-fat/cvs...not found Checking for program /opt/cray/llm/default/bin/cvs...not found Checking for program /opt/cray/llm/default/etc/cvs...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/cvs...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/cvs...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin/cvs...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin/cvs...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/cvs...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/cvs...not found Checking for program /ccs/home/adams/git-fat/cvs...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/cvs...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/cvs...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/cvs...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/cvs...not found Checking for program /sw/xk6/altd/bin/cvs...not found Checking for program /sw/xk6/site-aprun/bin/cvs...not found Checking for program /sw/xk6/bin/cvs...not found Checking for program /sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin/cvs...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/cvs...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/cvs...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/cvs...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/cvs...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/cvs...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/cvs...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/cvs...not found Checking for program /opt/modules/3.2.6.7/bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" Executing: cvs --version stdout: Concurrent Versions System (CVS) 1.12.12 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/svn...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/svn...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/svn...not found Checking for program /opt/cray/netcdf/4.3.2/bin/svn...not found Checking for program /opt/cray/atp/1.7.5/bin/svn...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/svn...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/svn...not found Checking for program /opt/gcc/4.8.2/bin/svn...not found Checking for program /opt/cray/craype/2.2.1/bin/svn...not found Checking for program /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin/svn...not found Checking for program /ccs/home/adams/git-fat/svn...not found Checking for program /opt/cray/llm/default/bin/svn...not found Checking for program /opt/cray/llm/default/etc/svn...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin/svn...not found Checking for program /opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin/svn...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin/svn...not found Checking for program /opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin/svn...not found Checking for program /opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin/svn...not found Checking for program /opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin/svn...not found Checking for program /ccs/home/adams/git-fat/svn...not found Checking for program /sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin/svn...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin/svn...not found Checking for program /opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp/svn...not found Checking for program /sw/xk6/ddt/4.2-35818/sles11.1_binary/bin/svn...not found Checking for program /sw/xk6/altd/bin/svn...not found Checking for program /sw/xk6/site-aprun/bin/svn...not found Checking for program /sw/xk6/bin/svn...not found Checking for program /sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin/svn...not found Checking for program /opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin/svn...not found Checking for program /opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin/svn...not found Checking for program /opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin/svn...not found Checking for program /opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin/svn...not found Checking for program /opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin/svn...not found Checking for program /opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin/svn...not found Checking for program /opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin/svn...not found Checking for program /opt/modules/3.2.6.7/bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.6.17 ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 5 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/lustre/atlas/scratch/adams/env003/petsc_maint" ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) bin/maint exists. This appears to be a repository clone Defined "VERSION_GIT" to ""v3.5.3-37-g7bcbaff"" Defined "VERSION_DATE_GIT" to ""2015-02-27 12:25:16 -0600"" Defined "VERSION_BRANCH_GIT" to ""maint"" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set =============================================================================== Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-titan-opt64idx-gnu, ignoring environment: arch-titan-dbg-pgi =============================================================================== Defined "ARCH" to ""arch-titan-opt64idx-gnu"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /lustre/atlas2/env003/scratch/adams/petsc_maint/arch-titan-opt64idx-gnu/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1527) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1527) **** printenv **** = PE_LIBSCI_GENCOMPS_CRAY_interlagos=83 PBS_O_LANG=en_US.UTF-8 CRAY_LIBSCI_BASE_DIR=/opt/cray/libsci/13.0.1 CPU=x86_64 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/petsc/3.5.1.0/real/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig INFOPATH=/opt/gcc/4.8.2/snos/share/info:/opt/acml/5.3.1/Doc:/usr/local/info:/usr/share/info:/usr/info ALTD_ON=1 XTPE_LINK_TYPE=dynamic CRAY_SHMEM_VER=7.0.4 ATP_HOME=/opt/cray/atp/1.7.5 JAVA_HOME=/usr/lib64/jvm/java PE_ACML_DEFAULT_TARGET_x86_64= APRUN_USAGE_PATH=/sw/xk6/aprun-usage PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/13.0.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig CRAY_PARALLEL_NETCDF_DIR=/opt/cray/parallel-netcdf/1.5.0 PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5/1.8.13/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/trilinos/11.10.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_GENCOMPS_GNU_interlagos=49 48 PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35=nv35 PE_TPSL_DEFAULT_GENCOMPS_PGI_x86_64=141 PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_SMA_DIR_CRAY_DEFAULT64=64 CSHEDIT=emacs BOOST_FLAGS=-I/sw/xk6/boost/1.54.0/cle5.2_gnu4.8.2/include -L/sw/xk6/boost/1.54.0/cle5.2_gnu4.8.2/lib LESSOPEN=lessopen.sh %s PE_LIBSCI_GENCOMPS_INTEL_interlagos=140 CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/include USER=adams PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=140 JDK_HOME=/usr/lib64/jvm/java PE_HDF5_DEFAULT_GENCOMPS_GNU=49 48 CRAY_LIBSCI_DIR=/opt/cray/libsci/13.0.1 CRAY_NETCDF_HDF5PARALLEL_VERSION=4.3.2 JAVA_BINDIR=/usr/lib64/jvm/java/bin PE_LIBSCI_DEFAULT_OMP_REQUIRES= PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf/4.3.2/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig QT_HOME_DIR=/usr/share/desktop-data PE_ACML_DEFAULT_DIR_OPENMP=_mp PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL TMPDIR=/tmp/scratch PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI PBS_GPUFILE=/var/spool/torque/aux//2276234gpu PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/ga/5.1.0.5/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig PE_LIBSCI_GENCOMPS_PGI_x86_64=141 PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=49 48 MODULE_VERSION=3.2.6.7 LIBSCI_VERSION=13.0.1 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/include PE_MPICH_DEFAULT_GENCOMPS_GNU=49 48 PE_ACML_TARGET_interlagos=_fma4 CRAY_SHMEM_BASEDIR=/opt/cray/mpt/7.0.4/gni PE_ACML_DIR_INTEL=ifort64 PE_LIBSCI_GENCOMPS_INTEL_x86_64=140 PE_GA_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_FORTRAN_PKGCONFIG_LIBS=netcdff_parallel:mpichf90 PE_MPICH_GENCOMPS_PGI=141 PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda BOOST_CLIB=-I/sw/xk6/boost/1.54.0/cle5.2_gnu4.8.2/include -L/sw/xk6/boost/1.54.0/cle5.2_gnu4.8.2/lib -lboost_date_time -lboost_filesystem -lboost_graph -lboost_graph_parallel -lboost_iostreams -lboost_math_c99 -lboost_math_c99f -lboost_math_c99l -lboost_math_tr1 -lboost_math_tr1f -lboost_math_tr1l -lboost_mpi -lboost_prg_exec_monitor -lboost_program_options -lboost_python -lboost_regex -lboost_serialization -lboost_signals -lboost_system -lboost_test_exec_monitor -lboost_thread -lboost_unit_test_framework -lboost_wave -lboost_wserialization PE_ACML_DEFAULT_TARGET_interlagos=_fma4 CRAY_CUDATOOLKIT_VERSION=5.5.51-1.0502.9594.3.1 NNTPSERVER=news CUDATOOLKIT_HOME=/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1 HOST=titan-batch5 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf/4.3.2/PGI/141/lib/pkgconfig:/opt/cray/ga/5.1.0.5/PGI/141/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/PGI/141/lib/pkgconfig:/opt/cray/hdf5/1.8.13/PGI/141/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/PGI/141/lib/pkgconfig PE_MPICH_MODULE_NAME=cray-mpich CRAY_LIBSCI_VERSION=13.0.1 PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV=CRAY GNU DDTMPIRUN=/opt/cray/alps/default/bin/aprun PBS_MICFILE=/var/spool/torque/aux//2276234mic PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/fftw/3.3.4.0/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=140 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.5.0/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig JRE_HOME=/usr/lib64/jvm/java/jre PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/1.4.2/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig PBS_O_HOME=/ccs/home/adams PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=49 48 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI WORLDWORK=/lustre/atlas/world-shared PBS_ENVIRONMENT=PBS_INTERACTIVE PE_LIBSCI_GENCOMPS_PGI_interlagos=141 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@ LIBSCI_BASE_DIR=/opt/cray/libsci/13.0.1 PE_LIBSCI_GENCOMPS_INTEL_haswell=140 MODULE_VERSION_STACK=3.2.6.7 PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL PE_LIBSCI_GENCOMPS_CRAY_haswell=83 LC_ALL=POSIX PE_MPICH_DIR_PGI_DEFAULT64=64 PE_GA_DEFAULT_VOLATILE_PRGENV=GNU LOADEDMODULES=modules/3.2.6.7:eswrap/1.1.0-1.020200.1231.0:craype-network-gemini:craype/2.2.1:udreg/2.3.2-1.0502.9275.1.25.gem:ugni/5.0-1.0502.9685.4.24.gem:dmapp/7.0.1-1.0502.9501.5.211.gem:gni-headers/3.0-1.0502.9684.5.2.gem:xpmem/0.1-2.0502.55507.3.2.gem:dvs/2.5_0.9.0-1.0502.1873.1.142.gem:rca/1.0.0-2.0502.53711.3.125.gem:cray-mpich/7.0.4:craype-interlagos:lustredu/1.4:DefApps:site-aprun/1.0:aprun-usage/1.0:altd/1.0:acml/5.3.1:ddt/4.2-35818:cudatoolkit/5.5.51-1.0502.9594.3.1:git/2.3.2:nodestat/2.2-1.0502.53712.3.109.gem:sdb/1.0-1.0502.55976.5.27.gem:alps/5.2.1-2.0502.9072.13.1.gem:lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50:hss-llm/7.2.0:Base-opts/1.0.2-1.0502.53325.1.2.gem:cmake/2.8.11.2:gcc/4.8.2:cray-libsci/13.0.1:pmi/5.0.5-1.0000.10300.134.8.gem:atp/1.7.5:PrgEnv-gnu/5.2.40:cray-shmem/7.0.4:cray-netcdf-hdf5parallel/4.3.2:cray-parallel-netcdf/1.5.0:python/2.7.3:boost/1.54.0 PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=140 PE_MPICH_DEFAULT_DIR_PGI_DEFAULT64=64 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ CRAY_LD_LIBRARY_PATH=/opt/cray/parallel-netcdf/1.5.0/GNU/48/lib:/opt/cray/netcdf-hdf5parallel/4.3.2/GNU/48/lib:/opt/cray/mpt/7.0.4/gni/sma/lib64:/opt/cray/mpt/7.0.4/gni/sma64/lib64:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64:/opt/cray/libsci/13.0.1/GNU/48/interlagos/lib:/opt/cray/mpt/7.0.4/gni/mpich2-gnu/48/lib:/opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/lib64:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64:/opt/cray/mpt/7.0.4/gni/mpich2-pgi/141/lib:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64:/opt/cray/libsci/13.0.1/PGI/141/x86_64/lib PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PE_ACML_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DEFAULT_DIR@@PE_ACML_DEFAULT_TARGET@@PE_ACML_DEFAULT_DIR_OPENMP@@PE_ACML_DEFAULT_DIR_DEFAULT64@/lib/pkgconfig PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI PE_MPICH_DEFAULT_GENCOMPS_PGI=141 LESS=-M -I PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64=83 CRAYPE_NETWORK_TARGET=gemini USERMODULES=/opt/modules/3.2.6.7/init/.usermodules:acml:alps:apprentice2:atp:blcr:cce:chapel:cray-fftw:cray-libsci:cray-mpich2:craypat:craype:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:mrnet:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:petsc:petsc-complex:pgi:pmi:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview GCC_PATH=/opt/gcc/4.8.2 XKEYSYMDB=/usr/share/X11/XKeysymDB PE_PARALLEL_NETCDF_VOLATILE_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.5.0/@PRGENV@/@PE_PARALLEL_NETCDF_GENCOMPS@/lib/pkgconfig CRAY_CPU_TARGET=interlagos PE_PKGCONFIG_PRODUCTS=PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_SMA:PE_LIBSCI:PE_MPICH:PE_ACML PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_LIBSCI_MODULE_NAME=cray-libsci/13.0.1 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_ACML_TARGET_x86_64= PELOCAL_PRGENV=true PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=140 TARGETMODULES=/opt/modules/3.2.6.7/init/.targetmodules:craype-abudhabi:craype-abudhabi-cu:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-knc:craype-mc12:craype-mc8:craype-network-aries:craype-network-gemini:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-target-petest:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon PE_ACML_DIR_DEFAULT64=_int64 SITE_APRUN_DIR=/sw/xk6/site-aprun CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64 LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32: CRAYOS_VERSION=5.2.40 PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=49 48 JAVA_ROOT=/usr/lib64/jvm/java PBS_O_LOGNAME=adams ESWRAP_LOGIN=titan-login1 ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/atp/1.7.5/lib/ PE_NETCDF_HDF5PARALLEL_VOLATILE_PRGENV=GNU SHLVL=1 PE_MPICH_DEFAULT_GENCOMPS_CRAY=83 PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@ CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64 PETSC_DIR=/autofs/na3_home1/adams/petsc PBS_O_PATH=/ccs/home/adams/git-fat/:/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin:/opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2-35818/sles11.1_binary/bin:/opt/cray/netcdf/4.3.2/bin:/sw/xk6/cmake/2.8.10.2/cle4.0_gnu4.7.2/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/pgi/14.2.0/linux86-64/14.2/bin:/opt/cray/craype/2.2.1/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/bin:/opt/public/bin CVSROOT=:ext:madams@anag.lbl.gov:/usr/local/cvsroot PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_TPSL XTPE_NETWORK_TARGET=gemini ENV=/etc/bash.bashrc PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=140 LS_OPTIONS=-N --color=none -T 0 MODULEPATH=/opt/cray/gem/modulefiles:/opt/cray/craype/default/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/sw/xk6/modulefiles PERL5LIB=/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/lib64/perl5/site_perl ALT_LINKER=/sw/xk6/altd/bin/ld SYSTEM_USERDIR=/tmp/work/adams CRAY_SHMEM_ROOTDIR=/opt/cray/mpt/7.0.4 BOOST_INC=-I/sw/xk6/boost/1.54.0/cle5.2_gnu4.8.2/include PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_haswell=140 OPENSSL_NO_DEFAULT_ZLIB=yes PE_FFTW_DEFAULT_TARGET_interlagos=interlagos PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5-parallel/1.8.13/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/include PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=83 LANG=en_US.UTF-8 ALTD_PATH=/sw/xk6/altd PBS_O_WORKDIR=/autofs/na3_home1/adams _LMFILES_000=/opt/modulefiles/modules/3.2.6.7:/opt/modulefiles/eswrap/1.1.0-1.020200.1231.0:/opt/cray/craype/default/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.2.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.9275.1.25.gem:/opt/cray/gem/modulefiles/ugni/5.0-1.0502.9685.4.24.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.9501.5.211.gem:/opt/cray/gem/modulefiles/gni-headers/3.0-1.0502.9684.5.2.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.55507.3.2.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.1873.1.142.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.53711.3.125.gem:/opt/cray/modulefiles/cray-mpich/7.0.4:/opt/cray/craype/default/modulefiles/craype-interlagos:/sw/xk6/modulefiles/lustredu/1.4:/sw/xk6/modulefiles/DefApps:/sw/xk6/modulefiles/site-aprun/1.0:/sw/xk6/modulefiles/aprun-usage/1.0:/sw/xk6/modulefiles/altd/1.0:/opt/modulefiles/acml/5.3.1:/sw/xk6/modulefiles/ddt/4.2-35818:/opt/cray/modulefiles/cudatoolkit/5.5.51-1.0502.9594.3.1:/sw/xk6/modulefiles/git/2.3.2:/opt/cra _LMFILES_001=y/gem/modulefiles/nodestat/2.2-1.0502.53712.3.109.gem:/opt/cray/gem/modulefiles/sdb/1.0-1.0502.55976.5.27.gem:/opt/cray/gem/modulefiles/alps/5.2.1-2.0502.9072.13.1.gem:/opt/cray/gem/modulefiles/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50:/opt/modulefiles/hss-llm/7.2.0:/opt/modulefiles/Base-opts/1.0.2-1.0502.53325.1.2.gem:/sw/xk6/modulefiles/cmake/2.8.11.2:/opt/modulefiles/gcc/4.8.2:/opt/cray/modulefiles/cray-libsci/13.0.1:/opt/cray/gem/modulefiles/pmi/5.0.5-1.0000.10300.134.8.gem:/opt/cray/modulefiles/atp/1.7.5:/opt/cray/modulefiles/PrgEnv-gnu/5.2.40:/opt/cray/modulefiles/cray-shmem/7.0.4:/opt/cray/modulefiles/cray-netcdf-hdf5parallel/4.3.2:/opt/cray/modulefiles/cray-parallel-netcdf/1.5.0:/sw/xk6/modulefiles/python/2.7.3:/sw/xk6/modulefiles/boost/1.54.0 PE_ACML_DEFAULT_DIR_CRAY=gfortran64 DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/include PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_LIBSCI_DEFAULT_GENCOMPS_PGI_interlagos=141 CRAYPE_LINK_TYPE=dynamic PKG_CONFIG_PATH_DEFAULT=/opt/cray/papi/5.3.1/lib64/pkgconfig PE_SMA_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/sma@PE_SMA_DIR_DEFAULT64@/lib64/pkgconfig PBS_TASKNUM=1 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PBS_NUM_NODES=1 PE_CXX_PKGCONFIG_LIBS=netcdf_c++4_parallel:mpichcxx SSH_TTY=/dev/pts/12 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=49 48 PE_NETCDF_FORTRAN_PKGCONFIG_LIBS=netcdff_parallel PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_LIBSCI_OMP_REQUIRES_openmp=_mp ACML_BASE_DIR=/opt/acml/5.3.1 CH_TIMER=TRUE PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=49 48 SSH_CLIENT=128.55.72.22 39592 22 LOGNAME=adams PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig PATH=/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin:/opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin:/opt/cray/parallel-netcdf/1.5.0/bin:/opt/cray/netcdf/4.3.2/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin:/opt/cray/mpt/7.0.4/gni/bin:/opt/gcc/4.8.2/bin:/opt/cray/craype/2.2.1/bin:/sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin:/ccs/home/adams/git-fat/:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/sbin:/opt/cray/lustre-cray_gem_s/2.6.93_3.0.101_0.31.1_1.0502.8394.10.1-1.0502.17198.8.50/bin:/opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/sbin:/opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/bin:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.53712.3.109.gem/bin:/ccs/home/adams/git-fat/:/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/bin:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/libnvvp:/sw/xk6/ddt/4.2-35818/sles11.1_binary/bin:/sw/xk6/altd/bin:/sw/xk6/site-aprun/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.4/sles11.1_gnu4.8.2/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.142.gem/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1231.0/bin:/opt/modules/3.2.6.7/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/opt/public/bin:/opt/bin:/opt/public/bin PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PBS_VERSION=TORQUE-4.2.6 PE_ACML_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DIR@@PE_ACML_TARGET@@PE_ACML_DIR_OPENMP@@PE_ACML_DIR_DEFAULT64@/lib/pkgconfig HOME=/ccs/home/adams CRAY_PRE_COMPILE_OPTS=-hnetwork=gemini INFODIR=/usr/local/info:/usr/share/info:/usr/info MAP_LICENSE_FILE=/sw/sources/ddt/Licence.map MPICH_DIR=/opt/cray/mpt/7.0.4/gni/mpich2-gnu/48 PBS_O_SERVER=moab1.ccs.ornl.gov GITDIR=/sw/xk6/git/2.3.2/sles11.3_gnu4.3.4 CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64 PE_LIBSCI_OMP_REQUIRES= PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-intel/140/lib/pkgconfig:/opt/cray/netcdf/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/ga/5.1.0.5/INTEL/140/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/INTEL/140/lib/pkgconfig:/opt/cray/hdf5/1.8.13/INTEL/140/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/INTEL/140/lib/pkgconfig PE_MPICH_FIXED_PRGENV=INTEL PE_ACML_DEFAULT_DIR_INTEL=ifort64 PKGCONFIG_ENABLED=1 ALTD_SELECT_OFF_USERS= PROJWORK=/lustre/atlas/proj-shared PE_LIBSCI_GENCOMPS_GNU_x86_64=49 48 SHMEM_ABORT_ON_ERROR=1 XAUTHLOCALHOSTNAME=titan-ext4 PE_PKGCONFIG_LIBS=pnetcdf:netcdf_parallel:sma:AtpSigHandler:libsci_mpi:libsci:mpich:cray-cudatoolkit:acml:cray-rca PBS_NODENUM=0 PE_LIBSCI_GENCOMPS_INTEL_sandybridge=140 PE_PAPI_DEFAULT_ACCEL_LIBS= CH_OUTPUT_INTERVAL=100000 XCURSOR_THEME=DMZ CRAYPE_DIR=/opt/cray/craype/2.2.1 XDG_DATA_DIRS=/usr/local/share:/usr/share:/etc/opt/kde3/share:/opt/cray/share:/opt/kde3/share:/opt/public/share:/usr/share/gnome/help PE_MPICH_TARGET_VAR_nvidia35=-lcudart CRAY_MPICH2_BASEDIR=/opt/cray/mpt/7.0.4/gni CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/include MANPATH=/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/share/man:/opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/share/man:/opt/cray/parallel-netcdf/1.5.0/man PROFILEREAD=true PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci_acc/3.0.2/@PRGENV@/@PE_LIBSCI_ACC_DEFAULT_GENCOMPS@/@PE_LIBSCI_ACC_DEFAULT_TARGET@/lib/pkgconfig ALTD_SELECT_USERS= PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_MPICH PBS_NODEFILE=/var/spool/torque/aux//2276234 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 HOSTNAME=titan-ext4 PETSC_ARCH=arch-titan-dbg-pgi PBS_VNODENUM=0 PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=140 MACHTYPE=x86_64-suse-linux GROUP=adams CRAY_PARALLEL_NETCDF_VERSION=1.5.0 MINICOM=-c on CVS_RSH=ssh PE_LIBSCI_GENCOMPS_CRAY_sandybridge=83 PE_PETSC_DEFAULT_GENCOMPS_PGI_x86_64=141 DVS_VERSION=0.9.0 LIBRARYMODULES=/opt/modules/3.2.6.7/init/.librarymodules:acml:alps:apprentice2:atp:cray-fftw:cray-libsci:cray-mpich2:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:lgdb:libfast:libsci_acc:mpich1:mpich2:mrnet:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:petsc:petsc-complex:pmi:shmem:tpsl:trilinos:xt-atp:xt-lgdb:xt-libsci:xt-mpt:xt-papi PE_LIBSCI_DEFAULT_GENCOMPS_GNU_interlagos=49 48 MODULESHOME=/opt/modules/3.2.6.7 ACML_VERSION=5.3.1 PBS_JOBCOOKIE=091D6A3F2119467C5111146A884AD563 PBS_O_HOST=titan-ext4.ccs.ornl.gov PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=83 GCC_VERSION=4.8.2 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=83 PE_MPICH_NV_LIBS_nvidia35=-lcudart PE_LIBSCI_GENCOMPS_CRAY_x86_64=83 PBS_NUM_PPN=16 PBS_O_SHELL=/bin/csh XDG_CONFIG_DIRS=/etc/xdg OMP_NUM_THREADS=16 PE_NETCDF_DEFAULT_GENCOMPS_GNU=49 48 PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20=nv20 PAGER=less PE_PARALLEL_NETCDF_GENCOMPS_GNU=49 48 PE_GA_DEFAULT_GENCOMPS_GNU=49 48 CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64 PE_ACML_DIR_PGI=pgi64 ATP_MRNET_COMM_PATH=/opt/cray/atp/1.7.5/bin/atp_mrnet_commnode_wrapper CRAY_MPICH2_VER=7.0.4 LD_LIBRARY_PATH=/sw/xk6/boost/1.54.0/cle5.2_gnu4.8.2/lib:/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/lib:/opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/lib:/opt/gcc/mpc/0.8.1/lib:/opt/gcc/mpfr/2.4.2/lib:/opt/gcc/gmp/4.3.2/lib:/opt/gcc/4.8.2/snos/lib64:/opt/sw/xk6/ddt/4.2-35818/sles11.1_binary/lib/32:/opt/sw/xk6/ddt/4.2-35818/sles11.1_binary/lib/64 G_BROKEN_FILENAMES=1 FFTW_SYSTEM_WISDOM_DIR=/opt/cray/libsci/13.0.1 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_sandybridge=83 PE_PARALLEL_NETCDF_DIR=/opt/cray/parallel-netcdf/1.5.0 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_sandybridge=140 PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos=140 G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-1,CP1252 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_haswell=83 PBS_JOBNAME=STDIN PE_LIBSCI_VOLATILE_PRGENV=CRAY GNU INTEL PGI LESSCLOSE=lessclose.sh %s %s PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.0.4/gni/mpich2-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/lib64 PE_LIBSCI_DEFAULT_GENCOMPS_PGI_x86_64=141 PBS_NP=16 CRAY_CUDATOOLKIT_INCLUDE_OPTS=-I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/Debugger/include PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=83 MORE=-sl PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp GNU_VERSION=4.8.2 HOSTTYPE=x86_64 CRAYPE_VERSION=2.2.1 CRAY_PRGENVGNU=loaded NETCDF_DIR=/opt/cray/netcdf-hdf5parallel/4.3.2/GNU/48 TERM=xterm PBS_MOMPORT=15003 MEMBERWORK=/lustre/atlas/scratch/adams PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI CRAY_MPICH2_DIR=/opt/cray/mpt/7.0.4/gni/mpich2-gnu/48 PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/netcdf/4.3.2/CRAY/83/lib/pkgconfig:/opt/cray/ga/5.1.0.5/CRAY/83/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/CRAY/83/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/CRAY/83/lib/pkgconfig:/opt/cray/hdf5/1.8.13/CRAY/83/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/CRAY/83/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 LESSKEY=/etc/lesskey.bin PYTHONSTARTUP=/etc/pythonstart PBS_O_QUEUE=batch PWD=/lustre/atlas/scratch/adams/env003/petsc_maint XTOS_VERSION=5.2.40 RCLOCAL_BASEOPTS=true PE_CRAY_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.5.0/CRAY/83/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/CRAY/83/lib/pkgconfig PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/13.0.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_ACML_DIR_GNU=gfortran64 PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge CRAY_NETCDF_DIR=/opt/cray/netcdf-hdf5parallel/4.3.2 SHELL=/bin/csh PE_MPICH_NV_LIBS= PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU CRAY_MPICH2_ROOTDIR=/opt/cray/mpt/7.0.4 PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI LESS_ADVANCED_PREPROCESSOR=no PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU PRGENVMODULES=/opt/modules/3.2.6.7/init/.prgenvmodules:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi PARALLEL_NETCDF_DIR=/opt/cray/parallel-netcdf/1.5.0/GNU/48 DMAPP_ABORT_ON_ERROR=1 VENDOR=suse PE_PARALLEL_NETCDF_MODULE_NAME=cray-parallel-netcdf PYTHONPATH=/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/lib/python2.7/site-packages:/opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/lib/python2.7/site-packages:/opt/cray/sdb/1.0-1.0502.55976.5.27.gem/lib64/py MPICH_ABORT_ON_ERROR=1 PE_ENV=GNU PE_PRODUCT_LIST=CRAY_PMI:CRAY_LIBSCI:CRAYPE:GNU:GCC:CRAY_LLM:CRAY_ALPS:ACML:CRAYPE_INTERLAGOS:CRAY_RCA:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_UGNI:CRAY_UDREG PE_MPICH_VOLATILE_PRGENV=CRAY GNU PGI PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=49 48 SDK_HOME=/usr/lib64/jvm/java PE_ACML_DEFAULT_DIR_GNU=gfortran64 PE_NETCDF_HDF5PARALLEL_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_MPICH PE_PARALLEL_NETCDF_VOLATILE_PRGENV=GNU PBS_QUEUE=batch PE_MPICH_GENCOMPS_CRAY=83 PBS_JOBID=2276234 CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64 -lrca PE_MPICH_TARGET_VAR_nvidia20=-lcudart MAIL=/var/mail/adams CSHRCREAD=true SSH_CONNECTION=128.55.72.22 39592 160.91.205.201 22 TOOLMODULES=/opt/modules/3.2.6.7/init/.toolmodules:apprentice:apprentice2:atp:chapel:craypat:ddt:gdb:iobuf:mrnet:papi:perftools:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview PE_MPICH_DIR_CRAY_DEFAULT64=64 PE_NETCDF_HDF5PARALLEL_FIXED_PRGENV=CRAY PGI INTEL ALTD_SELECT_ON=0 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_haswell=49 48 INPUTRC=/etc/inputrc QTDIR=/usr/lib/qt3 PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_@accelerator@ PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64=48 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=49 48 CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/include PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_MPICH:PE_FFTW:PE_TPSL:PE_LIBSCI:PE_NETCDF:PE_LIBSCI_ACC:PE_GA:PE_NETCDF_HDF5PARALLEL:PE_PARALLEL_NETCDF:PE_PETSC:PE_TRILINOS:PE_HDF5:PE_ACML:PE_HDF5_PARALLEL PE_PAPI_DEFAULT_TARGET_VAR_nvidia35=,-lcupti,-lcudart,-lcuda PE_NETCDF_CXX_PKGCONFIG_LIBS=netcdf_c++4_parallel PE_LIBSCI_GENCOMPS_GNU_sandybridge=49 48 PKG_CONFIG_PATH=/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/lib/pkgconfig:/opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/lib/pkgconfig:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/lib64/pkgconfig:/opt/cray/craype/2.2.1/pkg-config:/opt/cray/iobuf/2.0.5/lib/pkgconfig:/opt/cray/alps/5.2.1-2.0502.9072.13.1.gem/lib64/pkgconfig:/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64/pkgconfig:/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/lib64/pkgconfig:/opt/cray/xpmem/0.1-2.0502.55507.3.2.gem/lib64/pkgconfig:/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/lib64/pkgconfig:/opt/cray/ugni/5.0-1.0502.9685.4.24.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64/pkgconfig:/opt/cray/atp/1.7.5/lib/pkgconfig XNLSPATH=/usr/share/X11/nls PBS_O_MAIL=/var/mail/adams ALTD_VERBOSE=0 WINDOWMANAGER=/usr/bin/gnome CRAY_LLM_DIR=/opt/cray/llm/default PE_ACML_DIR_OPENMP=_mp PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=49 48 CRAY_CUDATOOLKIT_DIR=/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1 COLORTERM=1 CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.0.1-1.0502.9501.5.211.gem/include -I/opt/cray/gni-headers/3.0-1.0502.9684.5.2.gem/include PE_MPICH_NV_LIBS_nvidia20=-lcudart DISPLAY=localhost:50.0 PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_ACML_DEFAULT_DIR_DEFAULT64=_int64 PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.5.0/INTEL/140/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/mpt/7.0.4/gni/mpich2-intel/140/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=140 PBS_WALLTIME=1800 PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_interlagos=49 48 PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH OSTYPE=linux PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=49 48 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=140 PE_TPSL_DEFAULT_GENCOMPS_PGI_interlagos=141 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_SMA_MODULE_NAME=cray-shmem PE_MPICH_GENCOMPS_GNU=49 48 PE_NETCDF_MODULE_NAME=cray-netcdf-hdf5parallel CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/1.0.0-2.0502.53711.3.125.gem/include -I/opt/cray/krca/1.0.0-2.0502.53880.4.103.gem/include -I/opt/cray-hss-devel/7.2.0/include PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_interlagos=140 PE_NETCDF_HDF5PARALLEL_GENCOMPS_GNU=49 48 DDT_LICENSE_FILE=/sw/sources/ddt/Licence PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64=83 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/libsci/13.0.1/GNU/48/interlagos PE_PETSC_DEFAULT_GENCOMPS_PGI_interlagos=141 PE_PARALLEL_NETCDF_FIXED_PRGENV=CRAY PGI INTEL VT_FILTER_SPEC=./filter.spec PE_PGI_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.5.0/PGI/141/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/PGI/141/lib/pkgconfig TZ=US/Eastern PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY GNU PGI CRAY_SHMEM_DIR=/opt/cray/mpt/7.0.4/gni/sma PE_MPICH_MULTITHREADED_LIBS_multithreaded=_mt BOOST_LIB=-L/sw/xk6/boost/1.54.0/cle5.2_gnu4.8.2/lib PE_ACML_DEFAULT_DIR_PGI=pgi64 CRAY_CUDATOOLKIT_POST_LINK_OPTS=-L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/lib64 -L/opt/nvidia/cudatoolkit/5.5.51-1.0502.9594.3.1/extras/CUPTI/lib64 -Wl,--as-needed -Wl,-lcupti -Wl,-lcudart -Wl,--no-as-needed -L/opt/cray/nvidia/default/lib64 -lcuda CRAY_SITE_LIST_DIR=/etc/opt/cray/modules PE_ACML_DIR_CRAY=gfortran64 RCLOCAL_PRGENV=true APRUN_XFER_LIMITS=0 PE_SMA_DIR_PGI_DEFAULT64=64 PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=49 48 WORKDIR=/tmp/work/adams PE_NETCDF_HDF5PARALLEL_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_GENCOMPS@/lib/pkgconfig PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@ PE_LIBSCI_GENCOMPS_GNU_haswell=49 48 BOOST_DIR=/sw/xk6/boost/1.54.0/cle5.2_gnu4.8.2 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-1.0502.9275.1.25.gem/lib64 PE_NETCDF_PKGCONFIG_LIBS=netcdf_parallel DDT_HOME=/sw/xk6/ddt/4.2-35818/sles11.1_binary ================================================================================ TEST resetEnvCompilers from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1534) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1534) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1499) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1499) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:1518) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1518) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:398) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:398) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:408) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:408) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py:534) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:534) Locate a functional C compiler Checking for program /sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/cc...not found Checking for program /opt/sw/xk6/python/2.7.3/sles11.1_gnu4.3.4/bin/cc...not found Checking for program /opt/cray/parallel-netcdf/1.5.0/bin/cc...not found Checking for program /opt/cray/netcdf/4.3.2/bin/cc...not found Checking for program /opt/cray/atp/1.7.5/bin/cc...not found Checking for program /opt/cray/pmi/5.0.5-1.0000.10300.134.8.gem/bin/cc...not found Checking for program /opt/cray/mpt/7.0.4/gni/bin/cc...not found Checking for program /opt/gcc/4.8.2/bin/cc...not found Checking for program /opt/cray/craype/2.2.1/bin/cc...found Defined make macro "CC" to "cc" Pushing language C All intermediate test results are stored in /tmp/scratch/petsc-ddK6x4 All intermediate test results are stored in /tmp/scratch/petsc-ddK6x4/config.setCompilers Executing: cc -c -o /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ddK6x4/config.setCompilers /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ddK6x4/config.setCompilers /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.o -lstdc++ Executing: cc -c -o /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ddK6x4/config.setCompilers /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.o -lstdc++ -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: cc -c -o /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.o -I/tmp/scratch/petsc-ddK6x4/config.setCompilers /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: cc -o /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest.o -lstdc++ Executing: /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest Executing: /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest ERROR while running executable: Could not execute "/tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest": /tmp/scratch/petsc-ddK6x4/config.setCompilers/conftest: error while loading shared libraries: libacml.so: cannot open shared object file: No such file or directory Executing: cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default). --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. libs print library information. pkg_config_path print PKG_CONFIG_PATH used. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. Popping language C ******************************************************************************* UNABLE to EXECUTE BINARIES for ./configure ------------------------------------------------------------------------------- Cannot run executables created with C. If this machine uses a batch system to submit jobs you will need to configure using ./configure with the additional option --with-batch. Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers? ******************************************************************************* File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/configure.py", line 272, in petsc_configure framework.configure(out = sys.stdout) File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/framework.py", line 941, in configure child.configure() File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py", line 1562, in configure self.executeTest(self.checkCCompiler) File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py", line 542, in checkCCompiler self.checkCompiler('C') File "/lustre/atlas2/env003/scratch/adams/petsc_maint/config/BuildSystem/config/setCompilers.py", line 457, in checkCompiler raise OSError(msg) ================================================================================ Finishing Configure Run at Wed Mar 11 22:46:53 2015 ================================================================================