[0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing package: http://www.mcs.anl.gov/petsc/documentation/installation.html#external [0]PETSC ERROR: Unable to find requested PetscThreadComm type openmp [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2151-g30fc1d0 GIT Date: 2015-03-03 23:20:18 -0600 [0]PETSC ERROR: NIS2D on a petsc_dev named tesla02.ba.infn.it by ippolito Thu Mar 5 17:35:15 2015 [0]PETSC ERROR: Configure options --PETSC_ARCH=petsc_dev --PETSC_DIR=/opt/exp_soft/ippolito/petsc --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --with-debugging=0 --CFLAGS=-fopenmp --CXXFLAGS=-fopenmp --FFLAGS=-fopenmp COPTFLAGS="-O3 -march=native -mtune=native" CXXOPTFLAGS="-O3 -march=native -mtune=native" FOPTFLAGS="-O3 -march=native -mtune=native" --with-large-file-io=1 --with-openmp --with-pthreadclasses --with-threadcomm --download-cmake=yes --download-metis --download-parmetis --download-superlu_dist --download-mpich --download-fblaslapack -download-hypre -download-ml [0]PETSC ERROR: #1 PetscThreadCommSetType() line 506 in /opt/exp_soft/ippolito/petsc/src/sys/threadcomm/interface/threadcomm.c [0]PETSC ERROR: #2 PetscThreadCommWorldInitialize() line 1242 in /opt/exp_soft/ippolito/petsc/src/sys/threadcomm/interface/threadcomm.c [0]PETSC ERROR: #3 PetscGetThreadCommWorld() line 82 in /opt/exp_soft/ippolito/petsc/src/sys/threadcomm/interface/threadcomm.c [0]PETSC ERROR: #4 PetscCommGetThreadComm() line 117 in /opt/exp_soft/ippolito/petsc/src/sys/threadcomm/interface/threadcomm.c [0]PETSC ERROR: #5 PetscCommDuplicate() line 195 in /opt/exp_soft/ippolito/petsc/src/sys/objects/tagm.c [0]PETSC ERROR: #6 PetscHeaderCreate_Private() line 59 in /opt/exp_soft/ippolito/petsc/src/sys/objects/inherit.c [0]PETSC ERROR: #7 MatCreate() line 62 in /opt/exp_soft/ippolito/petsc/src/mat/utils/gcreate.c [0]PETSC ERROR: #8 MatCreateAIJ() line 3765 in /opt/exp_soft/ippolito/petsc/src/mat/impls/aij/mpi/mpiaij.c [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2151-g30fc1d0 GIT Date: 2015-03-03 23:20:18 -0600 [0]PETSC ERROR: NIS2D on a petsc_dev named tesla02.ba.infn.it by ippolito Thu Mar 5 17:35:15 2015 [0]PETSC ERROR: Configure options --PETSC_ARCH=petsc_dev --PETSC_DIR=/opt/exp_soft/ippolito/petsc --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --with-debugging=0 --CFLAGS=-fopenmp --CXXFLAGS=-fopenmp --FFLAGS=-fopenmp COPTFLAGS="-O3 -march=native -mtune=native" CXXOPTFLAGS="-O3 -march=native -mtune=native" FOPTFLAGS="-O3 -march=native -mtune=native" --with-large-file-io=1 --with-openmp --with-pthreadclasses --with-threadcomm --download-cmake=yes --download-metis --download-parmetis --download-superlu_dist --download-mpich --download-fblaslapack -download-hypre -download-ml [0]PETSC ERROR: #9 User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 18548 RUNNING AT tesla02 = EXIT CODE: 59 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ===================================================================================