Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Tue Nov 4 12:56:49 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --download-parmetis --download-metis --download-hypre --download-superlu_dist --with-batch=1 --CPPFLAGS=-mmic --CFLAGS="${CEE_OPTIONS}" --CXXFLAGS="${CEE_OPTIONS}" --FFLAGS="${CEE_OPTIONS}" --with-mpi=1 --known-mpi-shared-libraries=1 --with-mpi-include=/global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/include --with-mpi-lib=/global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/lib --with-mpicc=/global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/mpicc --with-mpicxx=/global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/mpicxx --with-mpif90=/global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/mpif90 --with-mpiexec=/global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/mpiexec --with-shared-libraries=0 --with-x=0 --with-64-bit-indices --with-debugging=1 PETSC_ARCH=arch-knc-dbg64 Working directory: /chos/global/u2/m/madams/petsc_private Machine platform: ('Linux', 'bint01', '2.6.32-431.20.3.el6.nersc.x86_64', '#1 SMP Fri Jun 20 02:34:38 PDT 2014', 'x86_64', 'x86_64') Python version: 2.6.6 (r266:84292, Nov 21 2013, 12:39:37) [GCC 4.4.7 20120313 (Red Hat 4.4.7-3)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/framework.py:823) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:823) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /global/homes/m/madams/git-fat/gdb...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/gdb...not found Checking for program /global/homes/m/madams/git-fat/gdb...not found Checking for program /usr/common/usg/bin/gdb...not found Checking for program /usr/common/mss/bin/gdb...not found Checking for program /usr/common/nsg/bin/gdb...not found Checking for program /usr/lib64/qt-3.3/bin/gdb...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/gdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/gdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/gdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/gdb...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/gdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/gdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/gdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/gdb...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/gdb...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/gdb...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/gdb...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/gdb...not found Checking for program /usr/syscom/nsg/sbin/gdb...not found Checking for program /usr/syscom/nsg/bin/gdb...not found Checking for program /usr/share/Modules/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /global/homes/m/madams/git-fat/dbx...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/dbx...not found Checking for program /global/homes/m/madams/git-fat/dbx...not found Checking for program /usr/common/usg/bin/dbx...not found Checking for program /usr/common/mss/bin/dbx...not found Checking for program /usr/common/nsg/bin/dbx...not found Checking for program /usr/lib64/qt-3.3/bin/dbx...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/dbx...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/dbx...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/dbx...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/dbx...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/dbx...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/dbx...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/dbx...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/dbx...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/dbx...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/dbx...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/dbx...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/dbx...not found Checking for program /usr/syscom/nsg/sbin/dbx...not found Checking for program /usr/syscom/nsg/bin/dbx...not found Checking for program /usr/share/Modules/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /global/homes/m/madams/dbx...not found Checking for program /global/homes/m/madams/git-fat/xdb...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/xdb...not found Checking for program /global/homes/m/madams/git-fat/xdb...not found Checking for program /usr/common/usg/bin/xdb...not found Checking for program /usr/common/mss/bin/xdb...not found Checking for program /usr/common/nsg/bin/xdb...not found Checking for program /usr/lib64/qt-3.3/bin/xdb...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/xdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/xdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/xdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/xdb...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/xdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/xdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/xdb...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/xdb...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/xdb...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/xdb...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/xdb...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/xdb...not found Checking for program /usr/syscom/nsg/sbin/xdb...not found Checking for program /usr/syscom/nsg/bin/xdb...not found Checking for program /usr/share/Modules/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /global/homes/m/madams/xdb...not found Checking for program /global/homes/m/madams/git-fat/dsymutil...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/dsymutil...not found Checking for program /global/homes/m/madams/git-fat/dsymutil...not found Checking for program /usr/common/usg/bin/dsymutil...not found Checking for program /usr/common/mss/bin/dsymutil...not found Checking for program /usr/common/nsg/bin/dsymutil...not found Checking for program /usr/lib64/qt-3.3/bin/dsymutil...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/dsymutil...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/dsymutil...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/dsymutil...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/dsymutil...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/dsymutil...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/dsymutil...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/dsymutil...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/dsymutil...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/dsymutil...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/dsymutil...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/dsymutil...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/dsymutil...not found Checking for program /usr/syscom/nsg/sbin/dsymutil...not found Checking for program /usr/syscom/nsg/bin/dsymutil...not found Checking for program /usr/share/Modules/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /global/homes/m/madams/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /global/homes/m/madams/git-fat/git...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/git...not found Checking for program /global/homes/m/madams/git-fat/git...not found Checking for program /usr/common/usg/bin/git...not found Checking for program /usr/common/mss/bin/git...not found Checking for program /usr/common/nsg/bin/git...not found Checking for program /usr/lib64/qt-3.3/bin/git...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/git...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/git...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/git...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/git...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/git...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/git...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/git...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/git...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/git...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/git...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/git...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/git...not found Checking for program /usr/syscom/nsg/sbin/git...not found Checking for program /usr/syscom/nsg/bin/git...not found Checking for program /usr/share/Modules/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.7.1 ================================================================================ TEST configureMercurial from config.sourceControl(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /global/homes/m/madams/git-fat/hg...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/hg...not found Checking for program /global/homes/m/madams/git-fat/hg...not found Checking for program /usr/common/usg/bin/hg...not found Checking for program /usr/common/mss/bin/hg...not found Checking for program /usr/common/nsg/bin/hg...not found Checking for program /usr/lib64/qt-3.3/bin/hg...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/hg...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/hg...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/hg...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/hg...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/hg...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/hg...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/hg...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/hg...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/hg...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/hg...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/hg...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/hg...not found Checking for program /usr/syscom/nsg/sbin/hg...not found Checking for program /usr/syscom/nsg/bin/hg...not found Checking for program /usr/share/Modules/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /global/homes/m/madams/hg...not found ================================================================================ TEST configureCVS from config.sourceControl(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /global/homes/m/madams/git-fat/cvs...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/cvs...not found Checking for program /global/homes/m/madams/git-fat/cvs...not found Checking for program /usr/common/usg/bin/cvs...not found Checking for program /usr/common/mss/bin/cvs...not found Checking for program /usr/common/nsg/bin/cvs...not found Checking for program /usr/lib64/qt-3.3/bin/cvs...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/cvs...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/cvs...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/cvs...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/cvs...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/cvs...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/cvs...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/cvs...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/cvs...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/cvs...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/cvs...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/cvs...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/cvs...not found Checking for program /usr/syscom/nsg/sbin/cvs...not found Checking for program /usr/syscom/nsg/bin/cvs...not found Checking for program /usr/share/Modules/bin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" Executing: cvs --version stdout: Concurrent Versions System (CVS) 1.11.23 (client/server) Copyright (C) 2006 Free Software Foundation, Inc. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /global/homes/m/madams/git-fat/svn...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/svn...not found Checking for program /global/homes/m/madams/git-fat/svn...not found Checking for program /usr/common/usg/bin/svn...not found Checking for program /usr/common/mss/bin/svn...not found Checking for program /usr/common/nsg/bin/svn...not found Checking for program /usr/lib64/qt-3.3/bin/svn...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/svn...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/svn...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/svn...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/svn...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/svn...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/svn...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/svn...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/svn...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/svn...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/svn...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/svn...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/svn...not found Checking for program /usr/syscom/nsg/sbin/svn...not found Checking for program /usr/syscom/nsg/bin/svn...not found Checking for program /usr/share/Modules/bin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.6.11 ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 5 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/global/homes/m/madams/petsc_private" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) bin/maint exists. This appears to be a repository clone Defined "VERSION_GIT" to ""v3.5.2-143-gc9e98f6"" Defined "VERSION_DATE_GIT" to ""2014-09-09 13:52:27 -0500"" Defined "VERSION_BRANCH_GIT" to ""master"" ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureETags from PETSc.utilities.Etags(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-knc-dbg64"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /chos/global/u2/m/madams/petsc_private/arch-knc-dbg64/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/chos/global/u2/m/madams/petsc_private/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py:1529) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1529) **** printenv **** MPIEXEC=aprun CHOMBO_DIR=/global/homes/m/madams/Chombo LOADEDMODULES=modules:nsg/1.2.0:torque/4.2.6:moab/7.2.6:intel/15.0.0:impi/5.0.1:usg-default-modules/1.1:totalview/8T.12.0-1 GROUP=madams INTEL_LICENSE_FILE=/global/common/shared/usg/licenses/intel/license.dat REMOTEHOST=edison12-eth5.nersc.gov TVDSVRLAUNCHCMD=ssh -i /global/homes/m/madams/.ssh/batchmode -n -o StrictHostKeyChecking=no -o UserKnownHostsFile=/dev/null LESSOPEN=|/usr/bin/lesspipe.sh %s HOSTTYPE=x86_64-linux CH_TIMER=FALSE SSH_CLIENT=128.55.72.32 39681 22 CPATH=/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/include:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/include/fftw:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/tbb/include PBS_BIN=/usr/syscom/nsg/opt/torque/4.2.6/bin CEE_OPTIONS=-mmic -mkl -fp-model precise PATH=/global/homes/m/madams/git-fat:/usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin:/global/homes/m/madams/git-fat:/usr/common/usg/bin:/usr/common/mss/bin:/usr/common/nsg/bin:/usr/lib64/qt-3.3/bin:/global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin:/global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic:/usr/syscom/nsg/opt/moab/7.2.6/sbin:/usr/syscom/nsg/opt/moab/7.2.6/bin:/usr/syscom/nsg/opt/torque/4.2.6/sbin:/usr/syscom/nsg/opt/torque/4.2.6/bin:/usr/syscom/nsg/sbin:/usr/syscom/nsg/bin:/usr/share/Modules/bin:/usr/local/bin:/bin:/usr/bin QTDIR=/usr/lib64/qt-3.3 CH_OUTPUT_INTERVAL=100000 MIC_LD_LIBRARY_PATH=/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/tbb/lib/mic:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/lib/mic:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/compiler/lib/mic:/opt/intel/mic/coi/device-linux-release/lib:/opt/intel/mic/myo/lib SSH_CONNECTION=128.55.72.32 39681 128.55.69.17 22 PAT_RT_HWPC=1 QTLIB=/usr/lib64/qt-3.3/lib TERM=xterm SHELL=/bin/csh LM_LICENSE_FILE=/usr/common/usg/totalview/toolworks/flexlm-10.8.0-3/license.dat LIBRARY_PATH=/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/tbb/lib/intel64/gcc4.4:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/lib/intel64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/ipp/lib/intel64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/compiler/lib:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/ipp/lib:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/compiler/lib/intel64 INCLUDE=/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/include/mic/ilp64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/include/mic/lp64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/include:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/include/intel64/ilp64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/include/intel64/lp64 QTINC=/usr/lib64/qt-3.3/include FORT_BUFFERED=yes G_BROKEN_FILENAMES=1 LD_LIBRARY_PATH=/global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/lib:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/lib:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/tbb/lib/intel64/gcc4.4:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/lib/intel64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/compiler/lib/intel64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/ipp/lib/intel64:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/compiler/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/lib/intel64:/global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/lib:/usr/syscom/nsg/opt/moab/7.2.6/lib:/usr/syscom/nsg/opt/torque/4.2.6/lib:/usr/syscom/nsg/lib I_MPI_MIC=enable PETSC_DIR=/global/homes/m/madams/petsc_private GSCRATCH2=/global/scratch2/sd/madams MANPATH=/usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/man:/usr/common/usg/man:/usr/common/mss/man:/usr/common/nsg/man:/global/babbage/nsg/opt/intel/impi/5.0.1.035/man:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/man/en_US:/usr/syscom/nsg/opt/moab/7.2.6/share/man:/usr/syscom/nsg/opt/torque/4.2.6/share/man:/usr/syscom/nsg/man:/usr/share/Modules/man:/usr/share/man/overrides:/usr/share/man:/usr/man/overrides:/usr/man OSTYPE=linux LOGNAME=madams SVN_EDITOR=vi HOME=/global/homes/m/madams MODULESHOME=/usr/share/Modules MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles:/usr/common/usg/Modules/modulefiles:/usr/syscom/nsg/modulefiles:/usr/syscom/nsg/opt/modulefiles GSCRATCH=/global/scratch2/sd/madams ARGS=-nxpe 4 -nype 2 -nzpe 2 -dom_x_hi 2.0 -nsmoothsfmg 1 MPICH_GNI_MDD_SHARING=disabled NSG_HOME=/usr/syscom/nsg SHLVL=2 MOAB_BIN=/usr/syscom/nsg/opt/moab/7.2.6/bin PSORT_DIR=/global/homes/m/madams/psorting HOST=bint01 MIC_LIBRARY_PATH=/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/compiler/lib/mic:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl/lib/mic:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/tbb/lib/mic MOD_NAME=mod NSS_STRICT_NOFORK=DISABLED I_MPI_ROOT=/global/babbage/nsg/opt/intel/impi/5.0.1.035 NLSPATH=/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/lib/intel64/locale/%l_%t/%N:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/intel64/locale/%l_%t/%N:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/ipp/lib/intel64/locale/%l_%t/%N:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/ipp/lib/locale/en_US/%N:/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/compiler/lib/intel64/locale/%l_%t/%N _=../arch-knc-dbg64.py TMPDIR=/global/scratch2/sd/madams IPM_REPORT=full KDEDIRS=/usr MACHTYPE=x86_64 NERSC_HOST=babbage PBS_HOME=/usr/syscom/nsg/opt/torque/server MKLROOT=/global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mkl SSH_TTY=/dev/pts/5 PE_PRODUCT_LIST=TOTALVIEW HOSTNAME=bint01 MOABHOMEDIR=/usr/syscom/nsg/opt/moab/spool VENDOR=unknown I_MPI_MPIRUN_CLEANUP=1 PWD=/global/homes/m/madams/petsc_private SCRATCH=/global/scratch2/sd/madams MAIL=/var/spool/mail/madams _LMFILES_=/usr/share/Modules/modulefiles/modules:/usr/syscom/nsg/modulefiles/nsg/1.2.0:/usr/syscom/nsg/opt/modulefiles/torque/4.2.6:/usr/syscom/nsg/opt/modulefiles/moab/7.2.6:/usr/common/usg/Modules/modulefiles/intel/15.0.0:/usr/common/usg/Modules/modulefiles/impi/5.0.1:/usr/common/usg/Modules/modulefiles/usg-default-modules/1.1:/usr/common/usg/Modules/modulefiles/totalview/8T.12.0-1 USER=madams ================================================================================ TEST resetEnvCompilers from config.setCompilers(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py:1536) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1536) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py:1501) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1501) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py:1520) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1520) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py:398) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:398) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py:408) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:408) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to "${CEE_OPTIONS}" Initialized CFLAGS to "${CEE_OPTIONS}" Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to "${CEE_OPTIONS}" Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to "${CEE_OPTIONS}" Initialized FFLAGS to "${CEE_OPTIONS}" Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to -mmic Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py:534) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:534) Locate a functional C compiler Executing: mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /global/homes/m/madams/git-fat/mpicc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/mpicc...not found Checking for program /global/homes/m/madams/git-fat/mpicc...not found Checking for program /usr/common/usg/bin/mpicc...not found Checking for program /usr/common/mss/bin/mpicc...not found Checking for program /usr/common/nsg/bin/mpicc...not found Checking for program /usr/lib64/qt-3.3/bin/mpicc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/mpicc...found Defined make macro "CC" to "mpicc" Pushing language C All intermediate test results are stored in /global/scratch2/sd/madams/petsc-VGa0sP All intermediate test results are stored in /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers Executing: mpicc -c -o /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.o -I/global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers "${CEE_OPTIONS}" -mmic /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: cc1: error: unrecognized command line option "-mmic -mkl -fp-model precise" Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with mpicc. MPI installation mpicc is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CC" Executing: hcc --help Checking for program /global/homes/m/madams/git-fat/hcc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/hcc...not found Checking for program /global/homes/m/madams/git-fat/hcc...not found Checking for program /usr/common/usg/bin/hcc...not found Checking for program /usr/common/mss/bin/hcc...not found Checking for program /usr/common/nsg/bin/hcc...not found Checking for program /usr/lib64/qt-3.3/bin/hcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/hcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/hcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/hcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/hcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/hcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/hcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/hcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/hcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/hcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/hcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/hcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/hcc...not found Checking for program /usr/syscom/nsg/sbin/hcc...not found Checking for program /usr/syscom/nsg/bin/hcc...not found Checking for program /usr/share/Modules/bin/hcc...not found Checking for program /usr/local/bin/hcc...not found Checking for program /bin/hcc...not found Checking for program /usr/bin/hcc...not found Checking for program /global/homes/m/madams/hcc...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/hcc...not found Checking for program /global/homes/m/madams/git-fat/mpcc_r...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/mpcc_r...not found Checking for program /global/homes/m/madams/git-fat/mpcc_r...not found Checking for program /usr/common/usg/bin/mpcc_r...not found Checking for program /usr/common/mss/bin/mpcc_r...not found Checking for program /usr/common/nsg/bin/mpcc_r...not found Checking for program /usr/lib64/qt-3.3/bin/mpcc_r...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/mpcc_r...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/mpcc_r...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/mpcc_r...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/mpcc_r...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/mpcc_r...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/mpcc_r...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/mpcc_r...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/mpcc_r...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/mpcc_r...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/mpcc_r...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/mpcc_r...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/mpcc_r...not found Checking for program /usr/syscom/nsg/sbin/mpcc_r...not found Checking for program /usr/syscom/nsg/bin/mpcc_r...not found Checking for program /usr/share/Modules/bin/mpcc_r...not found Checking for program /usr/local/bin/mpcc_r...not found Checking for program /bin/mpcc_r...not found Checking for program /usr/bin/mpcc_r...not found Checking for program /global/homes/m/madams/mpcc_r...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/mpcc_r...not found Checking for program /global/homes/m/madams/git-fat/mpcc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/mpcc...not found Checking for program /global/homes/m/madams/git-fat/mpcc...not found Checking for program /usr/common/usg/bin/mpcc...not found Checking for program /usr/common/mss/bin/mpcc...not found Checking for program /usr/common/nsg/bin/mpcc...not found Checking for program /usr/lib64/qt-3.3/bin/mpcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/mpcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/mpcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/mpcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/mpcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/mpcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/mpcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/mpcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/mpcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/mpcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/mpcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/mpcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/mpcc...not found Checking for program /usr/syscom/nsg/sbin/mpcc...not found Checking for program /usr/syscom/nsg/bin/mpcc...not found Checking for program /usr/share/Modules/bin/mpcc...not found Checking for program /usr/local/bin/mpcc...not found Checking for program /bin/mpcc...not found Checking for program /usr/bin/mpcc...not found Checking for program /global/homes/m/madams/mpcc...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/mpcc...not found Checking for program /global/homes/m/madams/git-fat/mpxlc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/mpxlc...not found Checking for program /global/homes/m/madams/git-fat/mpxlc...not found Checking for program /usr/common/usg/bin/mpxlc...not found Checking for program /usr/common/mss/bin/mpxlc...not found Checking for program /usr/common/nsg/bin/mpxlc...not found Checking for program /usr/lib64/qt-3.3/bin/mpxlc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/mpxlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/mpxlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/mpxlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/mpxlc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/mpxlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/mpxlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/mpxlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/mpxlc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/mpxlc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/mpxlc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/mpxlc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/mpxlc...not found Checking for program /usr/syscom/nsg/sbin/mpxlc...not found Checking for program /usr/syscom/nsg/bin/mpxlc...not found Checking for program /usr/share/Modules/bin/mpxlc...not found Checking for program /usr/local/bin/mpxlc...not found Checking for program /bin/mpxlc...not found Checking for program /usr/bin/mpxlc...not found Checking for program /global/homes/m/madams/mpxlc...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/mpxlc...not found Checking for program /global/homes/m/madams/git-fat/gcc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/gcc...not found Checking for program /global/homes/m/madams/git-fat/gcc...not found Checking for program /usr/common/usg/bin/gcc...not found Checking for program /usr/common/mss/bin/gcc...not found Checking for program /usr/common/nsg/bin/gcc...not found Checking for program /usr/lib64/qt-3.3/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/gcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/gcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/gcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/gcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/gcc...not found Checking for program /usr/syscom/nsg/sbin/gcc...not found Checking for program /usr/syscom/nsg/bin/gcc...not found Checking for program /usr/share/Modules/bin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C Executing: gcc -c -o /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.o -I/global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers "${CEE_OPTIONS}" -mmic /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: cc1: error: unrecognized command line option "-mmic -mkl -fp-model precise" cc1: error: unrecognized command line option "-mmic" Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with gcc. Deleting "CC" Executing: cc --help stdout: Usage: cc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by cc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /global/homes/m/madams/git-fat/cc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/cc...not found Checking for program /global/homes/m/madams/git-fat/cc...not found Checking for program /usr/common/usg/bin/cc...not found Checking for program /usr/common/mss/bin/cc...not found Checking for program /usr/common/nsg/bin/cc...not found Checking for program /usr/lib64/qt-3.3/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/cc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/cc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/cc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/cc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/cc...not found Checking for program /usr/syscom/nsg/sbin/cc...not found Checking for program /usr/syscom/nsg/bin/cc...not found Checking for program /usr/share/Modules/bin/cc...not found Checking for program /usr/local/bin/cc...not found Checking for program /bin/cc...not found Checking for program /usr/bin/cc...found Defined make macro "CC" to "cc" Pushing language C Executing: cc -c -o /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.o -I/global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers "${CEE_OPTIONS}" -mmic /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: cc1: error: unrecognized command line option "-mmic -mkl -fp-model precise" cc1: error: unrecognized command line option "-mmic" Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with cc. Deleting "CC" Checking for program /global/homes/m/madams/git-fat/win32fe...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/win32fe...not found Checking for program /global/homes/m/madams/git-fat/win32fe...not found Checking for program /usr/common/usg/bin/win32fe...not found Checking for program /usr/common/mss/bin/win32fe...not found Checking for program /usr/common/nsg/bin/win32fe...not found Checking for program /usr/lib64/qt-3.3/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/win32fe...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/win32fe...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/win32fe...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/win32fe...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/win32fe...not found Checking for program /usr/syscom/nsg/sbin/win32fe...not found Checking for program /usr/syscom/nsg/bin/win32fe...not found Checking for program /usr/share/Modules/bin/win32fe...not found Checking for program /usr/local/bin/win32fe...not found Checking for program /bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /global/homes/m/madams/win32fe...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/win32fe...not found Checking for program /global/homes/m/madams/git-fat/kcc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/kcc...not found Checking for program /global/homes/m/madams/git-fat/kcc...not found Checking for program /usr/common/usg/bin/kcc...not found Checking for program /usr/common/mss/bin/kcc...not found Checking for program /usr/common/nsg/bin/kcc...not found Checking for program /usr/lib64/qt-3.3/bin/kcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/kcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/kcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/kcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/kcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/kcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/kcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/kcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/kcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/kcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/kcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/kcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/kcc...not found Checking for program /usr/syscom/nsg/sbin/kcc...not found Checking for program /usr/syscom/nsg/bin/kcc...not found Checking for program /usr/share/Modules/bin/kcc...not found Checking for program /usr/local/bin/kcc...not found Checking for program /bin/kcc...not found Checking for program /usr/bin/kcc...not found Checking for program /global/homes/m/madams/kcc...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/kcc...not found Checking for program /global/homes/m/madams/git-fat/xlc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/xlc...not found Checking for program /global/homes/m/madams/git-fat/xlc...not found Checking for program /usr/common/usg/bin/xlc...not found Checking for program /usr/common/mss/bin/xlc...not found Checking for program /usr/common/nsg/bin/xlc...not found Checking for program /usr/lib64/qt-3.3/bin/xlc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/xlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/xlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/xlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/xlc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/xlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/xlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/xlc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/xlc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/xlc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/xlc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/xlc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/xlc...not found Checking for program /usr/syscom/nsg/sbin/xlc...not found Checking for program /usr/syscom/nsg/bin/xlc...not found Checking for program /usr/share/Modules/bin/xlc...not found Checking for program /usr/local/bin/xlc...not found Checking for program /bin/xlc...not found Checking for program /usr/bin/xlc...not found Checking for program /global/homes/m/madams/xlc...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/xlc...not found Checking for program /global/homes/m/madams/git-fat/icc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/icc...not found Checking for program /global/homes/m/madams/git-fat/icc...not found Checking for program /usr/common/usg/bin/icc...not found Checking for program /usr/common/mss/bin/icc...not found Checking for program /usr/common/nsg/bin/icc...not found Checking for program /usr/lib64/qt-3.3/bin/icc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/icc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/icc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/icc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/icc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/icc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/icc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/icc...found Defined make macro "CC" to "icc" Pushing language C Executing: icc -c -o /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.o -I/global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers "${CEE_OPTIONS}" -mmic /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: icc: command line warning #10159: invalid argument for option '-m' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: icc -c -o /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.o -I/global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers "${CEE_OPTIONS}" -mmic /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: icc: command line warning #10159: invalid argument for option '-m' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: icc -o /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest "${CEE_OPTIONS}" /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 6 stderr: icc: command line warning #10159: invalid argument for option '-m' Popping language C Error testing C compiler: Cannot compile/link C with icc. Deleting "CC" Checking for program /global/homes/m/madams/git-fat/ecc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/ecc...not found Checking for program /global/homes/m/madams/git-fat/ecc...not found Checking for program /usr/common/usg/bin/ecc...not found Checking for program /usr/common/mss/bin/ecc...not found Checking for program /usr/common/nsg/bin/ecc...not found Checking for program /usr/lib64/qt-3.3/bin/ecc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/ecc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/ecc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/ecc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/ecc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/ecc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/ecc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/ecc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/ecc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/ecc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/ecc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/ecc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/ecc...not found Checking for program /usr/syscom/nsg/sbin/ecc...not found Checking for program /usr/syscom/nsg/bin/ecc...not found Checking for program /usr/share/Modules/bin/ecc...not found Checking for program /usr/local/bin/ecc...not found Checking for program /bin/ecc...not found Checking for program /usr/bin/ecc...not found Checking for program /global/homes/m/madams/ecc...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/ecc...not found Checking for program /global/homes/m/madams/git-fat/win32fe...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/win32fe...not found Checking for program /global/homes/m/madams/git-fat/win32fe...not found Checking for program /usr/common/usg/bin/win32fe...not found Checking for program /usr/common/mss/bin/win32fe...not found Checking for program /usr/common/nsg/bin/win32fe...not found Checking for program /usr/lib64/qt-3.3/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/win32fe...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/win32fe...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/win32fe...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/win32fe...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/win32fe...not found Checking for program /usr/syscom/nsg/sbin/win32fe...not found Checking for program /usr/syscom/nsg/bin/win32fe...not found Checking for program /usr/share/Modules/bin/win32fe...not found Checking for program /usr/local/bin/win32fe...not found Checking for program /bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /global/homes/m/madams/win32fe...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/win32fe...not found Checking for program /global/homes/m/madams/git-fat/win32fe...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/win32fe...not found Checking for program /global/homes/m/madams/git-fat/win32fe...not found Checking for program /usr/common/usg/bin/win32fe...not found Checking for program /usr/common/mss/bin/win32fe...not found Checking for program /usr/common/nsg/bin/win32fe...not found Checking for program /usr/lib64/qt-3.3/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/win32fe...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/win32fe...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/win32fe...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/win32fe...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/win32fe...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/win32fe...not found Checking for program /usr/syscom/nsg/sbin/win32fe...not found Checking for program /usr/syscom/nsg/bin/win32fe...not found Checking for program /usr/share/Modules/bin/win32fe...not found Checking for program /usr/local/bin/win32fe...not found Checking for program /bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /global/homes/m/madams/win32fe...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/win32fe...not found Checking for program /global/homes/m/madams/git-fat/pgcc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/pgcc...not found Checking for program /global/homes/m/madams/git-fat/pgcc...not found Checking for program /usr/common/usg/bin/pgcc...not found Checking for program /usr/common/mss/bin/pgcc...not found Checking for program /usr/common/nsg/bin/pgcc...not found Checking for program /usr/lib64/qt-3.3/bin/pgcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/pgcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/pgcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/pgcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/pgcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/pgcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/pgcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/pgcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/pgcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/pgcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/pgcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/pgcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/pgcc...not found Checking for program /usr/syscom/nsg/sbin/pgcc...not found Checking for program /usr/syscom/nsg/bin/pgcc...not found Checking for program /usr/share/Modules/bin/pgcc...not found Checking for program /usr/local/bin/pgcc...not found Checking for program /bin/pgcc...not found Checking for program /usr/bin/pgcc...not found Checking for program /global/homes/m/madams/pgcc...not found Checking for program /global/homes/m/madams/petsc_private/bin/win32fe/pgcc...not found Checking for program /global/homes/m/madams/git-fat/gcc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/gcc...not found Checking for program /global/homes/m/madams/git-fat/gcc...not found Checking for program /usr/common/usg/bin/gcc...not found Checking for program /usr/common/mss/bin/gcc...not found Checking for program /usr/common/nsg/bin/gcc...not found Checking for program /usr/lib64/qt-3.3/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/gcc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/gcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/gcc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/gcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/gcc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/gcc...not found Checking for program /usr/syscom/nsg/sbin/gcc...not found Checking for program /usr/syscom/nsg/bin/gcc...not found Checking for program /usr/share/Modules/bin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C Executing: gcc -c -o /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.o -I/global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers "${CEE_OPTIONS}" -mmic /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: cc1: error: unrecognized command line option "-mmic -mkl -fp-model precise" cc1: error: unrecognized command line option "-mmic" Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with gcc. Deleting "CC" Checking for program /global/homes/m/madams/git-fat/cc...not found Checking for program /usr/common/usg/totalview/toolworks/totalview.8T.12.0-1/bin/cc...not found Checking for program /global/homes/m/madams/git-fat/cc...not found Checking for program /usr/common/usg/bin/cc...not found Checking for program /usr/common/mss/bin/cc...not found Checking for program /usr/common/nsg/bin/cc...not found Checking for program /usr/lib64/qt-3.3/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.1.035/intel64/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64_mic/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/gdb/intel64/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/debugger/python/intel64/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/impi/5.0.0.035/intel64/bin/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/mpirt/bin/intel64/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64/cc...not found Checking for program /global/babbage/nsg/opt/intel/composerxe/composer_xe_2015.0.090/bin/intel64_mic/cc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/sbin/cc...not found Checking for program /usr/syscom/nsg/opt/moab/7.2.6/bin/cc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/sbin/cc...not found Checking for program /usr/syscom/nsg/opt/torque/4.2.6/bin/cc...not found Checking for program /usr/syscom/nsg/sbin/cc...not found Checking for program /usr/syscom/nsg/bin/cc...not found Checking for program /usr/share/Modules/bin/cc...not found Checking for program /usr/local/bin/cc...not found Checking for program /bin/cc...not found Checking for program /usr/bin/cc...found Defined make macro "CC" to "cc" Pushing language C Executing: cc -c -o /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.o -I/global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers "${CEE_OPTIONS}" -mmic /global/scratch2/sd/madams/petsc-VGa0sP/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: cc1: error: unrecognized command line option "-mmic -mkl -fp-model precise" cc1: error: unrecognized command line option "-mmic" Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with cc. Deleting "CC" ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Could not locate a functional C compiler ******************************************************************************* File "/chos/global/u2/m/madams/petsc_private/config/configure.py", line 272, in petsc_configure framework.configure(out = sys.stdout) File "/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/framework.py", line 935, in configure child.configure() File "/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py", line 1564, in configure self.executeTest(self.checkCCompiler) File "/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/chos/global/u2/m/madams/petsc_private/config/BuildSystem/config/setCompilers.py", line 553, in checkCCompiler raise RuntimeError('Could not locate a functional C compiler') ================================================================================ Finishing Configure Run at Tue Nov 4 12:56:52 2014 ================================================================================