make[1]: Entering directory `petsc' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html ========================================== Starting on local at Sun Nov 2 14:53:01 CET 2014 Machine characteristics: Darwin local 13.4.0 Darwin Kernel Version 13.4.0: Sun Aug 17 19:50:11 PDT 2014; root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64 ----------------------------------------- Using PETSc directory: petsc Using PETSc arch: arch-darwin-c-debug ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 5 PETSC_VERSION_SUBMINOR 2 PETSC_VERSION_PATCH 0 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --download-hypre --download-mumps --download-scalapack --download-ptscotch --with-chtml=0 --with-sowing=0 --download-hwloc-shared=1 --with-shared-libraries=1 Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_RTLD_DEFAULT 1 #define PETSC_UINTPTR_T uintptr_t #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_SSL 1 #define PETSC_DEPRECATED(why) __attribute((deprecated)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_MPI 1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_DIR "petsc" #define PETSC_HAVE_X 1 #define PETSC_HAVE_HYPRE 1 #define PETSC_LIB_DIR "petsc/arch-darwin-c-debug/lib" #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_ISATTY 1 #define PETSC_SLSUFFIX "dylib" #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_UNUSED __attribute((unused)) #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_PTSCOTCH 1 #define PETSC_DIR_SEPARATOR '/' #define PETSC_PATH_SEPARATOR ':' #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_HAVE_HWLOC 1 #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_CXXABI_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT restrict #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBBLAS 1 #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBGFORTRAN 1 #define PETSC_HAVE_LIBSCALAPACK 1 #define PETSC_HAVE_LIBGCC_EXT_10_5 1 #define PETSC_HAVE_LIBLAPACK 1 #define PETSC_HAVE_LIBCRYPTO 1 #define PETSC_HAVE_LIBPTSCOTCH 1 #define PETSC_HAVE_LIBMPI_CXX 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBSCOTCHERR 1 #define PETSC_HAVE_LIBMPI_MPIFH 1 #define PETSC_HAVE_LIBCLANG_RT_OSX 1 #define PETSC_HAVE_LIBDMUMPS 1 #define PETSC_HAVE_LIBPTESMUMPS 1 #define PETSC_HAVE_LIBMUMPS_COMMON 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBCLANG_RT 1 #define PETSC_HAVE_LIBHWLOC 1 #define PETSC_HAVE_LIBZMUMPS 1 #define PETSC_HAVE_LIBMPI_USEMPI 1 #define PETSC_HAVE_LIBSSL 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LIBHYPRE 1 #define PETSC_HAVE_LIBC__ 1 #define PETSC_HAVE_LIBPORD 1 #define PETSC_HAVE_LIBSMUMPS 1 #define PETSC_HAVE_LIBPTSCOTCHERR 1 #define PETSC_HAVE_LIBCMUMPS 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_LIBX11 1 #define PETSC_HAVE_LIBQUADMATH 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBSCOTCH 1 #define PETSC_ARCH "arch-darwin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 8 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_SYSCTLBYNAME 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_OMPI_MINOR_VERSION 8 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_OMPI_RELEASE_VERSION 3 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-11-01 10:19:24 -0500" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.5.2-885-gea1a9a6" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC_HAVE_CLOSURE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_USE_BYTES_FOR_SIZE 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 ----------------------------------------- Using C/C++ compile: mpicc -c -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -Ipetsc/include -Ipetsc/arch-darwin-c-debug/include -I/usr/local/Cellar/open-mpi/1.8.3/include -I/opt/X11/include mpicc -show: clang -I/usr/local/Cellar/open-mpi/1.8.3/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.3/lib -lmpi Using Fortran compile: mpif90 -c -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -Ipetsc/include -Ipetsc/arch-darwin-c-debug/include -I/usr/local/Cellar/open-mpi/1.8.3/include -I/opt/X11/include mpif90 -show: /usr/local/bin/gfortran -I/usr/local/Cellar/open-mpi/1.8.3/include -Wl,-commons,use_dylibs -Wl,-commons,use_dylibs -I/usr/local/Cellar/open-mpi/1.8.3/lib -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.3/lib -lmpi_usempi -lmpi_mpifh -lmpi ----------------------------------------- Using C/C++ linker: mpicc Using C/C++ flags: -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 Using Fortran linker: mpif90 Using Fortran flags: -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 ----------------------------------------- Using libraries: -Lpetsc/arch-darwin-c-debug/lib -Lpetsc/arch-darwin-c-debug/lib -lpetsc -lHYPRE -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.3/lib -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/6.0/lib/darwin -lclang_rt.osx -lmpi_cxx -lc++ -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/lib/darwin -lclang_rt.osx -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lscotch -lscotcherr -L/opt/X11/lib -lX11 -lhwloc -lpthread -lssl -lcrypto -lmpi_usempi -lmpi_mpifh -lgfortran -L/usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin13.4.0/4.9.1 -L/usr/local/Cellar/gcc/4.9.1/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lclang_rt.osx -lmpi_cxx -lc++ -lclang_rt.osx -lm -lz -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.3/lib -ldl -lmpi -lSystem -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/lib/darwin -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/lib/darwin -lclang_rt.osx -ldl ------------------------------------------ Using mpiexec: /usr/local/Cellar/open-mpi/1.8.3/bin/mpiexec ========================================== Building PETSc using GNU Make with 4 build threads ========================================== make[2]: Entering directory `petsc' Use "/usr/bin/make V=1" to see the verbose compile lines. CC arch-darwin-c-debug/obj/src/dm/impls/network/ftn-auto/networkf.o CC arch-darwin-c-debug/obj/src/ksp/pc/impls/jacobi/ftn-auto/jacobif.o CC arch-darwin-c-debug/obj/src/ksp/pc/impls/factor/ftn-auto/factorf.o CC arch-darwin-c-debug/obj/src/ksp/pc/impls/galerkin/galerkin.o petsc/src/dm/impls/network/ftn-auto/networkf.c:166:52: error: too many arguments to function call, expected 3, have 4 (DM)PetscToPointer((oldDM) ),partitioner,*overlap,distDM); ^~~~~~ petsc/include/petscdmnetwork.h:31:1: note: 'DMNetworkDistribute' declared here PETSC_EXTERN PetscErrorCode DMNetworkDistribute(DM, PetscInt,DM*); ^ petsc/include/petscsys.h:83:22: note: expanded from macro 'PETSC_EXTERN' #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC ^ 1 error generated. make[2]: *** [arch-darwin-c-debug/obj/src/dm/impls/network/ftn-auto/networkf.o] Error 1 make[2]: *** Waiting for unfinished jobs.... petsc/src/ksp/pc/impls/factor/ftn-auto/factorf.c:128:27: error: too few arguments to function call, expected 2, have 1 (PC)PetscToPointer((pc) )); ^ petsc/include/petscpc.h:236:1: note: 'PCFactorSetAllowDiagonalFill' declared here PETSC_EXTERN PetscErrorCode PCFactorSetAllowDiagonalFill(PC,PetscBool); ^ petsc/include/petscsys.h:83:22: note: expanded from macro 'PETSC_EXTERN' #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC ^ petsc/src/ksp/pc/impls/jacobi/ftn-auto/jacobif.c:54:27: error: too few arguments to function call, expected 2, have 1 (PC)PetscToPointer((pc) )); ^ petsc/include/petscpc.h:187:1: note: 'PCJacobiSetUseAbs' declared here PETSC_EXTERN PetscErrorCode PCJacobiSetUseAbs(PC,PetscBool); ^ petsc/include/petscsys.h:83:22: note: expanded from macro 'PETSC_EXTERN' #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC ^ petsc/src/ksp/pc/impls/jacobi/ftn-auto/jacobif.c:57:11: warning: implicit declaration of function 'PCJacobiSetUseRowMax' is invalid in C99 [-Wimplicit-function-declaration] *__ierr = PCJacobiSetUseRowMax( ^ petsc/src/ksp/pc/impls/jacobi/ftn-auto/jacobif.c:61:11: warning: implicit declaration of function 'PCJacobiSetUseRowSum' is invalid in C99 [-Wimplicit-function-declaration] *__ierr = PCJacobiSetUseRowSum( ^ 2 warnings and 1 error generated. petsc/src/ksp/pc/impls/factor/ftn-auto/factorf.c:140:27: error: too few arguments to function call, expected 2, have 1 (PC)PetscToPointer((pc) )); ^ petsc/include/petscpc.h:234:1: note: 'PCFactorSetUseInPlace' declared here PETSC_EXTERN PetscErrorCode PCFactorSetUseInPlace(PC,PetscBool); ^ petsc/include/petscsys.h:83:22: note: expanded from macro 'PETSC_EXTERN' #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC ^ 2 errors generated. make[2]: *** [arch-darwin-c-debug/obj/src/ksp/pc/impls/jacobi/ftn-auto/jacobif.o] Error 1 make[2]: *** [arch-darwin-c-debug/obj/src/ksp/pc/impls/factor/ftn-auto/factorf.o] Error 1 make[2]: Leaving directory `petsc' make[1]: *** [gnumake] Error 2 make[1]: Leaving directory `petsc' **************************ERROR************************************* Error during compile, check arch-darwin-c-debug/conf/make.log Send it and arch-darwin-c-debug/conf/configure.log to petsc-maint@mcs.anl.gov ******************************************************************** Finishing at: Sun Nov 2 14:53:02 CET 2014