Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Sat Jun 28 16:58:09 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --download-fblaslapack=1 --download-mpich --download-viennacl --with-opencl-include=/opt/AMDAPP/include/ --with-opencl-lib=/opt/AMDAPP/lib/x86_64/libOpenCL.so --with-debugging=0 Working directory: /home/lucasogura/petsc Machine platform: ('Linux', 'lucasogura', '3.13.0-30-generic', '#54-Ubuntu SMP Mon Jun 9 22:45:01 UTC 2014', 'x86_64', 'x86_64') Python version: 2.7.6 (default, Mar 22 2014, 22:59:56) [GCC 4.8.2] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/lucasogura/petsc/config/BuildSystem/config/framework.py:823) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:823) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/lucasogura/petsc/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/local/sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /usr/local/games/dbx...not found Checking for program /home/lucasogura/dbx...not found Checking for program /usr/local/sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /usr/local/games/xdb...not found Checking for program /home/lucasogura/xdb...not found Checking for program /usr/local/sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /usr/local/games/dsymutil...not found Checking for program /home/lucasogura/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/home/lucasogura/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/sbin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.9.1 ================================================================================ TEST configureMercurial from config.sourceControl(/home/lucasogura/petsc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Sistema de controle de versão distribuído Mercurial (versão 2.8.2) ================================================================================ TEST configureCVS from config.sourceControl(/home/lucasogura/petsc/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/local/sbin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /usr/sbin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /sbin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/games/cvs...not found Checking for program /usr/local/games/cvs...not found Checking for program /home/lucasogura/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/lucasogura/petsc/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/local/sbin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /usr/sbin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /sbin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/games/svn...not found Checking for program /usr/local/games/svn...not found Checking for program /home/lucasogura/svn...not found ================================================================================ TEST configureMkdir from config.programs(/home/lucasogura/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /sbin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/lucasogura/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/sbin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/sbin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-8RbPfA All intermediate test results are stored in /tmp/petsc-8RbPfA/config.programs Executing: cd /tmp/petsc-8RbPfA/config.programs/autoconfdir&&/usr/bin/autoreconf autoreconf test successful! ================================================================================ TEST configurePrograms from config.programs(/home/lucasogura/petsc/config/BuildSystem/config/programs.py:66) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:66) Check for the programs needed to build and run PETSc Checking for program /usr/local/sbin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /sbin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-8RbPfA/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /sbin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-8RbPfA/config.programs/diff1" "/tmp/petsc-8RbPfA/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/lucasogura/ps...not found Checking for program /usr/local/sbin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/sbin/gzip...not found Checking for program /usr/bin/gzip...not found Checking for program /sbin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/lucasogura/petsc/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/lucasogura/petsc/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 4 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/lucasogura/petsc" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/home/lucasogura/petsc/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) bin/maint exists. This appears to be a repository clone Defined "VERSION_GIT" to ""v3.4.4-4963-g821251a"" Defined "VERSION_DATE_GIT" to ""2014-06-28 12:39:08 -0500"" ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/lucasogura/petsc/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/lucasogura/petsc/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise WARNING: ETags files have not been created Checking for program /usr/local/sbin/etags...not found Checking for program /usr/local/bin/etags...not found Checking for program /usr/sbin/etags...not found Checking for program /usr/bin/etags...not found Checking for program /sbin/etags...not found Checking for program /bin/etags...not found Checking for program /usr/games/etags...not found Checking for program /usr/local/games/etags...not found Checking for program /home/lucasogura/etags...not found Checking for program /home/lucasogura/petsc/bin/win32fe/etags...not found The etags command is not in your path, cannot build etags files ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/lucasogura/petsc/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-linux2-c-opt"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/home/lucasogura/petsc/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/home/lucasogura/petsc/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/home/lucasogura/petsc/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/home/lucasogura/petsc/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /home/lucasogura/petsc/arch-linux2-c-opt/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/home/lucasogura/petsc/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/home/lucasogura/petsc/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/home/lucasogura/petsc/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1515) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1515) **** printenv **** LC_NUMERIC=pt_BR.UTF-8 MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/lucasogura GNOME_DESKTOP_SESSION_ID=this-is-deprecated UPSTART_EVENTS=started starting LESSOPEN=| /usr/bin/lesspipe %s LIBGL_DRIVERS_PATH=/usr/lib/fglrx/dri:/usr/lib/x86_64-linux-gnu/dri:/usr/lib/dri:/usr/lib32/fglrx/dri:/usr/lib/i386-linux-gnu/dri XDG_VTNR=7 QT_IM_MODULE=ibus LOGNAME=lucasogura USER=lucasogura PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games LC_PAPER=pt_BR.UTF-8 GNOME_KEYRING_CONTROL=/run/user/1000/keyring-YNpjjc GTK_IM_MODULE=ibus AMDAPPSDKROOT=/opt/AMDAPP LD_LIBRARY_PATH=:/opt/AMDAPP/lib/x86_64:/opt/AMDAPP/lib/x86:/usr/lib32 SSH_AGENT_PID=1760 LANG=en_US.UTF-8 TERM=xterm SHELL=/bin/bash XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0 XAUTHORITY=/home/lucasogura/.Xauthority LANGUAGE=pt_BR:pt:pt_PT:en COMPIZ_CONFIG_PROFILE=ubuntu LC_MONETARY=pt_BR.UTF-8 QT_QPA_PLATFORMTHEME=appmenu-qt5 JOB=gnome-session TEXTDOMAIN=im-config UPSTART_INSTANCE= CLUTTER_IM_MODULE=xim WINDOWID=69206028 SESSIONTYPE=gnome-session XMODIFIERS=@im=ibus GPG_AGENT_INFO=/run/user/1000/keyring-YNpjjc/gpg:0:1 HOME=/home/lucasogura QT4_IM_MODULE=xim SELINUX_INIT=YES SHLVL=1 XDG_RUNTIME_DIR=/run/user/1000 INSTANCE=Unity LC_ADDRESS=pt_BR.UTF-8 SSH_AUTH_SOCK=/run/user/1000/keyring-YNpjjc/ssh VTE_VERSION=3409 GDMSESSION=ubuntu IM_CONFIG_PHASE=1 UPSTART_JOB=unity-settings-daemon TEXTDOMAINDIR=/usr/share/locale/ GNOME_KEYRING_PID=1693 XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0 LESSCLOSE=/usr/bin/lesspipe %s %s XDG_CURRENT_DESKTOP=Unity XDG_SESSION_ID=c2 DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-9gk5ERdYeF _=./configure DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path LC_IDENTIFICATION=pt_BR.UTF-8 DESKTOP_SESSION=ubuntu UPSTART_SESSION=unix:abstract=/com/ubuntu/upstart-session/1000/1696 XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/usr/share/upstart/xdg:/etc/xdg GTK_MODULES=overlay-scrollbar:unity-gtk-module UBUNTU_MENUPROXY=1 LC_NAME=pt_BR.UTF-8 OLDPWD=/home/lucasogura GDM_LANG=pt_BR LC_TELEPHONE=pt_BR.UTF-8 LC_MEASUREMENT=pt_BR.UTF-8 PWD=/home/lucasogura/petsc SSH_AGENT_LAUNCHER=upstart COLORTERM=gnome-terminal DISPLAY=:0 LC_TIME=pt_BR.UTF-8 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: XDG_DATA_DIRS=/usr/share/ubuntu:/usr/share/gnome:/usr/local/share/:/usr/share/ XDG_SEAT=seat0 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1522) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1522) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1487) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1487) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1506) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1506) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:398) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:398) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:408) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:408) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:524) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:524) Locate a functional C compiler Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C All intermediate test results are stored in /tmp/petsc-8RbPfA/config.setCompilers Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:559) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:559) Locate a functional C preprocessor Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Pushing language C Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 513 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 578 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 775 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 812 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 899 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 951 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 956 "/usr/include/stdlib.h" 2 3 4 # 968 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" 2 Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:593) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:593) Locate a functional CUDA compiler Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /home/lucasogura/nvcc...not found Checking for program /home/lucasogura/petsc/bin/win32fe/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /home/lucasogura/nvcc...not found Checking for program /home/lucasogura/petsc/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:631) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:631) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:743) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:743) Locate a functional Cxx compiler Checking for program /usr/local/sbin/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /usr/sbin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXX" to "g++" Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:781) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:781) Locate a functional Cxx preprocessor Checking for program /usr/local/sbin/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /usr/sbin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXXCPP" to "g++ -E" Pushing language Cxx Executing: g++ -E -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-8RbPfA/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.8/cstdlib" 1 3 # 39 "/usr/include/c++/4.8/cstdlib" 3 # 40 "/usr/include/c++/4.8/cstdlib" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 1 3 # 184 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 426 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 1 3 # 39 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 2 3 # 427 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 2 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/cpu_defines.h" 1 3 # 430 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 2 3 # 42 "/usr/include/c++/4.8/cstdlib" 2 3 # 72 "/usr/include/c++/4.8/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 32 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); # 235 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 236 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern unsigned long int strtoul_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern long long int strtoll_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern unsigned long long int strtoull_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern double strtod_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern float strtof_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern long double strtold_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 extern "C" { typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 54 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern "C" { # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 } # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 } # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 } # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *secure_getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))); # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 674 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 694 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (const char *__command) ; extern char *canonicalize_file_name (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (const void *, const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (const void *, const void *, void *); extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 812 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) throw (); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw (); extern int wctomb (char *__s, wchar_t __wchar) throw (); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 899 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 956 "/usr/include/stdlib.h" 2 3 4 # 968 "/usr/include/stdlib.h" 3 4 } # 73 "/usr/include/c++/4.8/cstdlib" 2 3 # 114 "/usr/include/c++/4.8/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } } # 196 "/usr/include/c++/4.8/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 228 "/usr/include/c++/4.8/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:898) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:898) Locate a functional Fortran compiler Checking for program /usr/local/sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FC" to "gfortran" Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:917) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:917) Make sure fortran comment "!" works Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:980) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:980) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid C linker flag -fPIC Adding C compiler flag -fPIC Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Executing: gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid FC linker flag -fPIC Adding FC compiler flag -fPIC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1013) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1013) ================================================================================ TEST checkArchiver from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1112) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1112) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-8RbPfA/config.setCompilers/libconf1.a /tmp/petsc-8RbPfA/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-8RbPfA/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-8RbPfA/config.setCompilers/libconf1.a /tmp/petsc-8RbPfA/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-8RbPfA/config.setCompilers/libconf1.a Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -L/tmp/petsc-8RbPfA/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1223) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1223) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker gcc using flags ['-shared'] Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -L/tmp/petsc-8RbPfA/config.setCompilers -lconftest Using shared linker gcc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1301) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1301) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: gcc -V Trying C linker flag -Wl,-rpath, Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -Wl,-rpath,/home/lucasogura/petsc -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/lucasogura/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: gcc -V Trying Cxx linker flag -Wl,-rpath, Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -Wl,-rpath,/home/lucasogura/petsc /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/lucasogura/petsc Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: gcc -V Trying FC linker flag -Wl,-rpath, Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -Wl,-rpath,/home/lucasogura/petsc -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/lucasogura/petsc Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1336) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1336) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1385) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1385) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-8RbPfA/config.headers Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 22 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 28 "/usr/include/dlfcn.h" 2 3 4 # 52 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 82 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 188 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-8RbPfA/config.libraries Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -fPIC /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC /tmp/petsc-8RbPfA/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker gcc using flags ['-shared'] Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "DYNAMICLINKER" to "gcc" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -ldl Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Could not load symbol\n"); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Invalid return from foo()\n"); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Could not close library\n"); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-8RbPfA/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -ldl Using dynamic linker gcc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1431) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1431) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "g++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "gfortran" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" Executing: uname -s stdout: Linux ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/home/lucasogura/petsc/config/PETSc/utilities/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/lucasogura/petsc/config/PETSc/utilities/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/lucasogura/petsc/config/PETSc/utilities/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.utilities.sharedLibraries(/home/lucasogura/petsc/config/PETSc/utilities/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/lucasogura/petsc/config/BuildSystem/config/compilerFlags.py:71) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:71) Get the default compiler flags Pushing language C Executing: gcc --version stdout: gcc (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: gcc gcc (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Trying C compiler flag -Wall Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -O Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O Popping language C Pushing language Cxx Executing: g++ --version stdout: g++ (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: g++ g++ (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Trying Cxx compiler flag -Wall Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -Wall -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -O Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Popping language Cxx Pushing language FC Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: gfortran GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Trying FC compiler flag -Wall Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Trying FC compiler flag -ffree-line-length-0 Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -O Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -O Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/home/lucasogura/petsc/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== ================================================================================ TEST checkRestrict from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:136) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:136) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-8RbPfA/config.compilers Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ float * restrict x;; ^ /tmp/petsc-8RbPfA/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function) /tmp/petsc-8RbPfA/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.compilers/conftest.c:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:309) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:309) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:107) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:107) Check for C keyword: static inline Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:320) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:320) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:163) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:163) Determines the libraries needed to link with C Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-8RbPfA/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-8RbPfA/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o Popping language C compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gcc compilers: Unknown arg COLLECT_GCC=gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Checking arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.8 compilers: Unknown arg --program-suffix=-4.8 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-libmudflap compilers: Unknown arg --disable-libmudflap compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.2 compilers: Unknown arg 4.8.2 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 4.8.2-19ubuntu1) compilers: Unknown arg 4.8.2-19ubuntu1) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-8RbPfA/config.compilers/conftest compilers: Unknown arg /tmp/petsc-8RbPfA/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. compilers: Checking arg /tmp/petsc-8RbPfA/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-8RbPfA/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-ldl', '-lgcc_s'] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:1327) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1327) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -MMD -MP /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -MMD -MP /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -MMD -MP /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Popping language FC ================================================================================ TEST checkRestrict from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:136) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:136) Check for the C/CXX restrict keyword Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-8RbPfA/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’ float * restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: g++ -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-8RbPfA/config.compilers/conftest.cc:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:358) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:358) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:333) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:333) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:121) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:121) Check for C++ keyword: static inline Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:412) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:412) Determines the libraries needed to link with C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-8RbPfA/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-L/usr/lib/gcc/x86_64-linux-gnu/4.8' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-8RbPfA/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/petsc-8RbPfA/config.compilers/conftest.o -rpath /usr/lib/gcc/x86_64-linux-gnu/4.8 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o Popping language Cxx compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=g++ compilers: Unknown arg COLLECT_GCC=g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Checking arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.8 compilers: Unknown arg --program-suffix=-4.8 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-libmudflap compilers: Unknown arg --disable-libmudflap compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.2 compilers: Unknown arg 4.8.2 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 4.8.2-19ubuntu1) compilers: Unknown arg 4.8.2-19ubuntu1) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-8RbPfA/config.compilers/conftest compilers: Unknown arg /tmp/petsc-8RbPfA/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. compilers: Checking arg /tmp/petsc-8RbPfA/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-8RbPfA/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:373) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:373) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/include/c++/4.8/random:35:0, from /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:4: /usr/include/c++/4.8/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:10:30: error: expected ‘;’ before ‘rd’ std::random_device rd; ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:11:24: error: expected ‘;’ before ‘mt’ std::mt19937 mt(rd()); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:36: error: expected ‘;’ before ‘double’ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.8/random:35:0, from /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:4: /usr/include/c++/4.8/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:10:30: error: expected ‘;’ before ‘rd’ std::random_device rd; ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:11:24: error: expected ‘;’ before ‘mt’ std::mt19937 mt(rd()); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:36: error: expected ‘;’ before ‘double’ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:571) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:571) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:630) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:630) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:667) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:667) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.o: In function `main': conftest.F:(.text+0x20): undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:677) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:677) Determine if Fortran handles preprocessing properly Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:698) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:698) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -DTesting /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:715) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:715) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: gfortran -V Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: Driving: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -l gfortran -l m -shared-libgcc -specs=/usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec Using built-in specs. Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec rename spec lib to liborig COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-8RbPfA/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O' '-L/usr/lib/gcc/x86_64-linux-gnu/4.8' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' '-specs=/usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-8RbPfA/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/petsc-8RbPfA/config.compilers/conftest.o -rpath /usr/lib/gcc/x86_64-linux-gnu/4.8 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o Popping language FC compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-8RbPfA/config.compilers/conftest compilers: Unknown arg /tmp/petsc-8RbPfA/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -Wno-unused-variable compilers: Unknown arg -Wno-unused-variable compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg /tmp/petsc-8RbPfA/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-8RbPfA/config.compilers/conftest.o compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec compilers: Unknown arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Checking arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.8 compilers: Unknown arg --program-suffix=-4.8 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-libmudflap compilers: Unknown arg --disable-libmudflap compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.2 compilers: Unknown arg 4.8.2 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 4.8.2-19ubuntu1) compilers: Unknown arg 4.8.2-19ubuntu1) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-8RbPfA/config.compilers/conftest compilers: Unknown arg /tmp/petsc-8RbPfA/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. compilers: Checking arg /tmp/petsc-8RbPfA/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-8RbPfA/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gcc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: g++ -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:1061) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1061) Check that Fortran can be linked against C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/cxxobj.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s /tmp/petsc-8RbPfA/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:1096) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1096) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:1109) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1109) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.F: In function ‘main’: /tmp/petsc-8RbPfA/config.compilers/conftest.F:4:0: warning: ‘carray.dim[0].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized] Type(C_Ptr),Dimension(:),Pointer :: CArray ^ /tmp/petsc-8RbPfA/config.compilers/conftest.F:9:0: warning: ‘carray.dim[0].lbound’ may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-8RbPfA/config.compilers/conftest.F:4:0: note: ‘carray.dim[0].lbound’ was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ /tmp/petsc-8RbPfA/config.compilers/conftest.F:9:0: warning: ‘carray.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-8RbPfA/config.compilers/conftest.F:4:0: note: ‘carray.offset’ was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:1129) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1129) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); abort(); } return; } Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/fooobj.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.compilers/conftest Executing: /tmp/petsc-8RbPfA/config.compilers/conftest stdout: arrays [0x7fff754967f0 0x7fff754967f0 0x7fff754967f0] arrays [0x7fff754967a0 0x7fff75496750 0x7fff754967a0] pointers do not match! [0x7f0262204740 0x7fff754967f0] [0x7fffffff] ERROR while running executable: Could not execute "/tmp/petsc-8RbPfA/config.compilers/conftest": arrays [0x7fff754967f0 0x7fff754967f0 0x7fff754967f0] arrays [0x7fff754967a0 0x7fff75496750 0x7fff754967a0] pointers do not match! [0x7f0262204740 0x7fff754967f0] [0x7fffffff] Program received signal SIGABRT: Process abort signal. Backtrace for this error: #0 0x7F0261CE97D7 #1 0x7F0261CE9DDE #2 0x7F0261940FEF #3 0x7F0261940F79 #4 0x7F0261944387 #5 0x400B6B in f90ptrtest_ #6 0x400A64 in MAIN__ at conftest.F:? Aborted (core dumped) Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:1216) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1216) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.compilers/conftest -I/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/configtest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:1282) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1282) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -module /tmp/petsc-8RbPfA/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-module’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -module:/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-8RbPfA/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fmod=/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-fmod=/tmp/petsc-8RbPfA/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -J/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/lucasogura/petsc/config/BuildSystem/config/compilers.py:1413) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1413) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/lucasogura/petsc/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: gcc -c -o /tmp/petsc-8RbPfA/config.headers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 # 44 "/usr/include/string.h" 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 96 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 127 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 164 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 211 "/usr/include/string.h" 3 4 # 236 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 263 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 282 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 315 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 534 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 557 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 644 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 513 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 578 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 775 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 812 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 899 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 951 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 956 "/usr/include/stdlib.h" 2 3 4 # 968 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Executing: gcc -c -o /tmp/petsc-8RbPfA/config.headers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.headers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.headers/conftest Executing: /tmp/petsc-8RbPfA/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 5 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/stat.h" 1 3 4 # 37 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 38 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 103 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 __syscall_slong_t __glibc_reserved[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 106 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 209 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int stat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 238 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int fstatat (int __fd, const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 263 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int lstat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 284 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int chmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int fchmodat (int __fd, const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__ , __leaf__)); # 321 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int mkdir (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mknod (const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, const char *__path, const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, const struct timespec __times[2]) __attribute__ ((__nothrow__ , __leaf__)); # 399 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))); # 442 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __xmknod (int __ver, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 5))); # 534 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 6 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: gcc -c -o /tmp/petsc-8RbPfA/config.headers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 26 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 28 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 55 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 71 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.headers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 26 "/usr/include/math.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_val.h" 1 3 4 # 33 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_valf.h" 1 3 4 # 35 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_vall.h" 1 3 4 # 36 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/inf.h" 1 3 4 # 39 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/nan.h" 1 3 4 # 42 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 3 4 typedef float float_t; typedef double double_t; # 46 "/usr/include/math.h" 2 3 4 # 69 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); # 371 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/math.h" 2 3 4 # 88 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); # 371 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); # 89 "/usr/include/math.h" 2 3 4 # 132 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); # 371 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); # 133 "/usr/include/math.h" 2 3 4 # 148 "/usr/include/math.h" 3 4 extern int signgam; # 189 "/usr/include/math.h" 3 4 enum { FP_NAN = 0, FP_INFINITE = 1, FP_ZERO = 2, FP_SUBNORMAL = 3, FP_NORMAL = 4 }; # 301 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 326 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 488 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_MATH_H" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.headers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 38 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 147 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 162 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 272 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 299 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 345 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 346 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 379 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 22 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef int wchar_t; # 24 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 29 "/usr/include/stdio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 34 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 36 "/usr/include/stdio.h" 2 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 74 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 31 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 82 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 32 "/usr/include/libio.h" 2 3 4 # 49 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 50 "/usr/include/libio.h" 2 3 4 # 144 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 154 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 177 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 245 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 293 "/usr/include/libio.h" 3 4 __off64_t _offset; # 302 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 338 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 390 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 434 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 464 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 75 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 90 "/usr/include/stdio.h" 3 4 typedef __off_t off_t; # 102 "/usr/include/stdio.h" 3 4 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 164 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdio_lim.h" 1 3 4 # 165 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (const char *__filename) __attribute__ ((__nothrow__ , __leaf__)); extern int rename (const char *__old, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern int renameat (int __oldfd, const char *__old, int __newfd, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern FILE *tmpfile (void) ; # 209 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; # 227 "/usr/include/stdio.h" 3 4 extern char *tempnam (const char *__dir, const char *__pfx) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 252 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 266 "/usr/include/stdio.h" 3 4 extern FILE *fopen (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; # 295 "/usr/include/stdio.h" 3 4 # 306 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; # 319 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int fprintf (FILE *__restrict __stream, const char *__restrict __format, ...); extern int printf (const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 412 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) ; extern int scanf (const char *__restrict __format, ...) ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__ , __leaf__)); # 443 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__ , __leaf__)) ; # 463 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 494 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 522 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 550 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 561 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 594 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 638 "/usr/include/stdio.h" 3 4 extern char *gets (char *__s) __attribute__ ((__deprecated__)); # 665 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (const char *__restrict __s, FILE *__restrict __stream); extern int puts (const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 737 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 773 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 792 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, const fpos_t *__pos); # 815 "/usr/include/stdio.h" 3 4 # 824 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void perror (const char *__s); # 1 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern const char *const sys_errlist[]; # 854 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; # 873 "/usr/include/stdio.h" 3 4 extern FILE *popen (const char *__command, const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 913 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); # 943 "/usr/include/stdio.h" 3 4 # 25 "/usr/include/malloc.h" 2 3 4 # 35 "/usr/include/malloc.h" 3 4 extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *pvalloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__ , __leaf__)); # 121 "/usr/include/malloc.h" 3 4 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__ , __leaf__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void malloc_stats (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_info (int __options, FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern void *malloc_get_state (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void (*volatile __malloc_initialize_hook) (void) __attribute__ ((__deprecated__)); extern void (*volatile __free_hook) (void *__ptr, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __malloc_hook)(size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __realloc_hook)(void *__ptr, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __memalign_hook)(size_t __alignment, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void (*volatile __after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 21 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/endian.h" 2 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 26 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/strings.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/strings.h" 2 3 4 # 39 "/usr/include/strings.h" 3 4 extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); # 76 "/usr/include/strings.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 104 "/usr/include/strings.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((const)); extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 128 "/usr/include/strings.h" 2 3 4 extern int strcasecmp_l (const char *__s1, const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (const char *__s1, const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 22 "/usr/include/sched.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 33 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 72 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 95 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 118 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 201 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 42 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 124 "/usr/include/sched.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/wait.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 30 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 102 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 33 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/signum.h" 1 3 4 # 58 "/usr/include/signal.h" 2 3 4 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 76 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 58 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; short int si_addr_lsb; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 153 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR, BUS_MCEERR_AR, BUS_MCEERR_AO }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 303 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef union pthread_attr_t pthread_attr_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 100 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 4 # 127 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); # 167 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 189 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 209 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 245 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 246 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 303 "/usr/include/signal.h" 3 4 extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 327 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 121 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 333 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 343 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 49 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 350 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 92 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 353 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 387 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 388 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 389 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 36 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 77 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 78 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 102 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t wait (__WAIT_STATUS __stat_loc); # 125 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); typedef __id_t id_t; # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 # 136 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 513 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 578 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 775 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 812 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 899 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 951 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 956 "/usr/include/stdlib.h" 2 3 4 # 968 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 21 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 23 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 28 "/usr/include/sched.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 33 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 72 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 95 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 118 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 201 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 42 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 124 "/usr/include/sched.h" 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 28 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 125 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 166 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 201 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 239 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 282 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 440 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 505 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 517 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 551 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 691 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 703 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 744 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 817 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 899 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 1011 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1055 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1122 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1156 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); # 1170 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 25 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 31 "/usr/include/setjmp.h" 2 3 4 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; # 102 "/usr/include/setjmp.h" 3 4 extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 112 "/usr/include/setjmp.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/utsname.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 48 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 81 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 25 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/limits.h" 2 3 4 # 143 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 38 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 161 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 144 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 148 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 2 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 25 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 1 3 4 # 35 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 61 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 1 3 4 # 341 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 3 4 # 415 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 3 4 # 61 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 2 3 4 # 36 "/usr/include/fcntl.h" 2 3 4 typedef __mode_t mode_t; typedef __off_t off_t; # 60 "/usr/include/fcntl.h" 3 4 typedef __pid_t pid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 68 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 __syscall_slong_t __glibc_reserved[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 69 "/usr/include/fcntl.h" 2 3 4 # 137 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 146 "/usr/include/fcntl.h" 3 4 extern int open (const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 170 "/usr/include/fcntl.h" 3 4 extern int openat (int __fd, const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 192 "/usr/include/fcntl.h" 3 4 extern int creat (const char *__file, mode_t __mode) __attribute__ ((__nonnull__ (1))); # 221 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, off_t __len); # 238 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, off_t __offset, off_t __len, int __advise) __attribute__ ((__nothrow__ , __leaf__)); # 260 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, off_t __offset, off_t __len); # 282 "/usr/include/fcntl.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 # 44 "/usr/include/string.h" 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 96 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 127 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 164 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 211 "/usr/include/string.h" 3 4 # 236 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 263 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 282 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 315 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 534 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 557 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 644 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/times.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 29 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 25 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 25 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/pwd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/pwd.h" 2 3 4 # 72 "/usr/include/pwd.h" 3 4 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); # 94 "/usr/include/pwd.h" 3 4 extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (const char *__name); # 139 "/usr/include/pwd.h" 3 4 extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 163 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 183 "/usr/include/pwd.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/float.h" 1 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/param.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/param.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 143 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 38 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 161 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 144 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 148 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed/limits.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 30 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 102 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 33 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; # 57 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/signum.h" 1 3 4 # 58 "/usr/include/signal.h" 2 3 4 # 75 "/usr/include/signal.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 76 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 58 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; short int si_addr_lsb; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 153 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR, BUS_MCEERR_AR, BUS_MCEERR_AO }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 307 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 100 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 4 # 127 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); # 167 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 189 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 209 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 245 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 246 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 303 "/usr/include/signal.h" 3 4 extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 327 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 121 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 333 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 343 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 49 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 350 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 92 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 353 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 388 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 389 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 29 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/param.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/param.h" 3 4 # 1 "/usr/include/linux/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 1 3 4 # 1 "/usr/include/asm-generic/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 2 3 4 # 5 "/usr/include/linux/param.h" 2 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/param.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 25 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 22 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 200 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 38 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 147 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 162 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 272 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 299 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 345 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 346 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 379 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 112 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 38 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135 }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; # 209 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 237 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 374 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 386 "/usr/include/netinet/in.h" 2 3 4 # 501 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 628 "/usr/include/netinet/in.h" 3 4 # 28 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/rpc/netdb.h" 1 3 4 # 42 "/usr/include/rpc/netdb.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 43 "/usr/include/rpc/netdb.h" 2 3 4 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__ , __leaf__)); extern void endrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbyname (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbyname_r (const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); # 33 "/usr/include/netdb.h" 2 3 4 # 42 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 3 4 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 43 "/usr/include/netdb.h" 2 3 4 # 53 "/usr/include/netdb.h" 3 4 extern int *__h_errno_location (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 92 "/usr/include/netdb.h" 3 4 extern void herror (const char *__str) __attribute__ ((__nothrow__ , __leaf__)); extern const char *hstrerror (int __err_num) __attribute__ ((__nothrow__ , __leaf__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (const char *__name); # 155 "/usr/include/netdb.h" 3 4 extern struct hostent *gethostbyname2 (const char *__name, int __af); # 167 "/usr/include/netdb.h" 3 4 extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); # 198 "/usr/include/netdb.h" 3 4 extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (const char *__name); # 237 "/usr/include/netdb.h" 3 4 extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (const char *__name, const char *__proto); extern struct servent *getservbyport (int __port, const char *__proto); # 308 "/usr/include/netdb.h" 3 4 extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (const char *__restrict __name, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (const char *__name); extern struct protoent *getprotobynumber (int __proto); # 374 "/usr/include/netdb.h" 3 4 extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); # 395 "/usr/include/netdb.h" 3 4 extern int setnetgrent (const char *__netgroup); extern void endnetgrent (void); # 412 "/usr/include/netdb.h" 3 4 extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); # 423 "/usr/include/netdb.h" 3 4 extern int innetgr (const char *__netgroup, const char *__host, const char *__user, const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); # 451 "/usr/include/netdb.h" 3 4 extern int rcmd (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p); # 463 "/usr/include/netdb.h" 3 4 extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 479 "/usr/include/netdb.h" 3 4 extern int rexec (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p); # 491 "/usr/include/netdb.h" 3 4 extern int rexec_af (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 505 "/usr/include/netdb.h" 3 4 extern int ruserok (const char *__rhost, int __suser, const char *__remuser, const char *__locuser); # 515 "/usr/include/netdb.h" 3 4 extern int ruserok_af (const char *__rhost, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); # 528 "/usr/include/netdb.h" 3 4 extern int iruserok (uint32_t __raddr, int __suser, const char *__remuser, const char *__locuser); # 539 "/usr/include/netdb.h" 3 4 extern int iruserok_af (const void *__raddr, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); # 551 "/usr/include/netdb.h" 3 4 extern int rresvport (int *__alport); # 560 "/usr/include/netdb.h" 3 4 extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 662 "/usr/include/netdb.h" 3 4 extern int getaddrinfo (const char *__restrict __name, const char *__restrict __service, const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__ , __leaf__)); extern const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__ , __leaf__)); extern int getnameinfo (const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, int __flags); # 713 "/usr/include/netdb.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 22 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/search.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/search.h" 2 3 4 # 44 "/usr/include/search.h" 3 4 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__ , __leaf__)); extern void remque (void *__elem) __attribute__ ((__nothrow__ , __leaf__)); typedef int (*__compar_fn_t) (const void *, const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; # 87 "/usr/include/search.h" 3 4 extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__ , __leaf__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__ , __leaf__)); extern void hdestroy (void) __attribute__ ((__nothrow__ , __leaf__)); # 118 "/usr/include/search.h" 3 4 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (const void *__key, void *const *__rootp, __compar_fn_t __compar); extern void *tdelete (const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (const void *__nodep, VISIT __value, int __level); extern void twalk (const void *__root, __action_fn_t __action); # 164 "/usr/include/search.h" 3 4 extern void *lfind (const void *__key, const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 26 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 28 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 55 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 71 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 33 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/user.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/user.h" 3 4 # 1 "/usr/include/unistd.h" 1 3 4 # 27 "/usr/include/unistd.h" 3 4 # 202 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 203 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 207 "/usr/include/unistd.h" 2 3 4 # 226 "/usr/include/unistd.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 227 "/usr/include/unistd.h" 2 3 4 # 255 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; # 267 "/usr/include/unistd.h" 3 4 typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 287 "/usr/include/unistd.h" 3 4 extern int access (const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 304 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 334 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 353 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, const void *__buf, size_t __n) ; # 376 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, const void *__buf, size_t __n, __off_t __offset) ; # 417 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 432 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 444 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 469 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 511 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 525 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 543 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (const char *__path, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (const char *__path, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (const char *__file, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (const char *__file, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 598 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 610 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 660 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 700 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; # 756 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, const char *__from, int __tofd, const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (const char *__from, int __tofd, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 871 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 57 "/usr/include/getopt.h" 3 4 extern char *optarg; # 71 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 150 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 872 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (const char *__prompt) __attribute__ ((__nonnull__ (1))); extern int fsync (int __fd); # 969 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 993 "/usr/include/unistd.h" 3 4 extern int truncate (const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1016 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1037 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1058 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1081 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1112 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1151 "/usr/include/unistd.h" 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/user.h" 2 3 4 struct user_fpregs_struct { unsigned short int cwd; unsigned short int swd; unsigned short int ftw; unsigned short int fop; __extension__ unsigned long long int rip; __extension__ unsigned long long int rdp; unsigned int mxcsr; unsigned int mxcr_mask; unsigned int st_space[32]; unsigned int xmm_space[64]; unsigned int padding[24]; }; struct user_regs_struct { __extension__ unsigned long long int r15; __extension__ unsigned long long int r14; __extension__ unsigned long long int r13; __extension__ unsigned long long int r12; __extension__ unsigned long long int rbp; __extension__ unsigned long long int rbx; __extension__ unsigned long long int r11; __extension__ unsigned long long int r10; __extension__ unsigned long long int r9; __extension__ unsigned long long int r8; __extension__ unsigned long long int rax; __extension__ unsigned long long int rcx; __extension__ unsigned long long int rdx; __extension__ unsigned long long int rsi; __extension__ unsigned long long int rdi; __extension__ unsigned long long int orig_rax; __extension__ unsigned long long int rip; __extension__ unsigned long long int cs; __extension__ unsigned long long int eflags; __extension__ unsigned long long int rsp; __extension__ unsigned long long int ss; __extension__ unsigned long long int fs_base; __extension__ unsigned long long int gs_base; __extension__ unsigned long long int ds; __extension__ unsigned long long int es; __extension__ unsigned long long int fs; __extension__ unsigned long long int gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; __extension__ unsigned long long int u_tsize; __extension__ unsigned long long int u_dsize; __extension__ unsigned long long int u_ssize; __extension__ unsigned long long int start_code; __extension__ unsigned long long int start_stack; __extension__ long long int signal; int reserved; __extension__ union { struct user_regs_struct* u_ar0; __extension__ unsigned long long int __u_ar0_word; }; __extension__ union { struct user_fpregs_struct* u_fpstate; __extension__ unsigned long long int __u_fpstate_word; }; __extension__ unsigned long long int magic; char u_comm [32]; __extension__ unsigned long long int u_debugreg [8]; }; # 34 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 __extension__ typedef unsigned long long elf_greg_t; # 49 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 63 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; # 82 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/resource.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/resource.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 131 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 158 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 176 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 }; # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 180 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; __extension__ union { long int ru_maxrss; __syscall_slong_t __ru_maxrss_word; }; __extension__ union { long int ru_ixrss; __syscall_slong_t __ru_ixrss_word; }; __extension__ union { long int ru_idrss; __syscall_slong_t __ru_idrss_word; }; __extension__ union { long int ru_isrss; __syscall_slong_t __ru_isrss_word; }; __extension__ union { long int ru_minflt; __syscall_slong_t __ru_minflt_word; }; __extension__ union { long int ru_majflt; __syscall_slong_t __ru_majflt_word; }; __extension__ union { long int ru_nswap; __syscall_slong_t __ru_nswap_word; }; __extension__ union { long int ru_inblock; __syscall_slong_t __ru_inblock_word; }; __extension__ union { long int ru_oublock; __syscall_slong_t __ru_oublock_word; }; __extension__ union { long int ru_msgsnd; __syscall_slong_t __ru_msgsnd_word; }; __extension__ union { long int ru_msgrcv; __syscall_slong_t __ru_msgrcv_word; }; __extension__ union { long int ru_nsignals; __syscall_slong_t __ru_nsignals_word; }; __extension__ union { long int ru_nvcsw; __syscall_slong_t __ru_nvcsw_word; }; __extension__ union { long int ru_nivcsw; __syscall_slong_t __ru_nivcsw_word; }; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 328 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 typedef __id_t id_t; # 42 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 69 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 25 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/unistd.h" 2 3 4 # 202 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 203 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 207 "/usr/include/unistd.h" 2 3 4 # 217 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 218 "/usr/include/unistd.h" 2 3 4 typedef __ssize_t ssize_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 227 "/usr/include/unistd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 255 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 287 "/usr/include/unistd.h" 3 4 extern int access (const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 304 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 334 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 353 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, const void *__buf, size_t __n) ; # 376 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, const void *__buf, size_t __n, __off_t __offset) ; # 417 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 432 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 444 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 469 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 511 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 525 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 543 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (const char *__path, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (const char *__path, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (const char *__file, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (const char *__file, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 598 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 610 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 660 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 700 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; # 756 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, const char *__from, int __tofd, const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (const char *__from, int __tofd, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 871 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 57 "/usr/include/getopt.h" 3 4 extern char *optarg; # 71 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 150 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 872 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (const char *__prompt) __attribute__ ((__nonnull__ (1))); extern int fsync (int __fd); # 969 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 993 "/usr/include/unistd.h" 3 4 extern int truncate (const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1016 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1037 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1058 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1081 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1112 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1151 "/usr/include/unistd.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 21 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 200 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 38 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 147 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 162 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 272 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 299 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 345 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 346 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 379 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 112 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 38 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135 }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; # 209 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 237 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 374 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 386 "/usr/include/netinet/in.h" 2 3 4 # 501 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 628 "/usr/include/netinet/in.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: gcc -c -o /tmp/petsc-8RbPfA/config.headers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/home/lucasogura/petsc/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST checkMemcmp from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:109) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:109) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-8RbPfA/config.functions Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.functions/conftest Executing: /tmp/petsc-8RbPfA/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:133) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:133) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-8RbPfA/config.functions/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.functions/conftest.c:17:1: warning: implicit declaration of function ‘sysinfo’ [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:156) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:156) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vprintf’ [enabled by default] char vprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:163) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:163) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vfprintf’ [enabled by default] char vfprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VFPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:170) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:170) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status Checking for functions [vsnprintf] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vsnprintf’ [enabled by default] char vsnprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkNanosleep from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:214) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:214) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:190) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:190) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:200) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:200) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:6:5: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:206) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:206) Checks whether the variable argument list functionality is working Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/lucasogura/petsc/config/BuildSystem/config/functions.py:88) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:88) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time sysctlbyname stricmp] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ‘snprintf’ [enabled by default] char snprintf(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘bzero’ [enabled by default] char bzero(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:36:6: warning: conflicting types for built-in function ‘fork’ [enabled by default] char fork(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:48:6: warning: conflicting types for built-in function ‘strcasecmp’ [enabled by default] char strcasecmp(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:52:6: warning: conflicting types for built-in function ‘memmove’ [enabled by default] char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0x5a): warning: the `getwd' function is dangerous and should not be used. conftest.c:(.text+0x1e): undefined reference to `_sleep' conftest.c:(.text+0x50): undefined reference to `_getcwd' conftest.c:(.text+0x6e): undefined reference to `_lseek' conftest.c:(.text+0x82): undefined reference to `_access' conftest.c:(.text+0xd2): undefined reference to `_snprintf' conftest.c:(.text+0x104): undefined reference to `sbreak' conftest.c:(.text+0x14a): undefined reference to `_set_output_format' conftest.c:(.text+0x154): undefined reference to `PXFGETARG' conftest.c:(.text+0x1cc): undefined reference to `sysctlbyname' conftest.c:(.text+0x1d6): undefined reference to `stricmp' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:17:6: warning: conflicting types for built-in function ‘bzero’ [enabled by default] char bzero(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:26:6: warning: conflicting types for built-in function ‘fork’ [enabled by default] char fork(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘strcasecmp’ [enabled by default] char strcasecmp(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:23:6: warning: conflicting types for built-in function ‘memmove’ [enabled by default] char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_sleep' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’ [enabled by default] char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [getwd] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_lseek' collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_access' collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [sysctlbyname] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `stricmp' collect2: error: ld returned 1 exit status ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/home/lucasogura/petsc/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2stderr: /tmp/petsc-8RbPfA/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFeatureTestMacros from PETSc.utilities.featureTestMacros(/home/lucasogura/petsc/config/PETSc/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from PETSc.utilities.featureTestMacros(config/PETSc/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/lucasogura/petsc/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST check_siginfo_t from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-8RbPfA/config.types Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:13:11: warning: unused variable ‘a’ [-Wunused-variable] siginfo_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:13:1: error: unknown type name ‘__int64’ __int64 a;; ^ /tmp/petsc-8RbPfA/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.types/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.types/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.types/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.types/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.types/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.types/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.types/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-8RbPfA/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:150) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:150) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.types/conftest.F Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.types/conftest.F:3.16: d = dreal(3.0) 1 Error: Type of argument 'a' in call to 'dreal' at (1) should be COMPLEX(8), not REAL(4) Source: program main double precision d d = dreal(3.0) end Compile failed inside link Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:158) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:158) Checks for working const, and if not found defines it to empty string Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:30:9: warning: ‘t’ is used uninitialized in this function [-Wuninitialized] *t++ = 0; ^ /tmp/petsc-8RbPfA/config.types/conftest.c:46:25: warning: ‘b’ is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:214) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:214) If the machine is big endian, defines WORDS_BIGENDIAN Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:11:3: error: unknown type name ‘not’ not big endian ^ /tmp/petsc-8RbPfA/config.types/conftest.c:11:11: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘endian’ not big endian ^ Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:318) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:318) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: gcc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/home/lucasogura/petsc/config/BuildSystem/config/types.py:364) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:364) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/home/lucasogura/petsc/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/home/lucasogura/petsc/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available Executing: uname -s stdout: Linux ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_sin() { double x = 0,y; y = sin(x); ^ /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:8:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_floor() { double x = 0,y; y = floor(x); ^ /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:11:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_log10() { double x = 0,y; y = log10(x); ^ /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:14:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_pow() { double x = 0,y ; y = pow(x, x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x9): undefined reference to `log10' collect2: error: ld returned 1 exit status Popping language C Checking for functions [sin floor log10 pow] in library ['m'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_sin() { double x = 0,y; y = sin(x); ^ /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:8:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_floor() { double x = 0,y; y = floor(x); ^ /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:11:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_log10() { double x = 0,y; y = log10(x); ^ /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:14:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_pow() { double x = 0,y ; y = pow(x, x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Using libm for the math library ================================================================================ TEST checkMathErf from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_erf’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_erf() { double x = 0,y; y = erf(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_tgamma’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:5:44: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double x = 0,y; y = tgamma(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkCompression from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:293) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:293) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x26): undefined reference to `compress' conftest.c:(.text+0x46): undefined reference to `uncompress' collect2: error: ld returned 1 exit status Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-8RbPfA/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-8RbPfA/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lz -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBZ" to "1" Popping language C Using libz for the compression library ================================================================================ TEST checkRealtime from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:314) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:314) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:330) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:330) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: gcc -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 22 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 28 "/usr/include/dlfcn.h" 2 3 4 # 52 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 82 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 188 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/home/lucasogura/petsc/config/PETSc/utilities/missing.py:39) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:39) Checks for limits All intermediate test results are stored in /tmp/petsc-8RbPfA/PETSc.utilities.missing Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/lucasogura/petsc/config/PETSc/utilities/missing.py:49) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:49) Checks if u_short is undefined Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c:6:9: warning: unused variable ‘foo’ [-Wunused-variable] u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/home/lucasogura/petsc/config/PETSc/utilities/missing.py:55) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:55) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/home/lucasogura/petsc/config/PETSc/utilities/missing.py:75) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:75) Check for missing signals, and define MISSING_ if necessary Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/home/lucasogura/petsc/config/PETSc/utilities/missing.py:92) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:92) Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #define _GNU_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.cc:4:0: warning: "_GNU_SOURCE" redefined [enabled by default] #define _GNU_SOURCE ^ :0:0: note: this is the location of the previous definition Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #define _GNU_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/home/lucasogura/petsc/config/PETSc/utilities/missing.py:117) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:117) Executing: gcc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #define _GNU_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.cc:4:0: warning: "_GNU_SOURCE" redefined [enabled by default] #define _GNU_SOURCE ^ :0:0: note: this is the location of the previous definition Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #define _GNU_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.missing/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/lucasogura/petsc/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: gfortran -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for functions [get_command_argument_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `get_command_argument_' collect2: error: ld returned 1 exit status Popping language C Checking for functions [getarg_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: gcc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `getarg_' collect2: error: ld returned 1 exit status Popping language C Checking for functions [ipxfargc_] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [iargc_] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `iargc_' collect2: error: ld returned 1 exit status Checking for functions [GETARG@16] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.functions/conftest.c:13:12: error: stray ‘@’ in program char GETARG@16(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:13:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before numeric constant char GETARG@16(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.functions/conftest.c:21:27: error: missing ')' after "defined" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:21:28: error: missing binary operator before token "16" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:24:7: error: stray ‘@’ in program GETARG@16(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:24:1: error: ‘GETARG’ undeclared (first use in this function) GETARG@16(); ^ /tmp/petsc-8RbPfA/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-8RbPfA/config.functions/conftest.c:24:8: error: expected ‘;’ before numeric constant GETARG@16(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) GETARG@16_will_always_fail_with_ENOSYS(); #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: gcc -c -o /tmp/petsc-8RbPfA/config.functions/conftest.o -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-8RbPfA/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Defined "HAVE__GFORTRAN_IARGC" to "1" Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C ================================================================================ TEST configureMake from config.packages.make(/home/lucasogura/petsc/config/BuildSystem/config/packages/make.py:60) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:60) Check for user specified make - or gmake, make Checking for program /usr/local/sbin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/sbin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /sbin/gmake...not found Checking for program /bin/gmake...not found Checking for program /usr/games/gmake...not found Checking for program /usr/local/games/gmake...not found Checking for program /home/lucasogura/gmake...not found Checking for program /home/lucasogura/petsc/bin/win32fe/gmake...not found Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/home/lucasogura/petsc/config/BuildSystem/config/packages/make.py:78) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:78) Check for GNU make Checking for program /usr/local/sbin/strings...not found Checking for program /usr/local/bin/strings...not found Checking for program /usr/sbin/strings...not found Checking for program /usr/bin/strings...found Executing: /usr/bin/strings /usr/bin/make stdout: /lib64/ld-linux-x86-64.so.2 kfUa libc.so.6 fflush strcpy __rawmemchr __printf_chk fnmatch readdir _IO_putc setlocale fopen strsignal strncmp optind strrchr wait pipe __strdup dcgettext closedir sigprocmask __stack_chk_fail __lxstat unlink realloc abort stdin _exit getpid kill __assert_fail mkstemp strtod strtol feof getloadavg fgets getpwnam calloc strlen sigemptyset memset glob strstr __errno_location chdir memcmp dup2 __fprintf_chk sigaddset ctime putenv stdout fputs lseek memcpy fclose malloc remove __strncpy_chk opendir __ctype_b_loc getenv sscanf optarg stderr alarm getlogin readlink setrlimit getopt_long execvp __fxstat __realpath_chk getcwd fwrite fread gettimeofday sigaction clock_gettime waitpid localtime strchr vfork __vfprintf_chk fdopen qsort __strcpy_chk __ctype_tolower_loc setvbuf fcntl __sprintf_chk bsd_signal __xstat getrlimit memmove bindtextdomain opterr strcmp strerror __libc_start_main ferror stpcpy globfree __environ __cxa_atexit __gmon_start__ GLIBC_2.3 GLIBC_2.14 GLIBC_2.4 GLIBC_2.17 GLIBC_2.3.4 GLIBC_2.2.5 5ba" %da" %ba" %Za" %Ra" %Ja" %Ba" %:a" %2a" %*a" %"a" %z`" %r`" %j`" %b`" %Z`" %R`" %J`" %B`" %:`" %2`" %*`" %"`" %z_" %r_" %j_" %b_" %Z_" %R_" %J_" %B_" %:_" %2_" %*_" %"_" %z^" %r^" %j^" %b^" %Z^" %R^" %J^" %B^" %:^" %2^" %*^" %"^" AWAVI AUATSH $<=u ;/t) =ij" GmXXXXXXH =A`" =1`" =cY" =\Y" %ZX" =~W" =I]" t}E1 |$ = =qP" =p=" \$@H AVAUATI []A\A]A^ ffff. ATU1 []A\ ffffff. AVAUI ATSH tK<[t,~m<\ t"<[L dH3<%( [A\A]A^A_] AWAVAUATSH t$" D$hE1 D$hL D$hL [A\A]A^A_] AWAVAUATUH ([]A\A]A^A_ tAH9 \uBH D;d$ D9d$ +uWA U0E9 @u4H ffff. ATUSH []A\A] t3US fffff. ubUSH fffff. AUATUSH ]A\A]A^ []A\A]1 -!0" ffffff. fffff. fffff. AWAVAUATUSH 8[]A\A]A^A_ -a/" []A\A]A^A_ t$ f t$ I l$ f AUATUSH t$H;- []A\A] t!L;%]," D$ht AUATSH t{H9 [A\A]] AUATSH [A\A]] AUATSH [A\A]] ffffff. AVAUATUSH L9l$ []A\A]A^A_ L9l$ L9l$ G00e@ G(0`@ ffffff. []A\ ffff. ATSH %,," [A\] fff. AWAVAUATI [A\A]A^A_] {uJA =`$" 5S&" []A\A] []A\A] []A\A] ffffff. AWAVAUATUH C(@t+ C(u~H ([]A\A]A^A_ tkUSH ffffff. fffff. tV<.u-f AUATI uHH;-i []A\A] []A\A] AWAVAUATUH D$ H K@I;L$@v L$@ []A\A]A^A_ fffff. AWAVAUA ATUSH H;-U []A\A]A^A_ []A\A]A^A_ ffffff. AWAVAUI ATUSH D$(H |$(H 8[]A\A]A^A_ AVAUATUSH []A\A]A^A_ |$(H D$81 |$8dH3<%( D$H1 \$0H \$8H t$@H |$ H |$PH D$HdH3 P[]A\ AWAVAUI ATUSH H9D$ []A\A]A^A_ ATUSH []A\ fffff. ATE1 []A\ AWAVAUATUH ]A\A]A^A_ AUATUH ]A\A] ffffff. AWAVAUATI ]A\A]A^A_ ffffff. ATUH []A\ fffff. AWAVAUI ATSH @ []A\ tM~i@ ?t6@ $uAA {tWA <:t+<=t t2H; ffffff. AWAVA ATE1 [A\A]A^A_] ffffff. ATUSH tU! T$8L l$(H |$@H l$(H l$0H D$0H t$pt D$ L t$(E D$ H T$ H t$(H 5b;! t$ H |$0L D$8L T$(A G+tsM G(L9 |$0H D$0H t$ I G*f% |$@D D$xH |$8L \u H D$XH D$`A 9D$t \$PE D$ H |$(L l$xH D$0H |$(L l$xH |$(L l$xH |$@H |$(H |$@H D$(H L$8H D$@H AWAVAUATUH D$8H d$8H -*.! D$ H []A\A]A^A_ []A\A]A^A_ D$0t fff. ATE1 %u-! []A\ []A\ -w)! []A\ ATUSH \$0H \$(H |$ H \$ H D$8H D$HH D$HH T$PH []A\ ATUSH T$`H t$XH T$`H t$XH []A\ tK[H ]A\A AWAVAUATA T$8H t$0E1 []A\A]A^A_ t$0L |$8I t$0I t$8K t$ H |$(H D$ H \$(H t$(H |$0A \$ H D$ H D$0H t$ H |$8L =Q ! =/ ! l$ H D$(L l$ 1 \$8H D$ H fff. AUATUH H(Hc @t/H []A\A] []A\A] ATUH H;D$ []A\A]A^A_ H;D$ AWAVAUATUSH D$8M t$01 t$LH Dt$LH D$ M t$ L t$0D T$ E l$?L t$0I N I9 V u" t$0I D$ L D$ M D$ H ET$ X[]A\A]A^A_ X[]A\A]A^A_ X[]A\A]A^A_ D$(1 []A\A]A^A_ D$(1 D$ 1 AWAVAUATUSH []A\A]A^A_ I;EH fffff. fffff. ffff. fffff. fffff. AUATI ,$H9- []A\A] []A\A] ffff. AVE1 AUATUSH HcD$ []A\A]A^A_ []A\A]A^A_ AWAVAUATUSH D$ L |$ M []A\A]A^A_ []A\A]A^A_ AUATUH []A\A]A^ AWAVI AUATUL T$,D T$ L T$ M t$(L D$,A 8[]A\A]A^A_ AWAVI AUATSH [A\A]A^A_] AWAVAUE1 ATSH [A\A]A^A_] AUATUS uB[]A\A]A^ AWAVAUATI t%H; []A\A]A^A_ trD;C []A\A]A^A_ fff. ATLc [A\] fffff. fff. AWE1 AVE1 ATU1 ([]A\A]A^A_ fffff. AWAVAUI ATUSH []A\A]A^A_ AUATUH []A\A] t&<$u []A\A] []A\ ffffff. t$(H t$ H |$ L L;=2 X[]A\A]A^A_ w_H []A\A]A^A_ AWAVAUATUSH L9<$v}M H[]A\A]A^A_ ffffff. fffff. AWAVAUATUSH t H; []A\A]A^A_ []A\A]A^A_ fffff. AWAVAUI ATUSH |$@A |$@H |$@H l$@I D$HL |$@I []A\A]A^A_ |$@H AWAVI AUATI [A\A]A^A_] 4$E1 AVAUATU t.H9 []A\A]A^ @t+H []A\A]A^ U0fA u8E1 fffff. AVAUI ATSH <$=u <$=u dH3<%( [A\A]A^] T$ H D$*H 0[]A\ AUATUS L$(H D$ H T$ H []A\A]A^A_ T$ L T$0H l$(I AWAVAUATUSH ([]A\A]A^A_ ([]A\A]A^A_ ffffff. tr9r(rOAUATUSH []A\A] []A\A] fffff. ATUH ATE1 []A\A] []A\A] []A\A]A^ AWE1 AVE1 ATUSH tKH;5 t2I9 []A\A]A^A_ ffff. AVAUI ATUH []A\A]A^A_ H;5Q []A\A]A^A_ []A\ fff. []A\A] fff. ffff. H;=q D$ A\ fff. []A\ fffff. H;=1 []A\A] ATUSH []A\A] t`I9 s+f. []A\ l$ L t$(L |$0H touch: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES $(MAKE) ${MAKE} kill # commands to execute (built-in): (from `%s', line %lu): %.*s ARFLAGS CHECKOUT,v COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi CWEAVE cweave CTANGLE ctangle rm -f LINK.o COMPILE.c LINK.c COMPILE.cc COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t COMPILE.f LINK.f COMPILE.F LINK.F COMPILE.r LINK.r COMPILE.def COMPILE.mod COMPILE.p LINK.p LINK.s COMPILE.s LINK.S COMPILE.S PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F PREPROCESS.r LINT.c OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o .cc.o .C.o .cpp.o .f.o .p.o .F.o .r.o .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln .l.ln .y.c .l.c @$(RM) $@ $(LEX.l) $< > $@ .F.f .r.f .l.r .S.s $(PREPROCESS.S) $< > $@ .texinfo.info .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< $(CHECKOUT,v) RCS/%,v RCS/% SCCS/s.% $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) $(CC) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(COMPILE.c) $(OUTPUT_OPTION) $< $(COMPILE.cc) $(OUTPUT_OPTION) $< $(COMPILE.C) $(OUTPUT_OPTION) $< $(COMPILE.cpp) $(OUTPUT_OPTION) $< $(COMPILE.f) $(OUTPUT_OPTION) $< $(COMPILE.p) $(OUTPUT_OPTION) $< $(COMPILE.F) $(OUTPUT_OPTION) $< $(COMPILE.r) $(OUTPUT_OPTION) $< $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c $(YACC.y) $< mv -f y.tab.c $@ $(PREPROCESS.F) $(OUTPUT_OPTION) $< $(PREPROCESS.r) $(OUTPUT_OPTION) $< $(LEX.l) $< > $@ mv -f lex.yy.r $@ $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< # Directories # %s: could not be stat'd. files, impossibilities so far. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): impossibilities in %lu directories. unterminated variable reference warning: undefined variable `%.*s' Recursive variable `%s' references itself (eventually) file.c *name != '\0' .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d Current time # Not a target: %s:%s | %s # Command-line target. # Also makes: # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Successfully updated. question_flag # Failed to be updated. # Files # files hash-table stats: Commands were specified for file `%s' at %s:%lu, Commands for file `%s' were found by implicit rule search, but `%s' is now considered the same file as `%s'. Commands for `%s' will be ignored in favor of those for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... %s: Timestamp out of range; substituting %s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Modification time never checked. # Commands currently running (THIS IS A BUG). # Dependencies commands running (THIS IS A BUG). # Needs to be updated (-q is set). # Invalid value in `update_status' member! print_file enter_file lookup_file basename addprefix undefined default environment environment override command line automatic %s:%lu: recursive simple filter %s: '%s' abspath addsuffix notdir filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard wordlist words origin foreach call warning value eval Internal error: func_error: '%s' Cleaning up temporary batch file %s insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 unterminated call to function `%s': missing `%c' Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible implicit prerequisite `%s'. Rejecting impossible rule prerequisite `%s'. Trying implicit prerequisite `%s'. Trying rule prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child 0x%08lx (%s) but no tokens left! Released token for child 0x%08lx (%s). %s (line %d) Bad shell context (!unixy && !batch_mode_shell) *** Waiting for unfinished jobs.... Live child 0x%08lx (%s) PID %ld %s Reaping losing child 0x%08lx PID %ld %s Reaping winning child 0x%08lx PID %ld %s Cleaning up temp batch file %s Removing child 0x%08lx PID %ld%s from chain. cannot enforce load limits on this operating system Estimated system load = %f (actual = %f) (max requested = %f) Putting child 0x%08lx (%s) PID %ld%s on the chain. f->command_state == cs_finished Need a job token; we %shave children INTERNAL: no children as we go to sleep on read Obtained token for child 0x%08lx (%s). write jobserver [%s] Error %d (ignored) *** [%s] Error %d (core dumped) *** [%s] %s%s job.c ap <= end \$\{%u\} %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(IFS) /bin/sh vfork (remote) remote_status wait .DELETE_ON_ERROR cannot enforce load limit: getloadavg don't Duplicate the job FD read jobs pipe Read returned EBADF. break case continue exec exit login logout read readonly shift switch test trap umask while construct_command_argv_internal start_waiting_job ?empty string invalid as file name INTERNAL: Exiting with %u jobserver tokens (should be 0)! INTERNAL: Exiting with %u jobserver tokens available; should be %u! %sGNU Make %s %sCopyright (C) 2006 Free Software Foundation, Inc. %sThis is free software; see the source for copying conditions. %sThere is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A %sPARTICULAR PURPOSE. %sThis program built for %s (%s) # Make data base, printed on %s # Finished Make data base on %s %s: Entering an unknown directory %s: Leaving an unknown directory %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `-%c' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s (%s) Report bugs to target-specific order-only second-expansion else-if unknown debug level specification `%s' Makefile from standard input specified twice. internal error: multiple --jobserver-fds options internal error: invalid --jobserver-fds string `%s' warning: -jN forced in submake: disabling jobserver mode. warning: jobserver unavailable: using -j1. Add `+' to parent make rule. Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. .DEFAULT_GOAL contains more than one target No targets specified and no makefile found warning: Clock skew detected. Your build may be incomplete. Couldn't change back to original directory. -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from commands. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any commands; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no commands; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo commands. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. write MAKECMDGOALS MFLAGS MAKEFLAGS %sThis program built for %s %s: Entering directory `%s' %s: Leaving directory `%s' This program built for %s /tmp /usr/share/locale getcwd .VARIABLES .FEATURES archives check-symlink MAKE_RESTARTS MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR .DEFAULT .DEFAULT_GOAL TMPDIR fopen (temporary file) fwrite (temporary file) %d,%d dup jobserver creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' was not found chdir Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u main.c unlink (temporary file): No targets Updating goal targets.... quiet stop new-file assume-new assume-old max-load dry-run recon always-make basic debug environment-overrides help ignore-errors include-dir jobs jobserver-fds load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch version no-print-directory what-if warn-undefined-variables Options: $(-*-command-variables-*-) main %s: %s[%u]: %s:%lu: *** %s: *** %s[%u]: *** . Stop. virtual memory exhausted %s%s: %s write error: %s write error warning: NUL character seen; rest of line ignored Extraneous text after `endef' directive missing `endef', unterminated `define' Extraneous text after `%s' directive only one `else' per conditional prerequisites cannot be defined in command scripts mixed implicit and static pattern rules mixed implicit and normal rules target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding commands for target `%s' warning: ignoring old commands for target `%s' commands commence before first target (did you mean TAB instead of 8 spaces?) Malformed target-specific variable definition target pattern contains no `%%' define endef ifdef ifndef ifeq ifneq else endif extraneous `%s' .POSIX .SECONDEXPANSION $(HOME) HOME /usr/include .INCLUDE_DIRS invalid syntax in conditional extraneous `endef' empty variable name empty `override' directive invalid `override' directive unexport vpath -include sinclude missing rule before commands missing separator%s read.c *p2 != '\0' v != 0 missing target pattern multiple target patterns missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) GNUmakefile Makefile /usr/gnu/include /usr/local/include record_target_var eval lstat: readlink: $(strip $(.LIBPATTERNS)) %s/%s touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. remake.c Nothing to be done for `%s'. `%s' is up to date. /usr/lib/x86_64-linux-gnu /usr/lib /usr/local/lib %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s .LIBPATTERNS element `%s' is not a pattern Warning: File `%s' has modification time %.2g s in the future Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default commands for `%s'. Circular %s <- %s dependency dropped. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No commands for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. Commands of `%s' are being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 update_file_1 A(%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules wrong! %u != %u Y@strcache.c best->bytesfree > len %s # of strcache buffers: %d %s # of strings in strcache: %d %s strcache size: total = %d / max = %d / min = %d / avg = %d %s strcache free: total = %d / max = %d / min = %d / avg = %d add_string environment under -e (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) variable.c %s%s%s MAKE_VERSION MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) # Variables %s : pop_variable_scope current_variable_set_list->next != ((void *)0) # variable set hash-table stats: # Pattern-specific Variable Values # No pattern-specific variable values. # %u pattern-specific variable values x86_64-pc-linux-gnu 3.81 $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths # No `vpath' search paths. vpath %s %s%c # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %ld bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% ;*3$" .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el eval\ \"set\ x\;\ shift\;\ -c #;"*?[]&|<>(){}$`^~! /bin/sh Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/home/lucasogura/petsc/config/BuildSystem/config/packages/make.py:122) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:122) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 4 cores: using make_np = 4 Defined make macro "MAKE_NP" to "4" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:747) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:747) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Looking for MPI in directory starting with mpich Could not locate an existing copy of mpich: [] Downloading MPI =============================================================================== Trying to download http://www.mpich.org/static/downloads/3.1/mpich-3.1.tar.gz for MPI =============================================================================== Downloading http://www.mpich.org/static/downloads/3.1/mpich-3.1.tar.gz to /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_mpich-3.1.tar.gz Extracting /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_mpich-3.1.tar.gz Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages; chmod -R a+r mpich-3.1;find mpich-3.1 -type d -name "*" -exec chmod a+rx {} \; Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.1 Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.1 Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.1 Pushing language C All intermediate test results are stored in /tmp/petsc-8RbPfA/config.packages.MPI Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Executing: gfortran -v Popping language FC Executing: uname -s stdout: Linux Have to rebuild MPI, /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/args.petsc != /home/lucasogura/petsc/arch-linux2-c-opt/conf/MPI =============================================================================== Running configure on MPICH; this may take several minutes =============================================================================== Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1 && ./configure --prefix=/home/lucasogura/petsc/arch-linux2-c-opt MAKE=/usr/bin/make CC="gcc" CFLAGS=" -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O " CXX="g++" CXXFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC " FC="gfortran" FCFLAGS=" -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O " F77="gfortran" FFLAGS=" -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O " --enable-shared --enable-sharedlibs=gcc --with-device=ch3:sock --without-mpe --with-pm=hydra --enable-g=meminit --enable-fast stdout: Configuring MPICH version 3.1 with '--prefix=/home/lucasogura/petsc/arch-linux2-c-opt' 'MAKE=/usr/bin/make' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O ' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' '--enable-shared' '--enable-sharedlibs=gcc' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' Running on system: Linux lucasogura 3.13.0-30-generic #54-Ubuntu SMP Mon Jun 9 22:45:01 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for getpagesize... yes checking for getpagesize... (cached) yes configure: RUNNING PREREQ FOR ch3:sock configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/lucasogura/petsc/arch-linux2-c-opt' 'MAKE=/usr/bin/make' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -DNDEBUG -DNVALGRIND' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -DNDEBUG -DNVALGRIND' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' '--enable-shared' '--enable-sharedlibs=gcc' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... yes checking valgrind/valgrind.h presence... yes checking for valgrind/valgrind.h... yes checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... yes checking valgrind/helgrind.h presence... yes checking for valgrind/helgrind.h... yes checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... yes checking valgrind/drd.h presence... yes checking for valgrind/drd.h... yes checking whether the valgrind headers are broken or too old... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/lucasogura/petsc/arch-linux2-c-opt' --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/make' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -DNDEBUG -DNVALGRIND' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -DNDEBUG -DNVALGRIND' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' '--enable-shared' '--enable-sharedlibs=gcc' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines configure: ===== done with src/openpa configure ===== sourcing /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for multiple weak symbol support... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lquadmath checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 8 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking for perl... /usr/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... yes checking for C type matching Fortran real... float checking for C type matching Fortran double... double checking for C type matching Fortran integer... int checking for values of Fortran logicals... True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for gcc __asm__ and pentium cmpxchgl instruction... no checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes checking for gcc __asm__ and IA64 xchg4 instruction... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for qsort... yes checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes checking size of MPIR_Bsend_data_t... 96 checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking whether pthread_mutexattr_settype needs a declaration... no checking for thread local storage specifier... __thread checking for getpid... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking for sched_setaffinity... yes checking for sched_getaffinity... yes checking for bindprocessor... no checking for thread_policy_set... no checking whether cpu_set_t available... yes checking whether the CPU_SET and CPU_ZERO macros are defined... no configure: RUNNING CONFIGURE FOR F90 CODE checking whether ln -s works... yes checking for extension for Fortran 90 programs... f90 checking for the precision and range of reals... 6 , 37 checking for the precision and range of double precision... 15 , 307 checking for the range of integer... 9 checking for available integer kinds... 2 , 1, 4 , 2, 9 , 4, 18 , 8, checking for available integer ranges... { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... no checking uuid/uuid.h presence... no checking for uuid/uuid.h... no checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:sock checking for net/if.h... yes checking for netdb.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking for netinet/in.h... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock checking for strerror... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock/poll checking for poll... yes checking for assert.h... (cached) yes checking for errno.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for limits.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for netinet/tcp.h... (cached) yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for stdlib.h... (cached) yes checking for sys/param.h... (cached) yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for unistd.h... (cached) yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking for library containing socket... (cached) none required checking for library containing gethostbyname... (cached) none required checking whether socklen_t is defined (in sys/socket.h if present)... (cached) yes configure: RUNNING CONFIGURE FOR CH3U SOCK CODE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for time.h... (cached) yes checking for ctype.h... (cached) yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... (cached) yes checking for pid_t... (cached) yes checking for inet_pton... (cached) yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking whether we can use struct ifconf... yes configure: ===== configuring src/mpid/common/sock ===== configure: ===== done with src/mpid/common/sock configure ===== configure: ===== configuring src/mpi/romio ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/lucasogura/petsc/arch-linux2-c-opt' 'MAKE=/usr/bin/make' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -DNDEBUG -DNVALGRIND -O2' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -DNDEBUG -DNVALGRIND' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -O2' '--enable-shared' '--enable-sharedlibs=gcc' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... no checking for mawk... mawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... LINUX ROMIO home directory is /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long... yes checking size of long long... 8 checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for off_t... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking for mpix.h... no checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... (cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpif77 setting CFLAGS to -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -DNDEBUG -DNVALGRIND -O2 -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/lucasogura/petsc/arch-linux2-c-opt' 'MAKE=/usr/bin/make' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -DNDEBUG -DNVALGRIND -O2' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -DNDEBUG -DNVALGRIND' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -O2' '--enable-shared' '--enable-sharedlibs=gcc' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... no checking for mawk... mawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking whether /usr/bin/make supports nested variables... (cached) yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking for doxygen... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking for strings.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for netdb.h... (cached) yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for socket in -lsocket... no checking for gethostbyname in -lnsl... yes checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... no ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... (cached) 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking for strncasecmp... yes checking whether function strncasecmp is declared... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... no checking for windows.h... (cached) no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking for pthread_t... yes checking whether function sched_setaffinity is declared... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working _syscall3... no checking for KERRIGHED... no checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking numaif.h usability... no checking numaif.h presence... no checking for numaif.h... no checking for PCIACCESS... no checking for PCIUTILS... yes checking for pci_cleanup... yes checking for final PCIUTILS support... yes checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking X11/Xlib.h usability... no checking X11/Xlib.h presence... no checking for X11/Xlib.h... no checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... yes checking for xmlNewDoc... yes checking for final LIBXML2 support... yes checking for cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic custom xml_nolibxml linux linuxpci xml_libxml x86 checking components to build as plugins... checking available processor topology libraries... hwloc checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... meminit checking error checking... yes checking warnings... no checking profiling... yes checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking for FTB_Connect in -lftb... no checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/src/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 20 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 16 checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32 configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/binding/f90/mpif90model.h config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/include/mpichtimer.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f77/setbot.c config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/binding/f90/mpi_base.f90 config.status: creating src/binding/f90/mpi_constants.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90.sh config.status: creating src/env/mpif90.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/lucasogura/petsc/arch-linux2-c-opt' 'MAKE=/usr/bin/make' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O ' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ' '--enable-shared' '--enable-sharedlibs=gcc' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... no checking for mawk... mawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (ar) interface... ar checking for grep that handles long lines and -e... /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lpthread -lgfortran -lm -lquadmath checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands Configuration completed. =============================================================================== Running make on MPICH; this may take several minutes =============================================================================== Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1 && /usr/bin/make clean stdout: Making clean in /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' Making clean in /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' Making clean in src make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' Making clean in test make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o test -z "sanity.log test_primitives.log test_barriers.log test_queue.log" || rm -f sanity.log test_primitives.log test_barriers.log test_queue.log test -z "sanity.trs test_primitives.trs test_barriers.trs test_queue.trs" || rm -f sanity.trs test_primitives.trs test_barriers.trs test_queue.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' Making clean in src/mpi/romio make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' test -z "" || rm -f rm -rf .libs _libs rm -rf adio/ad_bg/.libs adio/ad_bg/_libs rm -rf adio/ad_bgl/.libs adio/ad_bgl/_libs rm -rf adio/ad_bglockless/.libs adio/ad_bglockless/_libs rm -rf adio/ad_gridftp/.libs adio/ad_gridftp/_libs rm -rf adio/ad_hfs/.libs adio/ad_hfs/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pfs/.libs adio/ad_pfs/_libs rm -rf adio/ad_piofs/.libs adio/ad_piofs/_libs rm -rf adio/ad_pvfs/.libs adio/ad_pvfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_sfs/.libs adio/ad_sfs/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/ad_zoidfs/.libs adio/ad_zoidfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/.libs mpi-io/glue/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la " || rm -f libromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_bg/*.o rm -f adio/ad_bg/*.lo rm -f adio/ad_bgl/*.o rm -f adio/ad_bgl/*.lo rm -f adio/ad_bglockless/*.o rm -f adio/ad_bglockless/*.lo rm -f adio/ad_gridftp/*.o rm -f adio/ad_gridftp/*.lo rm -f adio/ad_hfs/*.o rm -f adio/ad_hfs/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pfs/*.o rm -f adio/ad_pfs/*.lo rm -f adio/ad_piofs/*.o rm -f adio/ad_piofs/*.lo rm -f adio/ad_pvfs/*.o rm -f adio/ad_pvfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_sfs/*.o rm -f adio/ad_sfs/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/ad_zoidfs/*.o rm -f adio/ad_zoidfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/*.o rm -f mpi-io/glue/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' Making clean in src/pm/hydra make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' Making clean in ../../mpl make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' Making clean in tools/topo/hwloc/hwloc make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in src make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making clean in include make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs rm -rf pm/pmiserv/.libs pm/pmiserv/_libs rm -rf tools/bootstrap/external/.libs tools/bootstrap/external/_libs rm -rf tools/bootstrap/persist/.libs tools/bootstrap/persist/_libs rm -rf tools/bootstrap/src/.libs tools/bootstrap/src/_libs rm -rf tools/bootstrap/utils/.libs tools/bootstrap/utils/_libs rm -rf tools/ckpoint/.libs tools/ckpoint/_libs rm -rf tools/ckpoint/blcr/.libs tools/ckpoint/blcr/_libs rm -rf tools/debugger/.libs tools/debugger/_libs rm -rf tools/demux/.libs tools/demux/_libs rm -rf tools/ftb/.libs tools/ftb/_libs rm -rf tools/topo/.libs tools/topo/_libs rm -rf tools/topo/hwloc/.libs tools/topo/hwloc/_libs rm -rf ui/utils/.libs ui/utils/_libs rm -rf utils/alloc/.libs utils/alloc/_libs rm -rf utils/args/.libs utils/args/_libs rm -rf utils/dbg/.libs utils/dbg/_libs rm -rf utils/env/.libs utils/env/_libs rm -rf utils/launch/.libs utils/launch/_libs rm -rf utils/others/.libs utils/others/_libs rm -rf utils/signals/.libs utils/signals/_libs rm -rf utils/sock/.libs utils/sock/_libs rm -rf utils/string/.libs utils/string/_libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f pm/pmiserv/*.o rm -f pm/pmiserv/*.lo rm -f tools/bootstrap/external/*.o rm -f tools/bootstrap/external/*.lo rm -f tools/bootstrap/persist/*.o rm -f tools/bootstrap/persist/*.lo rm -f tools/bootstrap/src/*.o rm -f tools/bootstrap/src/*.lo rm -f tools/bootstrap/utils/*.o rm -f tools/bootstrap/utils/*.lo rm -f tools/ckpoint/*.o rm -f tools/ckpoint/*.lo rm -f tools/ckpoint/blcr/*.o rm -f tools/ckpoint/blcr/*.lo rm -f tools/debugger/*.o rm -f tools/debugger/*.lo rm -f tools/demux/*.o rm -f tools/demux/*.lo rm -f tools/ftb/*.o rm -f tools/ftb/*.lo rm -f tools/nameserver/*.o rm -f tools/topo/*.o rm -f tools/topo/*.lo rm -f tools/topo/hwloc/*.o rm -f tools/topo/hwloc/*.lo rm -f ui/mpich/*.o rm -f ui/utils/*.o rm -f ui/utils/*.lo rm -f utils/alloc/*.o rm -f utils/alloc/*.lo rm -f utils/args/*.o rm -f utils/args/*.lo rm -f utils/dbg/*.o rm -f utils/dbg/*.lo rm -f utils/env/*.o rm -f utils/env/*.lo rm -f utils/launch/*.o rm -f utils/launch/*.lo rm -f utils/others/*.o rm -f utils/others/*.lo rm -f utils/signals/*.o rm -f utils/signals/*.lo rm -f utils/sock/*.o rm -f utils/sock/*.lo rm -f utils/string/*.o rm -f utils/string/*.lo rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' Making clean in . make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' rm -f src/env/mpichversion src/env/mpivars test -z "src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod" || rm -f src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod test -z "lib/libmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la" || rm -f lib/libmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/f77/.libs src/binding/f77/_libs rm -rf src/binding/f90/.libs src/binding/f90/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/ib/.libs src/mpid/ch3/channels/nemesis/netmod/ib/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mx/.libs src/mpid/ch3/channels/nemesis/netmod/mx/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/newmad/.libs src/mpid/ch3/channels/nemesis/netmod/newmad/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/scif/.libs src/mpid/ch3/channels/nemesis/netmod/scif/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/common/datatype/.libs src/mpid/common/datatype/_libs rm -rf src/mpid/common/datatype/dataloop/.libs src/mpid/common/datatype/dataloop/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/sock/poll/.libs src/mpid/common/sock/poll/_libs rm -rf src/mpid/common/thread/.libs src/mpid/common/thread/_libs rm -rf src/mpid/pamid/src/.libs src/mpid/pamid/src/_libs rm -rf src/mpid/pamid/src/coll/.libs src/mpid/pamid/src/coll/_libs rm -rf src/mpid/pamid/src/coll/allgather/.libs src/mpid/pamid/src/coll/allgather/_libs rm -rf src/mpid/pamid/src/coll/allgatherv/.libs src/mpid/pamid/src/coll/allgatherv/_libs rm -rf src/mpid/pamid/src/coll/allreduce/.libs src/mpid/pamid/src/coll/allreduce/_libs rm -rf src/mpid/pamid/src/coll/alltoall/.libs src/mpid/pamid/src/coll/alltoall/_libs rm -rf src/mpid/pamid/src/coll/alltoallv/.libs src/mpid/pamid/src/coll/alltoallv/_libs rm -rf src/mpid/pamid/src/coll/alltoallw/.libs src/mpid/pamid/src/coll/alltoallw/_libs rm -rf src/mpid/pamid/src/coll/barrier/.libs src/mpid/pamid/src/coll/barrier/_libs rm -rf src/mpid/pamid/src/coll/bcast/.libs src/mpid/pamid/src/coll/bcast/_libs rm -rf src/mpid/pamid/src/coll/exscan/.libs src/mpid/pamid/src/coll/exscan/_libs rm -rf src/mpid/pamid/src/coll/gather/.libs src/mpid/pamid/src/coll/gather/_libs rm -rf src/mpid/pamid/src/coll/gatherv/.libs src/mpid/pamid/src/coll/gatherv/_libs rm -rf src/mpid/pamid/src/coll/ired_scat/.libs src/mpid/pamid/src/coll/ired_scat/_libs rm -rf src/mpid/pamid/src/coll/ired_scat_block/.libs src/mpid/pamid/src/coll/ired_scat_block/_libs rm -rf src/mpid/pamid/src/coll/reduce/.libs src/mpid/pamid/src/coll/reduce/_libs rm -rf src/mpid/pamid/src/coll/scan/.libs src/mpid/pamid/src/coll/scan/_libs rm -rf src/mpid/pamid/src/coll/scatter/.libs src/mpid/pamid/src/coll/scatter/_libs rm -rf src/mpid/pamid/src/coll/scatterv/.libs src/mpid/pamid/src/coll/scatterv/_libs rm -rf src/mpid/pamid/src/comm/.libs src/mpid/pamid/src/comm/_libs rm -rf src/mpid/pamid/src/dyntask/.libs src/mpid/pamid/src/dyntask/_libs rm -rf src/mpid/pamid/src/misc/.libs src/mpid/pamid/src/misc/_libs rm -rf src/mpid/pamid/src/mpix/.libs src/mpid/pamid/src/mpix/_libs rm -rf src/mpid/pamid/src/onesided/.libs src/mpid/pamid/src/onesided/_libs rm -rf src/mpid/pamid/src/pamix/.libs src/mpid/pamid/src/pamix/_libs rm -rf src/mpid/pamid/src/pt2pt/.libs src/mpid/pamid/src/pt2pt/_libs rm -rf src/mpid/pamid/src/pt2pt/persistent/.libs src/mpid/pamid/src/pt2pt/persistent/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/mpd/.libs src/nameserv/mpd/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pmi/pmi2/poe/.libs src/pmi/pmi2/poe/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/util/cvar/.libs src/util/cvar/_libs rm -rf src/util/dbg/.libs src/util/dbg/_libs rm -rf src/util/instrm/.libs src/util/instrm/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/msgs/.libs src/util/msgs/_libs rm -rf src/util/other/.libs src/util/other/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs rm -rf src/util/thread/.libs src/util/thread/_libs ( cd test && /usr/bin/make clean ) make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test' Making clean in mpi make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi' Making clean in util make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/util' rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/util' Making clean in attr make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/attr' Making clean in basic make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/basic' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/basic' Making clean in datatype make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count large_type large_type_sendrec lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms" || rm -f blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count large_type large_type_sendrec lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/datatype' Making clean in coll make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/coll' Making clean in comm make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_idup_mul comm_idup_overlap comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_idup_mul comm_idup_overlap comm_info rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/comm' Making clean in errhan make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "adderr commcall errfatal predef_eh" || rm -f adderr commcall errfatal predef_eh rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errhan' Making clean in group make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/group' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/group' Making clean in info make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoenv rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/info' Making clean in init make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/init' Making clean in pt2pt make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/pt2pt' Making clean in rma make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example req_example_shm win_info pscw_ordering mutex_bench mutex_bench_shared mutex_bench_shm rma-contig badrma nb_test" || rm -f allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example req_example_shm win_info pscw_ordering mutex_bench mutex_bench_shared mutex_bench_shm rma-contig badrma nb_test rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/rma' Making clean in topo make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/topo' Making clean in errors make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors' Making clean in attr make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "keyvalmis" || rm -f keyvalmis rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/attr' Making clean in coll make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "noalias rerr bcastlength reduce_local" || rm -f noalias rerr bcastlength reduce_local rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/coll' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/comm' Making clean in datatype make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "getcnterr" || rm -f getcnterr rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/datatype' Making clean in group make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/group' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "gerr" || rm -f gerr rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/group' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/pt2pt' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/rma' Making clean in topo make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartsmall" || rm -f cartsmall rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/topo' Making clean in basic make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/basic' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/basic' Making clean in faults make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/faults' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/faults' Making clean in io make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrret openerr" || rm -f fileerrret openerr rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/io' Making clean in f77 make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77' Making clean in io make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77/io' make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77' Making clean in f90 make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90' Making clean in io make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90/io' make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90' Making clean in cxx make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx' Making clean in io make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx/io' Making clean in errhan make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx/errhan' make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "badport unpub lookup_name" || rm -f badport unpub lookup_name rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/spawn' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors' Making clean in manual make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual' Making clean in mpi_t make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual/mpi_t' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual' test -z "summary.xml summary.tap test-port" || rm -f summary.xml summary.tap test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual' Making clean in perf make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/perf' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/perf' Making clean in mpi_t make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpi_t_str mpit_vars" || rm -f mpi_t_str mpit_vars rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/mpi_t' Making clean in impls make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls' Making clean in mpich make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich' Making clean in mpi_t make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "collparmt" || rm -f collparmt rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich/mpi_t' make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls' Making clean in io make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/io' Making clean in f77 make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77' Making clean in util make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/util' rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/util' Making clean in attr make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/attr' Making clean in datatype make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/datatype' Making clean in coll make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/coll' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf statusesf greqf mprobef" || rm -f allpairf statusesf greqf mprobef rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/pt2pt' Making clean in info make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/info' Making clean in init make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/init' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/comm' Making clean in topo make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/topo' Making clean in ext make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/ext' Making clean in profile make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f" || rm -f profile1f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/profile' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/spawn' Making clean in io make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/io' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/rma' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77' Making clean in f90 make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90' Making clean in util make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/util' rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/util' Making clean in timer make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/timer' Making clean in attr make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/attr' Making clean in coll make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/coll' Making clean in datatype make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/datatype' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf90 statusesf90 greqf90 mprobef90" || rm -f allpairf90 statusesf90 greqf90 mprobef90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/pt2pt' Making clean in info make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/info' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/comm' Making clean in topo make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/topo' Making clean in ext make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/ext' Making clean in init make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/init' Making clean in misc make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/misc' Making clean in f90types make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/f90types' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "createf90types" || rm -f createf90types rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/f90types' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/rma' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/spawn' Making clean in io make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/io' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90' Making clean in cxx make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx' Making clean in util make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/util' rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/util' Making clean in attr make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/attr' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/pt2pt' Making clean in init make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/init' Making clean in info make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/info' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/comm' Making clean in coll make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx" || rm -f arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/coll' Making clean in datatype make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "packsizex typecntsx typenamex typemiscx" || rm -f packsizex typecntsx typenamex typemiscx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/datatype' Making clean in errhan make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/errhan' Making clean in io make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/io' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/rma' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/spawn' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx' Making clean in threads make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads' Making clean in util make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/util' rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/util' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/pt2pt' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/comm' Making clean in init make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "initth" || rm -f initth rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/init' Making clean in mpi_t make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpit_threading" || rm -f mpit_threading rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/mpi_t' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/spawn' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "multirma" || rm -f multirma rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/rma' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads' Making clean in spawn make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/spawn' Making clean in ft make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/ft' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/ft' Making clean in . make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi' Making clean in commands make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/commands' Making clean in . make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test' rm -f /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpic++ test -z "" || rm -f test -z "" || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/f77/*.o rm -f src/binding/f77/*.lo rm -f src/binding/f90/*.o rm -f src/binding/f90/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/ib/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/ib/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/common/datatype/*.o rm -f src/mpid/common/datatype/*.lo rm -f src/mpid/common/datatype/dataloop/*.o rm -f src/mpid/common/datatype/dataloop/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/sock/poll/*.o rm -f src/mpid/common/sock/poll/*.lo rm -f src/mpid/common/thread/*.o rm -f src/mpid/common/thread/*.lo rm -f src/mpid/pamid/src/*.o rm -f src/mpid/pamid/src/*.lo rm -f src/mpid/pamid/src/coll/*.o rm -f src/mpid/pamid/src/coll/*.lo rm -f src/mpid/pamid/src/coll/allgather/*.o rm -f src/mpid/pamid/src/coll/allgather/*.lo rm -f src/mpid/pamid/src/coll/allgatherv/*.o rm -f src/mpid/pamid/src/coll/allgatherv/*.lo rm -f src/mpid/pamid/src/coll/allreduce/*.o rm -f src/mpid/pamid/src/coll/allreduce/*.lo rm -f src/mpid/pamid/src/coll/alltoall/*.o rm -f src/mpid/pamid/src/coll/alltoall/*.lo rm -f src/mpid/pamid/src/coll/alltoallv/*.o rm -f src/mpid/pamid/src/coll/alltoallv/*.lo rm -f src/mpid/pamid/src/coll/alltoallw/*.o rm -f src/mpid/pamid/src/coll/alltoallw/*.lo rm -f src/mpid/pamid/src/coll/barrier/*.o rm -f src/mpid/pamid/src/coll/barrier/*.lo rm -f src/mpid/pamid/src/coll/bcast/*.o rm -f src/mpid/pamid/src/coll/bcast/*.lo rm -f src/mpid/pamid/src/coll/exscan/*.o rm -f src/mpid/pamid/src/coll/exscan/*.lo rm -f src/mpid/pamid/src/coll/gather/*.o rm -f src/mpid/pamid/src/coll/gather/*.lo rm -f src/mpid/pamid/src/coll/gatherv/*.o rm -f src/mpid/pamid/src/coll/gatherv/*.lo rm -f src/mpid/pamid/src/coll/ired_scat/*.o rm -f src/mpid/pamid/src/coll/ired_scat/*.lo rm -f src/mpid/pamid/src/coll/ired_scat_block/*.o rm -f src/mpid/pamid/src/coll/ired_scat_block/*.lo rm -f src/mpid/pamid/src/coll/reduce/*.o rm -f src/mpid/pamid/src/coll/reduce/*.lo rm -f src/mpid/pamid/src/coll/scan/*.o rm -f src/mpid/pamid/src/coll/scan/*.lo rm -f src/mpid/pamid/src/coll/scatter/*.o rm -f src/mpid/pamid/src/coll/scatter/*.lo rm -f src/mpid/pamid/src/coll/scatterv/*.o rm -f src/mpid/pamid/src/coll/scatterv/*.lo rm -f src/mpid/pamid/src/comm/*.o rm -f src/mpid/pamid/src/comm/*.lo rm -f src/mpid/pamid/src/dyntask/*.o rm -f src/mpid/pamid/src/dyntask/*.lo rm -f src/mpid/pamid/src/misc/*.o rm -f src/mpid/pamid/src/misc/*.lo rm -f src/mpid/pamid/src/mpix/*.o rm -f src/mpid/pamid/src/mpix/*.lo rm -f src/mpid/pamid/src/onesided/*.o rm -f src/mpid/pamid/src/onesided/*.lo rm -f src/mpid/pamid/src/pamix/*.o rm -f src/mpid/pamid/src/pamix/*.lo rm -f src/mpid/pamid/src/pt2pt/*.o rm -f src/mpid/pamid/src/pt2pt/*.lo rm -f src/mpid/pamid/src/pt2pt/persistent/*.o rm -f src/mpid/pamid/src/pt2pt/persistent/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/mpd/*.o rm -f src/nameserv/mpd/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/util/*.o rm -f src/pmi/pmi2/poe/*.o rm -f src/pmi/pmi2/poe/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/util/cvar/*.o rm -f src/util/cvar/*.lo rm -f src/util/dbg/*.o rm -f src/util/dbg/*.lo rm -f src/util/instrm/*.o rm -f src/util/instrm/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/msgs/*.o rm -f src/util/msgs/*.lo rm -f src/util/other/*.o rm -f src/util/other/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f src/util/thread/*.o rm -f src/util/thread/*.lo rm -f *.lo make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' Making clean in examples make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1 && /usr/bin/make -j 4 all stdout: if test ! -h ./src/include/mpio.h ; then \ rm -f ./src/include/mpio.h ; \ ( cd ./src/include && \ ln -s ../mpi/romio/include/mpio.h ) ; \ fi /usr/bin/make all-recursive make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' Making all in /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' CC src/mpltrmem.lo CC src/mplstr.lo CC src/mplenv.lo CC src/mplsock.lo CCLD libmpl.la make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' Making all in /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' Making all in src make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' /usr/bin/make all-am make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' Making all in test make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' Making all in src/mpi/romio make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC mpi-io/close.lo CC mpi-io/file_c2f.lo CC mpi-io/delete.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atallb.lo CC mpi-io/rd_atalle.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_set_view.lo CC adio/common/ad_subarray.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap-sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CC adio/common/hint_fns.lo CCLD libromio.la make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' Making all in src/pm/hydra make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' Making all in ../../mpl make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' Making all in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in src make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' CC traversal.lo CC topology.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-xml-libxml.lo CC topology-linux.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making all in include make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' CC tools/bootstrap/persist/hydra_persist-persist_server.o CC pm/pmiserv/hydra_pmi_proxy-pmip.o CC pm/pmiserv/hydra_pmi_proxy-pmip_cb.o CC pm/pmiserv/hydra_pmi_proxy-pmip_utils.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v1.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v2.o CC pm/pmiserv/hydra_pmi_proxy-common.o CC pm/pmiserv/hydra_pmi_proxy-pmi_v2_common.o CC utils/alloc/alloc.lo CC utils/args/args.lo CC utils/dbg/dbg.lo CC utils/env/env.lo CC utils/launch/launch.lo CC utils/others/others.lo CC utils/signals/signals.lo CC utils/sock/sock.lo CC utils/string/string.lo CC tools/topo/topo.lo CC tools/topo/hwloc/topo_hwloc.lo CC tools/bootstrap/src/bsci_init.lo CC tools/bootstrap/src/bsci_finalize.lo CC tools/bootstrap/src/bsci_launch.lo CC tools/bootstrap/src/bsci_query_node_list.lo CC tools/bootstrap/src/bsci_query_proxy_id.lo CC tools/bootstrap/src/bsci_query_native_int.lo CC tools/bootstrap/src/bsci_wait.lo CC tools/bootstrap/src/bsci_env.lo CC tools/bootstrap/utils/bscu_wait.lo CC tools/bootstrap/utils/bscu_cb.lo CC tools/bootstrap/external/external_common.lo CC tools/bootstrap/external/external_common_launch.lo CC tools/bootstrap/external/fork_init.lo CC tools/bootstrap/external/user_init.lo CC tools/bootstrap/external/manual_init.lo CC tools/bootstrap/external/rsh_init.lo CC tools/bootstrap/external/rsh_env.lo CC tools/bootstrap/external/ssh_init.lo CC tools/bootstrap/external/ssh.lo CC tools/bootstrap/external/ssh_env.lo CC tools/bootstrap/external/ssh_finalize.lo CC tools/bootstrap/external/slurm_init.lo CC tools/bootstrap/external/slurm_launch.lo CC tools/bootstrap/external/slurm_env.lo CC tools/bootstrap/external/slurm_query_native_int.lo CC tools/bootstrap/external/slurm_query_node_list.lo CC tools/bootstrap/external/slurm_query_proxy_id.lo CC tools/bootstrap/external/ll_init.lo CC tools/bootstrap/external/ll_launch.lo CC tools/bootstrap/external/ll_query_native_int.lo CC tools/bootstrap/external/ll_query_node_list.lo CC tools/bootstrap/external/ll_query_proxy_id.lo CC tools/bootstrap/external/ll_env.lo CC tools/bootstrap/external/lsf_init.lo CC tools/bootstrap/external/lsf_query_native_int.lo CC tools/bootstrap/external/lsf_query_node_list.lo CC tools/bootstrap/external/lsf_env.lo CC tools/bootstrap/external/sge_init.lo CC tools/bootstrap/external/sge_query_native_int.lo CC tools/bootstrap/external/sge_query_node_list.lo CC tools/bootstrap/external/sge_env.lo CC tools/bootstrap/external/pbs_init.lo CC tools/bootstrap/external/pbs_query_native_int.lo CC tools/bootstrap/external/pbs_query_node_list.lo CC tools/bootstrap/external/cobalt_init.lo CC tools/bootstrap/external/cobalt_query_native_int.lo CC tools/bootstrap/external/cobalt_query_node_list.lo CC tools/bootstrap/persist/persist_init.lo CC tools/bootstrap/persist/persist_launch.lo CC tools/bootstrap/persist/persist_wait.lo CC tools/ckpoint/ckpoint.lo CC tools/demux/demux.lo CC tools/demux/demux_poll.lo CC tools/demux/demux_select.lo CC tools/debugger/debugger.lo CC tools/ftb/hydt_ftb_dummy.lo CC ui/utils/uiu.lo CC pm/pmiserv/pmiserv_pmi.lo CC pm/pmiserv/pmiserv_pmi_v1.lo CC pm/pmiserv/pmiserv_pmi_v2.lo CC pm/pmiserv/pmiserv_pmci.lo CC pm/pmiserv/pmiserv_cb.lo CC pm/pmiserv/pmiserv_utils.lo CC pm/pmiserv/common.lo CC pm/pmiserv/pmi_v2_common.lo CC tools/nameserver/hydra_nameserver-hydra_nameserver.o CC ui/mpich/mpiexec.o CC ui/mpich/utils.o CCLD libhydra.la CCLD hydra_persist CCLD hydra_nameserver CCLD hydra_pmi_proxy CCLD libpm.la CCLD mpiexec.hydra make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' Making all in . make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' CC src/mpi/attr/attr_delete.lo CC src/mpi/attr/attr_get.lo CC src/mpi/attr/attr_put.lo CC src/mpi/attr/comm_create_keyval.lo CC src/mpi/attr/comm_delete_attr.lo CC src/mpi/attr/comm_get_attr.lo CC src/mpi/attr/comm_free_keyval.lo CC src/mpi/attr/comm_set_attr.lo CC src/mpi/attr/keyval_create.lo CC src/mpi/attr/keyval_free.lo CC src/mpi/attr/type_create_keyval.lo CC src/mpi/attr/type_delete_attr.lo CC src/mpi/attr/type_free_keyval.lo CC src/mpi/attr/type_get_attr.lo CC src/mpi/attr/type_set_attr.lo CC src/mpi/attr/win_create_keyval.lo CC src/mpi/attr/win_delete_attr.lo CC src/mpi/attr/win_free_keyval.lo CC src/mpi/attr/win_get_attr.lo CC src/mpi/attr/win_set_attr.lo CC src/mpi/coll/allreduce.lo CC src/mpi/coll/barrier.lo CC src/mpi/coll/op_create.lo CC src/mpi/coll/op_free.lo CC src/mpi/coll/bcast.lo CC src/mpi/coll/alltoall.lo CC src/mpi/coll/alltoallv.lo CC src/mpi/coll/reduce.lo CC src/mpi/coll/scatter.lo CC src/mpi/coll/gather.lo CC src/mpi/coll/scatterv.lo CC src/mpi/coll/gatherv.lo CC src/mpi/coll/scan.lo CC src/mpi/coll/exscan.lo CC src/mpi/coll/allgather.lo CC src/mpi/coll/allgatherv.lo CC src/mpi/coll/red_scat.lo CC src/mpi/coll/alltoallw.lo CC src/mpi/coll/reduce_local.lo CC src/mpi/coll/op_commutative.lo CC src/mpi/coll/red_scat_block.lo CC src/mpi/coll/iallgather.lo CC src/mpi/coll/iallgatherv.lo CC src/mpi/coll/iallreduce.lo CC src/mpi/coll/ialltoall.lo CC src/mpi/coll/ialltoallv.lo CC src/mpi/coll/ialltoallw.lo CC src/mpi/coll/ibarrier.lo CC src/mpi/coll/ibcast.lo CC src/mpi/coll/iexscan.lo CC src/mpi/coll/igather.lo CC src/mpi/coll/igatherv.lo CC src/mpi/coll/ired_scat.lo CC src/mpi/coll/ired_scat_block.lo CC src/mpi/coll/ireduce.lo CC src/mpi/coll/iscan.lo CC src/mpi/coll/iscatter.lo CC src/mpi/coll/iscatterv.lo CC src/mpi/comm/comm_compare.lo CC src/mpi/comm/comm_create.lo CC src/mpi/comm/comm_create_group.lo CC src/mpi/comm/comm_dup.lo CC src/mpi/comm/comm_dup_with_info.lo CC src/mpi/comm/comm_free.lo CC src/mpi/comm/comm_get_name.lo CC src/mpi/comm/comm_get_info.lo CC src/mpi/comm/comm_set_info.lo CC src/mpi/comm/comm_group.lo CC src/mpi/comm/comm_idup.lo CC src/mpi/comm/comm_rank.lo CC src/mpi/comm/comm_size.lo CC src/mpi/comm/comm_remote_group.lo CC src/mpi/comm/comm_remote_size.lo CC src/mpi/comm/comm_set_name.lo CC src/mpi/comm/comm_split.lo CC src/mpi/comm/comm_test_inter.lo CC src/mpi/comm/intercomm_create.lo CC src/mpi/comm/intercomm_merge.lo CC src/mpi/comm/comm_split_type.lo CC src/mpi/comm/comm_group_failed.lo CC src/mpi/comm/comm_reenable_anysource.lo CC src/mpi/comm/comm_remote_group_failed.lo CC src/mpi/datatype/address.lo CC src/mpi/datatype/get_address.lo CC src/mpi/datatype/get_count.lo CC src/mpi/datatype/get_elements.lo CC src/mpi/datatype/get_elements_x.lo CC src/mpi/datatype/pack.lo CC src/mpi/datatype/unpack.lo CC src/mpi/datatype/pack_size.lo CC src/mpi/datatype/status_set_elements.lo CC src/mpi/datatype/status_set_elements_x.lo CC src/mpi/datatype/type_get_name.lo CC src/mpi/datatype/type_set_name.lo CC src/mpi/datatype/type_size.lo CC src/mpi/datatype/type_size_x.lo CC src/mpi/datatype/type_extent.lo CC src/mpi/datatype/type_vector.lo CC src/mpi/datatype/type_commit.lo CC src/mpi/datatype/type_indexed.lo CC src/mpi/datatype/type_hindexed.lo CC src/mpi/datatype/type_struct.lo CC src/mpi/datatype/type_contiguous.lo CC src/mpi/datatype/type_free.lo CC src/mpi/datatype/type_hvector.lo CC src/mpi/datatype/type_dup.lo CC src/mpi/datatype/type_get_envelope.lo CC src/mpi/datatype/type_get_contents.lo CC src/mpi/datatype/type_ub.lo CC src/mpi/datatype/type_lb.lo CC src/mpi/datatype/type_get_extent.lo CC src/mpi/datatype/type_get_extent_x.lo CC src/mpi/datatype/type_get_true_extent.lo CC src/mpi/datatype/type_get_true_extent_x.lo CC src/mpi/datatype/type_match_size.lo CC src/mpi/datatype/type_create_struct.lo CC src/mpi/datatype/type_create_hindexed.lo CC src/mpi/datatype/type_create_hvector.lo CC src/mpi/datatype/pack_external.lo CC src/mpi/datatype/pack_external_size.lo CC src/mpi/datatype/unpack_external.lo CC src/mpi/datatype/type_create_indexed_block.lo CC src/mpi/datatype/type_create_hindexed_block.lo CC src/mpi/datatype/type_create_resized.lo CC src/mpi/datatype/type_create_darray.lo CC src/mpi/datatype/type_create_subarray.lo CC src/mpi/errhan/add_error_code.lo CC src/mpi/errhan/add_error_class.lo CC src/mpi/errhan/add_error_string.lo CC src/mpi/errhan/comm_call_errhandler.lo CC src/mpi/errhan/comm_create_errhandler.lo CC src/mpi/errhan/comm_get_errhandler.lo CC src/mpi/errhan/comm_set_errhandler.lo CC src/mpi/errhan/errhandler_create.lo CC src/mpi/errhan/errhandler_free.lo CC src/mpi/errhan/errhandler_get.lo CC src/mpi/errhan/errhandler_set.lo CC src/mpi/errhan/error_class.lo CC src/mpi/errhan/error_string.lo CC src/mpi/errhan/file_create_errhandler.lo CC src/mpi/errhan/file_get_errhandler.lo CC src/mpi/errhan/file_set_errhandler.lo CC src/mpi/errhan/file_call_errhandler.lo CC src/mpi/errhan/win_create_errhandler.lo CC src/mpi/errhan/win_call_errhandler.lo CC src/mpi/errhan/win_get_errhandler.lo CC src/mpi/errhan/win_set_errhandler.lo CC src/mpi/group/group_compare.lo CC src/mpi/group/group_difference.lo CC src/mpi/group/group_excl.lo CC src/mpi/group/group_free.lo CC src/mpi/group/group_incl.lo CC src/mpi/group/group_intersection.lo CC src/mpi/group/group_range_excl.lo CC src/mpi/group/group_range_incl.lo CC src/mpi/group/group_rank.lo CC src/mpi/group/group_size.lo CC src/mpi/group/group_translate_ranks.lo CC src/mpi/group/group_union.lo CC src/mpi/info/info_create.lo CC src/mpi/info/info_delete.lo CC src/mpi/info/info_dup.lo CC src/mpi/info/info_free.lo CC src/mpi/info/info_get.lo CC src/mpi/info/info_getn.lo CC src/mpi/info/info_getnth.lo CC src/mpi/info/info_getvallen.lo CC src/mpi/info/info_set.lo CC src/mpi/init/abort.lo CC src/mpi/init/init.lo CC src/mpi/init/initialized.lo CC src/mpi/init/initthread.lo CC src/mpi/init/ismain.lo CC src/mpi/init/finalize.lo CC src/mpi/init/finalized.lo CC src/mpi/init/querythread.lo CC src/mpi/pt2pt/bsend.lo CC src/mpi/pt2pt/bsend_init.lo CC src/mpi/pt2pt/bufattach.lo CC src/mpi/pt2pt/buffree.lo CC src/mpi/pt2pt/cancel.lo CC src/mpi/pt2pt/greq_start.lo CC src/mpi/pt2pt/greq_complete.lo CC src/mpi/pt2pt/ibsend.lo CC src/mpi/pt2pt/improbe.lo CC src/mpi/pt2pt/imrecv.lo CC src/mpi/pt2pt/iprobe.lo CC src/mpi/pt2pt/irecv.lo CC src/mpi/pt2pt/irsend.lo CC src/mpi/pt2pt/isend.lo CC src/mpi/pt2pt/issend.lo CC src/mpi/pt2pt/mprobe.lo CC src/mpi/pt2pt/mrecv.lo CC src/mpi/pt2pt/probe.lo CC src/mpi/pt2pt/recv.lo CC src/mpi/pt2pt/recv_init.lo CC src/mpi/pt2pt/request_free.lo CC src/mpi/pt2pt/request_get_status.lo CC src/mpi/pt2pt/rsend.lo CC src/mpi/pt2pt/rsend_init.lo CC src/mpi/pt2pt/send.lo CC src/mpi/pt2pt/send_init.lo CC src/mpi/pt2pt/sendrecv.lo CC src/mpi/pt2pt/sendrecv_rep.lo CC src/mpi/pt2pt/status_set_cancelled.lo CC src/mpi/pt2pt/ssend.lo CC src/mpi/pt2pt/ssend_init.lo CC src/mpi/pt2pt/start.lo CC src/mpi/pt2pt/startall.lo CC src/mpi/pt2pt/test.lo CC src/mpi/pt2pt/test_cancelled.lo CC src/mpi/pt2pt/testall.lo CC src/mpi/pt2pt/testany.lo CC src/mpi/pt2pt/testsome.lo CC src/mpi/pt2pt/wait.lo CC src/mpi/pt2pt/waitall.lo CC src/mpi/pt2pt/waitany.lo CC src/mpi/pt2pt/waitsome.lo CC src/mpi/rma/accumulate.lo CC src/mpi/rma/alloc_mem.lo CC src/mpi/rma/compare_and_swap.lo CC src/mpi/rma/fetch_and_op.lo CC src/mpi/rma/free_mem.lo CC src/mpi/rma/get.lo CC src/mpi/rma/get_accumulate.lo CC src/mpi/rma/put.lo CC src/mpi/rma/raccumulate.lo CC src/mpi/rma/rget.lo CC src/mpi/rma/rget_accumulate.lo CC src/mpi/rma/rput.lo CC src/mpi/rma/win_allocate.lo CC src/mpi/rma/win_allocate_shared.lo CC src/mpi/rma/win_attach.lo CC src/mpi/rma/win_complete.lo CC src/mpi/rma/win_create.lo CC src/mpi/rma/win_create_dynamic.lo CC src/mpi/rma/win_detach.lo CC src/mpi/rma/win_fence.lo CC src/mpi/rma/win_flush.lo CC src/mpi/rma/win_flush_all.lo CC src/mpi/rma/win_flush_local.lo CC src/mpi/rma/win_flush_local_all.lo CC src/mpi/rma/win_free.lo CC src/mpi/rma/win_get_group.lo CC src/mpi/rma/win_get_info.lo CC src/mpi/rma/win_get_name.lo CC src/mpi/rma/win_lock.lo CC src/mpi/rma/win_lock_all.lo CC src/mpi/rma/win_post.lo CC src/mpi/rma/win_set_info.lo CC src/mpi/rma/win_set_name.lo CC src/mpi/rma/win_shared_query.lo CC src/mpi/rma/win_start.lo CC src/mpi/rma/win_sync.lo CC src/mpi/rma/win_test.lo CC src/mpi/rma/win_unlock.lo CC src/mpi/rma/win_unlock_all.lo CC src/mpi/rma/win_wait.lo CC src/mpi/timer/wtime.lo CC src/mpi/timer/wtick.lo CC src/mpi/topo/cart_coords.lo CC src/mpi/topo/cart_create.lo CC src/mpi/topo/cart_get.lo CC src/mpi/topo/cart_map.lo CC src/mpi/topo/cart_rank.lo CC src/mpi/topo/cart_shift.lo CC src/mpi/topo/cart_sub.lo CC src/mpi/topo/dims_create.lo CC src/mpi/topo/graph_get.lo CC src/mpi/topo/graph_map.lo CC src/mpi/topo/graph_nbr.lo CC src/mpi/topo/graphcreate.lo CC src/mpi/topo/graphdimsget.lo CC src/mpi/topo/graphnbrcnt.lo CC src/mpi/topo/cartdim_get.lo CC src/mpi/topo/topo_test.lo CC src/mpi/topo/dist_gr_create_adj.lo CC src/mpi/topo/dist_gr_create.lo CC src/mpi/topo/dist_gr_neighb_count.lo CC src/mpi/topo/dist_gr_neighb.lo CC src/mpi/topo/inhb_allgather.lo CC src/mpi/topo/inhb_allgatherv.lo CC src/mpi/topo/inhb_alltoall.lo CC src/mpi/topo/inhb_alltoallv.lo CC src/mpi/topo/inhb_alltoallw.lo CC src/mpi/topo/nhb_allgather.lo CC src/mpi/topo/nhb_allgatherv.lo CC src/mpi/topo/nhb_alltoall.lo CC src/mpi/topo/nhb_alltoallv.lo CC src/mpi/topo/nhb_alltoallw.lo CC src/binding/f90/create_f90_int.lo CC src/binding/f90/create_f90_real.lo CC src/binding/f90/create_f90_complex.lo CC src/binding/f90/typef90cmplxf.lo CC src/binding/f90/typef90realf.lo CC src/binding/f90/typef90intf.lo CC src/mpi_t/cat_changed.lo CC src/mpi_t/cat_get_categories.lo CC src/mpi_t/cat_get_cvars.lo CC src/mpi_t/cat_get_info.lo CC src/mpi_t/cat_get_num.lo CC src/mpi_t/cat_get_pvars.lo CC src/mpi_t/cvar_get_info.lo CC src/mpi_t/cvar_get_num.lo CC src/mpi_t/cvar_handle_alloc.lo CC src/mpi_t/cvar_handle_free.lo CC src/mpi_t/cvar_read.lo CC src/mpi_t/cvar_write.lo CC src/mpi_t/enum_get_info.lo CC src/mpi_t/enum_get_item.lo CC src/mpi_t/mpit_finalize.lo CC src/mpi_t/mpit_initthread.lo CC src/mpi_t/pvar_get_info.lo CC src/mpi_t/pvar_get_num.lo CC src/mpi_t/pvar_handle_alloc.lo CC src/mpi_t/pvar_handle_free.lo CC src/mpi_t/pvar_read.lo CC src/mpi_t/pvar_readreset.lo CC src/mpi_t/pvar_reset.lo CC src/mpi_t/pvar_session_create.lo CC src/mpi_t/pvar_session_free.lo CC src/mpi_t/pvar_start.lo CC src/mpi_t/pvar_stop.lo CC src/mpi_t/pvar_write.lo CC src/binding/f77/setbot.lo F77 src/binding/f77/setbotf.lo CC src/binding/f77/lib_libfmpich_la-sendf.lo CC src/binding/f77/lib_libfmpich_la-recvf.lo CC src/binding/f77/lib_libfmpich_la-get_countf.lo CC src/binding/f77/lib_libfmpich_la-bsendf.lo CC src/binding/f77/lib_libfmpich_la-ssendf.lo CC src/binding/f77/lib_libfmpich_la-rsendf.lo CC src/binding/f77/lib_libfmpich_la-bufattachf.lo CC src/binding/f77/lib_libfmpich_la-bufdetachf.lo CC src/binding/f77/lib_libfmpich_la-isendf.lo CC src/binding/f77/lib_libfmpich_la-ibsendf.lo CC src/binding/f77/lib_libfmpich_la-issendf.lo CC src/binding/f77/lib_libfmpich_la-irsendf.lo CC src/binding/f77/lib_libfmpich_la-irecvf.lo CC src/binding/f77/lib_libfmpich_la-waitf.lo CC src/binding/f77/lib_libfmpich_la-testf.lo CC src/binding/f77/lib_libfmpich_la-request_freef.lo CC src/binding/f77/lib_libfmpich_la-waitanyf.lo CC src/binding/f77/lib_libfmpich_la-testanyf.lo CC src/binding/f77/lib_libfmpich_la-waitallf.lo CC src/binding/f77/lib_libfmpich_la-testallf.lo CC src/binding/f77/lib_libfmpich_la-waitsomef.lo CC src/binding/f77/lib_libfmpich_la-testsomef.lo CC src/binding/f77/lib_libfmpich_la-iprobef.lo CC src/binding/f77/lib_libfmpich_la-probef.lo CC src/binding/f77/lib_libfmpich_la-cancelf.lo CC src/binding/f77/lib_libfmpich_la-testcancelf.lo CC src/binding/f77/lib_libfmpich_la-send_initf.lo CC src/binding/f77/lib_libfmpich_la-bsend_initf.lo CC src/binding/f77/lib_libfmpich_la-ssend_initf.lo CC src/binding/f77/lib_libfmpich_la-rsend_initf.lo CC src/binding/f77/lib_libfmpich_la-recv_initf.lo CC src/binding/f77/lib_libfmpich_la-startf.lo CC src/binding/f77/lib_libfmpich_la-startallf.lo CC src/binding/f77/lib_libfmpich_la-sendrecvf.lo CC src/binding/f77/lib_libfmpich_la-sndrcvrplf.lo CC src/binding/f77/lib_libfmpich_la-typecontigf.lo CC src/binding/f77/lib_libfmpich_la-type_vectorf.lo CC src/binding/f77/lib_libfmpich_la-type_hvectorf.lo CC src/binding/f77/lib_libfmpich_la-type_indexedf.lo CC src/binding/f77/lib_libfmpich_la-type_hindexedf.lo CC src/binding/f77/lib_libfmpich_la-type_structf.lo CC src/binding/f77/lib_libfmpich_la-type_extentf.lo CC src/binding/f77/lib_libfmpich_la-type_sizef.lo CC src/binding/f77/lib_libfmpich_la-type_lbf.lo CC src/binding/f77/lib_libfmpich_la-type_ubf.lo CC src/binding/f77/lib_libfmpich_la-type_commitf.lo CC src/binding/f77/lib_libfmpich_la-type_freef.lo CC src/binding/f77/lib_libfmpich_la-get_elementsf.lo CC src/binding/f77/lib_libfmpich_la-packf.lo CC src/binding/f77/lib_libfmpich_la-unpackf.lo CC src/binding/f77/lib_libfmpich_la-pack_sizef.lo CC src/binding/f77/lib_libfmpich_la-barrierf.lo CC src/binding/f77/lib_libfmpich_la-bcastf.lo CC src/binding/f77/lib_libfmpich_la-gatherf.lo CC src/binding/f77/lib_libfmpich_la-gathervf.lo CC src/binding/f77/lib_libfmpich_la-scatterf.lo CC src/binding/f77/lib_libfmpich_la-scattervf.lo CC src/binding/f77/lib_libfmpich_la-allgatherf.lo CC src/binding/f77/lib_libfmpich_la-allgathervf.lo CC src/binding/f77/lib_libfmpich_la-alltoallf.lo CC src/binding/f77/lib_libfmpich_la-alltoallvf.lo CC src/binding/f77/lib_libfmpich_la-alltoallwf.lo CC src/binding/f77/lib_libfmpich_la-exscanf.lo CC src/binding/f77/lib_libfmpich_la-reducef.lo CC src/binding/f77/lib_libfmpich_la-op_createf.lo CC src/binding/f77/lib_libfmpich_la-op_freef.lo CC src/binding/f77/lib_libfmpich_la-allreducef.lo CC src/binding/f77/lib_libfmpich_la-redscatf.lo CC src/binding/f77/lib_libfmpich_la-scanf.lo CC src/binding/f77/lib_libfmpich_la-group_sizef.lo CC src/binding/f77/lib_libfmpich_la-group_rankf.lo CC src/binding/f77/lib_libfmpich_la-grouptranksf.lo CC src/binding/f77/lib_libfmpich_la-group_comparef.lo CC src/binding/f77/lib_libfmpich_la-comm_groupf.lo CC src/binding/f77/lib_libfmpich_la-group_unionf.lo CC src/binding/f77/lib_libfmpich_la-groupinterf.lo CC src/binding/f77/lib_libfmpich_la-groupdifff.lo CC src/binding/f77/lib_libfmpich_la-group_inclf.lo CC src/binding/f77/lib_libfmpich_la-group_exclf.lo CC src/binding/f77/lib_libfmpich_la-grouprinclf.lo CC src/binding/f77/lib_libfmpich_la-grouprexclf.lo CC src/binding/f77/lib_libfmpich_la-group_freef.lo CC src/binding/f77/lib_libfmpich_la-comm_sizef.lo CC src/binding/f77/lib_libfmpich_la-comm_rankf.lo CC src/binding/f77/lib_libfmpich_la-comm_comparef.lo CC src/binding/f77/lib_libfmpich_la-comm_dupf.lo CC src/binding/f77/lib_libfmpich_la-comm_dup_with_infof.lo CC src/binding/f77/lib_libfmpich_la-comm_createf.lo CC src/binding/f77/lib_libfmpich_la-comm_splitf.lo CC src/binding/f77/lib_libfmpich_la-comm_freef.lo CC src/binding/f77/lib_libfmpich_la-commtesticf.lo CC src/binding/f77/lib_libfmpich_la-commrsizef.lo CC src/binding/f77/lib_libfmpich_la-commrgroupf.lo CC src/binding/f77/lib_libfmpich_la-iccreatef.lo CC src/binding/f77/lib_libfmpich_la-icmergef.lo CC src/binding/f77/lib_libfmpich_la-keyval_freef.lo CC src/binding/f77/lib_libfmpich_la-attr_putf.lo CC src/binding/f77/lib_libfmpich_la-attr_getf.lo CC src/binding/f77/lib_libfmpich_la-attr_deletef.lo CC src/binding/f77/lib_libfmpich_la-topo_testf.lo CC src/binding/f77/lib_libfmpich_la-cart_createf.lo CC src/binding/f77/lib_libfmpich_la-dims_createf.lo CC src/binding/f77/lib_libfmpich_la-graph_createf.lo CC src/binding/f77/lib_libfmpich_la-graphdims_getf.lo CC src/binding/f77/lib_libfmpich_la-graph_getf.lo CC src/binding/f77/lib_libfmpich_la-cartdim_getf.lo CC src/binding/f77/lib_libfmpich_la-cart_getf.lo CC src/binding/f77/lib_libfmpich_la-cart_rankf.lo CC src/binding/f77/lib_libfmpich_la-cart_coordsf.lo CC src/binding/f77/lib_libfmpich_la-grfnbcountf.lo CC src/binding/f77/lib_libfmpich_la-grfnbrsf.lo CC src/binding/f77/lib_libfmpich_la-cart_shiftf.lo CC src/binding/f77/lib_libfmpich_la-cart_subf.lo CC src/binding/f77/lib_libfmpich_la-cart_mapf.lo CC src/binding/f77/lib_libfmpich_la-graph_mapf.lo CC src/binding/f77/lib_libfmpich_la-getpnamef.lo CC src/binding/f77/lib_libfmpich_la-get_versionf.lo CC src/binding/f77/lib_libfmpich_la-get_library_versionf.lo CC src/binding/f77/lib_libfmpich_la-errhcreatef.lo CC src/binding/f77/lib_libfmpich_la-errhsetf.lo CC src/binding/f77/lib_libfmpich_la-errhgetf.lo CC src/binding/f77/lib_libfmpich_la-errhfreef.lo CC src/binding/f77/lib_libfmpich_la-error_stringf.lo CC src/binding/f77/lib_libfmpich_la-error_classf.lo CC src/binding/f77/lib_libfmpich_la-finalizef.lo CC src/binding/f77/lib_libfmpich_la-initializedf.lo CC src/binding/f77/lib_libfmpich_la-abortf.lo CC src/binding/f77/lib_libfmpich_la-close_portf.lo CC src/binding/f77/lib_libfmpich_la-comm_acceptf.lo CC src/binding/f77/lib_libfmpich_la-comm_connectf.lo CC src/binding/f77/lib_libfmpich_la-commdiscf.lo CC src/binding/f77/lib_libfmpich_la-commparentf.lo CC src/binding/f77/lib_libfmpich_la-comm_joinf.lo CC src/binding/f77/lib_libfmpich_la-comm_spawnf.lo CC src/binding/f77/lib_libfmpich_la-spawnmultf.lo CC src/binding/f77/lib_libfmpich_la-lookup_namef.lo CC src/binding/f77/lib_libfmpich_la-open_portf.lo CC src/binding/f77/lib_libfmpich_la-publish_namef.lo CC src/binding/f77/lib_libfmpich_la-unpubnamef.lo CC src/binding/f77/lib_libfmpich_la-comm_set_infof.lo CC src/binding/f77/lib_libfmpich_la-comm_get_infof.lo CC src/binding/f77/lib_libfmpich_la-accumulatef.lo CC src/binding/f77/lib_libfmpich_la-getf.lo CC src/binding/f77/lib_libfmpich_la-putf.lo CC src/binding/f77/lib_libfmpich_la-win_completef.lo CC src/binding/f77/lib_libfmpich_la-win_createf.lo CC src/binding/f77/lib_libfmpich_la-win_fencef.lo CC src/binding/f77/lib_libfmpich_la-win_freef.lo CC src/binding/f77/lib_libfmpich_la-win_get_groupf.lo CC src/binding/f77/lib_libfmpich_la-win_lockf.lo CC src/binding/f77/lib_libfmpich_la-win_postf.lo CC src/binding/f77/lib_libfmpich_la-win_startf.lo CC src/binding/f77/lib_libfmpich_la-win_testf.lo CC src/binding/f77/lib_libfmpich_la-win_unlockf.lo CC src/binding/f77/lib_libfmpich_la-win_waitf.lo CC src/binding/f77/lib_libfmpich_la-win_allocatef.lo CC src/binding/f77/lib_libfmpich_la-win_allocate_sharedf.lo CC src/binding/f77/lib_libfmpich_la-win_shared_queryf.lo CC src/binding/f77/lib_libfmpich_la-win_create_dynamicf.lo CC src/binding/f77/lib_libfmpich_la-win_attachf.lo CC src/binding/f77/lib_libfmpich_la-win_detachf.lo CC src/binding/f77/lib_libfmpich_la-win_get_infof.lo CC src/binding/f77/lib_libfmpich_la-win_set_infof.lo CC src/binding/f77/lib_libfmpich_la-get_accumulatef.lo CC src/binding/f77/lib_libfmpich_la-fetch_and_opf.lo CC src/binding/f77/lib_libfmpich_la-compare_and_swapf.lo CC src/binding/f77/lib_libfmpich_la-rputf.lo CC src/binding/f77/lib_libfmpich_la-rgetf.lo CC src/binding/f77/lib_libfmpich_la-raccumulatef.lo CC src/binding/f77/lib_libfmpich_la-rget_accumulatef.lo CC src/binding/f77/lib_libfmpich_la-win_lock_allf.lo CC src/binding/f77/lib_libfmpich_la-win_unlock_allf.lo CC src/binding/f77/lib_libfmpich_la-win_flushf.lo CC src/binding/f77/lib_libfmpich_la-win_flush_allf.lo CC src/binding/f77/lib_libfmpich_la-win_flush_localf.lo CC src/binding/f77/lib_libfmpich_la-win_flush_local_allf.lo CC src/binding/f77/lib_libfmpich_la-win_syncf.lo CC src/binding/f77/lib_libfmpich_la-adderrclassf.lo CC src/binding/f77/lib_libfmpich_la-adderrcodef.lo CC src/binding/f77/lib_libfmpich_la-adderrstringf.lo CC src/binding/f77/lib_libfmpich_la-commcallerrf.lo CC src/binding/f77/lib_libfmpich_la-commnewkeyf.lo CC src/binding/f77/lib_libfmpich_la-commdelattrf.lo CC src/binding/f77/lib_libfmpich_la-commfreekeyf.lo CC src/binding/f77/lib_libfmpich_la-comm_get_attrf.lo CC src/binding/f77/lib_libfmpich_la-commgetnamf.lo CC src/binding/f77/lib_libfmpich_la-comm_set_attrf.lo CC src/binding/f77/lib_libfmpich_la-comm_set_namef.lo CC src/binding/f77/lib_libfmpich_la-filecallerrf.lo CC src/binding/f77/lib_libfmpich_la-greqcompletef.lo CC src/binding/f77/lib_libfmpich_la-greqstartf.lo CC src/binding/f77/lib_libfmpich_la-isthrmainf.lo CC src/binding/f77/lib_libfmpich_la-query_threadf.lo CC src/binding/f77/lib_libfmpich_la-statgetclf.lo CC src/binding/f77/lib_libfmpich_la-statsetelf.lo CC src/binding/f77/lib_libfmpich_la-typenewkeyf.lo CC src/binding/f77/lib_libfmpich_la-typedelattrf.lo CC src/binding/f77/lib_libfmpich_la-type_dupf.lo CC src/binding/f77/lib_libfmpich_la-typefreekeyf.lo CC src/binding/f77/lib_libfmpich_la-type_get_attrf.lo CC src/binding/f77/lib_libfmpich_la-typegetcntsf.lo CC src/binding/f77/lib_libfmpich_la-typegetenvf.lo CC src/binding/f77/lib_libfmpich_la-typegnamef.lo CC src/binding/f77/lib_libfmpich_la-typesetattrf.lo CC src/binding/f77/lib_libfmpich_la-typesetnamef.lo CC src/binding/f77/lib_libfmpich_la-type_match_sizef.lo CC src/binding/f77/lib_libfmpich_la-wincallerrf.lo CC src/binding/f77/lib_libfmpich_la-winnewkeyf.lo CC src/binding/f77/lib_libfmpich_la-windelattrf.lo CC src/binding/f77/lib_libfmpich_la-winfreekeyf.lo CC src/binding/f77/lib_libfmpich_la-win_get_attrf.lo CC src/binding/f77/lib_libfmpich_la-win_get_namef.lo CC src/binding/f77/lib_libfmpich_la-win_set_attrf.lo CC src/binding/f77/lib_libfmpich_la-win_set_namef.lo CC src/binding/f77/lib_libfmpich_la-alloc_memf.lo CC src/binding/f77/lib_libfmpich_la-commcreerrf.lo CC src/binding/f77/lib_libfmpich_la-commgeterrf.lo CC src/binding/f77/lib_libfmpich_la-commseterrf.lo CC src/binding/f77/lib_libfmpich_la-filecreerrf.lo CC src/binding/f77/lib_libfmpich_la-filegeterrf.lo CC src/binding/f77/lib_libfmpich_la-fileseterrf.lo CC src/binding/f77/lib_libfmpich_la-finalizedf.lo CC src/binding/f77/lib_libfmpich_la-free_memf.lo CC src/binding/f77/lib_libfmpich_la-info_createf.lo CC src/binding/f77/lib_libfmpich_la-info_deletef.lo CC src/binding/f77/lib_libfmpich_la-info_dupf.lo CC src/binding/f77/lib_libfmpich_la-info_freef.lo CC src/binding/f77/lib_libfmpich_la-info_getf.lo CC src/binding/f77/lib_libfmpich_la-infognkf.lo CC src/binding/f77/lib_libfmpich_la-infognthkf.lo CC src/binding/f77/lib_libfmpich_la-infovallenf.lo CC src/binding/f77/lib_libfmpich_la-info_setf.lo CC src/binding/f77/lib_libfmpich_la-pack_externalf.lo CC src/binding/f77/lib_libfmpich_la-packesizef.lo CC src/binding/f77/lib_libfmpich_la-reqgetstatf.lo CC src/binding/f77/lib_libfmpich_la-typedarrayf.lo CC src/binding/f77/lib_libfmpich_la-typechindf.lo CC src/binding/f77/lib_libfmpich_la-typechvecf.lo CC src/binding/f77/lib_libfmpich_la-typecindbf.lo CC src/binding/f77/lib_libfmpich_la-type_create_hindexed_blockf.lo CC src/binding/f77/lib_libfmpich_la-typecresizef.lo CC src/binding/f77/lib_libfmpich_la-typecstructf.lo CC src/binding/f77/lib_libfmpich_la-typecsubarrf.lo CC src/binding/f77/lib_libfmpich_la-typegetextentf.lo CC src/binding/f77/lib_libfmpich_la-typegtextf.lo CC src/binding/f77/lib_libfmpich_la-unpackextf.lo CC src/binding/f77/lib_libfmpich_la-wincreerrf.lo CC src/binding/f77/lib_libfmpich_la-wingeterrf.lo CC src/binding/f77/lib_libfmpich_la-winseterrf.lo CC src/binding/f77/lib_libfmpich_la-reduce_localf.lo CC src/binding/f77/lib_libfmpich_la-op_commutativef.lo CC src/binding/f77/lib_libfmpich_la-reduce_scatter_blockf.lo CC src/binding/f77/lib_libfmpich_la-dist_graph_create_adjacentf.lo CC src/binding/f77/lib_libfmpich_la-dist_graph_createf.lo CC src/binding/f77/lib_libfmpich_la-dist_graph_neighbors_countf.lo CC src/binding/f77/lib_libfmpich_la-dist_graph_neighborsf.lo CC src/binding/f77/lib_libfmpich_la-improbef.lo CC src/binding/f77/lib_libfmpich_la-imrecvf.lo CC src/binding/f77/lib_libfmpich_la-mprobef.lo CC src/binding/f77/lib_libfmpich_la-mrecvf.lo CC src/binding/f77/lib_libfmpich_la-comm_idupf.lo CC src/binding/f77/lib_libfmpich_la-ibarrierf.lo CC src/binding/f77/lib_libfmpich_la-ibcastf.lo CC src/binding/f77/lib_libfmpich_la-igatherf.lo CC src/binding/f77/lib_libfmpich_la-igathervf.lo CC src/binding/f77/lib_libfmpich_la-iscatterf.lo CC src/binding/f77/lib_libfmpich_la-iscattervf.lo CC src/binding/f77/lib_libfmpich_la-iallgatherf.lo CC src/binding/f77/lib_libfmpich_la-iallgathervf.lo CC src/binding/f77/lib_libfmpich_la-ialltoallf.lo CC src/binding/f77/lib_libfmpich_la-ialltoallvf.lo CC src/binding/f77/lib_libfmpich_la-ialltoallwf.lo CC src/binding/f77/lib_libfmpich_la-ireducef.lo CC src/binding/f77/lib_libfmpich_la-iallreducef.lo CC src/binding/f77/lib_libfmpich_la-ireduce_scatterf.lo CC src/binding/f77/lib_libfmpich_la-ireduce_scatter_blockf.lo CC src/binding/f77/lib_libfmpich_la-iscanf.lo CC src/binding/f77/lib_libfmpich_la-iexscanf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_allgatherf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_allgathervf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_alltoallf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_alltoallvf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_alltoallwf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_allgatherf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_allgathervf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_alltoallf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_alltoallvf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_alltoallwf.lo CC src/binding/f77/lib_libfmpich_la-comm_split_typef.lo CC src/binding/f77/lib_libfmpich_la-get_elements_xf.lo CC src/binding/f77/lib_libfmpich_la-status_set_elements_xf.lo CC src/binding/f77/lib_libfmpich_la-type_get_extent_xf.lo CC src/binding/f77/lib_libfmpich_la-type_get_true_extent_xf.lo CC src/binding/f77/lib_libfmpich_la-type_size_xf.lo CC src/binding/f77/lib_libfmpich_la-comm_create_groupf.lo CC src/binding/f77/lib_libfmpich_la-comm_group_failedf.lo CC src/binding/f77/lib_libfmpich_la-comm_remote_group_failedf.lo CC src/binding/f77/lib_libfmpich_la-comm_reenable_anysourcef.lo CC src/binding/f77/lib_libfmpich_la-file_openf.lo CC src/binding/f77/lib_libfmpich_la-file_closef.lo CC src/binding/f77/lib_libfmpich_la-file_deletef.lo CC src/binding/f77/lib_libfmpich_la-file_set_sizef.lo CC src/binding/f77/lib_libfmpich_la-file_preallocatef.lo CC src/binding/f77/lib_libfmpich_la-file_get_sizef.lo CC src/binding/f77/lib_libfmpich_la-file_get_groupf.lo CC src/binding/f77/lib_libfmpich_la-file_get_amodef.lo CC src/binding/f77/lib_libfmpich_la-file_set_infof.lo CC src/binding/f77/lib_libfmpich_la-file_get_infof.lo CC src/binding/f77/lib_libfmpich_la-file_set_viewf.lo CC src/binding/f77/lib_libfmpich_la-file_get_viewf.lo CC src/binding/f77/lib_libfmpich_la-file_read_atf.lo CC src/binding/f77/lib_libfmpich_la-file_read_at_allf.lo CC src/binding/f77/lib_libfmpich_la-file_write_atf.lo CC src/binding/f77/lib_libfmpich_la-file_write_at_allf.lo CC src/binding/f77/lib_libfmpich_la-file_iread_atf.lo CC src/binding/f77/lib_libfmpich_la-file_iwrite_atf.lo CC src/binding/f77/lib_libfmpich_la-file_readf.lo CC src/binding/f77/lib_libfmpich_la-file_read_allf.lo CC src/binding/f77/lib_libfmpich_la-file_writef.lo CC src/binding/f77/lib_libfmpich_la-file_write_allf.lo CC src/binding/f77/lib_libfmpich_la-file_ireadf.lo CC src/binding/f77/lib_libfmpich_la-file_iwritef.lo CC src/binding/f77/lib_libfmpich_la-file_seekf.lo CC src/binding/f77/lib_libfmpich_la-file_get_positionf.lo CC src/binding/f77/lib_libfmpich_la-file_get_byte_offsetf.lo CC src/binding/f77/lib_libfmpich_la-file_read_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_write_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_iread_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_iwrite_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_read_orderedf.lo CC src/binding/f77/lib_libfmpich_la-file_write_orderedf.lo CC src/binding/f77/lib_libfmpich_la-file_seek_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_get_position_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_read_at_all_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_read_at_all_endf.lo CC src/binding/f77/lib_libfmpich_la-file_write_at_all_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_write_at_all_endf.lo CC src/binding/f77/lib_libfmpich_la-file_read_all_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_read_all_endf.lo CC src/binding/f77/lib_libfmpich_la-file_write_all_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_write_all_endf.lo CC src/binding/f77/lib_libfmpich_la-file_read_ordered_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_read_ordered_endf.lo CC src/binding/f77/lib_libfmpich_la-file_write_ordered_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_write_ordered_endf.lo CC src/binding/f77/lib_libfmpich_la-file_get_type_extentf.lo CC src/binding/f77/lib_libfmpich_la-register_datarepf.lo CC src/binding/f77/lib_libfmpich_la-file_set_atomicityf.lo CC src/binding/f77/lib_libfmpich_la-file_get_atomicityf.lo CC src/binding/f77/lib_libfmpich_la-file_syncf.lo CC src/binding/f77/lib_libfmpich_la-initf.lo CC src/binding/f77/lib_libfmpich_la-initthreadf.lo CC src/binding/f77/lib_libfmpich_la-pcontrolf.lo CC src/binding/f77/lib_libfmpich_la-addressf.lo CC src/binding/f77/lib_libfmpich_la-getaddressf.lo CC src/binding/f77/lib_libfmpich_la-wtimef.lo CC src/binding/f77/lib_libfmpich_la-wtickf.lo CC src/binding/f77/lib_libfmpich_la-keyval_createf.lo CC src/binding/f77/lib_libfmpich_la-dup_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_del_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_copy_fnf.lo CC src/binding/f77/lib_libfmpich_la-dup_comm_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_comm_del_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_comm_copy_fnf.lo CC src/binding/f77/lib_libfmpich_la-dup_win_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_win_del_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_win_copy_fnf.lo CC src/binding/f77/lib_libfmpich_la-dup_type_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_type_del_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_type_copy_fnf.lo CC src/binding/f77/lib_libfmpich_la-statusf2c.lo CC src/binding/f77/lib_libfmpich_la-statusc2f.lo rm -f src/binding/f90/mpifnoext.h sed -e 's/^C/\!/g' -e '/EXTERNAL/d' \ -e '/REAL\*8/d' \ -e '/DOUBLE PRECISION/d' \ -e '/MPI_WTICK/d' src/binding/f77/mpif.h > src/binding/f90/mpifnoext.h cp -p src/env/mpicc.bash src/env/mpicc cp -p src/env/mpif77.bash src/env/mpif77 cp -p src/env/mpif90.bash src/env/mpif90 cp -p src/env/mpicxx.bash src/env/mpicxx CC src/mpi/attr/dup_fn.lo CC src/mpi/attr/attrutil.lo CC src/mpi/coll/allred_group.lo CC src/mpi/coll/barrier_group.lo CC src/mpi/coll/helper_fns.lo CC src/mpi/coll/opsum.lo CC src/mpi/coll/opmax.lo CC src/mpi/coll/opmin.lo CC src/mpi/coll/opband.lo CC src/mpi/coll/opbor.lo CC src/mpi/coll/opbxor.lo CC src/mpi/coll/opland.lo CC src/mpi/coll/oplor.lo CC src/mpi/coll/oplxor.lo CC src/mpi/coll/opprod.lo CC src/mpi/coll/opminloc.lo CC src/mpi/coll/opmaxloc.lo CC src/mpi/coll/opno_op.lo CC src/mpi/coll/opreplace.lo CC src/mpi/coll/nbcutil.lo CC src/mpi/comm/commutil.lo CC src/mpi/datatype/typeutil.lo CC src/mpi/errhan/errutil.lo CC src/mpi/errhan/dynerrutil.lo CC src/mpi/group/grouputil.lo CC src/mpi/info/infoutil.lo CC src/mpi/init/initinfo.lo CC src/mpi/init/async.lo CC src/mpi/pt2pt/bsendutil.lo CC src/mpi/pt2pt/mpir_request.lo CC src/mpi/rma/winutil.lo CC src/mpi/rma/rmatypeutil.lo CC src/mpi/timer/mpidtime.lo CC src/mpi/topo/topoutil.lo CC src/util/dbg/dbg_printf.lo CC src/util/dbg/timelimit.lo CC src/util/dbg/exit.lo CC src/util/instrm/states.lo CC src/util/instrm/instr.lo CC src/util/mem/trmem.lo CC src/util/mem/handlemem.lo CC src/util/mem/safestr.lo CC src/util/mem/argstr.lo CC src/util/mem/strerror.lo CC src/util/msgs/msgprint.lo CC src/util/other/outliers.lo CC src/util/other/assert.lo CC src/util/cvar/mpich_cvars.lo CC src/util/procmap/local_proc.lo CC src/util/thread/mpiu_thread.lo CC src/binding/f77/sendf.lo CC src/binding/f77/recvf.lo CC src/binding/f77/get_countf.lo CC src/binding/f77/bsendf.lo CC src/binding/f77/ssendf.lo CC src/binding/f77/rsendf.lo CC src/binding/f77/bufattachf.lo CC src/binding/f77/bufdetachf.lo CC src/binding/f77/isendf.lo CC src/binding/f77/ibsendf.lo CC src/binding/f77/issendf.lo CC src/binding/f77/irsendf.lo CC src/binding/f77/irecvf.lo CC src/binding/f77/waitf.lo CC src/binding/f77/testf.lo CC src/binding/f77/request_freef.lo CC src/binding/f77/waitanyf.lo CC src/binding/f77/testanyf.lo CC src/binding/f77/waitallf.lo CC src/binding/f77/testallf.lo CC src/binding/f77/waitsomef.lo CC src/binding/f77/testsomef.lo CC src/binding/f77/iprobef.lo CC src/binding/f77/probef.lo CC src/binding/f77/cancelf.lo CC src/binding/f77/testcancelf.lo CC src/binding/f77/send_initf.lo CC src/binding/f77/bsend_initf.lo CC src/binding/f77/ssend_initf.lo CC src/binding/f77/rsend_initf.lo CC src/binding/f77/recv_initf.lo CC src/binding/f77/startf.lo CC src/binding/f77/startallf.lo CC src/binding/f77/sendrecvf.lo CC src/binding/f77/sndrcvrplf.lo CC src/binding/f77/typecontigf.lo CC src/binding/f77/type_vectorf.lo CC src/binding/f77/type_hvectorf.lo CC src/binding/f77/type_indexedf.lo CC src/binding/f77/type_hindexedf.lo CC src/binding/f77/type_structf.lo CC src/binding/f77/type_extentf.lo CC src/binding/f77/type_sizef.lo CC src/binding/f77/type_lbf.lo CC src/binding/f77/type_ubf.lo CC src/binding/f77/type_commitf.lo CC src/binding/f77/type_freef.lo CC src/binding/f77/get_elementsf.lo CC src/binding/f77/packf.lo CC src/binding/f77/unpackf.lo CC src/binding/f77/pack_sizef.lo CC src/binding/f77/barrierf.lo CC src/binding/f77/bcastf.lo CC src/binding/f77/gatherf.lo CC src/binding/f77/gathervf.lo CC src/binding/f77/scatterf.lo CC src/binding/f77/scattervf.lo CC src/binding/f77/allgatherf.lo CC src/binding/f77/allgathervf.lo CC src/binding/f77/alltoallf.lo CC src/binding/f77/alltoallvf.lo CC src/binding/f77/alltoallwf.lo CC src/binding/f77/exscanf.lo CC src/binding/f77/reducef.lo CC src/binding/f77/op_createf.lo CC src/binding/f77/op_freef.lo CC src/binding/f77/allreducef.lo CC src/binding/f77/redscatf.lo CC src/binding/f77/scanf.lo CC src/binding/f77/group_sizef.lo CC src/binding/f77/group_rankf.lo CC src/binding/f77/grouptranksf.lo CC src/binding/f77/group_comparef.lo CC src/binding/f77/comm_groupf.lo CC src/binding/f77/group_unionf.lo CC src/binding/f77/groupinterf.lo CC src/binding/f77/groupdifff.lo CC src/binding/f77/group_inclf.lo CC src/binding/f77/group_exclf.lo CC src/binding/f77/grouprinclf.lo CC src/binding/f77/grouprexclf.lo CC src/binding/f77/group_freef.lo CC src/binding/f77/comm_sizef.lo CC src/binding/f77/comm_rankf.lo CC src/binding/f77/comm_comparef.lo CC src/binding/f77/comm_dupf.lo CC src/binding/f77/comm_dup_with_infof.lo CC src/binding/f77/comm_createf.lo CC src/binding/f77/comm_splitf.lo CC src/binding/f77/comm_freef.lo CC src/binding/f77/commtesticf.lo CC src/binding/f77/commrsizef.lo CC src/binding/f77/commrgroupf.lo CC src/binding/f77/iccreatef.lo CC src/binding/f77/icmergef.lo CC src/binding/f77/keyval_freef.lo CC src/binding/f77/attr_putf.lo CC src/binding/f77/attr_getf.lo CC src/binding/f77/attr_deletef.lo CC src/binding/f77/topo_testf.lo CC src/binding/f77/cart_createf.lo CC src/binding/f77/dims_createf.lo CC src/binding/f77/graph_createf.lo CC src/binding/f77/graphdims_getf.lo CC src/binding/f77/graph_getf.lo CC src/binding/f77/cartdim_getf.lo CC src/binding/f77/cart_getf.lo CC src/binding/f77/cart_rankf.lo CC src/binding/f77/cart_coordsf.lo CC src/binding/f77/grfnbcountf.lo CC src/binding/f77/grfnbrsf.lo CC src/binding/f77/cart_shiftf.lo CC src/binding/f77/cart_subf.lo CC src/binding/f77/cart_mapf.lo CC src/binding/f77/graph_mapf.lo CC src/binding/f77/getpnamef.lo CC src/binding/f77/get_versionf.lo CC src/binding/f77/get_library_versionf.lo CC src/binding/f77/errhcreatef.lo CC src/binding/f77/errhsetf.lo CC src/binding/f77/errhgetf.lo CC src/binding/f77/errhfreef.lo CC src/binding/f77/error_stringf.lo CC src/binding/f77/error_classf.lo CC src/binding/f77/finalizef.lo CC src/binding/f77/initializedf.lo CC src/binding/f77/abortf.lo CC src/binding/f77/close_portf.lo CC src/binding/f77/comm_acceptf.lo CC src/binding/f77/comm_connectf.lo CC src/binding/f77/commdiscf.lo CC src/binding/f77/commparentf.lo CC src/binding/f77/comm_joinf.lo CC src/binding/f77/comm_spawnf.lo CC src/binding/f77/spawnmultf.lo CC src/binding/f77/lookup_namef.lo CC src/binding/f77/open_portf.lo CC src/binding/f77/publish_namef.lo CC src/binding/f77/unpubnamef.lo CC src/binding/f77/comm_set_infof.lo CC src/binding/f77/comm_get_infof.lo CC src/binding/f77/accumulatef.lo CC src/binding/f77/getf.lo CC src/binding/f77/putf.lo CC src/binding/f77/win_completef.lo CC src/binding/f77/win_createf.lo CC src/binding/f77/win_fencef.lo CC src/binding/f77/win_freef.lo CC src/binding/f77/win_get_groupf.lo CC src/binding/f77/win_lockf.lo CC src/binding/f77/win_postf.lo CC src/binding/f77/win_startf.lo CC src/binding/f77/win_testf.lo CC src/binding/f77/win_unlockf.lo CC src/binding/f77/win_waitf.lo CC src/binding/f77/win_allocatef.lo CC src/binding/f77/win_allocate_sharedf.lo CC src/binding/f77/win_shared_queryf.lo CC src/binding/f77/win_create_dynamicf.lo CC src/binding/f77/win_attachf.lo CC src/binding/f77/win_detachf.lo CC src/binding/f77/win_get_infof.lo CC src/binding/f77/win_set_infof.lo CC src/binding/f77/get_accumulatef.lo CC src/binding/f77/fetch_and_opf.lo CC src/binding/f77/compare_and_swapf.lo CC src/binding/f77/rputf.lo CC src/binding/f77/rgetf.lo CC src/binding/f77/raccumulatef.lo CC src/binding/f77/rget_accumulatef.lo CC src/binding/f77/win_lock_allf.lo CC src/binding/f77/win_unlock_allf.lo CC src/binding/f77/win_flushf.lo CC src/binding/f77/win_flush_allf.lo CC src/binding/f77/win_flush_localf.lo CC src/binding/f77/win_flush_local_allf.lo CC src/binding/f77/win_syncf.lo CC src/binding/f77/adderrclassf.lo CC src/binding/f77/adderrcodef.lo CC src/binding/f77/adderrstringf.lo CC src/binding/f77/commcallerrf.lo CC src/binding/f77/commnewkeyf.lo CC src/binding/f77/commdelattrf.lo CC src/binding/f77/commfreekeyf.lo CC src/binding/f77/comm_get_attrf.lo CC src/binding/f77/commgetnamf.lo CC src/binding/f77/comm_set_attrf.lo CC src/binding/f77/comm_set_namef.lo CC src/binding/f77/filecallerrf.lo CC src/binding/f77/greqcompletef.lo CC src/binding/f77/greqstartf.lo CC src/binding/f77/isthrmainf.lo CC src/binding/f77/query_threadf.lo CC src/binding/f77/statgetclf.lo CC src/binding/f77/statsetelf.lo CC src/binding/f77/typenewkeyf.lo CC src/binding/f77/typedelattrf.lo CC src/binding/f77/type_dupf.lo CC src/binding/f77/typefreekeyf.lo CC src/binding/f77/type_get_attrf.lo CC src/binding/f77/typegetcntsf.lo CC src/binding/f77/typegetenvf.lo CC src/binding/f77/typegnamef.lo CC src/binding/f77/typesetattrf.lo CC src/binding/f77/typesetnamef.lo CC src/binding/f77/type_match_sizef.lo CC src/binding/f77/wincallerrf.lo CC src/binding/f77/winnewkeyf.lo CC src/binding/f77/windelattrf.lo CC src/binding/f77/winfreekeyf.lo CC src/binding/f77/win_get_attrf.lo CC src/binding/f77/win_get_namef.lo CC src/binding/f77/win_set_attrf.lo CC src/binding/f77/win_set_namef.lo CC src/binding/f77/alloc_memf.lo CC src/binding/f77/commcreerrf.lo CC src/binding/f77/commgeterrf.lo CC src/binding/f77/commseterrf.lo CC src/binding/f77/filecreerrf.lo CC src/binding/f77/fileseterrf.lo CC src/binding/f77/filegeterrf.lo CC src/binding/f77/finalizedf.lo CC src/binding/f77/free_memf.lo CC src/binding/f77/info_createf.lo CC src/binding/f77/info_deletef.lo CC src/binding/f77/info_dupf.lo CC src/binding/f77/info_freef.lo CC src/binding/f77/info_getf.lo CC src/binding/f77/infognkf.lo CC src/binding/f77/infognthkf.lo CC src/binding/f77/infovallenf.lo CC src/binding/f77/info_setf.lo CC src/binding/f77/pack_externalf.lo CC src/binding/f77/packesizef.lo CC src/binding/f77/reqgetstatf.lo CC src/binding/f77/typedarrayf.lo CC src/binding/f77/typechindf.lo CC src/binding/f77/typechvecf.lo CC src/binding/f77/typecindbf.lo CC src/binding/f77/type_create_hindexed_blockf.lo CC src/binding/f77/typecresizef.lo CC src/binding/f77/typecstructf.lo CC src/binding/f77/typecsubarrf.lo CC src/binding/f77/typegetextentf.lo CC src/binding/f77/typegtextf.lo CC src/binding/f77/unpackextf.lo CC src/binding/f77/wincreerrf.lo CC src/binding/f77/wingeterrf.lo CC src/binding/f77/winseterrf.lo CC src/binding/f77/reduce_localf.lo CC src/binding/f77/op_commutativef.lo CC src/binding/f77/reduce_scatter_blockf.lo CC src/binding/f77/dist_graph_create_adjacentf.lo CC src/binding/f77/dist_graph_createf.lo CC src/binding/f77/dist_graph_neighbors_countf.lo CC src/binding/f77/dist_graph_neighborsf.lo CC src/binding/f77/improbef.lo CC src/binding/f77/imrecvf.lo CC src/binding/f77/mprobef.lo CC src/binding/f77/mrecvf.lo CC src/binding/f77/comm_idupf.lo CC src/binding/f77/ibarrierf.lo CC src/binding/f77/ibcastf.lo CC src/binding/f77/igatherf.lo CC src/binding/f77/igathervf.lo CC src/binding/f77/iscatterf.lo CC src/binding/f77/iscattervf.lo CC src/binding/f77/iallgatherf.lo CC src/binding/f77/iallgathervf.lo CC src/binding/f77/ialltoallf.lo CC src/binding/f77/ialltoallvf.lo CC src/binding/f77/ialltoallwf.lo CC src/binding/f77/ireducef.lo CC src/binding/f77/iallreducef.lo CC src/binding/f77/ireduce_scatterf.lo CC src/binding/f77/ireduce_scatter_blockf.lo CC src/binding/f77/iscanf.lo CC src/binding/f77/iexscanf.lo CC src/binding/f77/ineighbor_allgatherf.lo CC src/binding/f77/ineighbor_allgathervf.lo CC src/binding/f77/ineighbor_alltoallf.lo CC src/binding/f77/ineighbor_alltoallvf.lo CC src/binding/f77/ineighbor_alltoallwf.lo CC src/binding/f77/neighbor_allgatherf.lo CC src/binding/f77/neighbor_allgathervf.lo CC src/binding/f77/neighbor_alltoallf.lo CC src/binding/f77/neighbor_alltoallvf.lo CC src/binding/f77/neighbor_alltoallwf.lo CC src/binding/f77/comm_split_typef.lo CC src/binding/f77/get_elements_xf.lo CC src/binding/f77/status_set_elements_xf.lo CC src/binding/f77/type_get_extent_xf.lo CC src/binding/f77/type_get_true_extent_xf.lo CC src/binding/f77/type_size_xf.lo CC src/binding/f77/comm_create_groupf.lo CC src/binding/f77/comm_group_failedf.lo CC src/binding/f77/comm_remote_group_failedf.lo CC src/binding/f77/comm_reenable_anysourcef.lo CC src/binding/f77/file_openf.lo CC src/binding/f77/file_closef.lo CC src/binding/f77/file_deletef.lo CC src/binding/f77/file_set_sizef.lo CC src/binding/f77/file_preallocatef.lo CC src/binding/f77/file_get_sizef.lo CC src/binding/f77/file_get_groupf.lo CC src/binding/f77/file_get_amodef.lo CC src/binding/f77/file_set_infof.lo CC src/binding/f77/file_get_infof.lo CC src/binding/f77/file_set_viewf.lo CC src/binding/f77/file_get_viewf.lo CC src/binding/f77/file_read_atf.lo CC src/binding/f77/file_read_at_allf.lo CC src/binding/f77/file_write_atf.lo CC src/binding/f77/file_write_at_allf.lo CC src/binding/f77/file_iread_atf.lo CC src/binding/f77/file_iwrite_atf.lo CC src/binding/f77/file_readf.lo CC src/binding/f77/file_read_allf.lo CC src/binding/f77/file_writef.lo CC src/binding/f77/file_write_allf.lo CC src/binding/f77/file_ireadf.lo CC src/binding/f77/file_iwritef.lo CC src/binding/f77/file_seekf.lo CC src/binding/f77/file_get_positionf.lo CC src/binding/f77/file_get_byte_offsetf.lo CC src/binding/f77/file_read_sharedf.lo CC src/binding/f77/file_write_sharedf.lo CC src/binding/f77/file_iread_sharedf.lo CC src/binding/f77/file_iwrite_sharedf.lo CC src/binding/f77/file_read_orderedf.lo CC src/binding/f77/file_write_orderedf.lo CC src/binding/f77/file_seek_sharedf.lo CC src/binding/f77/file_get_position_sharedf.lo CC src/binding/f77/file_read_at_all_beginf.lo CC src/binding/f77/file_read_at_all_endf.lo CC src/binding/f77/file_write_at_all_beginf.lo CC src/binding/f77/file_write_at_all_endf.lo CC src/binding/f77/file_read_all_beginf.lo CC src/binding/f77/file_read_all_endf.lo CC src/binding/f77/file_write_all_beginf.lo CC src/binding/f77/file_write_all_endf.lo CC src/binding/f77/file_read_ordered_beginf.lo CC src/binding/f77/file_read_ordered_endf.lo CC src/binding/f77/file_write_ordered_beginf.lo CC src/binding/f77/file_write_ordered_endf.lo CC src/binding/f77/file_get_type_extentf.lo CC src/binding/f77/register_datarepf.lo CC src/binding/f77/file_set_atomicityf.lo CC src/binding/f77/file_get_atomicityf.lo CC src/binding/f77/file_syncf.lo CC src/binding/f77/initf.lo CC src/binding/f77/initthreadf.lo CC src/binding/f77/pcontrolf.lo CC src/binding/f77/addressf.lo CC src/binding/f77/getaddressf.lo CC src/binding/f77/wtimef.lo CC src/binding/f77/wtickf.lo CC src/binding/f77/keyval_createf.lo CC src/binding/f77/dup_fnf.lo CC src/binding/f77/null_del_fnf.lo CC src/binding/f77/null_copy_fnf.lo CC src/binding/f77/dup_comm_fnf.lo CC src/binding/f77/null_comm_del_fnf.lo CC src/binding/f77/null_comm_copy_fnf.lo CC src/binding/f77/dup_win_fnf.lo CC src/binding/f77/null_win_del_fnf.lo CC src/binding/f77/null_win_copy_fnf.lo CC src/binding/f77/dup_type_fnf.lo CC src/binding/f77/null_type_del_fnf.lo CC src/binding/f77/null_type_copy_fnf.lo CC src/binding/f77/statusf2c.lo CC src/binding/f77/statusc2f.lo CC src/binding/f77/fdebug.lo CC src/binding/f90/create_f90_util.lo CC src/glue/romio/glue_romio.lo CC src/mpid/ch3/src/ch3u_buffer.lo CC src/mpid/ch3/src/ch3u_comm.lo CC src/mpid/ch3/src/ch3u_comm_spawn_multiple.lo CC src/mpid/ch3/src/ch3u_handle_connection.lo CC src/mpid/ch3/src/ch3u_handle_recv_pkt.lo CC src/mpid/ch3/src/ch3u_handle_recv_req.lo CC src/mpid/ch3/src/ch3u_handle_send_req.lo CC src/mpid/ch3/src/ch3u_port.lo CC src/mpid/ch3/src/ch3u_recvq.lo CC src/mpid/ch3/src/ch3u_request.lo CC src/mpid/ch3/src/ch3u_rma_acc_ops.lo CC src/mpid/ch3/src/ch3u_rma_ops.lo CC src/mpid/ch3/src/ch3u_rma_reqops.lo CC src/mpid/ch3/src/ch3u_rma_sync.lo CC src/mpid/ch3/src/ch3u_rndv.lo CC src/mpid/ch3/src/ch3u_eager.lo CC src/mpid/ch3/src/ch3u_eagersync.lo CC src/mpid/ch3/src/ch3u_win_fns.lo CC src/mpid/ch3/src/mpid_abort.lo CC src/mpid/ch3/src/mpid_cancel_recv.lo CC src/mpid/ch3/src/mpid_cancel_send.lo CC src/mpid/ch3/src/mpid_comm_disconnect.lo CC src/mpid/ch3/src/mpid_comm_group_failed.lo CC src/mpid/ch3/src/mpid_comm_reenable_anysource.lo CC src/mpid/ch3/src/mpid_comm_spawn_multiple.lo CC src/mpid/ch3/src/mpid_finalize.lo CC src/mpid/ch3/src/mpid_get_universe_size.lo CC src/mpid/ch3/src/mpid_getpname.lo CC src/mpid/ch3/src/mpid_improbe.lo CC src/mpid/ch3/src/mpid_imrecv.lo CC src/mpid/ch3/src/mpid_init.lo CC src/mpid/ch3/src/mpid_iprobe.lo CC src/mpid/ch3/src/mpid_irecv.lo CC src/mpid/ch3/src/mpid_irsend.lo CC src/mpid/ch3/src/mpid_isend.lo CC src/mpid/ch3/src/mpid_issend.lo CC src/mpid/ch3/src/mpid_mprobe.lo CC src/mpid/ch3/src/mpid_mrecv.lo CC src/mpid/ch3/src/mpid_port.lo CC src/mpid/ch3/src/mpid_probe.lo CC src/mpid/ch3/src/mpid_recv.lo CC src/mpid/ch3/src/mpid_rsend.lo CC src/mpid/ch3/src/mpid_send.lo CC src/mpid/ch3/src/mpid_ssend.lo CC src/mpid/ch3/src/mpid_startall.lo CC src/mpid/ch3/src/mpid_vc.lo CC src/mpid/ch3/src/mpid_rma.lo CC src/mpid/ch3/src/mpidi_isend_self.lo CC src/mpid/ch3/src/mpidi_pg.lo CC src/mpid/ch3/src/mpidi_printf.lo CC src/mpid/ch3/util/sock/ch3u_init_sock.lo CC src/mpid/ch3/util/sock/ch3u_connect_sock.lo CC src/mpid/ch3/util/sock/ch3u_getinterfaces.lo CC src/mpid/ch3/channels/sock/src/ch3_finalize.lo CC src/mpid/ch3/channels/sock/src/ch3_init.lo CC src/mpid/ch3/channels/sock/src/ch3_isend.lo CC src/mpid/ch3/channels/sock/src/ch3_isendv.lo CC src/mpid/ch3/channels/sock/src/ch3_istartmsg.lo CC src/mpid/ch3/channels/sock/src/ch3_istartmsgv.lo CC src/mpid/ch3/channels/sock/src/ch3_progress.lo CC src/mpid/ch3/channels/sock/src/ch3_win_fns.lo CC src/mpid/common/datatype/dataloop/darray_support.lo CC src/mpid/common/datatype/dataloop/dataloop.lo CC src/mpid/common/datatype/dataloop/dataloop_create.lo CC src/mpid/common/datatype/dataloop/dataloop_create_blockindexed.lo CC src/mpid/common/datatype/dataloop/dataloop_create_contig.lo CC src/mpid/common/datatype/dataloop/dataloop_create_indexed.lo CC src/mpid/common/datatype/dataloop/dataloop_create_pairtype.lo CC src/mpid/common/datatype/dataloop/dataloop_create_struct.lo CC src/mpid/common/datatype/dataloop/dataloop_create_vector.lo CC src/mpid/common/datatype/dataloop/segment.lo CC src/mpid/common/datatype/dataloop/segment_count.lo CC src/mpid/common/datatype/dataloop/segment_flatten.lo CC src/mpid/common/datatype/dataloop/segment_packunpack.lo CC src/mpid/common/datatype/dataloop/subarray_support.lo CC src/mpid/common/datatype/mpid_contents_support.lo CC src/mpid/common/datatype/mpid_datatype_contents.lo CC src/mpid/common/datatype/mpid_datatype_free.lo CC src/mpid/common/datatype/mpid_ext32_datatype.lo CC src/mpid/common/datatype/mpid_ext32_segment.lo CC src/mpid/common/datatype/mpid_segment.lo CC src/mpid/common/datatype/mpid_type_blockindexed.lo CC src/mpid/common/datatype/mpid_type_commit.lo CC src/mpid/common/datatype/mpid_type_contiguous.lo CC src/mpid/common/datatype/mpid_type_create_pairtype.lo CC src/mpid/common/datatype/mpid_type_create_resized.lo CC src/mpid/common/datatype/mpid_type_debug.lo CC src/mpid/common/datatype/mpid_type_dup.lo CC src/mpid/common/datatype/mpid_type_get_contents.lo CC src/mpid/common/datatype/mpid_type_get_envelope.lo CC src/mpid/common/datatype/mpid_type_indexed.lo CC src/mpid/common/datatype/mpid_type_struct.lo CC src/mpid/common/datatype/mpid_type_vector.lo CC src/mpid/common/datatype/mpid_type_zerolen.lo CC src/mpid/common/datatype/mpir_type_flatten.lo CC src/mpid/common/sched/mpid_sched.lo CC src/mpid/common/sock/poll/sock.lo CC src/mpid/common/thread/mpid_thread.lo CC src/mpi_t/mpit.lo CC src/nameserv/pmi/pmi_nameserv.lo CC src/pmi/simple/simple_pmiutil.lo CC src/pmi/simple/simple_pmi.lo CC src/mpi/misc/getpname.lo CC src/mpi/misc/pcontrol.lo CC src/mpi/misc/version.lo CC src/mpi/misc/library_version.lo CC src/mpi/spawn/comm_disconnect.lo CC src/mpi/spawn/comm_get_parent.lo CC src/mpi/spawn/comm_join.lo CC src/mpi/spawn/comm_spawn.lo CC src/mpi/spawn/comm_spawn_multiple.lo CC src/mpi/spawn/lookup_name.lo CC src/mpi/spawn/publish_name.lo CC src/mpi/spawn/unpublish_name.lo CC src/mpi/spawn/open_port.lo CC src/mpi/spawn/close_port.lo CC src/mpi/spawn/comm_connect.lo CC src/mpi/spawn/comm_accept.lo CC src/mutex/mutex_create.lo CC src/mutex/mutex_free.lo CC src/mutex/mutex_lock.lo CC src/mutex/mutex_unlock.lo CXX src/binding/cxx/initcxx.lo CCLD lib/libfmpich.la MOD src/binding/f90/mpi_constants.mod-stamp MOD src/binding/f90/mpi_sizeofs.mod-stamp CC src/env/mpichversion.o CC src/env/mpivars.o GEN lib/libmpich.la MOD src/binding/f90/mpi_base.mod-stamp MOD src/binding/f90/mpi.mod-stamp FCLD lib/libmpichf90.la CXXLD lib/libmpichcxx.la CCLD src/env/mpivars CCLD src/env/mpichversion make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' Making all in examples make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' CC cpi.o CCLD cpi make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1 && /usr/bin/make install stdout: /usr/bin/make install-recursive make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' Making install in /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' /bin/mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libmpl.la '/home/lucasogura/petsc/arch-linux2-c-opt/lib' libtool: install: /usr/bin/install -c .libs/libmpl.so.1.0.0 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.so.1.0.0 libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpl.so.1.0.0 libmpl.so.1 || { rm -f libmpl.so.1 && ln -s libmpl.so.1.0.0 libmpl.so.1; }; }) libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpl.so.1.0.0 libmpl.so || { rm -f libmpl.so && ln -s libmpl.so.1.0.0 libmpl.so; }; }) libtool: install: /usr/bin/install -c .libs/libmpl.lai /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.la libtool: install: /usr/bin/install -c .libs/libmpl.a /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.a libtool: install: chmod 644 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.a libtool: install: ranlib /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.a libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/sbin" ldconfig -n /home/lucasogura/petsc/arch-linux2-c-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/lucasogura/petsc/arch-linux2-c-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' Making install in /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' Making install in src make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' /bin/mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/lib' /bin/bash ../libtool --mode=install /usr/bin/install -c libopa.la '/home/lucasogura/petsc/arch-linux2-c-opt/lib' libtool: install: /usr/bin/install -c .libs/libopa.so.1.0.0 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libopa.so.1.0.0 libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libopa.so.1.0.0 libopa.so.1 || { rm -f libopa.so.1 && ln -s libopa.so.1.0.0 libopa.so.1; }; }) libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libopa.so.1.0.0 libopa.so || { rm -f libopa.so && ln -s libopa.so.1.0.0 libopa.so; }; }) libtool: install: /usr/bin/install -c .libs/libopa.lai /home/lucasogura/petsc/arch-linux2-c-opt/lib/libopa.la libtool: install: /usr/bin/install -c .libs/libopa.a /home/lucasogura/petsc/arch-linux2-c-opt/lib/libopa.a libtool: install: chmod 644 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libopa.a libtool: install: ranlib /home/lucasogura/petsc/arch-linux2-c-opt/lib/libopa.a libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/sbin" ldconfig -n /home/lucasogura/petsc/arch-linux2-c-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/lucasogura/petsc/arch-linux2-c-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/include' /usr/bin/install -c -m 644 opa_primitives.h opa_queue.h opa_util.h '/home/lucasogura/petsc/arch-linux2-c-opt/include' /bin/mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/include' /bin/mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/include/primitives' /usr/bin/install -c -m 644 primitives/opa_by_lock.h primitives/opa_emulated.h primitives/opa_gcc_ia64.h primitives/opa_gcc_intel_32_64.h primitives/opa_gcc_intel_32_64_barrier.h primitives/opa_gcc_intel_32_64_ops.h primitives/opa_gcc_intel_32_64_p3.h primitives/opa_gcc_intel_32_64_p3barrier.h primitives/opa_gcc_intrinsics.h primitives/opa_gcc_ppc.h primitives/opa_gcc_sicortex.h primitives/opa_nt_intrinsics.h primitives/opa_sun_atomic_ops.h primitives/opa_unsafe.h '/home/lucasogura/petsc/arch-linux2-c-opt/include/primitives' /bin/mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/include' /usr/bin/install -c -m 644 opa_config.h '/home/lucasogura/petsc/arch-linux2-c-opt/include' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' Making install in test make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/lib/pkgconfig' /usr/bin/install -c -m 644 openpa.pc '/home/lucasogura/petsc/arch-linux2-c-opt/lib/pkgconfig' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' Making install in src/mpi/romio make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/include' /usr/bin/install -c -m 644 include/mpio.h include/mpiof.h '/home/lucasogura/petsc/arch-linux2-c-opt/include' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' Making install in src/pm/hydra make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' Making install in ../../mpl make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' /bin/mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libmpl.la '/home/lucasogura/petsc/arch-linux2-c-opt/lib' libtool: install: /usr/bin/install -c .libs/libmpl.so.1.0.0 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.so.1.0.0 libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpl.so.1.0.0 libmpl.so.1 || { rm -f libmpl.so.1 && ln -s libmpl.so.1.0.0 libmpl.so.1; }; }) libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpl.so.1.0.0 libmpl.so || { rm -f libmpl.so && ln -s libmpl.so.1.0.0 libmpl.so; }; }) libtool: install: /usr/bin/install -c .libs/libmpl.lai /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.la libtool: install: /usr/bin/install -c .libs/libmpl.a /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.a libtool: install: chmod 644 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.a libtool: install: ranlib /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpl.a libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/sbin" ldconfig -n /home/lucasogura/petsc/arch-linux2-c-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/lucasogura/petsc/arch-linux2-c-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' Making install in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in src make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' /usr/bin/make install-exec-hook make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[6]: Nothing to be done for `install-exec-hook'. make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making install in include make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in . make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra '/home/lucasogura/petsc/arch-linux2-c-opt/bin' libtool: install: /usr/bin/install -c .libs/hydra_persist /home/lucasogura/petsc/arch-linux2-c-opt/bin/hydra_persist libtool: install: /usr/bin/install -c .libs/hydra_nameserver /home/lucasogura/petsc/arch-linux2-c-opt/bin/hydra_nameserver libtool: install: /usr/bin/install -c .libs/hydra_pmi_proxy /home/lucasogura/petsc/arch-linux2-c-opt/bin/hydra_pmi_proxy libtool: install: /usr/bin/install -c .libs/mpiexec.hydra /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpiexec.hydra /usr/bin/make install-exec-hook make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' if [ -x /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpiexec.hydra ] ; then \ cd /home/lucasogura/petsc/arch-linux2-c-opt/bin && ln -f -s mpiexec.hydra mpiexec ; \ cd /home/lucasogura/petsc/arch-linux2-c-opt/bin && ln -f -s mpiexec.hydra mpirun ; \ fi make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' Making install in . make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c lib/libmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la '/home/lucasogura/petsc/arch-linux2-c-opt/lib' libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1; /bin/bash /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/libtool --silent --tag F77 --mode=relink gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -O2 -L/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl -L/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src -version-info 12:0:0 -o lib/libmpich.la -rpath /home/lucasogura/petsc/arch-linux2-c-opt/lib src/mpi/attr/attrutil.lo src/mpi/attr/dup_fn.lo src/mpi/coll/allred_group.lo src/mpi/coll/barrier_group.lo src/mpi/coll/helper_fns.lo src/mpi/coll/opsum.lo src/mpi/coll/opmax.lo src/mpi/coll/opmin.lo src/mpi/coll/opband.lo src/mpi/coll/opbor.lo src/mpi/coll/opbxor.lo src/mpi/coll/opland.lo src/mpi/coll/oplor.lo src/mpi/coll/oplxor.lo src/mpi/coll/opprod.lo src/mpi/coll/opminloc.lo src/mpi/coll/opmaxloc.lo src/mpi/coll/opno_op.lo src/mpi/coll/opreplace.lo src/mpi/coll/nbcutil.lo src/mpi/comm/commutil.lo src/mpi/datatype/typeutil.lo src/mpi/errhan/errutil.lo src/mpi/errhan/dynerrutil.lo src/mpi/group/grouputil.lo src/mpi/info/infoutil.lo src/mpi/init/initinfo.lo src/mpi/init/async.lo src/mpi/pt2pt/bsendutil.lo src/mpi/pt2pt/mpir_request.lo src/mpi/rma/winutil.lo src/mpi/rma/rmatypeutil.lo src/mpi/timer/mpidtime.lo src/mpi/topo/topoutil.lo src/util/dbg/dbg_printf.lo src/util/dbg/timelimit.lo src/util/dbg/exit.lo src/util/instrm/states.lo src/util/instrm/instr.lo src/util/mem/trmem.lo src/util/mem/handlemem.lo src/util/mem/safestr.lo src/util/mem/argstr.lo src/util/mem/strerror.lo src/util/msgs/msgprint.lo src/util/other/outliers.lo src/util/other/assert.lo src/util/cvar/mpich_cvars.lo src/util/procmap/local_proc.lo src/util/thread/mpiu_thread.lo src/binding/f77/sendf.lo src/binding/f77/recvf.lo src/binding/f77/get_countf.lo src/binding/f77/bsendf.lo src/binding/f77/ssendf.lo src/binding/f77/rsendf.lo src/binding/f77/bufattachf.lo src/binding/f77/bufdetachf.lo src/binding/f77/isendf.lo src/binding/f77/ibsendf.lo src/binding/f77/issendf.lo src/binding/f77/irsendf.lo src/binding/f77/irecvf.lo src/binding/f77/waitf.lo src/binding/f77/testf.lo src/binding/f77/request_freef.lo src/binding/f77/waitanyf.lo src/binding/f77/testanyf.lo src/binding/f77/waitallf.lo src/binding/f77/testallf.lo src/binding/f77/waitsomef.lo src/binding/f77/testsomef.lo src/binding/f77/iprobef.lo src/binding/f77/probef.lo src/binding/f77/cancelf.lo src/binding/f77/testcancelf.lo src/binding/f77/send_initf.lo src/binding/f77/bsend_initf.lo src/binding/f77/ssend_initf.lo src/binding/f77/rsend_initf.lo src/binding/f77/recv_initf.lo src/binding/f77/startf.lo src/binding/f77/startallf.lo src/binding/f77/sendrecvf.lo src/binding/f77/sndrcvrplf.lo src/binding/f77/typecontigf.lo src/binding/f77/type_vectorf.lo src/binding/f77/type_hvectorf.lo src/binding/f77/type_indexedf.lo src/binding/f77/type_hindexedf.lo src/binding/f77/type_structf.lo src/binding/f77/type_extentf.lo src/binding/f77/type_sizef.lo src/binding/f77/type_lbf.lo src/binding/f77/type_ubf.lo src/binding/f77/type_commitf.lo src/binding/f77/type_freef.lo src/binding/f77/get_elementsf.lo src/binding/f77/packf.lo src/binding/f77/unpackf.lo src/binding/f77/pack_sizef.lo src/binding/f77/barrierf.lo src/binding/f77/bcastf.lo src/binding/f77/gatherf.lo src/binding/f77/gathervf.lo src/binding/f77/scatterf.lo src/binding/f77/scattervf.lo src/binding/f77/allgatherf.lo src/binding/f77/allgathervf.lo src/binding/f77/alltoallf.lo src/binding/f77/alltoallvf.lo src/binding/f77/alltoallwf.lo src/binding/f77/exscanf.lo src/binding/f77/reducef.lo src/binding/f77/op_createf.lo src/binding/f77/op_freef.lo src/binding/f77/allreducef.lo src/binding/f77/redscatf.lo src/binding/f77/scanf.lo src/binding/f77/group_sizef.lo src/binding/f77/group_rankf.lo src/binding/f77/grouptranksf.lo src/binding/f77/group_comparef.lo src/binding/f77/comm_groupf.lo src/binding/f77/group_unionf.lo src/binding/f77/groupinterf.lo src/binding/f77/groupdifff.lo src/binding/f77/group_inclf.lo src/binding/f77/group_exclf.lo src/binding/f77/grouprinclf.lo src/binding/f77/grouprexclf.lo src/binding/f77/group_freef.lo src/binding/f77/comm_sizef.lo src/binding/f77/comm_rankf.lo src/binding/f77/comm_comparef.lo src/binding/f77/comm_dupf.lo src/binding/f77/comm_dup_with_infof.lo src/binding/f77/comm_createf.lo src/binding/f77/comm_splitf.lo src/binding/f77/comm_freef.lo src/binding/f77/commtesticf.lo src/binding/f77/commrsizef.lo src/binding/f77/commrgroupf.lo src/binding/f77/iccreatef.lo src/binding/f77/icmergef.lo src/binding/f77/keyval_freef.lo src/binding/f77/attr_putf.lo src/binding/f77/attr_getf.lo src/binding/f77/attr_deletef.lo src/binding/f77/topo_testf.lo src/binding/f77/cart_createf.lo src/binding/f77/dims_createf.lo src/binding/f77/graph_createf.lo src/binding/f77/graphdims_getf.lo src/binding/f77/graph_getf.lo src/binding/f77/cartdim_getf.lo src/binding/f77/cart_getf.lo src/binding/f77/cart_rankf.lo src/binding/f77/cart_coordsf.lo src/binding/f77/grfnbcountf.lo src/binding/f77/grfnbrsf.lo src/binding/f77/cart_shiftf.lo src/binding/f77/cart_subf.lo src/binding/f77/cart_mapf.lo src/binding/f77/graph_mapf.lo src/binding/f77/getpnamef.lo src/binding/f77/get_versionf.lo src/binding/f77/get_library_versionf.lo src/binding/f77/errhcreatef.lo src/binding/f77/errhsetf.lo src/binding/f77/errhgetf.lo src/binding/f77/errhfreef.lo src/binding/f77/error_stringf.lo src/binding/f77/error_classf.lo src/binding/f77/finalizef.lo src/binding/f77/initializedf.lo src/binding/f77/abortf.lo src/binding/f77/close_portf.lo src/binding/f77/comm_acceptf.lo src/binding/f77/comm_connectf.lo src/binding/f77/commdiscf.lo src/binding/f77/commparentf.lo src/binding/f77/comm_joinf.lo src/binding/f77/comm_spawnf.lo src/binding/f77/spawnmultf.lo src/binding/f77/lookup_namef.lo src/binding/f77/open_portf.lo src/binding/f77/publish_namef.lo src/binding/f77/unpubnamef.lo src/binding/f77/comm_set_infof.lo src/binding/f77/comm_get_infof.lo src/binding/f77/accumulatef.lo src/binding/f77/getf.lo src/binding/f77/putf.lo src/binding/f77/win_completef.lo src/binding/f77/win_createf.lo src/binding/f77/win_fencef.lo src/binding/f77/win_freef.lo src/binding/f77/win_get_groupf.lo src/binding/f77/win_lockf.lo src/binding/f77/win_postf.lo src/binding/f77/win_startf.lo src/binding/f77/win_testf.lo src/binding/f77/win_unlockf.lo src/binding/f77/win_waitf.lo src/binding/f77/win_allocatef.lo src/binding/f77/win_allocate_sharedf.lo src/binding/f77/win_shared_queryf.lo src/binding/f77/win_create_dynamicf.lo src/binding/f77/win_attachf.lo src/binding/f77/win_detachf.lo src/binding/f77/win_get_infof.lo src/binding/f77/win_set_infof.lo src/binding/f77/get_accumulatef.lo src/binding/f77/fetch_and_opf.lo src/binding/f77/compare_and_swapf.lo src/binding/f77/rputf.lo src/binding/f77/rgetf.lo src/binding/f77/raccumulatef.lo src/binding/f77/rget_accumulatef.lo src/binding/f77/win_lock_allf.lo src/binding/f77/win_unlock_allf.lo src/binding/f77/win_flushf.lo src/binding/f77/win_flush_allf.lo src/binding/f77/win_flush_localf.lo src/binding/f77/win_flush_local_allf.lo src/binding/f77/win_syncf.lo src/binding/f77/adderrclassf.lo src/binding/f77/adderrcodef.lo src/binding/f77/adderrstringf.lo src/binding/f77/commcallerrf.lo src/binding/f77/commnewkeyf.lo src/binding/f77/commdelattrf.lo src/binding/f77/commfreekeyf.lo src/binding/f77/comm_get_attrf.lo src/binding/f77/commgetnamf.lo src/binding/f77/comm_set_attrf.lo src/binding/f77/comm_set_namef.lo src/binding/f77/filecallerrf.lo src/binding/f77/greqcompletef.lo src/binding/f77/greqstartf.lo src/binding/f77/isthrmainf.lo src/binding/f77/query_threadf.lo src/binding/f77/statgetclf.lo src/binding/f77/statsetelf.lo src/binding/f77/typenewkeyf.lo src/binding/f77/typedelattrf.lo src/binding/f77/type_dupf.lo src/binding/f77/typefreekeyf.lo src/binding/f77/type_get_attrf.lo src/binding/f77/typegetcntsf.lo src/binding/f77/typegetenvf.lo src/binding/f77/typegnamef.lo src/binding/f77/typesetattrf.lo src/binding/f77/typesetnamef.lo src/binding/f77/type_match_sizef.lo src/binding/f77/wincallerrf.lo src/binding/f77/winnewkeyf.lo src/binding/f77/windelattrf.lo src/binding/f77/winfreekeyf.lo src/binding/f77/win_get_attrf.lo src/binding/f77/win_get_namef.lo src/binding/f77/win_set_attrf.lo src/binding/f77/win_set_namef.lo src/binding/f77/alloc_memf.lo src/binding/f77/commcreerrf.lo src/binding/f77/commgeterrf.lo src/binding/f77/commseterrf.lo src/binding/f77/filecreerrf.lo src/binding/f77/filegeterrf.lo src/binding/f77/fileseterrf.lo src/binding/f77/finalizedf.lo src/binding/f77/free_memf.lo src/binding/f77/info_createf.lo src/binding/f77/info_deletef.lo src/binding/f77/info_dupf.lo src/binding/f77/info_freef.lo src/binding/f77/info_getf.lo src/binding/f77/infognkf.lo src/binding/f77/infognthkf.lo src/binding/f77/infovallenf.lo src/binding/f77/info_setf.lo src/binding/f77/pack_externalf.lo src/binding/f77/packesizef.lo src/binding/f77/reqgetstatf.lo src/binding/f77/typedarrayf.lo src/binding/f77/typechindf.lo src/binding/f77/typechvecf.lo src/binding/f77/typecindbf.lo src/binding/f77/type_create_hindexed_blockf.lo src/binding/f77/typecresizef.lo src/binding/f77/typecstructf.lo src/binding/f77/typecsubarrf.lo src/binding/f77/typegetextentf.lo src/binding/f77/typegtextf.lo src/binding/f77/unpackextf.lo src/binding/f77/wincreerrf.lo src/binding/f77/wingeterrf.lo src/binding/f77/winseterrf.lo src/binding/f77/reduce_localf.lo src/binding/f77/op_commutativef.lo src/binding/f77/reduce_scatter_blockf.lo src/binding/f77/dist_graph_create_adjacentf.lo src/binding/f77/dist_graph_createf.lo src/binding/f77/dist_graph_neighbors_countf.lo src/binding/f77/dist_graph_neighborsf.lo src/binding/f77/improbef.lo src/binding/f77/imrecvf.lo src/binding/f77/mprobef.lo src/binding/f77/mrecvf.lo src/binding/f77/comm_idupf.lo src/binding/f77/ibarrierf.lo src/binding/f77/ibcastf.lo src/binding/f77/igatherf.lo src/binding/f77/igathervf.lo src/binding/f77/iscatterf.lo src/binding/f77/iscattervf.lo src/binding/f77/iallgatherf.lo src/binding/f77/iallgathervf.lo src/binding/f77/ialltoallf.lo src/binding/f77/ialltoallvf.lo src/binding/f77/ialltoallwf.lo src/binding/f77/ireducef.lo src/binding/f77/iallreducef.lo src/binding/f77/ireduce_scatterf.lo src/binding/f77/ireduce_scatter_blockf.lo src/binding/f77/iscanf.lo src/binding/f77/iexscanf.lo src/binding/f77/ineighbor_allgatherf.lo src/binding/f77/ineighbor_allgathervf.lo src/binding/f77/ineighbor_alltoallf.lo src/binding/f77/ineighbor_alltoallvf.lo src/binding/f77/ineighbor_alltoallwf.lo src/binding/f77/neighbor_allgatherf.lo src/binding/f77/neighbor_allgathervf.lo src/binding/f77/neighbor_alltoallf.lo src/binding/f77/neighbor_alltoallvf.lo src/binding/f77/neighbor_alltoallwf.lo src/binding/f77/comm_split_typef.lo src/binding/f77/get_elements_xf.lo src/binding/f77/status_set_elements_xf.lo src/binding/f77/type_get_extent_xf.lo src/binding/f77/type_get_true_extent_xf.lo src/binding/f77/type_size_xf.lo src/binding/f77/comm_create_groupf.lo src/binding/f77/comm_group_failedf.lo src/binding/f77/comm_remote_group_failedf.lo src/binding/f77/comm_reenable_anysourcef.lo src/binding/f77/file_openf.lo src/binding/f77/file_closef.lo src/binding/f77/file_deletef.lo src/binding/f77/file_set_sizef.lo src/binding/f77/file_preallocatef.lo src/binding/f77/file_get_sizef.lo src/binding/f77/file_get_groupf.lo src/binding/f77/file_get_amodef.lo src/binding/f77/file_set_infof.lo src/binding/f77/file_get_infof.lo src/binding/f77/file_set_viewf.lo src/binding/f77/file_get_viewf.lo src/binding/f77/file_read_atf.lo src/binding/f77/file_read_at_allf.lo src/binding/f77/file_write_atf.lo src/binding/f77/file_write_at_allf.lo src/binding/f77/file_iread_atf.lo src/binding/f77/file_iwrite_atf.lo src/binding/f77/file_readf.lo src/binding/f77/file_read_allf.lo src/binding/f77/file_writef.lo src/binding/f77/file_write_allf.lo src/binding/f77/file_ireadf.lo src/binding/f77/file_iwritef.lo src/binding/f77/file_seekf.lo src/binding/f77/file_get_positionf.lo src/binding/f77/file_get_byte_offsetf.lo src/binding/f77/file_read_sharedf.lo src/binding/f77/file_write_sharedf.lo src/binding/f77/file_iread_sharedf.lo src/binding/f77/file_iwrite_sharedf.lo src/binding/f77/file_read_orderedf.lo src/binding/f77/file_write_orderedf.lo src/binding/f77/file_seek_sharedf.lo src/binding/f77/file_get_position_sharedf.lo src/binding/f77/file_read_at_all_beginf.lo src/binding/f77/file_read_at_all_endf.lo src/binding/f77/file_write_at_all_beginf.lo src/binding/f77/file_write_at_all_endf.lo src/binding/f77/file_read_all_beginf.lo src/binding/f77/file_read_all_endf.lo src/binding/f77/file_write_all_beginf.lo src/binding/f77/file_write_all_endf.lo src/binding/f77/file_read_ordered_beginf.lo src/binding/f77/file_read_ordered_endf.lo src/binding/f77/file_write_ordered_beginf.lo src/binding/f77/file_write_ordered_endf.lo src/binding/f77/file_get_type_extentf.lo src/binding/f77/register_datarepf.lo src/binding/f77/file_set_atomicityf.lo src/binding/f77/file_get_atomicityf.lo src/binding/f77/file_syncf.lo src/binding/f77/initf.lo src/binding/f77/initthreadf.lo src/binding/f77/pcontrolf.lo src/binding/f77/addressf.lo src/binding/f77/getaddressf.lo src/binding/f77/wtimef.lo src/binding/f77/wtickf.lo src/binding/f77/keyval_createf.lo src/binding/f77/dup_fnf.lo src/binding/f77/null_del_fnf.lo src/binding/f77/null_copy_fnf.lo src/binding/f77/dup_comm_fnf.lo src/binding/f77/null_comm_del_fnf.lo src/binding/f77/null_comm_copy_fnf.lo src/binding/f77/dup_win_fnf.lo src/binding/f77/null_win_del_fnf.lo src/binding/f77/null_win_copy_fnf.lo src/binding/f77/dup_type_fnf.lo src/binding/f77/null_type_del_fnf.lo src/binding/f77/null_type_copy_fnf.lo src/binding/f77/statusf2c.lo src/binding/f77/statusc2f.lo src/binding/f77/fdebug.lo src/binding/f90/create_f90_util.lo src/glue/romio/glue_romio.lo src/mpid/ch3/src/ch3u_buffer.lo src/mpid/ch3/src/ch3u_comm.lo src/mpid/ch3/src/ch3u_comm_spawn_multiple.lo src/mpid/ch3/src/ch3u_handle_connection.lo src/mpid/ch3/src/ch3u_handle_recv_pkt.lo src/mpid/ch3/src/ch3u_handle_recv_req.lo src/mpid/ch3/src/ch3u_handle_send_req.lo src/mpid/ch3/src/ch3u_port.lo src/mpid/ch3/src/ch3u_recvq.lo src/mpid/ch3/src/ch3u_request.lo src/mpid/ch3/src/ch3u_rma_acc_ops.lo src/mpid/ch3/src/ch3u_rma_ops.lo src/mpid/ch3/src/ch3u_rma_reqops.lo src/mpid/ch3/src/ch3u_rma_sync.lo src/mpid/ch3/src/ch3u_rndv.lo src/mpid/ch3/src/ch3u_eager.lo src/mpid/ch3/src/ch3u_eagersync.lo src/mpid/ch3/src/ch3u_win_fns.lo src/mpid/ch3/src/mpid_abort.lo src/mpid/ch3/src/mpid_cancel_recv.lo src/mpid/ch3/src/mpid_cancel_send.lo src/mpid/ch3/src/mpid_comm_disconnect.lo src/mpid/ch3/src/mpid_comm_group_failed.lo src/mpid/ch3/src/mpid_comm_reenable_anysource.lo src/mpid/ch3/src/mpid_comm_spawn_multiple.lo src/mpid/ch3/src/mpid_finalize.lo src/mpid/ch3/src/mpid_get_universe_size.lo src/mpid/ch3/src/mpid_getpname.lo src/mpid/ch3/src/mpid_improbe.lo src/mpid/ch3/src/mpid_imrecv.lo src/mpid/ch3/src/mpid_init.lo src/mpid/ch3/src/mpid_iprobe.lo src/mpid/ch3/src/mpid_irecv.lo src/mpid/ch3/src/mpid_irsend.lo src/mpid/ch3/src/mpid_isend.lo src/mpid/ch3/src/mpid_issend.lo src/mpid/ch3/src/mpid_mprobe.lo src/mpid/ch3/src/mpid_mrecv.lo src/mpid/ch3/src/mpid_port.lo src/mpid/ch3/src/mpid_probe.lo src/mpid/ch3/src/mpid_recv.lo src/mpid/ch3/src/mpid_rsend.lo src/mpid/ch3/src/mpid_send.lo src/mpid/ch3/src/mpid_ssend.lo src/mpid/ch3/src/mpid_startall.lo src/mpid/ch3/src/mpid_vc.lo src/mpid/ch3/src/mpid_rma.lo src/mpid/ch3/src/mpidi_isend_self.lo src/mpid/ch3/src/mpidi_pg.lo src/mpid/ch3/src/mpidi_printf.lo src/mpid/ch3/util/sock/ch3u_init_sock.lo src/mpid/ch3/util/sock/ch3u_connect_sock.lo src/mpid/ch3/util/sock/ch3u_getinterfaces.lo src/mpid/ch3/channels/sock/src/ch3_finalize.lo src/mpid/ch3/channels/sock/src/ch3_init.lo src/mpid/ch3/channels/sock/src/ch3_isend.lo src/mpid/ch3/channels/sock/src/ch3_isendv.lo src/mpid/ch3/channels/sock/src/ch3_istartmsg.lo src/mpid/ch3/channels/sock/src/ch3_istartmsgv.lo src/mpid/ch3/channels/sock/src/ch3_progress.lo src/mpid/ch3/channels/sock/src/ch3_win_fns.lo src/mpid/common/datatype/dataloop/darray_support.lo src/mpid/common/datatype/dataloop/dataloop.lo src/mpid/common/datatype/dataloop/dataloop_create.lo src/mpid/common/datatype/dataloop/dataloop_create_blockindexed.lo src/mpid/common/datatype/dataloop/dataloop_create_contig.lo src/mpid/common/datatype/dataloop/dataloop_create_indexed.lo src/mpid/common/datatype/dataloop/dataloop_create_pairtype.lo src/mpid/common/datatype/dataloop/dataloop_create_struct.lo src/mpid/common/datatype/dataloop/dataloop_create_vector.lo src/mpid/common/datatype/dataloop/segment.lo src/mpid/common/datatype/dataloop/segment_count.lo src/mpid/common/datatype/dataloop/segment_flatten.lo src/mpid/common/datatype/dataloop/segment_packunpack.lo src/mpid/common/datatype/dataloop/subarray_support.lo src/mpid/common/datatype/mpid_contents_support.lo src/mpid/common/datatype/mpid_datatype_contents.lo src/mpid/common/datatype/mpid_datatype_free.lo src/mpid/common/datatype/mpid_ext32_datatype.lo src/mpid/common/datatype/mpid_ext32_segment.lo src/mpid/common/datatype/mpid_segment.lo src/mpid/common/datatype/mpid_type_blockindexed.lo src/mpid/common/datatype/mpid_type_commit.lo src/mpid/common/datatype/mpid_type_contiguous.lo src/mpid/common/datatype/mpid_type_create_pairtype.lo src/mpid/common/datatype/mpid_type_create_resized.lo src/mpid/common/datatype/mpid_type_debug.lo src/mpid/common/datatype/mpid_type_dup.lo src/mpid/common/datatype/mpid_type_get_contents.lo src/mpid/common/datatype/mpid_type_get_envelope.lo src/mpid/common/datatype/mpid_type_indexed.lo src/mpid/common/datatype/mpid_type_struct.lo src/mpid/common/datatype/mpid_type_vector.lo src/mpid/common/datatype/mpid_type_zerolen.lo src/mpid/common/datatype/mpir_type_flatten.lo src/mpid/common/sched/mpid_sched.lo src/mpid/common/sock/poll/sock.lo src/mpid/common/thread/mpid_thread.lo src/mpi_t/mpit.lo src/nameserv/pmi/pmi_nameserv.lo src/pmi/simple/simple_pmiutil.lo src/pmi/simple/simple_pmi.lo src/mpi/attr/attr_delete.lo src/mpi/attr/attr_get.lo src/mpi/attr/attr_put.lo src/mpi/attr/comm_create_keyval.lo src/mpi/attr/comm_delete_attr.lo src/mpi/attr/comm_free_keyval.lo src/mpi/attr/comm_get_attr.lo src/mpi/attr/comm_set_attr.lo src/mpi/attr/keyval_create.lo src/mpi/attr/keyval_free.lo src/mpi/attr/type_create_keyval.lo src/mpi/attr/type_delete_attr.lo src/mpi/attr/type_free_keyval.lo src/mpi/attr/type_get_attr.lo src/mpi/attr/type_set_attr.lo src/mpi/attr/win_create_keyval.lo src/mpi/attr/win_delete_attr.lo src/mpi/attr/win_free_keyval.lo src/mpi/attr/win_get_attr.lo src/mpi/attr/win_set_attr.lo src/mpi/coll/allreduce.lo src/mpi/coll/barrier.lo src/mpi/coll/op_create.lo src/mpi/coll/op_free.lo src/mpi/coll/bcast.lo src/mpi/coll/alltoall.lo src/mpi/coll/alltoallv.lo src/mpi/coll/reduce.lo src/mpi/coll/scatter.lo src/mpi/coll/gather.lo src/mpi/coll/scatterv.lo src/mpi/coll/gatherv.lo src/mpi/coll/scan.lo src/mpi/coll/exscan.lo src/mpi/coll/allgather.lo src/mpi/coll/allgatherv.lo src/mpi/coll/red_scat.lo src/mpi/coll/alltoallw.lo src/mpi/coll/reduce_local.lo src/mpi/coll/op_commutative.lo src/mpi/coll/red_scat_block.lo src/mpi/coll/iallgather.lo src/mpi/coll/iallgatherv.lo src/mpi/coll/iallreduce.lo src/mpi/coll/ialltoall.lo src/mpi/coll/ialltoallv.lo src/mpi/coll/ialltoallw.lo src/mpi/coll/ibarrier.lo src/mpi/coll/ibcast.lo src/mpi/coll/iexscan.lo src/mpi/coll/igather.lo src/mpi/coll/igatherv.lo src/mpi/coll/ired_scat.lo src/mpi/coll/ired_scat_block.lo src/mpi/coll/ireduce.lo src/mpi/coll/iscan.lo src/mpi/coll/iscatter.lo src/mpi/coll/iscatterv.lo src/mpi/comm/comm_compare.lo src/mpi/comm/comm_create.lo src/mpi/comm/comm_create_group.lo src/mpi/comm/comm_dup.lo src/mpi/comm/comm_dup_with_info.lo src/mpi/comm/comm_free.lo src/mpi/comm/comm_get_name.lo src/mpi/comm/comm_get_info.lo src/mpi/comm/comm_set_info.lo src/mpi/comm/comm_group.lo src/mpi/comm/comm_idup.lo src/mpi/comm/comm_rank.lo src/mpi/comm/comm_size.lo src/mpi/comm/comm_remote_group.lo src/mpi/comm/comm_remote_size.lo src/mpi/comm/comm_set_name.lo src/mpi/comm/comm_split.lo src/mpi/comm/comm_test_inter.lo src/mpi/comm/intercomm_create.lo src/mpi/comm/intercomm_merge.lo src/mpi/comm/comm_split_type.lo src/mpi/comm/comm_group_failed.lo src/mpi/comm/comm_reenable_anysource.lo src/mpi/comm/comm_remote_group_failed.lo src/mpi/datatype/address.lo src/mpi/datatype/get_address.lo src/mpi/datatype/get_count.lo src/mpi/datatype/get_elements.lo src/mpi/datatype/get_elements_x.lo src/mpi/datatype/pack.lo src/mpi/datatype/unpack.lo src/mpi/datatype/pack_size.lo src/mpi/datatype/status_set_elements.lo src/mpi/datatype/status_set_elements_x.lo src/mpi/datatype/type_get_name.lo src/mpi/datatype/type_set_name.lo src/mpi/datatype/type_size.lo src/mpi/datatype/type_size_x.lo src/mpi/datatype/type_extent.lo src/mpi/datatype/type_vector.lo src/mpi/datatype/type_commit.lo src/mpi/datatype/type_indexed.lo src/mpi/datatype/type_hindexed.lo src/mpi/datatype/type_struct.lo src/mpi/datatype/type_contiguous.lo src/mpi/datatype/type_free.lo src/mpi/datatype/type_hvector.lo src/mpi/datatype/type_dup.lo src/mpi/datatype/type_get_envelope.lo src/mpi/datatype/type_get_contents.lo src/mpi/datatype/type_ub.lo src/mpi/datatype/type_lb.lo src/mpi/datatype/type_get_extent.lo src/mpi/datatype/type_get_extent_x.lo src/mpi/datatype/type_get_true_extent.lo src/mpi/datatype/type_get_true_extent_x.lo src/mpi/datatype/type_match_size.lo src/mpi/datatype/type_create_struct.lo src/mpi/datatype/type_create_hindexed.lo src/mpi/datatype/type_create_hvector.lo src/mpi/datatype/pack_external.lo src/mpi/datatype/pack_external_size.lo src/mpi/datatype/unpack_external.lo src/mpi/datatype/type_create_indexed_block.lo src/mpi/datatype/type_create_hindexed_block.lo src/mpi/datatype/type_create_resized.lo src/mpi/datatype/type_create_darray.lo src/mpi/datatype/type_create_subarray.lo src/mpi/errhan/add_error_code.lo src/mpi/errhan/add_error_class.lo src/mpi/errhan/add_error_string.lo src/mpi/errhan/comm_call_errhandler.lo src/mpi/errhan/comm_create_errhandler.lo src/mpi/errhan/comm_get_errhandler.lo src/mpi/errhan/comm_set_errhandler.lo src/mpi/errhan/errhandler_create.lo src/mpi/errhan/errhandler_free.lo src/mpi/errhan/errhandler_get.lo src/mpi/errhan/errhandler_set.lo src/mpi/errhan/error_class.lo src/mpi/errhan/error_string.lo src/mpi/errhan/file_create_errhandler.lo src/mpi/errhan/file_get_errhandler.lo src/mpi/errhan/file_set_errhandler.lo src/mpi/errhan/file_call_errhandler.lo src/mpi/errhan/win_create_errhandler.lo src/mpi/errhan/win_call_errhandler.lo src/mpi/errhan/win_get_errhandler.lo src/mpi/errhan/win_set_errhandler.lo src/mpi/group/group_compare.lo src/mpi/group/group_difference.lo src/mpi/group/group_excl.lo src/mpi/group/group_free.lo src/mpi/group/group_incl.lo src/mpi/group/group_intersection.lo src/mpi/group/group_range_excl.lo src/mpi/group/group_range_incl.lo src/mpi/group/group_rank.lo src/mpi/group/group_size.lo src/mpi/group/group_translate_ranks.lo src/mpi/group/group_union.lo src/mpi/info/info_create.lo src/mpi/info/info_delete.lo src/mpi/info/info_dup.lo src/mpi/info/info_free.lo src/mpi/info/info_get.lo src/mpi/info/info_getn.lo src/mpi/info/info_getnth.lo src/mpi/info/info_getvallen.lo src/mpi/info/info_set.lo src/mpi/init/abort.lo src/mpi/init/init.lo src/mpi/init/initialized.lo src/mpi/init/initthread.lo src/mpi/init/ismain.lo src/mpi/init/finalize.lo src/mpi/init/finalized.lo src/mpi/init/querythread.lo src/mpi/misc/getpname.lo src/mpi/misc/pcontrol.lo src/mpi/misc/version.lo src/mpi/misc/library_version.lo src/mpi/pt2pt/bsend.lo src/mpi/pt2pt/bsend_init.lo src/mpi/pt2pt/bufattach.lo src/mpi/pt2pt/buffree.lo src/mpi/pt2pt/cancel.lo src/mpi/pt2pt/greq_start.lo src/mpi/pt2pt/greq_complete.lo src/mpi/pt2pt/ibsend.lo src/mpi/pt2pt/improbe.lo src/mpi/pt2pt/imrecv.lo src/mpi/pt2pt/iprobe.lo src/mpi/pt2pt/irecv.lo src/mpi/pt2pt/irsend.lo src/mpi/pt2pt/isend.lo src/mpi/pt2pt/issend.lo src/mpi/pt2pt/mprobe.lo src/mpi/pt2pt/mrecv.lo src/mpi/pt2pt/probe.lo src/mpi/pt2pt/recv.lo src/mpi/pt2pt/recv_init.lo src/mpi/pt2pt/request_free.lo src/mpi/pt2pt/request_get_status.lo src/mpi/pt2pt/rsend.lo src/mpi/pt2pt/rsend_init.lo src/mpi/pt2pt/send.lo src/mpi/pt2pt/send_init.lo src/mpi/pt2pt/sendrecv.lo src/mpi/pt2pt/sendrecv_rep.lo src/mpi/pt2pt/status_set_cancelled.lo src/mpi/pt2pt/ssend.lo src/mpi/pt2pt/ssend_init.lo src/mpi/pt2pt/start.lo src/mpi/pt2pt/startall.lo src/mpi/pt2pt/test.lo src/mpi/pt2pt/test_cancelled.lo src/mpi/pt2pt/testall.lo src/mpi/pt2pt/testany.lo src/mpi/pt2pt/testsome.lo src/mpi/pt2pt/wait.lo src/mpi/pt2pt/waitall.lo src/mpi/pt2pt/waitany.lo src/mpi/pt2pt/waitsome.lo src/mpi/rma/accumulate.lo src/mpi/rma/alloc_mem.lo src/mpi/rma/compare_and_swap.lo src/mpi/rma/fetch_and_op.lo src/mpi/rma/free_mem.lo src/mpi/rma/get.lo src/mpi/rma/get_accumulate.lo src/mpi/rma/put.lo src/mpi/rma/raccumulate.lo src/mpi/rma/rget.lo src/mpi/rma/rget_accumulate.lo src/mpi/rma/rput.lo src/mpi/rma/win_allocate.lo src/mpi/rma/win_allocate_shared.lo src/mpi/rma/win_attach.lo src/mpi/rma/win_complete.lo src/mpi/rma/win_create.lo src/mpi/rma/win_create_dynamic.lo src/mpi/rma/win_detach.lo src/mpi/rma/win_fence.lo src/mpi/rma/win_flush.lo src/mpi/rma/win_flush_all.lo src/mpi/rma/win_flush_local.lo src/mpi/rma/win_flush_local_all.lo src/mpi/rma/win_free.lo src/mpi/rma/win_get_group.lo src/mpi/rma/win_get_info.lo src/mpi/rma/win_get_name.lo src/mpi/rma/win_lock.lo src/mpi/rma/win_lock_all.lo src/mpi/rma/win_post.lo src/mpi/rma/win_set_info.lo src/mpi/rma/win_set_name.lo src/mpi/rma/win_shared_query.lo src/mpi/rma/win_start.lo src/mpi/rma/win_sync.lo src/mpi/rma/win_test.lo src/mpi/rma/win_unlock.lo src/mpi/rma/win_unlock_all.lo src/mpi/rma/win_wait.lo src/mpi/spawn/comm_disconnect.lo src/mpi/spawn/comm_get_parent.lo src/mpi/spawn/comm_join.lo src/mpi/spawn/comm_spawn.lo src/mpi/spawn/comm_spawn_multiple.lo src/mpi/spawn/lookup_name.lo src/mpi/spawn/publish_name.lo src/mpi/spawn/unpublish_name.lo src/mpi/spawn/open_port.lo src/mpi/spawn/close_port.lo src/mpi/spawn/comm_connect.lo src/mpi/spawn/comm_accept.lo src/mpi/timer/wtime.lo src/mpi/timer/wtick.lo src/mpi/topo/cart_coords.lo src/mpi/topo/cart_create.lo src/mpi/topo/cart_get.lo src/mpi/topo/cart_map.lo src/mpi/topo/cart_rank.lo src/mpi/topo/cart_shift.lo src/mpi/topo/cart_sub.lo src/mpi/topo/dims_create.lo src/mpi/topo/graph_get.lo src/mpi/topo/graph_map.lo src/mpi/topo/graph_nbr.lo src/mpi/topo/graphcreate.lo src/mpi/topo/graphdimsget.lo src/mpi/topo/graphnbrcnt.lo src/mpi/topo/cartdim_get.lo src/mpi/topo/topo_test.lo src/mpi/topo/dist_gr_create_adj.lo src/mpi/topo/dist_gr_create.lo src/mpi/topo/dist_gr_neighb_count.lo src/mpi/topo/dist_gr_neighb.lo src/mpi/topo/inhb_allgather.lo src/mpi/topo/inhb_allgatherv.lo src/mpi/topo/inhb_alltoall.lo src/mpi/topo/inhb_alltoallv.lo src/mpi/topo/inhb_alltoallw.lo src/mpi/topo/nhb_allgather.lo src/mpi/topo/nhb_allgatherv.lo src/mpi/topo/nhb_alltoall.lo src/mpi/topo/nhb_alltoallv.lo src/mpi/topo/nhb_alltoallw.lo src/binding/f90/create_f90_int.lo src/binding/f90/create_f90_real.lo src/binding/f90/create_f90_complex.lo src/binding/f90/typef90cmplxf.lo src/binding/f90/typef90realf.lo src/binding/f90/typef90intf.lo src/mutex/mutex_create.lo src/mutex/mutex_free.lo src/mutex/mutex_lock.lo src/mutex/mutex_unlock.lo src/mpi_t/cat_changed.lo src/mpi_t/cat_get_categories.lo src/mpi_t/cat_get_cvars.lo src/mpi_t/cat_get_info.lo src/mpi_t/cat_get_num.lo src/mpi_t/cat_get_pvars.lo src/mpi_t/cvar_get_info.lo src/mpi_t/cvar_get_num.lo src/mpi_t/cvar_handle_alloc.lo src/mpi_t/cvar_handle_free.lo src/mpi_t/cvar_read.lo src/mpi_t/cvar_write.lo src/mpi_t/enum_get_info.lo src/mpi_t/enum_get_item.lo src/mpi_t/mpit_finalize.lo src/mpi_t/mpit_initthread.lo src/mpi_t/pvar_get_info.lo src/mpi_t/pvar_get_num.lo src/mpi_t/pvar_handle_alloc.lo src/mpi_t/pvar_handle_free.lo src/mpi_t/pvar_read.lo src/mpi_t/pvar_readreset.lo src/mpi_t/pvar_reset.lo src/mpi_t/pvar_session_create.lo src/mpi_t/pvar_session_free.lo src/mpi_t/pvar_start.lo src/mpi_t/pvar_stop.lo src/mpi_t/pvar_write.lo src/binding/f77/setbot.lo src/binding/f77/setbotf.lo -lmpl -lopa src/mpi/romio/libromio.la -lrt -lpthread ) libtool: install: /usr/bin/install -c lib/.libs/libmpich.so.12.0.0T /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpich.so.12.0.0 libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpich.so.12.0.0 libmpich.so.12 || { rm -f libmpich.so.12 && ln -s libmpich.so.12.0.0 libmpich.so.12; }; }) libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpich.so.12.0.0 libmpich.so || { rm -f libmpich.so && ln -s libmpich.so.12.0.0 libmpich.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpich.lai /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpich.la libtool: install: /usr/bin/install -c lib/.libs/libmpichcxx.so.12.0.0 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichcxx.so.12.0.0 libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpichcxx.so.12.0.0 libmpichcxx.so.12 || { rm -f libmpichcxx.so.12 && ln -s libmpichcxx.so.12.0.0 libmpichcxx.so.12; }; }) libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpichcxx.so.12.0.0 libmpichcxx.so || { rm -f libmpichcxx.so && ln -s libmpichcxx.so.12.0.0 libmpichcxx.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpichcxx.lai /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichcxx.la libtool: install: /usr/bin/install -c lib/.libs/libfmpich.so.12.0.0 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libfmpich.so.12.0.0 libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libfmpich.so.12.0.0 libfmpich.so.12 || { rm -f libfmpich.so.12 && ln -s libfmpich.so.12.0.0 libfmpich.so.12; }; }) libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libfmpich.so.12.0.0 libfmpich.so || { rm -f libfmpich.so && ln -s libfmpich.so.12.0.0 libfmpich.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libfmpich.lai /home/lucasogura/petsc/arch-linux2-c-opt/lib/libfmpich.la libtool: install: /usr/bin/install -c lib/.libs/libmpichf90.so.12.0.0 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichf90.so.12.0.0 libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpichf90.so.12.0.0 libmpichf90.so.12 || { rm -f libmpichf90.so.12 && ln -s libmpichf90.so.12.0.0 libmpichf90.so.12; }; }) libtool: install: (cd /home/lucasogura/petsc/arch-linux2-c-opt/lib && { ln -s -f libmpichf90.so.12.0.0 libmpichf90.so || { rm -f libmpichf90.so && ln -s libmpichf90.so.12.0.0 libmpichf90.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpichf90.lai /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichf90.la libtool: install: /usr/bin/install -c lib/.libs/libmpich.a /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpich.a libtool: install: chmod 644 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpich.a libtool: install: ranlib /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpich.a libtool: install: /usr/bin/install -c lib/.libs/libmpichcxx.a /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichcxx.a libtool: install: chmod 644 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichcxx.a libtool: install: ranlib /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichcxx.a libtool: install: /usr/bin/install -c lib/.libs/libfmpich.a /home/lucasogura/petsc/arch-linux2-c-opt/lib/libfmpich.a libtool: install: chmod 644 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libfmpich.a libtool: install: ranlib /home/lucasogura/petsc/arch-linux2-c-opt/lib/libfmpich.a libtool: install: /usr/bin/install -c lib/.libs/libmpichf90.a /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichf90.a libtool: install: chmod 644 /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichf90.a libtool: install: ranlib /home/lucasogura/petsc/arch-linux2-c-opt/lib/libmpichf90.a libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/sbin" ldconfig -n /home/lucasogura/petsc/arch-linux2-c-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/lucasogura/petsc/arch-linux2-c-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c src/env/mpichversion src/env/mpivars '/home/lucasogura/petsc/arch-linux2-c-opt/bin' libtool: install: /usr/bin/install -c src/env/mpichversion /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpichversion libtool: install: /usr/bin/install -c src/env/mpivars /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpivars mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/bin' /usr/bin/install -c src/env/mpicc src/env/parkill src/env/mpif77 src/env/mpif90 src/env/mpicxx '/home/lucasogura/petsc/arch-linux2-c-opt/bin' /usr/bin/make install-exec-hook make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' for e in /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx \ /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif77 /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 ; do \ if test -e ${e} ; then \ sed -e 's|^prefix=.*|prefix=/home/lucasogura/petsc/arch-linux2-c-opt|g' \ -e 's|^exec_prefix=.*|exec_prefix=/home/lucasogura/petsc/arch-linux2-c-opt|g' \ -e 's|^sysconfdir=.*|sysconfdir=/home/lucasogura/petsc/arch-linux2-c-opt/etc|g' \ -e 's|^includdir=.*|includedir=/home/lucasogura/petsc/arch-linux2-c-opt/include|g' \ -e 's|^libdir=.*|libdir=/home/lucasogura/petsc/arch-linux2-c-opt/lib|g' ${e} > ${e}.tmp ; \ /usr/bin/install -c ${e}.tmp ${e} ; \ rm -f ${e}.tmp ; \ fi ; \ done ; \ if test -e /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx ; then \ cd /home/lucasogura/petsc/arch-linux2-c-opt/bin && ln -f -s mpicxx mpic++ ; fi make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' /usr/bin/install -c -m 644 hydra_nameserver.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/hydra_nameserver.1 /usr/bin/install -c -m 644 hydra_persist.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/hydra_persist.1 /usr/bin/install -c -m 644 hydra_pmi_proxy.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/hydra_pmi_proxy.1 /usr/bin/install -c -m 644 mpicc.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/mpicc.1 /usr/bin/install -c -m 644 mpicxx.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/mpicxx.1 /usr/bin/install -c -m 644 mpiexec.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/mpiexec.1 /usr/bin/install -c -m 644 mpif77.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/mpif77.1 /usr/bin/install -c -m 644 mpif90.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/mpif90.1 /usr/bin/install -c -m 644 MPI_Abort.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Abort.3 /usr/bin/install -c -m 644 MPI_Accumulate.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Accumulate.3 /usr/bin/install -c -m 644 MPI_Add_error_class.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Add_error_class.3 /usr/bin/install -c -m 644 MPI_Add_error_code.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Add_error_code.3 /usr/bin/install -c -m 644 MPI_Add_error_string.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Add_error_string.3 /usr/bin/install -c -m 644 MPI_Address.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Address.3 /usr/bin/install -c -m 644 MPI_Allgather.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Allgather.3 /usr/bin/install -c -m 644 MPI_Allgatherv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Allgatherv.3 /usr/bin/install -c -m 644 MPI_Alloc_mem.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Alloc_mem.3 /usr/bin/install -c -m 644 MPI_Allreduce.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Allreduce.3 /usr/bin/install -c -m 644 MPI_Alltoall.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Alltoall.3 /usr/bin/install -c -m 644 MPI_Alltoallv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Alltoallv.3 /usr/bin/install -c -m 644 MPI_Alltoallw.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Alltoallw.3 /usr/bin/install -c -m 644 MPI_Attr_delete.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Attr_delete.3 /usr/bin/install -c -m 644 MPI_Attr_get.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Attr_get.3 /usr/bin/install -c -m 644 MPI_Attr_put.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Attr_put.3 /usr/bin/install -c -m 644 MPI_Barrier.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Barrier.3 /usr/bin/install -c -m 644 MPI_Bcast.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Bcast.3 /usr/bin/install -c -m 644 MPI_Bsend.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Bsend.3 /usr/bin/install -c -m 644 MPI_Bsend_init.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Bsend_init.3 /usr/bin/install -c -m 644 MPI_Buffer_attach.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Buffer_attach.3 /usr/bin/install -c -m 644 MPI_Buffer_detach.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Buffer_detach.3 /usr/bin/install -c -m 644 MPI_Cancel.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cancel.3 /usr/bin/install -c -m 644 MPI_Cart_coords.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cart_coords.3 /usr/bin/install -c -m 644 MPI_Cart_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cart_create.3 /usr/bin/install -c -m 644 MPI_Cartdim_get.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cartdim_get.3 /usr/bin/install -c -m 644 MPI_Cart_get.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cart_get.3 /usr/bin/install -c -m 644 MPI_Cart_map.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cart_map.3 /usr/bin/install -c -m 644 MPI_Cart_rank.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cart_rank.3 /usr/bin/install -c -m 644 MPI_Cart_shift.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cart_shift.3 /usr/bin/install -c -m 644 MPI_Cart_sub.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Cart_sub.3 /usr/bin/install -c -m 644 MPI_Close_port.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Close_port.3 /usr/bin/install -c -m 644 MPI_Comm_accept.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_accept.3 /usr/bin/install -c -m 644 MPI_Comm_call_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_compare.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_compare.3 /usr/bin/install -c -m 644 MPI_Comm_connect.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_connect.3 /usr/bin/install -c -m 644 MPI_Comm_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_create.3 /usr/bin/install -c -m 644 MPI_Comm_create_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_create_group.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_create_group.3 /usr/bin/install -c -m 644 MPI_Comm_create_keyval.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_create_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_delete_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_delete_attr.3 /usr/bin/install -c -m 644 MPI_Comm_disconnect.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_disconnect.3 /usr/bin/install -c -m 644 MPI_Comm_dup.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_dup.3 /usr/bin/install -c -m 644 MPI_Comm_dup_with_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_dup_with_info.3 /usr/bin/install -c -m 644 MPI_Comm_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_free.3 /usr/bin/install -c -m 644 MPI_Comm_free_keyval.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_free_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_get_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_get_attr.3 /usr/bin/install -c -m 644 MPI_Comm_get_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_get_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_get_info.3 /usr/bin/install -c -m 644 MPI_Comm_get_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_get_name.3 /usr/bin/install -c -m 644 MPI_Comm_get_parent.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_get_parent.3 /usr/bin/install -c -m 644 MPI_Comm_group.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_group.3 /usr/bin/install -c -m 644 MPI_Comm_idup.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_idup.3 /usr/bin/install -c -m 644 MPI_Comm_join.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_join.3 /usr/bin/install -c -m 644 MPI_Comm_rank.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_rank.3 /usr/bin/install -c -m 644 MPI_Comm_remote_group.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_remote_group.3 /usr/bin/install -c -m 644 MPI_Comm_remote_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_remote_size.3 /usr/bin/install -c -m 644 MPI_Comm_set_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_set_attr.3 /usr/bin/install -c -m 644 MPI_Comm_set_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_set_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_set_info.3 /usr/bin/install -c -m 644 MPI_Comm_set_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_set_name.3 /usr/bin/install -c -m 644 MPI_Comm_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_size.3 /usr/bin/install -c -m 644 MPI_Comm_spawn.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_spawn.3 /usr/bin/install -c -m 644 MPI_Comm_spawn_multiple.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_spawn_multiple.3 /usr/bin/install -c -m 644 MPI_Comm_split.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_split.3 /usr/bin/install -c -m 644 MPI_Comm_split_type.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_split_type.3 /usr/bin/install -c -m 644 MPI_Comm_test_inter.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Comm_test_inter.3 /usr/bin/install -c -m 644 MPI_Compare_and_swap.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Compare_and_swap.3 /usr/bin/install -c -m 644 MPI_Dims_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Dims_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Dist_graph_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create_adjacent.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Dist_graph_create_adjacent.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Dist_graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors_count.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Dist_graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Errhandler_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Errhandler_create.3 /usr/bin/install -c -m 644 MPI_Errhandler_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Errhandler_free.3 /usr/bin/install -c -m 644 MPI_Errhandler_get.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Errhandler_get.3 /usr/bin/install -c -m 644 MPI_Errhandler_set.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Errhandler_set.3 /usr/bin/install -c -m 644 MPI_Error_class.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Error_class.3 /usr/bin/install -c -m 644 MPI_Error_string.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Error_string.3 /usr/bin/install -c -m 644 MPI_Exscan.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Exscan.3 /usr/bin/install -c -m 644 MPI_Fetch_and_op.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Fetch_and_op.3 /usr/bin/install -c -m 644 MPI_File_c2f.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_c2f.3 /usr/bin/install -c -m 644 MPI_File_call_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_call_errhandler.3 /usr/bin/install -c -m 644 MPI_File_close.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_close.3 /usr/bin/install -c -m 644 MPI_File_create_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_create_errhandler.3 /usr/bin/install -c -m 644 MPI_File_delete.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_delete.3 /usr/bin/install -c -m 644 MPI_File_f2c.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_f2c.3 /usr/bin/install -c -m 644 MPI_File_get_amode.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_amode.3 /usr/bin/install -c -m 644 MPI_File_get_atomicity.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_atomicity.3 /usr/bin/install -c -m 644 MPI_File_get_byte_offset.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_byte_offset.3 /usr/bin/install -c -m 644 MPI_File_get_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_errhandler.3 /usr/bin/install -c -m 644 MPI_File_get_group.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_group.3 /usr/bin/install -c -m 644 MPI_File_get_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_info.3 /usr/bin/install -c -m 644 MPI_File_get_position.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_position.3 /usr/bin/install -c -m 644 MPI_File_get_position_shared.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_position_shared.3 /usr/bin/install -c -m 644 MPI_File_get_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_size.3 /usr/bin/install -c -m 644 MPI_File_get_type_extent.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_type_extent.3 /usr/bin/install -c -m 644 MPI_File_get_view.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_get_view.3 /usr/bin/install -c -m 644 MPI_File_iread.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_iread.3 /usr/bin/install -c -m 644 MPI_File_iread_at.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_iread_at.3 /usr/bin/install -c -m 644 MPI_File_iread_shared.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_iread_shared.3 /usr/bin/install -c -m 644 MPI_File_iwrite.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_iwrite.3 /usr/bin/install -c -m 644 MPI_File_iwrite_at.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_iwrite_at.3 /usr/bin/install -c -m 644 MPI_File_iwrite_shared.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_iwrite_shared.3 /usr/bin/install -c -m 644 MPI_File_open.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_open.3 /usr/bin/install -c -m 644 MPI_File_preallocate.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_preallocate.3 /usr/bin/install -c -m 644 MPI_File_read.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read.3 /usr/bin/install -c -m 644 MPI_File_read_all.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_all.3 /usr/bin/install -c -m 644 MPI_File_read_all_begin.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_all_end.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_at.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_at.3 /usr/bin/install -c -m 644 MPI_File_read_at_all.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_at_all.3 /usr/bin/install -c -m 644 MPI_File_read_at_all_begin.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_at_all_end.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_ordered.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_ordered.3 /usr/bin/install -c -m 644 MPI_File_read_ordered_begin.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_read_ordered_end.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_read_shared.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_read_shared.3 /usr/bin/install -c -m 644 MPI_File_seek.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_seek.3 /usr/bin/install -c -m 644 MPI_File_seek_shared.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_seek_shared.3 /usr/bin/install -c -m 644 MPI_File_set_atomicity.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_set_atomicity.3 /usr/bin/install -c -m 644 MPI_File_set_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_set_errhandler.3 /usr/bin/install -c -m 644 MPI_File_set_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_set_info.3 /usr/bin/install -c -m 644 MPI_File_set_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_set_size.3 /usr/bin/install -c -m 644 MPI_File_set_view.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_set_view.3 /usr/bin/install -c -m 644 MPI_File_sync.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_sync.3 /usr/bin/install -c -m 644 MPI_File_write.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write.3 /usr/bin/install -c -m 644 MPI_File_write_all.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_all.3 /usr/bin/install -c -m 644 MPI_File_write_all_begin.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_all_end.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_at.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_at.3 /usr/bin/install -c -m 644 MPI_File_write_at_all.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_at_all.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_begin.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_end.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_ordered.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_ordered.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_begin.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_end.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_write_shared.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_File_write_shared.3 /usr/bin/install -c -m 644 MPI_Finalize.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Finalize.3 /usr/bin/install -c -m 644 MPI_Finalized.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Finalized.3 /usr/bin/install -c -m 644 MPI_Free_mem.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Free_mem.3 /usr/bin/install -c -m 644 MPI_Gather.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Gather.3 /usr/bin/install -c -m 644 MPI_Gatherv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Gatherv.3 /usr/bin/install -c -m 644 MPI_Get.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get.3 /usr/bin/install -c -m 644 MPI_Get_accumulate.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get_accumulate.3 /usr/bin/install -c -m 644 MPI_Get_address.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get_address.3 /usr/bin/install -c -m 644 MPI_Get_count.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get_count.3 /usr/bin/install -c -m 644 MPI_Get_elements.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get_elements.3 /usr/bin/install -c -m 644 MPI_Get_elements_x.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get_elements_x.3 /usr/bin/install -c -m 644 MPI_Get_library_version.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get_library_version.3 /usr/bin/install -c -m 644 MPI_Get_processor_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get_processor_name.3 /usr/bin/install -c -m 644 MPI_Get_version.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Get_version.3 /usr/bin/install -c -m 644 MPI_Graph_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Graph_create.3 /usr/bin/install -c -m 644 MPI_Graphdims_get.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Graphdims_get.3 /usr/bin/install -c -m 644 MPI_Graph_get.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Graph_get.3 /usr/bin/install -c -m 644 MPI_Graph_map.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Graph_map.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors_count.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Grequest_complete.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Grequest_complete.3 /usr/bin/install -c -m 644 MPI_Grequest_start.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Grequest_start.3 /usr/bin/install -c -m 644 MPI_Group_compare.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_compare.3 /usr/bin/install -c -m 644 MPI_Group_difference.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_difference.3 /usr/bin/install -c -m 644 MPI_Group_excl.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_excl.3 /usr/bin/install -c -m 644 MPI_Group_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_free.3 /usr/bin/install -c -m 644 MPI_Group_incl.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_incl.3 /usr/bin/install -c -m 644 MPI_Group_intersection.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_intersection.3 /usr/bin/install -c -m 644 MPI_Group_range_excl.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_range_excl.3 /usr/bin/install -c -m 644 MPI_Group_range_incl.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_range_incl.3 /usr/bin/install -c -m 644 MPI_Group_rank.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_rank.3 /usr/bin/install -c -m 644 MPI_Group_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_size.3 /usr/bin/install -c -m 644 MPI_Group_translate_ranks.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_translate_ranks.3 /usr/bin/install -c -m 644 MPI_Group_union.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Group_union.3 /usr/bin/install -c -m 644 MPI_Iallgather.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Iallgather.3 /usr/bin/install -c -m 644 MPI_Iallgatherv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Iallgatherv.3 /usr/bin/install -c -m 644 MPI_Iallreduce.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Iallreduce.3 /usr/bin/install -c -m 644 MPI_Ialltoall.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ialltoall.3 /usr/bin/install -c -m 644 MPI_Ialltoallv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ialltoallv.3 /usr/bin/install -c -m 644 MPI_Ialltoallw.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ialltoallw.3 /usr/bin/install -c -m 644 MPI_Ibarrier.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ibarrier.3 /usr/bin/install -c -m 644 MPI_Ibcast.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ibcast.3 /usr/bin/install -c -m 644 MPI_Ibsend.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ibsend.3 /usr/bin/install -c -m 644 MPI_Iexscan.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Iexscan.3 /usr/bin/install -c -m 644 MPI_Igather.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Igather.3 /usr/bin/install -c -m 644 MPI_Igatherv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Igatherv.3 /usr/bin/install -c -m 644 MPI_Improbe.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Improbe.3 /usr/bin/install -c -m 644 MPI_Imrecv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Imrecv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgather.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ineighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgatherv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ineighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoall.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ineighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ineighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallw.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ineighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Info_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_create.3 /usr/bin/install -c -m 644 MPI_Info_delete.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_delete.3 /usr/bin/install -c -m 644 MPI_Info_dup.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_dup.3 /usr/bin/install -c -m 644 MPI_Info_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_free.3 /usr/bin/install -c -m 644 MPI_Info_get.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_get.3 /usr/bin/install -c -m 644 MPI_Info_get_nkeys.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_get_nkeys.3 /usr/bin/install -c -m 644 MPI_Info_get_nthkey.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_get_nthkey.3 /usr/bin/install -c -m 644 MPI_Info_get_valuelen.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_get_valuelen.3 /usr/bin/install -c -m 644 MPI_Info_set.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Info_set.3 /usr/bin/install -c -m 644 MPI_Init.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Init.3 /usr/bin/install -c -m 644 MPI_Initialized.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Initialized.3 /usr/bin/install -c -m 644 MPI_Init_thread.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Init_thread.3 /usr/bin/install -c -m 644 MPI_Intercomm_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Intercomm_create.3 /usr/bin/install -c -m 644 MPI_Intercomm_merge.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Intercomm_merge.3 /usr/bin/install -c -m 644 MPI_Iprobe.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Iprobe.3 /usr/bin/install -c -m 644 MPI_Irecv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Irecv.3 /usr/bin/install -c -m 644 MPI_Ireduce.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ireduce.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ireduce_scatter.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter_block.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ireduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Irsend.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Irsend.3 /usr/bin/install -c -m 644 MPI_Iscan.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Iscan.3 /usr/bin/install -c -m 644 MPI_Iscatter.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Iscatter.3 /usr/bin/install -c -m 644 MPI_Iscatterv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Iscatterv.3 /usr/bin/install -c -m 644 MPI_Isend.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Isend.3 /usr/bin/install -c -m 644 MPI_Issend.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Issend.3 /usr/bin/install -c -m 644 MPI_Is_thread_main.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Is_thread_main.3 /usr/bin/install -c -m 644 MPI_Keyval_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Keyval_create.3 /usr/bin/install -c -m 644 MPI_Keyval_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Keyval_free.3 /usr/bin/install -c -m 644 MPI_Lookup_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Lookup_name.3 /usr/bin/install -c -m 644 MPI_Mprobe.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Mprobe.3 /usr/bin/install -c -m 644 MPI_Mrecv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Mrecv.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgather.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Neighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgatherv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Neighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoall.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Neighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Neighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallw.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Neighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Op_commute.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Op_commute.3 /usr/bin/install -c -m 644 MPI_Op_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Op_create.3 /usr/bin/install -c -m 644 MPI_Open_port.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Open_port.3 /usr/bin/install -c -m 644 MPI_Op_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Op_free.3 /usr/bin/install -c -m 644 MPI_Pack.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Pack.3 /usr/bin/install -c -m 644 MPI_Pack_external.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Pack_external.3 /usr/bin/install -c -m 644 MPI_Pack_external_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Pack_external_size.3 /usr/bin/install -c -m 644 MPI_Pack_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Pack_size.3 /usr/bin/install -c -m 644 MPI_Pcontrol.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Pcontrol.3 /usr/bin/install -c -m 644 MPI_Probe.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Probe.3 /usr/bin/install -c -m 644 MPI_Publish_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Publish_name.3 /usr/bin/install -c -m 644 MPI_Put.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Put.3 /usr/bin/install -c -m 644 MPI_Query_thread.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Query_thread.3 /usr/bin/install -c -m 644 MPI_Raccumulate.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Raccumulate.3 /usr/bin/install -c -m 644 MPI_Recv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Recv.3 /usr/bin/install -c -m 644 MPI_Recv_init.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Recv_init.3 /usr/bin/install -c -m 644 MPI_Reduce.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Reduce.3 /usr/bin/install -c -m 644 MPI_Reduce_local.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Reduce_local.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Reduce_scatter.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter_block.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Reduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Register_datarep.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Register_datarep.3 /usr/bin/install -c -m 644 MPI_Request_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Request_free.3 /usr/bin/install -c -m 644 MPI_Request_get_status.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Request_get_status.3 /usr/bin/install -c -m 644 MPI_Rget.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Rget.3 /usr/bin/install -c -m 644 MPI_Rget_accumulate.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Rget_accumulate.3 /usr/bin/install -c -m 644 MPI_Rput.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Rput.3 /usr/bin/install -c -m 644 MPI_Rsend.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Rsend.3 /usr/bin/install -c -m 644 MPI_Rsend_init.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Rsend_init.3 /usr/bin/install -c -m 644 MPI_Scan.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Scan.3 /usr/bin/install -c -m 644 MPI_Scatter.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Scatter.3 /usr/bin/install -c -m 644 MPI_Scatterv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Scatterv.3 /usr/bin/install -c -m 644 MPI_Send.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Send.3 /usr/bin/install -c -m 644 MPI_Send_init.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Send_init.3 /usr/bin/install -c -m 644 MPI_Sendrecv.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Sendrecv.3 /usr/bin/install -c -m 644 MPI_Sendrecv_replace.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Sendrecv_replace.3 /usr/bin/install -c -m 644 MPI_Ssend.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ssend.3 /usr/bin/install -c -m 644 MPI_Ssend_init.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Ssend_init.3 /usr/bin/install -c -m 644 MPI_Start.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Start.3 /usr/bin/install -c -m 644 MPI_Startall.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Startall.3 /usr/bin/install -c -m 644 MPI_Status_set_cancelled.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Status_set_cancelled.3 /usr/bin/install -c -m 644 MPI_Status_set_elements.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Status_set_elements.3 /usr/bin/install -c -m 644 MPI_Status_set_elements_x.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Status_set_elements_x.3 /usr/bin/install -c -m 644 MPI_T_category_changed.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_category_changed.3 /usr/bin/install -c -m 644 MPI_T_category_get_categories.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_category_get_categories.3 /usr/bin/install -c -m 644 MPI_T_category_get_cvars.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_category_get_cvars.3 /usr/bin/install -c -m 644 MPI_T_category_get_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_category_get_info.3 /usr/bin/install -c -m 644 MPI_T_category_get_num.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_category_get_num.3 /usr/bin/install -c -m 644 MPI_T_category_get_pvars.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_category_get_pvars.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_cvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_num.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_cvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_alloc.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_cvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_cvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_cvar_read.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_cvar_read.3 /usr/bin/install -c -m 644 MPI_T_cvar_write.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_cvar_write.3 /usr/bin/install -c -m 644 MPI_T_enum_get_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_enum_get_info.3 /usr/bin/install -c -m 644 MPI_T_enum_get_item.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_enum_get_item.3 /usr/bin/install -c -m 644 MPI_Test.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Test.3 /usr/bin/install -c -m 644 MPI_Testall.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Testall.3 /usr/bin/install -c -m 644 MPI_Testany.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Testany.3 /usr/bin/install -c -m 644 MPI_Test_cancelled.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Test_cancelled.3 /usr/bin/install -c -m 644 MPI_Testsome.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Testsome.3 /usr/bin/install -c -m 644 MPI_T_finalize.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_finalize.3 /usr/bin/install -c -m 644 MPI_T_init_thread.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_init_thread.3 /usr/bin/install -c -m 644 MPI_Topo_test.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Topo_test.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_num.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_alloc.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_read.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_read.3 /usr/bin/install -c -m 644 MPI_T_pvar_readreset.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_readreset.3 /usr/bin/install -c -m 644 MPI_T_pvar_reset.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_reset.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_session_create.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_session_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_start.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_start.3 /usr/bin/install -c -m 644 MPI_T_pvar_stop.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_stop.3 /usr/bin/install -c -m 644 MPI_T_pvar_write.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_T_pvar_write.3 /usr/bin/install -c -m 644 MPI_Type_commit.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_commit.3 /usr/bin/install -c -m 644 MPI_Type_contiguous.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_contiguous.3 /usr/bin/install -c -m 644 MPI_Type_create_darray.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_darray.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed_block.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_hindexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_hvector.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_hvector.3 /usr/bin/install -c -m 644 MPI_Type_create_indexed_block.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_indexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_keyval.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_keyval.3 /usr/bin/install -c -m 644 MPI_Type_create_resized.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_resized.3 /usr/bin/install -c -m 644 MPI_Type_create_struct.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_struct.3 /usr/bin/install -c -m 644 MPI_Type_create_subarray.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_create_subarray.3 /usr/bin/install -c -m 644 MPI_Type_delete_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_delete_attr.3 /usr/bin/install -c -m 644 MPI_Type_dup.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_dup.3 /usr/bin/install -c -m 644 MPI_Type_extent.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_extent.3 /usr/bin/install -c -m 644 MPI_Type_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_free.3 /usr/bin/install -c -m 644 MPI_Type_free_keyval.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_free_keyval.3 /usr/bin/install -c -m 644 MPI_Type_get_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_get_attr.3 /usr/bin/install -c -m 644 MPI_Type_get_contents.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_get_contents.3 /usr/bin/install -c -m 644 MPI_Type_get_envelope.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_get_envelope.3 /usr/bin/install -c -m 644 MPI_Type_get_extent.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_get_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_extent_x.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_get_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_get_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_get_name.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_get_true_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent_x.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_get_true_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_hindexed.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_hvector.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_hvector.3 /usr/bin/install -c -m 644 MPI_Type_indexed.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_indexed.3 /usr/bin/install -c -m 644 MPI_Type_lb.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_lb.3 /usr/bin/install -c -m 644 MPI_Type_match_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_match_size.3 /usr/bin/install -c -m 644 MPI_Type_set_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_set_attr.3 /usr/bin/install -c -m 644 MPI_Type_set_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_set_name.3 /usr/bin/install -c -m 644 MPI_Type_size.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_size.3 /usr/bin/install -c -m 644 MPI_Type_size_x.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_size_x.3 /usr/bin/install -c -m 644 MPI_Type_struct.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_struct.3 /usr/bin/install -c -m 644 MPI_Type_ub.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_ub.3 /usr/bin/install -c -m 644 MPI_Type_vector.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Type_vector.3 /usr/bin/install -c -m 644 MPI_Unpack.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Unpack.3 /usr/bin/install -c -m 644 MPI_Unpack_external.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Unpack_external.3 /usr/bin/install -c -m 644 MPI_Unpublish_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Unpublish_name.3 /usr/bin/install -c -m 644 MPI_Wait.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Wait.3 /usr/bin/install -c -m 644 MPI_Waitall.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Waitall.3 /usr/bin/install -c -m 644 MPI_Waitany.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Waitany.3 /usr/bin/install -c -m 644 MPI_Waitsome.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Waitsome.3 /usr/bin/install -c -m 644 MPI_Win_allocate.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_allocate.3 /usr/bin/install -c -m 644 MPI_Win_allocate_shared.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_allocate_shared.3 /usr/bin/install -c -m 644 MPI_Win_attach.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_attach.3 /usr/bin/install -c -m 644 MPI_Win_call_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_complete.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_complete.3 /usr/bin/install -c -m 644 MPI_Win_create.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_create.3 /usr/bin/install -c -m 644 MPI_Win_create_dynamic.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_create_dynamic.3 /usr/bin/install -c -m 644 MPI_Win_create_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_create_keyval.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_create_keyval.3 /usr/bin/install -c -m 644 MPI_Win_delete_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_delete_attr.3 /usr/bin/install -c -m 644 MPI_Win_detach.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_detach.3 /usr/bin/install -c -m 644 MPI_Win_fence.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_fence.3 /usr/bin/install -c -m 644 MPI_Win_flush.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_flush.3 /usr/bin/install -c -m 644 MPI_Win_flush_all.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_flush_all.3 /usr/bin/install -c -m 644 MPI_Win_flush_local.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_flush_local.3 /usr/bin/install -c -m 644 MPI_Win_flush_local_all.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_flush_local_all.3 /usr/bin/install -c -m 644 MPI_Win_free.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_free.3 /usr/bin/install -c -m 644 MPI_Win_free_keyval.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_free_keyval.3 /usr/bin/install -c -m 644 MPI_Win_get_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_get_attr.3 /usr/bin/install -c -m 644 MPI_Win_get_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_get_group.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_get_group.3 /usr/bin/install -c -m 644 MPI_Win_get_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_get_info.3 /usr/bin/install -c -m 644 MPI_Win_get_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_get_name.3 /usr/bin/install -c -m 644 MPI_Win_lock.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_lock.3 /usr/bin/install -c -m 644 MPI_Win_lock_all.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_lock_all.3 /usr/bin/install -c -m 644 MPI_Win_post.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_post.3 /usr/bin/install -c -m 644 MPI_Win_set_attr.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_set_attr.3 /usr/bin/install -c -m 644 MPI_Win_set_errhandler.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_set_info.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_set_info.3 /usr/bin/install -c -m 644 MPI_Win_set_name.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_set_name.3 /usr/bin/install -c -m 644 MPI_Win_shared_query.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_shared_query.3 /usr/bin/install -c -m 644 MPI_Win_start.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_start.3 /usr/bin/install -c -m 644 MPI_Win_sync.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_sync.3 /usr/bin/install -c -m 644 MPI_Win_test.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_test.3 /usr/bin/install -c -m 644 MPI_Win_unlock.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_unlock.3 /usr/bin/install -c -m 644 MPI_Win_unlock_all.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_unlock_all.3 /usr/bin/install -c -m 644 MPI_Win_wait.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Win_wait.3 /usr/bin/install -c -m 644 MPI_Wtick.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Wtick.3 /usr/bin/install -c -m 644 MPI_Wtime.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPI_Wtime.3 /usr/bin/install -c -m 644 MPIX_Comm_group_failed.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPIX_Comm_group_failed.3 /usr/bin/install -c -m 644 MPIX_Comm_reenable_anysource.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPIX_Comm_reenable_anysource.3 /usr/bin/install -c -m 644 MPIX_Comm_remote_group_failed.3 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man3/MPIX_Comm_remote_group_failed.3 if [ ! -e /home/lucasogura/petsc/arch-linux2-c-opt/share/doc/mpich ] ; then mkdir -p /home/lucasogura/petsc/arch-linux2-c-opt/share/doc/mpich ; fi if [ -s ./doc/userguide/user.pdf ] ; then /usr/bin/install -c -m 644 ./doc/userguide/user.pdf /home/lucasogura/petsc/arch-linux2-c-opt/share/doc/mpich/user.pdf ; fi if [ -s ./doc/installguide/install.pdf ] ; then /usr/bin/install -c -m 644 ./doc/installguide/install.pdf /home/lucasogura/petsc/arch-linux2-c-opt/share/doc/mpich/install.pdf ; fi if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf /home/lucasogura/petsc/arch-linux2-c-opt/share/doc/mpich/logging.pdf ; fi mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/include' /usr/bin/install -c -m 644 src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod '/home/lucasogura/petsc/arch-linux2-c-opt/include' mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/include' /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/f77/mpif.h src/include/mpi.h '/home/lucasogura/petsc/arch-linux2-c-opt/include' mkdir -p '/home/lucasogura/petsc/arch-linux2-c-opt/lib/pkgconfig' /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '/home/lucasogura/petsc/arch-linux2-c-opt/lib/pkgconfig' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' Making install in examples make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1 && /usr/bin/make clean stdout: Making clean in /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' Making clean in /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' Making clean in src make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/src' Making clean in test make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o test -z "sanity.log test_primitives.log test_barriers.log test_queue.log" || rm -f sanity.log test_primitives.log test_barriers.log test_queue.log test -z "sanity.trs test_primitives.trs test_barriers.trs test_queue.trs" || rm -f sanity.trs test_primitives.trs test_barriers.trs test_queue.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa/test' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/openpa' Making clean in src/mpi/romio make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' test -z "" || rm -f rm -rf .libs _libs rm -rf adio/ad_bg/.libs adio/ad_bg/_libs rm -rf adio/ad_bgl/.libs adio/ad_bgl/_libs rm -rf adio/ad_bglockless/.libs adio/ad_bglockless/_libs rm -rf adio/ad_gridftp/.libs adio/ad_gridftp/_libs rm -rf adio/ad_hfs/.libs adio/ad_hfs/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pfs/.libs adio/ad_pfs/_libs rm -rf adio/ad_piofs/.libs adio/ad_piofs/_libs rm -rf adio/ad_pvfs/.libs adio/ad_pvfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_sfs/.libs adio/ad_sfs/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/ad_zoidfs/.libs adio/ad_zoidfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/.libs mpi-io/glue/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la " || rm -f libromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_bg/*.o rm -f adio/ad_bg/*.lo rm -f adio/ad_bgl/*.o rm -f adio/ad_bgl/*.lo rm -f adio/ad_bglockless/*.o rm -f adio/ad_bglockless/*.lo rm -f adio/ad_gridftp/*.o rm -f adio/ad_gridftp/*.lo rm -f adio/ad_hfs/*.o rm -f adio/ad_hfs/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pfs/*.o rm -f adio/ad_pfs/*.lo rm -f adio/ad_piofs/*.o rm -f adio/ad_piofs/*.lo rm -f adio/ad_pvfs/*.o rm -f adio/ad_pvfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_sfs/*.o rm -f adio/ad_sfs/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/ad_zoidfs/*.o rm -f adio/ad_zoidfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/*.o rm -f mpi-io/glue/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpi/romio' Making clean in src/pm/hydra make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' Making clean in ../../mpl make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/mpl' Making clean in tools/topo/hwloc/hwloc make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in src make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making clean in include make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs rm -rf pm/pmiserv/.libs pm/pmiserv/_libs rm -rf tools/bootstrap/external/.libs tools/bootstrap/external/_libs rm -rf tools/bootstrap/persist/.libs tools/bootstrap/persist/_libs rm -rf tools/bootstrap/src/.libs tools/bootstrap/src/_libs rm -rf tools/bootstrap/utils/.libs tools/bootstrap/utils/_libs rm -rf tools/ckpoint/.libs tools/ckpoint/_libs rm -rf tools/ckpoint/blcr/.libs tools/ckpoint/blcr/_libs rm -rf tools/debugger/.libs tools/debugger/_libs rm -rf tools/demux/.libs tools/demux/_libs rm -rf tools/ftb/.libs tools/ftb/_libs rm -rf tools/topo/.libs tools/topo/_libs rm -rf tools/topo/hwloc/.libs tools/topo/hwloc/_libs rm -rf ui/utils/.libs ui/utils/_libs rm -rf utils/alloc/.libs utils/alloc/_libs rm -rf utils/args/.libs utils/args/_libs rm -rf utils/dbg/.libs utils/dbg/_libs rm -rf utils/env/.libs utils/env/_libs rm -rf utils/launch/.libs utils/launch/_libs rm -rf utils/others/.libs utils/others/_libs rm -rf utils/signals/.libs utils/signals/_libs rm -rf utils/sock/.libs utils/sock/_libs rm -rf utils/string/.libs utils/string/_libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f pm/pmiserv/*.o rm -f pm/pmiserv/*.lo rm -f tools/bootstrap/external/*.o rm -f tools/bootstrap/external/*.lo rm -f tools/bootstrap/persist/*.o rm -f tools/bootstrap/persist/*.lo rm -f tools/bootstrap/src/*.o rm -f tools/bootstrap/src/*.lo rm -f tools/bootstrap/utils/*.o rm -f tools/bootstrap/utils/*.lo rm -f tools/ckpoint/*.o rm -f tools/ckpoint/*.lo rm -f tools/ckpoint/blcr/*.o rm -f tools/ckpoint/blcr/*.lo rm -f tools/debugger/*.o rm -f tools/debugger/*.lo rm -f tools/demux/*.o rm -f tools/demux/*.lo rm -f tools/ftb/*.o rm -f tools/ftb/*.lo rm -f tools/nameserver/*.o rm -f tools/topo/*.o rm -f tools/topo/*.lo rm -f tools/topo/hwloc/*.o rm -f tools/topo/hwloc/*.lo rm -f ui/mpich/*.o rm -f ui/utils/*.o rm -f ui/utils/*.lo rm -f utils/alloc/*.o rm -f utils/alloc/*.lo rm -f utils/args/*.o rm -f utils/args/*.lo rm -f utils/dbg/*.o rm -f utils/dbg/*.lo rm -f utils/env/*.o rm -f utils/env/*.lo rm -f utils/launch/*.o rm -f utils/launch/*.lo rm -f utils/others/*.o rm -f utils/others/*.lo rm -f utils/signals/*.o rm -f utils/signals/*.lo rm -f utils/sock/*.o rm -f utils/sock/*.lo rm -f utils/string/*.o rm -f utils/string/*.lo rm -f *.lo make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/src/pm/hydra' Making clean in . make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' rm -f src/env/mpichversion src/env/mpivars test -z "src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod" || rm -f src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod test -z "lib/libmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la" || rm -f lib/libmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/f77/.libs src/binding/f77/_libs rm -rf src/binding/f90/.libs src/binding/f90/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/ib/.libs src/mpid/ch3/channels/nemesis/netmod/ib/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mx/.libs src/mpid/ch3/channels/nemesis/netmod/mx/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/newmad/.libs src/mpid/ch3/channels/nemesis/netmod/newmad/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/scif/.libs src/mpid/ch3/channels/nemesis/netmod/scif/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/common/datatype/.libs src/mpid/common/datatype/_libs rm -rf src/mpid/common/datatype/dataloop/.libs src/mpid/common/datatype/dataloop/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/sock/poll/.libs src/mpid/common/sock/poll/_libs rm -rf src/mpid/common/thread/.libs src/mpid/common/thread/_libs rm -rf src/mpid/pamid/src/.libs src/mpid/pamid/src/_libs rm -rf src/mpid/pamid/src/coll/.libs src/mpid/pamid/src/coll/_libs rm -rf src/mpid/pamid/src/coll/allgather/.libs src/mpid/pamid/src/coll/allgather/_libs rm -rf src/mpid/pamid/src/coll/allgatherv/.libs src/mpid/pamid/src/coll/allgatherv/_libs rm -rf src/mpid/pamid/src/coll/allreduce/.libs src/mpid/pamid/src/coll/allreduce/_libs rm -rf src/mpid/pamid/src/coll/alltoall/.libs src/mpid/pamid/src/coll/alltoall/_libs rm -rf src/mpid/pamid/src/coll/alltoallv/.libs src/mpid/pamid/src/coll/alltoallv/_libs rm -rf src/mpid/pamid/src/coll/alltoallw/.libs src/mpid/pamid/src/coll/alltoallw/_libs rm -rf src/mpid/pamid/src/coll/barrier/.libs src/mpid/pamid/src/coll/barrier/_libs rm -rf src/mpid/pamid/src/coll/bcast/.libs src/mpid/pamid/src/coll/bcast/_libs rm -rf src/mpid/pamid/src/coll/exscan/.libs src/mpid/pamid/src/coll/exscan/_libs rm -rf src/mpid/pamid/src/coll/gather/.libs src/mpid/pamid/src/coll/gather/_libs rm -rf src/mpid/pamid/src/coll/gatherv/.libs src/mpid/pamid/src/coll/gatherv/_libs rm -rf src/mpid/pamid/src/coll/ired_scat/.libs src/mpid/pamid/src/coll/ired_scat/_libs rm -rf src/mpid/pamid/src/coll/ired_scat_block/.libs src/mpid/pamid/src/coll/ired_scat_block/_libs rm -rf src/mpid/pamid/src/coll/reduce/.libs src/mpid/pamid/src/coll/reduce/_libs rm -rf src/mpid/pamid/src/coll/scan/.libs src/mpid/pamid/src/coll/scan/_libs rm -rf src/mpid/pamid/src/coll/scatter/.libs src/mpid/pamid/src/coll/scatter/_libs rm -rf src/mpid/pamid/src/coll/scatterv/.libs src/mpid/pamid/src/coll/scatterv/_libs rm -rf src/mpid/pamid/src/comm/.libs src/mpid/pamid/src/comm/_libs rm -rf src/mpid/pamid/src/dyntask/.libs src/mpid/pamid/src/dyntask/_libs rm -rf src/mpid/pamid/src/misc/.libs src/mpid/pamid/src/misc/_libs rm -rf src/mpid/pamid/src/mpix/.libs src/mpid/pamid/src/mpix/_libs rm -rf src/mpid/pamid/src/onesided/.libs src/mpid/pamid/src/onesided/_libs rm -rf src/mpid/pamid/src/pamix/.libs src/mpid/pamid/src/pamix/_libs rm -rf src/mpid/pamid/src/pt2pt/.libs src/mpid/pamid/src/pt2pt/_libs rm -rf src/mpid/pamid/src/pt2pt/persistent/.libs src/mpid/pamid/src/pt2pt/persistent/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/mpd/.libs src/nameserv/mpd/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pmi/pmi2/poe/.libs src/pmi/pmi2/poe/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/util/cvar/.libs src/util/cvar/_libs rm -rf src/util/dbg/.libs src/util/dbg/_libs rm -rf src/util/instrm/.libs src/util/instrm/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/msgs/.libs src/util/msgs/_libs rm -rf src/util/other/.libs src/util/other/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs rm -rf src/util/thread/.libs src/util/thread/_libs ( cd test && /usr/bin/make clean ) make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test' Making clean in mpi make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi' Making clean in util make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/util' rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/util' Making clean in attr make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/attr' Making clean in basic make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/basic' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/basic' Making clean in datatype make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count large_type large_type_sendrec lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms" || rm -f blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count large_type large_type_sendrec lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/datatype' Making clean in coll make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/coll' Making clean in comm make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_idup_mul comm_idup_overlap comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_idup_mul comm_idup_overlap comm_info rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/comm' Making clean in errhan make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "adderr commcall errfatal predef_eh" || rm -f adderr commcall errfatal predef_eh rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errhan' Making clean in group make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/group' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/group' Making clean in info make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoenv rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/info' Making clean in init make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/init' Making clean in pt2pt make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/pt2pt' Making clean in rma make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example req_example_shm win_info pscw_ordering mutex_bench mutex_bench_shared mutex_bench_shm rma-contig badrma nb_test" || rm -f allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example req_example_shm win_info pscw_ordering mutex_bench mutex_bench_shared mutex_bench_shm rma-contig badrma nb_test rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/rma' Making clean in topo make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/topo' Making clean in errors make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors' Making clean in attr make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "keyvalmis" || rm -f keyvalmis rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/attr' Making clean in coll make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "noalias rerr bcastlength reduce_local" || rm -f noalias rerr bcastlength reduce_local rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/coll' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/comm' Making clean in datatype make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "getcnterr" || rm -f getcnterr rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/datatype' Making clean in group make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/group' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "gerr" || rm -f gerr rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/group' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/pt2pt' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/rma' Making clean in topo make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartsmall" || rm -f cartsmall rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/topo' Making clean in basic make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/basic' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/basic' Making clean in faults make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/faults' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/faults' Making clean in io make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrret openerr" || rm -f fileerrret openerr rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/io' Making clean in f77 make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77' Making clean in io make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77/io' make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f77' Making clean in f90 make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90' Making clean in io make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90/io' make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/f90' Making clean in cxx make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx' Making clean in io make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx/io' Making clean in errhan make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx/errhan' make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/cxx' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "badport unpub lookup_name" || rm -f badport unpub lookup_name rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors/spawn' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/errors' Making clean in manual make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual' Making clean in mpi_t make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual/mpi_t' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual' test -z "summary.xml summary.tap test-port" || rm -f summary.xml summary.tap test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/manual' Making clean in perf make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/perf' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/perf' Making clean in mpi_t make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpi_t_str mpit_vars" || rm -f mpi_t_str mpit_vars rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/mpi_t' Making clean in impls make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls' Making clean in mpich make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich' Making clean in mpi_t make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "collparmt" || rm -f collparmt rm -f *.o make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich/mpi_t' make[6]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich' make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls/mpich' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/impls' Making clean in io make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/io' Making clean in f77 make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77' Making clean in util make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/util' rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/util' Making clean in attr make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/attr' Making clean in datatype make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/datatype' Making clean in coll make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/coll' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf statusesf greqf mprobef" || rm -f allpairf statusesf greqf mprobef rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/pt2pt' Making clean in info make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/info' Making clean in init make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/init' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/comm' Making clean in topo make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/topo' Making clean in ext make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/ext' Making clean in profile make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f" || rm -f profile1f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/profile' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/spawn' Making clean in io make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/io' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77/rma' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f77' Making clean in f90 make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90' Making clean in util make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/util' rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/util' Making clean in timer make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/timer' Making clean in attr make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/attr' Making clean in coll make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/coll' Making clean in datatype make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/datatype' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf90 statusesf90 greqf90 mprobef90" || rm -f allpairf90 statusesf90 greqf90 mprobef90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/pt2pt' Making clean in info make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/info' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/comm' Making clean in topo make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/topo' Making clean in ext make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/ext' Making clean in init make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/init' Making clean in misc make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/misc' Making clean in f90types make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/f90types' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "createf90types" || rm -f createf90types rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/f90types' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/rma' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/spawn' Making clean in io make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90/io' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/f90' Making clean in cxx make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx' Making clean in util make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/util' rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/util' Making clean in attr make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/attr' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/pt2pt' Making clean in init make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/init' Making clean in info make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/info' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/comm' Making clean in coll make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx" || rm -f arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/coll' Making clean in datatype make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "packsizex typecntsx typenamex typemiscx" || rm -f packsizex typecntsx typenamex typemiscx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/datatype' Making clean in errhan make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/errhan' Making clean in io make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/io' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/rma' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx/spawn' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/cxx' Making clean in threads make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads' Making clean in util make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/util' rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/util' Making clean in pt2pt make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/pt2pt' Making clean in comm make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/comm' Making clean in init make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "initth" || rm -f initth rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/init' Making clean in mpi_t make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpit_threading" || rm -f mpit_threading rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/mpi_t' Making clean in spawn make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/spawn' Making clean in rma make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "multirma" || rm -f multirma rm -f *.o make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads/rma' make[5]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads' make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/threads' Making clean in spawn make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/spawn' Making clean in ft make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/ft' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter rm -f *.o make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi/ft' Making clean in . make[4]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[4]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi' make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/mpi' Making clean in commands make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test/commands' Making clean in . make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/test' rm -f /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpic++ test -z "" || rm -f test -z "" || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/f77/*.o rm -f src/binding/f77/*.lo rm -f src/binding/f90/*.o rm -f src/binding/f90/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/ib/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/ib/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/common/datatype/*.o rm -f src/mpid/common/datatype/*.lo rm -f src/mpid/common/datatype/dataloop/*.o rm -f src/mpid/common/datatype/dataloop/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/sock/poll/*.o rm -f src/mpid/common/sock/poll/*.lo rm -f src/mpid/common/thread/*.o rm -f src/mpid/common/thread/*.lo rm -f src/mpid/pamid/src/*.o rm -f src/mpid/pamid/src/*.lo rm -f src/mpid/pamid/src/coll/*.o rm -f src/mpid/pamid/src/coll/*.lo rm -f src/mpid/pamid/src/coll/allgather/*.o rm -f src/mpid/pamid/src/coll/allgather/*.lo rm -f src/mpid/pamid/src/coll/allgatherv/*.o rm -f src/mpid/pamid/src/coll/allgatherv/*.lo rm -f src/mpid/pamid/src/coll/allreduce/*.o rm -f src/mpid/pamid/src/coll/allreduce/*.lo rm -f src/mpid/pamid/src/coll/alltoall/*.o rm -f src/mpid/pamid/src/coll/alltoall/*.lo rm -f src/mpid/pamid/src/coll/alltoallv/*.o rm -f src/mpid/pamid/src/coll/alltoallv/*.lo rm -f src/mpid/pamid/src/coll/alltoallw/*.o rm -f src/mpid/pamid/src/coll/alltoallw/*.lo rm -f src/mpid/pamid/src/coll/barrier/*.o rm -f src/mpid/pamid/src/coll/barrier/*.lo rm -f src/mpid/pamid/src/coll/bcast/*.o rm -f src/mpid/pamid/src/coll/bcast/*.lo rm -f src/mpid/pamid/src/coll/exscan/*.o rm -f src/mpid/pamid/src/coll/exscan/*.lo rm -f src/mpid/pamid/src/coll/gather/*.o rm -f src/mpid/pamid/src/coll/gather/*.lo rm -f src/mpid/pamid/src/coll/gatherv/*.o rm -f src/mpid/pamid/src/coll/gatherv/*.lo rm -f src/mpid/pamid/src/coll/ired_scat/*.o rm -f src/mpid/pamid/src/coll/ired_scat/*.lo rm -f src/mpid/pamid/src/coll/ired_scat_block/*.o rm -f src/mpid/pamid/src/coll/ired_scat_block/*.lo rm -f src/mpid/pamid/src/coll/reduce/*.o rm -f src/mpid/pamid/src/coll/reduce/*.lo rm -f src/mpid/pamid/src/coll/scan/*.o rm -f src/mpid/pamid/src/coll/scan/*.lo rm -f src/mpid/pamid/src/coll/scatter/*.o rm -f src/mpid/pamid/src/coll/scatter/*.lo rm -f src/mpid/pamid/src/coll/scatterv/*.o rm -f src/mpid/pamid/src/coll/scatterv/*.lo rm -f src/mpid/pamid/src/comm/*.o rm -f src/mpid/pamid/src/comm/*.lo rm -f src/mpid/pamid/src/dyntask/*.o rm -f src/mpid/pamid/src/dyntask/*.lo rm -f src/mpid/pamid/src/misc/*.o rm -f src/mpid/pamid/src/misc/*.lo rm -f src/mpid/pamid/src/mpix/*.o rm -f src/mpid/pamid/src/mpix/*.lo rm -f src/mpid/pamid/src/onesided/*.o rm -f src/mpid/pamid/src/onesided/*.lo rm -f src/mpid/pamid/src/pamix/*.o rm -f src/mpid/pamid/src/pamix/*.lo rm -f src/mpid/pamid/src/pt2pt/*.o rm -f src/mpid/pamid/src/pt2pt/*.lo rm -f src/mpid/pamid/src/pt2pt/persistent/*.o rm -f src/mpid/pamid/src/pt2pt/persistent/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/mpd/*.o rm -f src/nameserv/mpd/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/util/*.o rm -f src/pmi/pmi2/poe/*.o rm -f src/pmi/pmi2/poe/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/util/cvar/*.o rm -f src/util/cvar/*.lo rm -f src/util/dbg/*.o rm -f src/util/dbg/*.lo rm -f src/util/instrm/*.o rm -f src/util/instrm/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/msgs/*.o rm -f src/util/msgs/*.lo rm -f src/util/other/*.o rm -f src/util/other/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f src/util/thread/*.o rm -f src/util/thread/*.lo rm -f *.lo make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1' Making clean in examples make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1/examples' Deleting "CC" Deleting "CXX" Deleting "FC" ================================================================================ TEST printEnvVariables from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1515) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1515) **** printenv **** LC_NUMERIC=pt_BR.UTF-8 MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/lucasogura GNOME_DESKTOP_SESSION_ID=this-is-deprecated UPSTART_EVENTS=started starting LESSOPEN=| /usr/bin/lesspipe %s LIBGL_DRIVERS_PATH=/usr/lib/fglrx/dri:/usr/lib/x86_64-linux-gnu/dri:/usr/lib/dri:/usr/lib32/fglrx/dri:/usr/lib/i386-linux-gnu/dri XDG_VTNR=7 QT_IM_MODULE=ibus LOGNAME=lucasogura USER=lucasogura PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games LC_PAPER=pt_BR.UTF-8 GNOME_KEYRING_CONTROL=/run/user/1000/keyring-YNpjjc GTK_IM_MODULE=ibus AMDAPPSDKROOT=/opt/AMDAPP LD_LIBRARY_PATH=:/opt/AMDAPP/lib/x86_64:/opt/AMDAPP/lib/x86:/usr/lib32:/home/lucasogura/petsc/arch-linux2-c-opt/lib SSH_AGENT_PID=1760 LANG=en_US.UTF-8 TERM=xterm SHELL=/bin/bash XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0 XAUTHORITY=/home/lucasogura/.Xauthority LANGUAGE=pt_BR:pt:pt_PT:en COMPIZ_CONFIG_PROFILE=ubuntu LC_MONETARY=pt_BR.UTF-8 QT_QPA_PLATFORMTHEME=appmenu-qt5 JOB=gnome-session TEXTDOMAIN=im-config UPSTART_INSTANCE= CLUTTER_IM_MODULE=xim WINDOWID=69206028 SESSIONTYPE=gnome-session XMODIFIERS=@im=ibus GPG_AGENT_INFO=/run/user/1000/keyring-YNpjjc/gpg:0:1 HOME=/home/lucasogura QT4_IM_MODULE=xim SELINUX_INIT=YES SHLVL=1 XDG_RUNTIME_DIR=/run/user/1000 INSTANCE=Unity LC_ADDRESS=pt_BR.UTF-8 SSH_AUTH_SOCK=/run/user/1000/keyring-YNpjjc/ssh VTE_VERSION=3409 GDMSESSION=ubuntu IM_CONFIG_PHASE=1 UPSTART_JOB=unity-settings-daemon TEXTDOMAINDIR=/usr/share/locale/ GNOME_KEYRING_PID=1693 XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0 LESSCLOSE=/usr/bin/lesspipe %s %s XDG_CURRENT_DESKTOP=Unity XDG_SESSION_ID=c2 DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-9gk5ERdYeF _=./configure DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path LC_IDENTIFICATION=pt_BR.UTF-8 DESKTOP_SESSION=ubuntu UPSTART_SESSION=unix:abstract=/com/ubuntu/upstart-session/1000/1696 XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/usr/share/upstart/xdg:/etc/xdg GTK_MODULES=overlay-scrollbar:unity-gtk-module UBUNTU_MENUPROXY=1 LC_NAME=pt_BR.UTF-8 OLDPWD=/home/lucasogura GDM_LANG=pt_BR LC_TELEPHONE=pt_BR.UTF-8 LC_MEASUREMENT=pt_BR.UTF-8 PWD=/home/lucasogura/petsc SSH_AGENT_LAUNCHER=upstart COLORTERM=gnome-terminal DISPLAY=:0 LC_TIME=pt_BR.UTF-8 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: XDG_DATA_DIRS=/usr/share/ubuntu:/usr/share/gnome:/usr/local/share/:/usr/share/ XDG_SEAT=seat0 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1522) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1522) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1487) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1487) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1506) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1506) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:398) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:398) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:408) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:408) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:524) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:524) Locate a functional C compiler Checking for program /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc...found Defined make macro "CC" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc" Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:559) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:559) Locate a functional C preprocessor Checking for program /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc...found Defined make macro "CPP" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E" Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 276 "/usr/include/stdlib.h" 3 4 extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) atoi (const char *__nptr) { return (int) strtol (__nptr, (char **) ((void *)0), 10); } extern __inline __attribute__ ((__gnu_inline__)) long int __attribute__ ((__nothrow__ , __leaf__)) atol (const char *__nptr) { return strtol (__nptr, (char **) ((void *)0), 10); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) long long int __attribute__ ((__nothrow__ , __leaf__)) atoll (const char *__nptr) { return strtoll (__nptr, (char **) ((void *)0), 10); } # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 1 "/usr/include/x86_64-linux-gnu/bits/select2.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select2.h" 3 4 extern long int __fdelt_chk (long int __d); extern long int __fdelt_warn (long int __d) __attribute__((__warning__ ("bit outside of fd_set selected"))); # 129 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__warn_unused_result__)); extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__warn_unused_result__)); extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__warn_unused_result__)); extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 513 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 578 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 712 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) __attribute__ ((__warn_unused_result__)); # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); typedef int (*__compar_fn_t) (const void *, const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) __attribute__ ((__warn_unused_result__)); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h" 1 3 4 # 19 "/usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h" 3 4 extern __inline __attribute__ ((__gnu_inline__)) void * bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) { size_t __l, __u, __idx; const void *__p; int __comparison; __l = 0; __u = __nmemb; while (__l < __u) { __idx = (__l + __u) / 2; __p = (void *) (((const char *) __base) + (__idx * __size)); __comparison = (*__compar) (__key, __p); if (__comparison < 0) __u = __idx; else if (__comparison > 0) __l = __idx + 1; else return (void *) __p; } return ((void *)0); } # 761 "/usr/include/stdlib.h" 2 3 4 extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 775 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); # 812 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) __attribute__ ((__warn_unused_result__)); extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) __attribute__ ((__warn_unused_result__)); extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) __attribute__ ((__warn_unused_result__)); extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) __attribute__ ((__warn_unused_result__)); extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) __attribute__ ((__warn_unused_result__)); extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) __attribute__ ((__warn_unused_result__)); extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 899 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) __attribute__ ((__warn_unused_result__)); # 951 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 3 4 extern __inline __attribute__ ((__gnu_inline__)) double __attribute__ ((__nothrow__ , __leaf__)) atof (const char *__nptr) { return strtod (__nptr, (char **) ((void *)0)); } # 956 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/stdlib.h" 3 4 extern char *__realpath_chk (const char *__restrict __name, char *__restrict __resolved, size_t __resolvedlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern char *__realpath_alias (const char *__restrict __name, char *__restrict __resolved) __asm__ ("" "realpath") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern char *__realpath_chk_warn (const char *__restrict __name, char *__restrict __resolved, size_t __resolvedlen) __asm__ ("" "__realpath_chk") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)) __attribute__((__warning__ ("second argument of realpath must be either NULL or at " "least PATH_MAX bytes long buffer"))) ; extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) __attribute__ ((__warn_unused_result__)) char * __attribute__ ((__nothrow__ , __leaf__)) realpath (const char *__restrict __name, char *__restrict __resolved) { if (__builtin_object_size (__resolved, 2 > 1) != (size_t) -1) { return __realpath_chk (__name, __resolved, __builtin_object_size (__resolved, 2 > 1)); } return __realpath_alias (__name, __resolved); } extern int __ptsname_r_chk (int __fd, char *__buf, size_t __buflen, size_t __nreal) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int __ptsname_r_alias (int __fd, char *__buf, size_t __buflen) __asm__ ("" "ptsname_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int __ptsname_r_chk_warn (int __fd, char *__buf, size_t __buflen, size_t __nreal) __asm__ ("" "__ptsname_r_chk") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) __attribute__((__warning__ ("ptsname_r called with buflen bigger than " "size of buf"))) ; extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) int __attribute__ ((__nothrow__ , __leaf__)) ptsname_r (int __fd, char *__buf, size_t __buflen) { if (__builtin_object_size (__buf, 2 > 1) != (size_t) -1) { if (!__builtin_constant_p (__buflen)) return __ptsname_r_chk (__fd, __buf, __buflen, __builtin_object_size (__buf, 2 > 1)); if (__buflen > __builtin_object_size (__buf, 2 > 1)) return __ptsname_r_chk_warn (__fd, __buf, __buflen, __builtin_object_size (__buf, 2 > 1)); } return __ptsname_r_alias (__fd, __buf, __buflen); } extern int __wctomb_chk (char *__s, wchar_t __wchar, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern int __wctomb_alias (char *__s, wchar_t __wchar) __asm__ ("" "wctomb") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) __attribute__ ((__warn_unused_result__)) int __attribute__ ((__nothrow__ , __leaf__)) wctomb (char *__s, wchar_t __wchar) { if (__builtin_object_size (__s, 2 > 1) != (size_t) -1 && 16 > __builtin_object_size (__s, 2 > 1)) return __wctomb_chk (__s, __wchar, __builtin_object_size (__s, 2 > 1)); return __wctomb_alias (__s, __wchar); } extern size_t __mbstowcs_chk (wchar_t *__restrict __dst, const char *__restrict __src, size_t __len, size_t __dstlen) __attribute__ ((__nothrow__ , __leaf__)); extern size_t __mbstowcs_alias (wchar_t *__restrict __dst, const char *__restrict __src, size_t __len) __asm__ ("" "mbstowcs") __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t __mbstowcs_chk_warn (wchar_t *__restrict __dst, const char *__restrict __src, size_t __len, size_t __dstlen) __asm__ ("" "__mbstowcs_chk") __attribute__ ((__nothrow__ , __leaf__)) __attribute__((__warning__ ("mbstowcs called with dst buffer smaller than len " "* sizeof (wchar_t)"))) ; extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) size_t __attribute__ ((__nothrow__ , __leaf__)) mbstowcs (wchar_t *__restrict __dst, const char *__restrict __src, size_t __len) { if (__builtin_object_size (__dst, 2 > 1) != (size_t) -1) { if (!__builtin_constant_p (__len)) return __mbstowcs_chk (__dst, __src, __len, __builtin_object_size (__dst, 2 > 1) / sizeof (wchar_t)); if (__len > __builtin_object_size (__dst, 2 > 1) / sizeof (wchar_t)) return __mbstowcs_chk_warn (__dst, __src, __len, __builtin_object_size (__dst, 2 > 1) / sizeof (wchar_t)); } return __mbstowcs_alias (__dst, __src, __len); } extern size_t __wcstombs_chk (char *__restrict __dst, const wchar_t *__restrict __src, size_t __len, size_t __dstlen) __attribute__ ((__nothrow__ , __leaf__)); extern size_t __wcstombs_alias (char *__restrict __dst, const wchar_t *__restrict __src, size_t __len) __asm__ ("" "wcstombs") __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t __wcstombs_chk_warn (char *__restrict __dst, const wchar_t *__restrict __src, size_t __len, size_t __dstlen) __asm__ ("" "__wcstombs_chk") __attribute__ ((__nothrow__ , __leaf__)) __attribute__((__warning__ ("wcstombs called with dst buffer smaller than len"))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) size_t __attribute__ ((__nothrow__ , __leaf__)) wcstombs (char *__restrict __dst, const wchar_t *__restrict __src, size_t __len) { if (__builtin_object_size (__dst, 2 > 1) != (size_t) -1) { if (!__builtin_constant_p (__len)) return __wcstombs_chk (__dst, __src, __len, __builtin_object_size (__dst, 2 > 1)); if (__len > __builtin_object_size (__dst, 2 > 1)) return __wcstombs_chk_warn (__dst, __src, __len, __builtin_object_size (__dst, 2 > 1)); } return __wcstombs_alias (__dst, __src, __len); } # 960 "/usr/include/stdlib.h" 2 3 4 # 968 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.c" 2 Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:593) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:593) Locate a functional CUDA compiler Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /home/lucasogura/nvcc...not found Checking for program /home/lucasogura/petsc/bin/win32fe/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /home/lucasogura/nvcc...not found Checking for program /home/lucasogura/petsc/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:631) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:631) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:743) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:743) Locate a functional Cxx compiler Checking for program /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx...found Defined make macro "CXX" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx" Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:781) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:781) Locate a functional Cxx preprocessor Checking for program /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx...found Defined make macro "CXXCPP" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -E" Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -E -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-8RbPfA/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-8RbPfA/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.8/cstdlib" 1 3 # 39 "/usr/include/c++/4.8/cstdlib" 3 # 40 "/usr/include/c++/4.8/cstdlib" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 1 3 # 184 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 426 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 1 3 # 39 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 2 3 # 427 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 2 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/cpu_defines.h" 1 3 # 430 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 2 3 # 42 "/usr/include/c++/4.8/cstdlib" 2 3 # 72 "/usr/include/c++/4.8/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 32 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () __attribute__ ((__warn_unused_result__)); extern double atof (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern int atoi (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern long int atol (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); __extension__ extern long long int atoll (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); # 235 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 236 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern unsigned long int strtoul_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern long long int strtoll_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern unsigned long long int strtoull_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern double strtod_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern float strtof_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern long double strtold_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__leaf__)) atoi (const char *__nptr) throw () { return (int) strtol (__nptr, (char **) __null, 10); } extern __inline __attribute__ ((__gnu_inline__)) long int __attribute__ ((__leaf__)) atol (const char *__nptr) throw () { return strtol (__nptr, (char **) __null, 10); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) long long int __attribute__ ((__leaf__)) atoll (const char *__nptr) throw () { return strtoll (__nptr, (char **) __null, 10); } # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () __attribute__ ((__warn_unused_result__)); extern long int a64l (const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 extern "C" { typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 54 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern "C" { # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 1 "/usr/include/x86_64-linux-gnu/bits/select2.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select2.h" 3 4 extern long int __fdelt_chk (long int __d); extern long int __fdelt_warn (long int __d) __attribute__((__warning__ ("bit outside of fd_set selected"))); # 129 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 } # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__leaf__)) gnu_dev_major (unsigned long long int __dev) throw () { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__leaf__)) gnu_dev_minor (unsigned long long int __dev) throw () { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } } # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 } # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__warn_unused_result__)); extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__warn_unused_result__)); extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__warn_unused_result__)); extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern void *aligned_alloc (size_t __alignment, size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) __attribute__ ((__warn_unused_result__)); extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern char *secure_getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))); # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 630 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 652 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 674 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 684 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 694 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 706 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern int system (const char *__command) __attribute__ ((__warn_unused_result__)); extern char *canonicalize_file_name (const char *__name) throw () __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw () __attribute__ ((__warn_unused_result__)); typedef int (*__compar_fn_t) (const void *, const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (const void *, const void *, void *); extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) __attribute__ ((__warn_unused_result__)); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h" 1 3 4 # 19 "/usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h" 3 4 extern __inline __attribute__ ((__gnu_inline__)) void * bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) { size_t __l, __u, __idx; const void *__p; int __comparison; __l = 0; __u = __nmemb; while (__l < __u) { __idx = (__l + __u) / 2; __p = (void *) (((const char *) __base) + (__idx * __size)); __comparison = (*__compar) (__key, __p); if (__comparison < 0) __u = __idx; else if (__comparison > 0) __l = __idx + 1; else return (void *) __p; } return __null; } # 761 "/usr/include/stdlib.h" 2 3 4 extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); extern long int labs (long int __x) throw () __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) __attribute__ ((__warn_unused_result__)); # 812 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) __attribute__ ((__warn_unused_result__)); extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) __attribute__ ((__warn_unused_result__)); extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) __attribute__ ((__warn_unused_result__)); extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) __attribute__ ((__warn_unused_result__)); extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) __attribute__ ((__warn_unused_result__)); extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) __attribute__ ((__warn_unused_result__)); extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) throw (); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw (); extern int wctomb (char *__s, wchar_t __wchar) throw (); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (const char *__response) throw () __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 899 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) __attribute__ ((__warn_unused_result__)); extern void setkey (const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) __attribute__ ((__warn_unused_result__)); extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () __attribute__ ((__warn_unused_result__)); extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 3 4 extern __inline __attribute__ ((__gnu_inline__)) double __attribute__ ((__leaf__)) atof (const char *__nptr) throw () { return strtod (__nptr, (char **) __null); } # 956 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/stdlib.h" 3 4 extern char *__realpath_chk (const char *__restrict __name, char *__restrict __resolved, size_t __resolvedlen) throw () __attribute__ ((__warn_unused_result__)); extern char *__realpath_alias (const char *__restrict __name, char *__restrict __resolved) throw () __asm__ ("" "realpath") __attribute__ ((__warn_unused_result__)); extern char *__realpath_chk_warn (const char *__restrict __name, char *__restrict __resolved, size_t __resolvedlen) throw () __asm__ ("" "__realpath_chk") __attribute__ ((__warn_unused_result__)) __attribute__((__warning__ ("second argument of realpath must be either NULL or at " "least PATH_MAX bytes long buffer"))) ; extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) __attribute__ ((__warn_unused_result__)) char * __attribute__ ((__leaf__)) realpath (const char *__restrict __name, char *__restrict __resolved) throw () { if (__builtin_object_size (__resolved, 2 > 1) != (size_t) -1) { return __realpath_chk (__name, __resolved, __builtin_object_size (__resolved, 2 > 1)); } return __realpath_alias (__name, __resolved); } extern int __ptsname_r_chk (int __fd, char *__buf, size_t __buflen, size_t __nreal) throw () __attribute__ ((__nonnull__ (2))); extern int __ptsname_r_alias (int __fd, char *__buf, size_t __buflen) throw () __asm__ ("" "ptsname_r") __attribute__ ((__nonnull__ (2))); extern int __ptsname_r_chk_warn (int __fd, char *__buf, size_t __buflen, size_t __nreal) throw () __asm__ ("" "__ptsname_r_chk") __attribute__ ((__nonnull__ (2))) __attribute__((__warning__ ("ptsname_r called with buflen bigger than " "size of buf"))) ; extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) int __attribute__ ((__leaf__)) ptsname_r (int __fd, char *__buf, size_t __buflen) throw () { if (__builtin_object_size (__buf, 2 > 1) != (size_t) -1) { if (!__builtin_constant_p (__buflen)) return __ptsname_r_chk (__fd, __buf, __buflen, __builtin_object_size (__buf, 2 > 1)); if (__buflen > __builtin_object_size (__buf, 2 > 1)) return __ptsname_r_chk_warn (__fd, __buf, __buflen, __builtin_object_size (__buf, 2 > 1)); } return __ptsname_r_alias (__fd, __buf, __buflen); } extern int __wctomb_chk (char *__s, wchar_t __wchar, size_t __buflen) throw () __attribute__ ((__warn_unused_result__)); extern int __wctomb_alias (char *__s, wchar_t __wchar) throw () __asm__ ("" "wctomb") __attribute__ ((__warn_unused_result__)); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) __attribute__ ((__warn_unused_result__)) int __attribute__ ((__leaf__)) wctomb (char *__s, wchar_t __wchar) throw () { if (__builtin_object_size (__s, 2 > 1) != (size_t) -1 && 16 > __builtin_object_size (__s, 2 > 1)) return __wctomb_chk (__s, __wchar, __builtin_object_size (__s, 2 > 1)); return __wctomb_alias (__s, __wchar); } extern size_t __mbstowcs_chk (wchar_t *__restrict __dst, const char *__restrict __src, size_t __len, size_t __dstlen) throw (); extern size_t __mbstowcs_alias (wchar_t *__restrict __dst, const char *__restrict __src, size_t __len) throw () __asm__ ("" "mbstowcs") ; extern size_t __mbstowcs_chk_warn (wchar_t *__restrict __dst, const char *__restrict __src, size_t __len, size_t __dstlen) throw () __asm__ ("" "__mbstowcs_chk") __attribute__((__warning__ ("mbstowcs called with dst buffer smaller than len " "* sizeof (wchar_t)"))) ; extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) size_t __attribute__ ((__leaf__)) mbstowcs (wchar_t *__restrict __dst, const char *__restrict __src, size_t __len) throw () { if (__builtin_object_size (__dst, 2 > 1) != (size_t) -1) { if (!__builtin_constant_p (__len)) return __mbstowcs_chk (__dst, __src, __len, __builtin_object_size (__dst, 2 > 1) / sizeof (wchar_t)); if (__len > __builtin_object_size (__dst, 2 > 1) / sizeof (wchar_t)) return __mbstowcs_chk_warn (__dst, __src, __len, __builtin_object_size (__dst, 2 > 1) / sizeof (wchar_t)); } return __mbstowcs_alias (__dst, __src, __len); } extern size_t __wcstombs_chk (char *__restrict __dst, const wchar_t *__restrict __src, size_t __len, size_t __dstlen) throw (); extern size_t __wcstombs_alias (char *__restrict __dst, const wchar_t *__restrict __src, size_t __len) throw () __asm__ ("" "wcstombs") ; extern size_t __wcstombs_chk_warn (char *__restrict __dst, const wchar_t *__restrict __src, size_t __len, size_t __dstlen) throw () __asm__ ("" "__wcstombs_chk") __attribute__((__warning__ ("wcstombs called with dst buffer smaller than len"))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) __attribute__ ((__artificial__)) size_t __attribute__ ((__leaf__)) wcstombs (char *__restrict __dst, const wchar_t *__restrict __src, size_t __len) throw () { if (__builtin_object_size (__dst, 2 > 1) != (size_t) -1) { if (!__builtin_constant_p (__len)) return __wcstombs_chk (__dst, __src, __len, __builtin_object_size (__dst, 2 > 1)); if (__len > __builtin_object_size (__dst, 2 > 1)) return __wcstombs_chk_warn (__dst, __src, __len, __builtin_object_size (__dst, 2 > 1)); } return __wcstombs_alias (__dst, __src, __len); } # 960 "/usr/include/stdlib.h" 2 3 4 # 968 "/usr/include/stdlib.h" 3 4 } # 73 "/usr/include/c++/4.8/cstdlib" 2 3 # 114 "/usr/include/c++/4.8/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } } # 196 "/usr/include/c++/4.8/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 228 "/usr/include/c++/4.8/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-8RbPfA/config.setCompilers/conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:898) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:898) Locate a functional Fortran compiler Checking for program /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90...found Defined make macro "FC" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90" Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:917) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:917) Make sure fortran comment "!" works Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:980) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:980) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid C linker flag -fPIC Adding C compiler flag -fPIC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid FC linker flag -fPIC Adding FC compiler flag -fPIC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1013) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1013) ================================================================================ TEST checkArchiver from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1112) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1112) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-8RbPfA/config.setCompilers/libconf1.a /tmp/petsc-8RbPfA/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-8RbPfA/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-8RbPfA/config.setCompilers/libconf1.a /tmp/petsc-8RbPfA/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-8RbPfA/config.setCompilers/libconf1.a Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -L/tmp/petsc-8RbPfA/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1223) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1223) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc using flags ['-shared'] Checking for program /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid C linker flag -shared Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -L/tmp/petsc-8RbPfA/config.setCompilers -lconftest Using shared linker /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1301) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1301) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -Wl,-rpath,/home/lucasogura/petsc -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/lucasogura/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -Wl,-rpath,/home/lucasogura/petsc /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/lucasogura/petsc Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -Wl,-rpath,/home/lucasogura/petsc -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/lucasogura/petsc Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1336) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1336) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1385) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1385) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 22 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 28 "/usr/include/dlfcn.h" 2 3 4 # 52 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 82 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 188 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC /tmp/petsc-8RbPfA/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc using flags ['-shared'] Checking for program /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.setCompilers/conftest.c:11:3: warning: implicit declaration of function ‘printf’ [-Wimplicit-function-declaration] printf("Could not load symbol\n"); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] /tmp/petsc-8RbPfA/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Invalid return from foo()\n"); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Could not close library\n"); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-8RbPfA/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -ldl Using dynamic linker /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/lucasogura/petsc/config/BuildSystem/config/setCompilers.py:1431) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1431) Output module data as defines and substitutions Substituting "CC" with "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ float * restrict x;; ^ /tmp/petsc-8RbPfA/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function) /tmp/petsc-8RbPfA/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.compilers/conftest.c:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Defined "C_RESTRICT" to " __restrict__" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Defined "C_STATIC_INLINE" to "static inline" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.compilers/conftest -v -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl stdout: mpicc for MPICH version 3.1 Possible ERROR while running linker: stdout: mpicc for MPICH version 3.1stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-o' '/tmp/petsc-8RbPfA/config.compilers/conftest' '-v' '-fPIC' '-I' '/home/lucasogura/petsc/arch-linux2-c-opt/include' '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-8RbPfA/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/petsc-8RbPfA/config.compilers/conftest.o -ldl -rpath /home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language FC Pushing language C Trying C compiler flag -MMD -MP Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -MMD -MP /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -MMD -MP /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC -MMD -MP /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-8RbPfA/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’ float * restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-8RbPfA/config.compilers/conftest.cc:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Defined "CXX_RESTRICT" to " __restrict__" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Defined "HAVE_CXX_NAMESPACE" to "1" Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Defined "CXX_STATIC_INLINE" to "static inline" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/config.compilers/conftest -v /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl stdout: mpicxx for MPICH version 3.1 Possible ERROR while running linker: stdout: mpicxx for MPICH version 3.1stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-fPIC' '-o' '/tmp/petsc-8RbPfA/config.compilers/conftest' '-v' '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.8' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-I' '/home/lucasogura/petsc/arch-linux2-c-opt/include' '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-8RbPfA/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/petsc-8RbPfA/config.compilers/conftest.o -rpath /home/lucasogura/petsc/arch-linux2-c-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.8 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -rpath /home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -lmpichcxx -rpath /home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpichcxx -lstdc++ -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpichcxx -lstdc++ -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language C Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpichcxx -lstdc++ -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpichcxx -lstdc++ -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language FC Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/include/c++/4.8/random:35:0, from /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:4: /usr/include/c++/4.8/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:10:30: error: expected ‘;’ before ‘rd’ std::random_device rd; ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:11:24: error: expected ‘;’ before ‘mt’ std::mt19937 mt(rd()); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:36: error: expected ‘;’ before ‘double’ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.8/random:35:0, from /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:4: /usr/include/c++/4.8/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:10:30: error: expected ‘;’ before ‘rd’ std::random_device rd; ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:11:24: error: expected ‘;’ before ‘mt’ std::mt19937 mt(rd()); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:12:36: error: expected ‘;’ before ‘double’ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ PETSc Error: No output file produced Popping language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Testing Fortran mangling type underscore with code void d1chk_(void){return;} Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/confc.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/confc.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.o: In function `main': conftest.F:(.text+0x20): undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -DTesting /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -V Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.compilers/conftest -v -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl stdout: mpif90 for MPICH version 3.1 Possible ERROR while running linker: stdout: mpif90 for MPICH version 3.1stderr: Driving: gfortran -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -o /tmp/petsc-8RbPfA/config.compilers/conftest -v -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichf90 -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc -specs=/usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec Using built-in specs. Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec rename spec lib to liborig COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O' '-o' '/tmp/petsc-8RbPfA/config.compilers/conftest' '-v' '-fPIC' '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.8' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-I' '/home/lucasogura/petsc/arch-linux2-c-opt/include' '-I' '/home/lucasogura/petsc/arch-linux2-c-opt/include' '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib' '-shared-libgcc' '-specs=/usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-8RbPfA/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/petsc-8RbPfA/config.compilers/conftest.o -rpath /home/lucasogura/petsc/arch-linux2-c-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.8 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -rpath /home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -lmpichf90 -rpath /home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/conftest -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language C Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/config.setCompilers/conftest /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Executing: /tmp/petsc-8RbPfA/config.setCompilers/conftest Popping language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/cxxobj.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s /tmp/petsc-8RbPfA/config.compilers/confc.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "USING_F90" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.compilers/conftest.F: In function ‘main’: /tmp/petsc-8RbPfA/config.compilers/conftest.F:4:0: warning: ‘carray.dim[0].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized] Type(C_Ptr),Dimension(:),Pointer :: CArray ^ /tmp/petsc-8RbPfA/config.compilers/conftest.F:9:0: warning: ‘carray.dim[0].lbound’ may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-8RbPfA/config.compilers/conftest.F:4:0: note: ‘carray.dim[0].lbound’ was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ /tmp/petsc-8RbPfA/config.compilers/conftest.F:9:0: warning: ‘carray.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-8RbPfA/config.compilers/conftest.F:4:0: note: ‘carray.offset’ was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "USING_F2003" to "1" Executing: uname -s stdout: Linux Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); abort(); } return; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.compilers/conftest -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/fooobj.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.compilers/conftest Executing: /tmp/petsc-8RbPfA/config.compilers/conftest stdout: arrays [0x7fff36bf9890 0x7fff36bf9890 0x7fff36bf9890] arrays [0x7fff36bf9840 0x7fff36bf97f0 0x7fff36bf9840] pointers do not match! [0x7f3f04301740 0x7fff36bf9890] [0x7fffffff] ERROR while running executable: Could not execute "/tmp/petsc-8RbPfA/config.compilers/conftest": arrays [0x7fff36bf9890 0x7fff36bf9890 0x7fff36bf9890] arrays [0x7fff36bf9840 0x7fff36bf97f0 0x7fff36bf9840] pointers do not match! [0x7f3f04301740 0x7fff36bf9890] [0x7fffffff] Program received signal SIGABRT: Process abort signal. Backtrace for this error: #0 0x7F3F03DE67D7 #1 0x7F3F03DE6DDE #2 0x7F3F03A3DFEF #3 0x7F3F03A3DF79 #4 0x7F3F03A41387 #5 0x400B9B in f90ptrtest_ #6 0x400A94 in MAIN__ at conftest.F:? Aborted (core dumped) Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.compilers/conftest -I/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.o /tmp/petsc-8RbPfA/config.compilers/configtest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -module /tmp/petsc-8RbPfA/config.compilers/confdir -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-module’ Source: module configtest integer testint parameter (testint = 42) end module configtest Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -module:/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-8RbPfA/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fmod=/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-fmod=/tmp/petsc-8RbPfA/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.compilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -J/tmp/petsc-8RbPfA/config.compilers/confdir -fPIC /tmp/petsc-8RbPfA/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/lucasogura/petsc/config/BuildSystem/config/compilerFlags.py:71) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:71) Get the default compiler flags Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc --version stdout: gcc (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc gcc (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -show stdout: gcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread Defined make macro "MPICC_SHOW" to "gcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread" Trying C compiler flag -Wall Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -show stdout: gcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread Defined make macro "MPICC_SHOW" to "gcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread" Trying C compiler flag -O Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O Popping language C Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx --version stdout: g++ (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx g++ (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -show stdout: g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichcxx -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread Defined make macro "MPICXX_SHOW" to "g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichcxx -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread" Trying Cxx compiler flag -Wall Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -show stdout: g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichcxx -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread Defined make macro "MPICXX_SHOW" to "g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichcxx -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread" Trying Cxx compiler flag -O Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Popping language Cxx Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -show stdout: gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichf90 -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichf90 -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread" Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Trying FC compiler flag -Wall Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Trying FC compiler flag -ffree-line-length-0 Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -show stdout: gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichf90 -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichf90 -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread" Trying FC compiler flag -O Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -O Popping language FC Checking for library in Download MPI: [] Contents: ['lib', 'externalpackages', 'share', 'conf', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language C Checking for headers Download MPI: ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" 1 # 98 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef int MPI_Datatype; # 281 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 364 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; # 396 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; # 424 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef int MPI_Errhandler; # 445 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); # 499 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18, MPI_COMBINER_HINDEXED_BLOCK = 19 }; typedef int MPI_Info; # 549 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; # 568 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef long long MPI_Offset; typedef struct MPI_Status { int count_lo; int count_hi_and_cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum_s; struct MPIR_T_cvar_handle_s; struct MPIR_T_pvar_handle_s; struct MPIR_T_pvar_session_s; typedef struct MPIR_T_enum_s * MPI_T_enum; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES; # 604 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t; typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO } MPIR_T_bind_t; typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_CONSTANT = 60438, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t; typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIR_T_PVAR_CLASS_FIRST = 240, MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC, MPIR_T_PVAR_CLASS_LAST, MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t; # 726 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; # 745 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); # 860 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); # 880 "/home/lucasogura/petsc/arch-linux2-c-opt/include/mpi.h" int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count) ; int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Buffer_attach(void *buffer, int size) ; int MPI_Buffer_detach(void *buffer_addr, int *size) ; int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Wait(MPI_Request *request, MPI_Status *status) ; int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status) ; int MPI_Request_free(MPI_Request *request) ; int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status) ; int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status) ; int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]) ; int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]) ; int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]) ; int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]) ; int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status) ; int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Cancel(MPI_Request *request) ; int MPI_Test_cancelled(const MPI_Status *status, int *flag) ; int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Start(MPI_Request *request) ; int MPI_Startall(int count, MPI_Request array_of_requests[]) ; int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype) ; int MPI_Address(const void *location, MPI_Aint *address) ; int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent) ; int MPI_Type_size(MPI_Datatype datatype, int *size) ; int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement) ; int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement) ; int MPI_Type_commit(MPI_Datatype *datatype) ; int MPI_Type_free(MPI_Datatype *datatype) ; int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count) ; int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size) ; int MPI_Barrier(MPI_Comm comm) ; int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm) ; int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op) ; int MPI_Op_free(MPI_Op *op) ; int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Group_size(MPI_Group group, int *size) ; int MPI_Group_rank(MPI_Group group, int *rank) ; int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]) ; int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result) ; int MPI_Comm_group(MPI_Comm comm, MPI_Group *group) ; int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup) ; int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup) ; int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup) ; int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup) ; int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup) ; int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup) ; int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup) ; int MPI_Group_free(MPI_Group *group) ; int MPI_Comm_size(MPI_Comm comm, int *size) ; int MPI_Comm_rank(MPI_Comm comm, int *rank) ; int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result) ; int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm) ; int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm) ; int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm) ; int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm) ; int MPI_Comm_free(MPI_Comm *comm) ; int MPI_Comm_test_inter(MPI_Comm comm, int *flag) ; int MPI_Comm_remote_size(MPI_Comm comm, int *size) ; int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group) ; int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm) ; int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm) ; int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) ; int MPI_Keyval_free(int *keyval) ; int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) ; int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ; int MPI_Attr_delete(MPI_Comm comm, int keyval) ; int MPI_Topo_test(MPI_Comm comm, int *status) ; int MPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart) ; int MPI_Dims_create(int nnodes, int ndims, int dims[]) ; int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph) ; int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges) ; int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]) ; int MPI_Cartdim_get(MPI_Comm comm, int *ndims) ; int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]) ; int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank) ; int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]) ; int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors) ; int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]) ; int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest) ; int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm) ; int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank) ; int MPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank) ; int MPI_Get_processor_name(char *name, int *resultlen) ; int MPI_Get_version(int *version, int *subversion) ; int MPI_Get_library_version(char *version, int *resultlen) ; int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) ; int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ; int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) ; int MPI_Errhandler_free(MPI_Errhandler *errhandler) ; int MPI_Error_string(int errorcode, char *string, int *resultlen) ; int MPI_Error_class(int errorcode, int *errorclass) ; double MPI_Wtime(void) ; double MPI_Wtick(void) ; int MPI_Init(int *argc, char ***argv) ; int MPI_Finalize(void) ; int MPI_Initialized(int *flag) ; int MPI_Abort(MPI_Comm comm, int errorcode) ; int MPI_Pcontrol(const int level, ...) ; int MPIR_Dup_fn(MPI_Comm oldcomm, int keyval, void *extra_state, void *attribute_val_in, void *attribute_val_out, int *flag); int MPI_Close_port(const char *port_name) ; int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm) ; int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm) ; int MPI_Comm_disconnect(MPI_Comm *comm) ; int MPI_Comm_get_parent(MPI_Comm *parent) ; int MPI_Comm_join(int fd, MPI_Comm *intercomm) ; int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]) ; int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]) ; int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name) ; int MPI_Open_port(MPI_Info info, char *port_name) ; int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name) ; int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name) ; int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info) ; int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info) ; int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Win_complete(MPI_Win win) ; int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win) ; int MPI_Win_fence(int assert, MPI_Win win) ; int MPI_Win_free(MPI_Win *win) ; int MPI_Win_get_group(MPI_Win win, MPI_Group *group) ; int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win) ; int MPI_Win_post(MPI_Group group, int assert, MPI_Win win) ; int MPI_Win_start(MPI_Group group, int assert, MPI_Win win) ; int MPI_Win_test(MPI_Win win, int *flag) ; int MPI_Win_unlock(int rank, MPI_Win win) ; int MPI_Win_wait(MPI_Win win) ; int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win) ; int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win) ; int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr) ; int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win) ; int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size) ; int MPI_Win_detach(MPI_Win win, const void *base) ; int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used) ; int MPI_Win_set_info(MPI_Win win, MPI_Info info) ; int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int MPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Win_lock_all(int assert, MPI_Win win) ; int MPI_Win_unlock_all(MPI_Win win) ; int MPI_Win_flush(int rank, MPI_Win win) ; int MPI_Win_flush_all(MPI_Win win) ; int MPI_Win_flush_local(int rank, MPI_Win win) ; int MPI_Win_flush_local_all(MPI_Win win) ; int MPI_Win_sync(MPI_Win win) ; int MPI_Add_error_class(int *errorclass) ; int MPI_Add_error_code(int errorclass, int *errorcode) ; int MPI_Add_error_string(int errorcode, const char *string) ; int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode) ; int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state) ; int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval) ; int MPI_Comm_free_keyval(int *comm_keyval) ; int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag) ; int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen) ; int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val) ; int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name) ; int MPI_File_call_errhandler(MPI_File fh, int errorcode) ; int MPI_Grequest_complete(MPI_Request request) ; int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request) ; int MPI_Init_thread(int *argc, char ***argv, int required, int *provided) ; int MPI_Is_thread_main(int *flag) ; int MPI_Query_thread(int *provided) ; int MPI_Status_set_cancelled(MPI_Status *status, int flag) ; int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count) ; int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state) ; int MPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval) ; int MPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_free_keyval(int *type_keyval) ; int MPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag) ; int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]) ; int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner) ; int MPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen) ; int MPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val) ; int MPI_Type_set_name(MPI_Datatype datatype, const char *type_name) ; int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype) ; int MPI_Win_call_errhandler(MPI_Win win, int errorcode) ; int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state) ; int MPI_Win_delete_attr(MPI_Win win, int win_keyval) ; int MPI_Win_free_keyval(int *win_keyval) ; int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag) ; int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen) ; int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val) ; int MPI_Win_set_name(MPI_Win win, const char *win_name) ; int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr) ; int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler) ; int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler) ; int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler) ; int MPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler) ; int MPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler) ; int MPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler) ; int MPI_Finalized(int *flag) ; int MPI_Free_mem(void *base) ; int MPI_Get_address(const void *location, MPI_Aint *address) ; int MPI_Info_create(MPI_Info *info) ; int MPI_Info_delete(MPI_Info info, const char *key) ; int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo) ; int MPI_Info_free(MPI_Info *info) ; int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag) ; int MPI_Info_get_nkeys(MPI_Info info, int *nkeys) ; int MPI_Info_get_nthkey(MPI_Info info, int n, char *key) ; int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag) ; int MPI_Info_set(MPI_Info info, const char *key, const char *value) ; int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size) ; int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status) ; int MPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status) ; int MPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status) ; int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype) ; int MPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype) ; int MPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent) ; int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent) ; int MPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler) ; int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler) ; int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler) ; int MPI_Type_create_f90_integer(int range, MPI_Datatype *newtype) ; int MPI_Type_create_f90_real(int precision, int range, MPI_Datatype *newtype) ; int MPI_Type_create_f90_complex(int precision, int range, MPI_Datatype *newtype) ; int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute) ; int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph) ; int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph) ; int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted) ; int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]) ; int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status) ; int MPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status) ; int MPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request) ; int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request) ; int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request) ; int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm) ; int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm) ; int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count) ; int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count) ; int MPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent) ; int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent) ; int MPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size) ; int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm) ; int MPIX_Comm_group_failed(MPI_Comm comm, MPI_Group *failed_group) ; int MPIX_Comm_remote_group_failed(MPI_Comm comm, MPI_Group *failed_group) ; int MPIX_Comm_reenable_anysource(MPI_Comm comm, MPI_Group *failed_group) ; int MPI_T_init_thread(int required, int *provided) ; int MPI_T_finalize(void) ; int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len) ; int MPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len) ; int MPI_T_cvar_get_num(int *num_cvar) ; int MPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope) ; int MPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count) ; int MPI_T_cvar_handle_free(MPI_T_cvar_handle *handle) ; int MPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf) ; int MPI_T_cvar_write(MPI_T_cvar_handle handle, void *buf) ; int MPI_T_pvar_get_num(int *num_pvar) ; int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic) ; int MPI_T_pvar_session_create(MPI_T_pvar_session *session) ; int MPI_T_pvar_session_free(MPI_T_pvar_session *session) ; int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count) ; int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle) ; int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle) ; int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle) ; int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf) ; int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf) ; int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle) ; int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf) ; int MPI_T_category_get_num(int *num_cat) ; int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories) ; int MPI_T_category_get_cvars(int cat_index, int len, int indices[]) ; int MPI_T_category_get_pvars(int cat_index, int len, int indices[]) ; int MPI_T_category_get_categories(int cat_index, int len, int indices[]) ; int MPI_T_category_changed(int *stamp) ; int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Buffer_attach(void *buffer, int size); int PMPI_Buffer_detach(void *buffer_addr, int *size); int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Wait(MPI_Request *request, MPI_Status *status); int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int PMPI_Request_free(MPI_Request *request); int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int PMPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int PMPI_Cancel(MPI_Request *request); int PMPI_Test_cancelled(const MPI_Status *status, int *flag); int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Start(MPI_Request *request); int PMPI_Startall(int count, MPI_Request array_of_requests[]); int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int PMPI_Address(const void *location, MPI_Aint *address); int PMPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int PMPI_Type_size(MPI_Datatype datatype, int *size); int PMPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_commit(MPI_Datatype *datatype); int PMPI_Type_free(MPI_Datatype *datatype); int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int PMPI_Barrier(MPI_Comm comm); int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int PMPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int PMPI_Op_free(MPI_Op *op); int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Group_size(MPI_Group group, int *size); int PMPI_Group_rank(MPI_Group group, int *rank); int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_free(MPI_Group *group); int PMPI_Comm_size(MPI_Comm comm, int *size); int PMPI_Comm_rank(MPI_Comm comm, int *rank); int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int PMPI_Comm_free(MPI_Comm *comm); int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); int PMPI_Comm_remote_size(MPI_Comm comm, int *size); int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int PMPI_Keyval_free(int *keyval); int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int PMPI_Attr_delete(MPI_Comm comm, int keyval); int PMPI_Topo_test(MPI_Comm comm, int *status); int PMPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int PMPI_Dims_create(int nnodes, int ndims, int dims[]); int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int PMPI_Get_processor_name(char *name, int *resultlen); int PMPI_Get_version(int *version, int *subversion); int PMPI_Get_library_version(char *version, int *resultlen); int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Errhandler_free(MPI_Errhandler *errhandler); int PMPI_Error_string(int errorcode, char *string, int *resultlen); int PMPI_Error_class(int errorcode, int *errorclass); double PMPI_Wtime(void); double PMPI_Wtick(void); int PMPI_Init(int *argc, char ***argv); int PMPI_Finalize(void); int PMPI_Initialized(int *flag); int PMPI_Abort(MPI_Comm comm, int errorcode); int PMPI_Pcontrol(const int level, ...); int PMPI_Close_port(const char *port_name); int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_disconnect(MPI_Comm *comm); int PMPI_Comm_get_parent(MPI_Comm *parent); int PMPI_Comm_join(int fd, MPI_Comm *intercomm); int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int PMPI_Open_port(MPI_Info info, char *port_name); int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Win_complete(MPI_Win win); int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_fence(int assert, MPI_Win win); int PMPI_Win_free(MPI_Win *win); int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); Found header files ['mpi.h'] in ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:6:10: warning: unused variable ‘a’ [-Wunused-variable] MPI_Fint a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:182) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:182) Check for functions added to the interface in MPI-2 Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl ================================================================================ TEST configureTypes from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.types/conftest Executing: /tmp/petsc-8RbPfA/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.packages.MPI/conftest Executing: /tmp/petsc-8RbPfA/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.packages.MPI/conftest Executing: /tmp/petsc-8RbPfA/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /tmp/petsc-8RbPfA/config.packages.MPI/conftest Executing: /tmp/petsc-8RbPfA/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:320) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:320) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:633) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:633) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:643) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:643) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.cc: In function ‘void _check_MPI_Finalize()’: /tmp/petsc-8RbPfA/config.libraries/conftest.cc:5:41: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:661) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:661) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' end Checking for fortran mpi_init() Checking for functions [] in library [] [] Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language FC Checking for mpi.mod Checking for functions [] in library [] [] Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:686) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:686) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:9:23: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:9:23: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:9:22: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:9:22: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:9:22: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:9:22: warning: ‘disp’ is used uninitialized in this function [-Wuninitialized] /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:9:22: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:8:18: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:7:10: warning: unused variable ‘info’ [-Wunused-variable] MPI_Info info; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:723) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:723) Find MPI include paths from "mpicc -show" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -show stdout: gcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread compilers: Checking arg gcc compilers: Checking arg -fPIC compilers: Checking arg -Wall compilers: Checking arg -Wwrite-strings compilers: Checking arg -Wno-strict-aliasing compilers: Checking arg -Wno-unknown-pragmas compilers: Checking arg -O compilers: Checking arg -I/home/lucasogura/petsc/arch-linux2-c-opt/include compilers: Found include directory: /home/lucasogura/petsc/arch-linux2-c-opt/include compilers: Checking arg -L/home/lucasogura/petsc/arch-linux2-c-opt/lib compilers: Checking arg -Wl,-rpath compilers: Checking arg -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib compilers: Checking arg -lmpich compilers: Checking arg -lopa compilers: Checking arg -lmpl compilers: Checking arg -lrt compilers: Checking arg -lpthread Checking for functions [MPI_Alltoallw] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language C Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `MPIX_Iallreduce' collect2: error: ld returned 1 exit status Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language C Defined "HAVE_MPICH_CH3_SOCK" to "1" Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language C Defined "HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:132) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:132) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/home/lucasogura/petsc/config/BuildSystem/config/packages/MPI.py:145) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:145) Checking for mpiexec Pushing language C Popping language C Checking for program /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpiexec...found Defined make macro "MPIEXEC" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpiexec" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.packages.MPI/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.packages.MPI/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/petsc-8RbPfA/config.libraries/lib1.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/petsc-8RbPfA/config.libraries/lib2.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpiexec /tmp/petsc-8RbPfA/config.libraries/conftest Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpiexec /tmp/petsc-8RbPfA/config.libraries/conftest Library was shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf-cxx(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.netcdf-cxx(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/home/lucasogura/petsc/config/PETSc/utilities/scalarTypes.py:38) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:38) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_ISNORMAL" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_ISNAN" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_ISINF" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ‘_isnan’ [-Wimplicit-function-declaration] double b = 2.0;int a = _isnan(b); ^ /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0;int a = _isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o: In function `main': conftest.c:(.text+0x12): undefined reference to `_isnan' collect2: error: ld returned 1 exit status Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ‘_finite’ [-Wimplicit-function-declaration] double b = 2.0;int a = _finite(b); ^ /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0;int a = _finite(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes/conftest.o: In function `main': conftest.c:(.text+0x12): undefined reference to `_finite' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/home/lucasogura/petsc/config/PETSc/utilities/scalarTypes.py:78) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:78) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Precision is double ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/home/lucasogura/petsc/config/PETSc/utilities/libraryOptions.py:48) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:48) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/home/lucasogura/petsc/config/PETSc/utilities/libraryOptions.py:97) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:97) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_SIZE" to "PETSC_SIZEOF_SHORT" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.java(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.java(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pami(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.pami(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pcbddc(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.pcbddc(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.tetgen(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.tetgen(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Disabled Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.threadcomm(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.threadcomm(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Generator(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Generator(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hwloc(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.hwloc(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.papi(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.papi(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/home/lucasogura/petsc/config/PETSc/packages/Matlab.py:36) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(config/PETSc/packages/Matlab.py:36) ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MatlabEngine(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.MatlabEngine(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing or if it is needed Checking for program /usr/local/sbin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/games/bfort...not found Checking for program /usr/local/games/bfort...not found Checking for program /home/lucasogura/bfort...not found Checking for program /home/lucasogura/petsc/bin/win32fe/bfort...not found Checking for program /usr/local/sbin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/games/doctext...not found Checking for program /usr/local/games/doctext...not found Checking for program /home/lucasogura/doctext...not found Checking for program /home/lucasogura/petsc/bin/win32fe/doctext...not found Checking for program /usr/local/sbin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/games/mapnames...not found Checking for program /usr/local/games/mapnames...not found Checking for program /home/lucasogura/mapnames...not found Checking for program /home/lucasogura/petsc/bin/win32fe/mapnames...not found Checking for program /usr/local/sbin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/games/bib2html...not found Checking for program /usr/local/games/bib2html...not found Checking for program /home/lucasogura/bib2html...not found Checking for program /home/lucasogura/petsc/bin/win32fe/bib2html...not found Checking for program /usr/local/sbin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/games/pdflatex...not found Checking for program /usr/local/games/pdflatex...not found Checking for program /home/lucasogura/pdflatex...not found Checking for program /home/lucasogura/petsc/bin/win32fe/pdflatex...not found Bfort not found. Installing sowing for FortranStubs Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.sowing(/home/lucasogura/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.sowing(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING in directory starting with sowing Could not locate an existing copy of sowing: ['mpich-3.1'] Downloading sowing =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.16g.tar.gz for SOWING =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.16g.tar.gz to /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_sowing-1.1.16g.tar.gz Extracting /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_sowing-1.1.16g.tar.gz Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages; chmod -R a+r sowing-1.1.16g;find sowing-1.1.16g -type d -name "*" -exec chmod a+rx {} \; Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing-1.1.16g Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing-1.1.16g Have to rebuild sowing, /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/sowing != /home/lucasogura/petsc/arch-linux2-c-opt/conf/sowing Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g && ./configure --prefix=/home/lucasogura/petsc/arch-linux2-c-opt stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... no checking for gs... /usr/bin/gs checking for pnmcrop... no checking for pbmtoxbm... no checking for ppmtogif... no checking for pnmquant... no checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing default commands Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g && make && make install && make clean stdout: (cd src/sys && make ) make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o ranlib ../../lib/libsowing.a make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/sys' (cd src/tohtml && make ) make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/tohtml' gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c tohtml.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c tex2html.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c search.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c texactio.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c rdaux.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c rdindx.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c label.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c scan.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c refmap.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c style.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c dimen.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c userdef.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c tabular.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c biblio.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c environ.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c math.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c rddefs.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c latexinfo.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c accent.c gcc -DPSPATH='"/home/lucasogura/petsc/arch-linux2-c-opt/bin/"' -DBMSOURCE='"/home/lucasogura/petsc/arch-linux2-c-opt/share/"' -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/tohtml' (cd src/bfort && make ) make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/bfort' gcc -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/bfort' (cd src/textfilt && make ) make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/textfilt' (cd src/doctext && make ) make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/doctext' (cd src/textfilt && make ) make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/textfilt' make[1]: Nothing to be done for `ALL'. make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/textfilt' (cd src/mapnames && make ) make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/mapnames' /usr/bin/install -c bin/bib2html /home/lucasogura/petsc/arch-linux2-c-opt/bin/bib2html /usr/bin/install -c src/doctext/doctext /home/lucasogura/petsc/arch-linux2-c-opt/bin/doctext /usr/bin/install -c src/doctext/doc2lt /home/lucasogura/petsc/arch-linux2-c-opt/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /home/lucasogura/petsc/arch-linux2-c-opt/bin/tohtml if [ "`cd bin && pwd`" != "`cd /home/lucasogura/petsc/arch-linux2-c-opt/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /home/lucasogura/petsc/arch-linux2-c-opt/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /home/lucasogura/petsc/arch-linux2-c-opt/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /home/lucasogura/petsc/arch-linux2-c-opt/bin/bfort /usr/bin/install -c src/mapnames/mapnames /home/lucasogura/petsc/arch-linux2-c-opt/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /home/lucasogura/petsc/arch-linux2-c-opt/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /home/lucasogura/petsc/arch-linux2-c-opt/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /home/lucasogura/petsc/arch-linux2-c-opt/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /home/lucasogura/petsc/arch-linux2-c-opt/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /home/lucasogura/petsc/arch-linux2-c-opt/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /home/lucasogura/petsc/arch-linux2-c-opt/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /home/lucasogura/petsc/arch-linux2-c-opt/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /home/lucasogura/petsc/arch-linux2-c-opt/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /home/lucasogura/petsc/arch-linux2-c-opt/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /home/lucasogura/petsc/arch-linux2-c-opt/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /home/lucasogura/petsc/arch-linux2-c-opt/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /home/lucasogura/petsc/arch-linux2-c-opt/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /home/lucasogura/petsc/arch-linux2-c-opt/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /home/lucasogura/petsc/arch-linux2-c-opt/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /home/lucasogura/petsc/arch-linux2-c-opt/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /home/lucasogura/petsc/arch-linux2-c-opt/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /home/lucasogura/petsc/arch-linux2-c-opt/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /home/lucasogura/petsc/arch-linux2-c-opt/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /home/lucasogura/petsc/arch-linux2-c-opt/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /home/lucasogura/petsc/arch-linux2-c-opt/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /home/lucasogura/petsc/arch-linux2-c-opt/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /home/lucasogura/petsc/arch-linux2-c-opt/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /home/lucasogura/petsc/arch-linux2-c-opt/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /home/lucasogura/petsc/arch-linux2-c-opt/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /home/lucasogura/petsc/arch-linux2-c-opt/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /home/lucasogura/petsc/arch-linux2-c-opt/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /home/lucasogura/petsc/arch-linux2-c-opt/share/man/man1/bfort.1 ;\ fi for dir in src docs ; do ( cd $dir && make clean ) ; done make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; make clean ) ; done make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/sys' rm -f *.o *~ make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/sys' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/bfort' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && make clean ) make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/tohtml/testing' /bin/rm -rf test[1-9] test1[0-9] test2[0-9] /bin/rm -f test[1-9].html latex.err up.xbm down.xbm. next.xbm /bin/rm -f test1[0-9].html test2[0-9].html /bin/rm -f test[0-9].htm test[1-2][0-9].htm /bin/rm -f previous.xbm *.hux img*.xbm /bin/rm -f inplace subfiles /bin/rm -f *.ler *.aux *.out make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/tohtml/testing' make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/tohtml' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then make clean ; fi ) make[3]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/doctext/test' /bin/rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit make[3]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/doctext/test' /bin/rm -f doctext\ win32/debug/* make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/doctext' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/textfilt' /bin/rm -f *.o *~ make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/textfilt' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/mapnames' /bin/rm -f *.o *~ mapnames ccc make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/mapnames' make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/bib2html' rm -f tout.htm tout-bib.htm make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src/bib2html' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/src' make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/docs' rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& make clean) make[2]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/docs/doctext' rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf make[2]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/docs/doctext' make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Executing: cp -f /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/sowing /home/lucasogura/petsc/arch-linux2-c-opt/conf/sowing Executing: cp -f /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/sowing /home/lucasogura/petsc/arch-linux2-c-opt/conf/sowing Executing: cp -f /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g/sowing /home/lucasogura/petsc/arch-linux2-c-opt/conf/sowing Defined make macro "BFORT " to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/bfort" Defined make macro "DOCTEXT " to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/doctext" Defined make macro "MAPNAMES " to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mapnames" Defined make macro "BIB2HTML " to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/bib2html" Checking for program /usr/local/sbin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/games/pdflatex...not found Checking for program /usr/local/games/pdflatex...not found Checking for program /home/lucasogura/pdflatex...not found Checking for program /home/lucasogura/petsc/bin/win32fe/pdflatex...not found Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download SOWING: ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.sowing(/home/lucasogura/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.sowing(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C Running /home/lucasogura/petsc/arch-linux2-c-opt/bin/bfort to generate fortran stubs ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PVODE(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.PVODE(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.ssl(/home/lucasogura/petsc/config/PETSc/packages/ssl.py:30) TESTING: configureLibrary from PETSc.packages.ssl(config/PETSc/packages/ssl.py:30) ================================================================================== Checking for a functional ssl Checking for library in Package specific search directory SSL: ['libssl.a', 'libcrypto.a'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library ['libssl.a', 'libcrypto.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lssl -lcrypto -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lssl /usr/bin/ld: cannot find -lcrypto collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory SSL: ['lib64/libssl.a', 'libcrypto.a'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library ['lib64/libssl.a', 'libcrypto.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lssl -lcrypto -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lssl /usr/bin/ld: cannot find -lcrypto collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkSharedLibrary from PETSc.packages.ssl(/home/lucasogura/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.ssl(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.babel(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.opencl(/home/lucasogura/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.opencl(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional opencl Checking for library in User specified OPENCL libraries: ['/opt/AMDAPP/lib/x86_64/libOpenCL.so'] Contents: ['CL', 'OpenVideo', 'GL', 'SDKUtil'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [clGetPlatformIDs] in library ['/opt/AMDAPP/lib/x86_64/libOpenCL.so'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char clGetPlatformIDs(); static void _check_clGetPlatformIDs() { clGetPlatformIDs(); } int main() { _check_clGetPlatformIDs();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/opt/AMDAPP/lib/x86_64 -L/opt/AMDAPP/lib/x86_64 -lOpenCL -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_LIBOPENCL" to "1" Popping language C Checking for headers User specified OPENCL libraries: ['/opt/AMDAPP/include', '/home/lucasogura/petsc/arch-linux2-c-opt/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['CL/cl.h'] in ['/opt/AMDAPP/include', '/home/lucasogura/petsc/arch-linux2-c-opt/include'] Checking include with compiler flags var CPPFLAGS ['/opt/AMDAPP/include', '/home/lucasogura/petsc/arch-linux2-c-opt/include'] Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers -I/opt/AMDAPP/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/opt/AMDAPP/include/CL/cl.h" 1 # 30 "/opt/AMDAPP/include/CL/cl.h" # 1 "/opt/AMDAPP/include/CL/cl_platform.h" 1 # 35 "/opt/AMDAPP/include/CL/cl_platform.h" # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 25 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdint.h" 2 3 4 # 36 "/opt/AMDAPP/include/CL/cl_platform.h" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef int wchar_t; # 38 "/opt/AMDAPP/include/CL/cl_platform.h" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/float.h" 1 3 4 # 39 "/opt/AMDAPP/include/CL/cl_platform.h" 2 # 140 "/opt/AMDAPP/include/CL/cl_platform.h" typedef int8_t cl_char; typedef uint8_t cl_uchar; typedef int16_t cl_short; typedef uint16_t cl_ushort; typedef int32_t cl_int; typedef uint32_t cl_uint; typedef int64_t cl_long; typedef uint64_t cl_ulong; typedef uint16_t cl_half; typedef float cl_float; typedef double cl_double; # 226 "/opt/AMDAPP/include/CL/cl_platform.h" # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 227 "/opt/AMDAPP/include/CL/cl_platform.h" 2 typedef unsigned int cl_GLuint; typedef int cl_GLint; typedef unsigned int cl_GLenum; # 272 "/opt/AMDAPP/include/CL/cl_platform.h" # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/xmmintrin.h" 1 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/xmmintrin.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/mmintrin.h" 1 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/mmintrin.h" 3 4 typedef int __m64 __attribute__ ((__vector_size__ (8), __may_alias__)); typedef int __v2si __attribute__ ((__vector_size__ (8))); typedef short __v4hi __attribute__ ((__vector_size__ (8))); typedef char __v8qi __attribute__ ((__vector_size__ (8))); typedef long long __v1di __attribute__ ((__vector_size__ (8))); typedef float __v2sf __attribute__ ((__vector_size__ (8))); extern __inline void __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_empty (void) { __builtin_ia32_emms (); } extern __inline void __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_empty (void) { _mm_empty (); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cvtsi32_si64 (int __i) { return (__m64) __builtin_ia32_vec_init_v2si (__i, 0); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_from_int (int __i) { return _mm_cvtsi32_si64 (__i); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_from_int64 (long long __i) { return (__m64) __i; } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cvtsi64_m64 (long long __i) { return (__m64) __i; } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cvtsi64x_si64 (long long __i) { return (__m64) __i; } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_set_pi64x (long long __i) { return (__m64) __i; } extern __inline int __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cvtsi64_si32 (__m64 __i) { return __builtin_ia32_vec_ext_v2si ((__v2si)__i, 0); } extern __inline int __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_to_int (__m64 __i) { return _mm_cvtsi64_si32 (__i); } extern __inline long long __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_to_int64 (__m64 __i) { return (long long)__i; } extern __inline long long __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cvtm64_si64 (__m64 __i) { return (long long)__i; } extern __inline long long __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cvtsi64_si64x (__m64 __i) { return (long long)__i; } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_packs_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_packsswb ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_packsswb (__m64 __m1, __m64 __m2) { return _mm_packs_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_packs_pi32 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_packssdw ((__v2si)__m1, (__v2si)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_packssdw (__m64 __m1, __m64 __m2) { return _mm_packs_pi32 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_packs_pu16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_packuswb ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_packuswb (__m64 __m1, __m64 __m2) { return _mm_packs_pu16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_unpackhi_pi8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_punpckhbw ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_punpckhbw (__m64 __m1, __m64 __m2) { return _mm_unpackhi_pi8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_unpackhi_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_punpckhwd ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_punpckhwd (__m64 __m1, __m64 __m2) { return _mm_unpackhi_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_unpackhi_pi32 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_punpckhdq ((__v2si)__m1, (__v2si)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_punpckhdq (__m64 __m1, __m64 __m2) { return _mm_unpackhi_pi32 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_unpacklo_pi8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_punpcklbw ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_punpcklbw (__m64 __m1, __m64 __m2) { return _mm_unpacklo_pi8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_unpacklo_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_punpcklwd ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_punpcklwd (__m64 __m1, __m64 __m2) { return _mm_unpacklo_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_unpacklo_pi32 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_punpckldq ((__v2si)__m1, (__v2si)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_punpckldq (__m64 __m1, __m64 __m2) { return _mm_unpacklo_pi32 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_add_pi8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_paddb ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_paddb (__m64 __m1, __m64 __m2) { return _mm_add_pi8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_add_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_paddw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_paddw (__m64 __m1, __m64 __m2) { return _mm_add_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_add_pi32 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_paddd ((__v2si)__m1, (__v2si)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_paddd (__m64 __m1, __m64 __m2) { return _mm_add_pi32 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_add_si64 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_paddq ((__v1di)__m1, (__v1di)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_adds_pi8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_paddsb ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_paddsb (__m64 __m1, __m64 __m2) { return _mm_adds_pi8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_adds_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_paddsw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_paddsw (__m64 __m1, __m64 __m2) { return _mm_adds_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_adds_pu8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_paddusb ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_paddusb (__m64 __m1, __m64 __m2) { return _mm_adds_pu8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_adds_pu16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_paddusw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_paddusw (__m64 __m1, __m64 __m2) { return _mm_adds_pu16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sub_pi8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_psubb ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psubb (__m64 __m1, __m64 __m2) { return _mm_sub_pi8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sub_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_psubw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psubw (__m64 __m1, __m64 __m2) { return _mm_sub_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sub_pi32 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_psubd ((__v2si)__m1, (__v2si)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psubd (__m64 __m1, __m64 __m2) { return _mm_sub_pi32 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sub_si64 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_psubq ((__v1di)__m1, (__v1di)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_subs_pi8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_psubsb ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psubsb (__m64 __m1, __m64 __m2) { return _mm_subs_pi8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_subs_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_psubsw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psubsw (__m64 __m1, __m64 __m2) { return _mm_subs_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_subs_pu8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_psubusb ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psubusb (__m64 __m1, __m64 __m2) { return _mm_subs_pu8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_subs_pu16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_psubusw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psubusw (__m64 __m1, __m64 __m2) { return _mm_subs_pu16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_madd_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pmaddwd ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pmaddwd (__m64 __m1, __m64 __m2) { return _mm_madd_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_mulhi_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pmulhw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pmulhw (__m64 __m1, __m64 __m2) { return _mm_mulhi_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_mullo_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pmullw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pmullw (__m64 __m1, __m64 __m2) { return _mm_mullo_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sll_pi16 (__m64 __m, __m64 __count) { return (__m64) __builtin_ia32_psllw ((__v4hi)__m, (__v4hi)__count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psllw (__m64 __m, __m64 __count) { return _mm_sll_pi16 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_slli_pi16 (__m64 __m, int __count) { return (__m64) __builtin_ia32_psllwi ((__v4hi)__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psllwi (__m64 __m, int __count) { return _mm_slli_pi16 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sll_pi32 (__m64 __m, __m64 __count) { return (__m64) __builtin_ia32_pslld ((__v2si)__m, (__v2si)__count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pslld (__m64 __m, __m64 __count) { return _mm_sll_pi32 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_slli_pi32 (__m64 __m, int __count) { return (__m64) __builtin_ia32_pslldi ((__v2si)__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pslldi (__m64 __m, int __count) { return _mm_slli_pi32 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sll_si64 (__m64 __m, __m64 __count) { return (__m64) __builtin_ia32_psllq ((__v1di)__m, (__v1di)__count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psllq (__m64 __m, __m64 __count) { return _mm_sll_si64 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_slli_si64 (__m64 __m, int __count) { return (__m64) __builtin_ia32_psllqi ((__v1di)__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psllqi (__m64 __m, int __count) { return _mm_slli_si64 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sra_pi16 (__m64 __m, __m64 __count) { return (__m64) __builtin_ia32_psraw ((__v4hi)__m, (__v4hi)__count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psraw (__m64 __m, __m64 __count) { return _mm_sra_pi16 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_srai_pi16 (__m64 __m, int __count) { return (__m64) __builtin_ia32_psrawi ((__v4hi)__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psrawi (__m64 __m, int __count) { return _mm_srai_pi16 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_sra_pi32 (__m64 __m, __m64 __count) { return (__m64) __builtin_ia32_psrad ((__v2si)__m, (__v2si)__count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psrad (__m64 __m, __m64 __count) { return _mm_sra_pi32 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_srai_pi32 (__m64 __m, int __count) { return (__m64) __builtin_ia32_psradi ((__v2si)__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psradi (__m64 __m, int __count) { return _mm_srai_pi32 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_srl_pi16 (__m64 __m, __m64 __count) { return (__m64) __builtin_ia32_psrlw ((__v4hi)__m, (__v4hi)__count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psrlw (__m64 __m, __m64 __count) { return _mm_srl_pi16 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_srli_pi16 (__m64 __m, int __count) { return (__m64) __builtin_ia32_psrlwi ((__v4hi)__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psrlwi (__m64 __m, int __count) { return _mm_srli_pi16 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_srl_pi32 (__m64 __m, __m64 __count) { return (__m64) __builtin_ia32_psrld ((__v2si)__m, (__v2si)__count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psrld (__m64 __m, __m64 __count) { return _mm_srl_pi32 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_srli_pi32 (__m64 __m, int __count) { return (__m64) __builtin_ia32_psrldi ((__v2si)__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psrldi (__m64 __m, int __count) { return _mm_srli_pi32 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_srl_si64 (__m64 __m, __m64 __count) { return (__m64) __builtin_ia32_psrlq ((__v1di)__m, (__v1di)__count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psrlq (__m64 __m, __m64 __count) { return _mm_srl_si64 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_srli_si64 (__m64 __m, int __count) { return (__m64) __builtin_ia32_psrlqi ((__v1di)__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_psrlqi (__m64 __m, int __count) { return _mm_srli_si64 (__m, __count); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_and_si64 (__m64 __m1, __m64 __m2) { return __builtin_ia32_pand (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pand (__m64 __m1, __m64 __m2) { return _mm_and_si64 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_andnot_si64 (__m64 __m1, __m64 __m2) { return __builtin_ia32_pandn (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pandn (__m64 __m1, __m64 __m2) { return _mm_andnot_si64 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_or_si64 (__m64 __m1, __m64 __m2) { return __builtin_ia32_por (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_por (__m64 __m1, __m64 __m2) { return _mm_or_si64 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_xor_si64 (__m64 __m1, __m64 __m2) { return __builtin_ia32_pxor (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pxor (__m64 __m1, __m64 __m2) { return _mm_xor_si64 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cmpeq_pi8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pcmpeqb ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pcmpeqb (__m64 __m1, __m64 __m2) { return _mm_cmpeq_pi8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cmpgt_pi8 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pcmpgtb ((__v8qi)__m1, (__v8qi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pcmpgtb (__m64 __m1, __m64 __m2) { return _mm_cmpgt_pi8 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cmpeq_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pcmpeqw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pcmpeqw (__m64 __m1, __m64 __m2) { return _mm_cmpeq_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cmpgt_pi16 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pcmpgtw ((__v4hi)__m1, (__v4hi)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pcmpgtw (__m64 __m1, __m64 __m2) { return _mm_cmpgt_pi16 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cmpeq_pi32 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pcmpeqd ((__v2si)__m1, (__v2si)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pcmpeqd (__m64 __m1, __m64 __m2) { return _mm_cmpeq_pi32 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_cmpgt_pi32 (__m64 __m1, __m64 __m2) { return (__m64) __builtin_ia32_pcmpgtd ((__v2si)__m1, (__v2si)__m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _m_pcmpgtd (__m64 __m1, __m64 __m2) { return _mm_cmpgt_pi32 (__m1, __m2); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_setzero_si64 (void) { return (__m64)0LL; } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_set_pi32 (int __i1, int __i0) { return (__m64) __builtin_ia32_vec_init_v2si (__i0, __i1); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_set_pi16 (short __w3, short __w2, short __w1, short __w0) { return (__m64) __builtin_ia32_vec_init_v4hi (__w0, __w1, __w2, __w3); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_set_pi8 (char __b7, char __b6, char __b5, char __b4, char __b3, char __b2, char __b1, char __b0) { return (__m64) __builtin_ia32_vec_init_v8qi (__b0, __b1, __b2, __b3, __b4, __b5, __b6, __b7); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_setr_pi32 (int __i0, int __i1) { return _mm_set_pi32 (__i1, __i0); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_setr_pi16 (short __w0, short __w1, short __w2, short __w3) { return _mm_set_pi16 (__w3, __w2, __w1, __w0); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_setr_pi8 (char __b0, char __b1, char __b2, char __b3, char __b4, char __b5, char __b6, char __b7) { return _mm_set_pi8 (__b7, __b6, __b5, __b4, __b3, __b2, __b1, __b0); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_set1_pi32 (int __i) { return _mm_set_pi32 (__i, __i); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_set1_pi16 (short __w) { return _mm_set_pi16 (__w, __w, __w, __w); } extern __inline __m64 __attribute__((__gnu_inline__, __always_inline__, __artificial__)) _mm_set1_pi8 (char __b) { return _mm_set_pi8 (__b, __b, __b, __b, __b, __b, __b, __b); } # 36 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/xmmintrin.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/mm_malloc.h" 1 3 4 # 27 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/mm_malloc.h" 3 4 # 1 "/usr/include/stdlib.h" 1 3 4 # 32 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 276 "/usr/include/stdlib.h" 3 4 extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) atoi (const char *__nptr) { return (int) strtol (__nptr, (char **) ((void *)0), 10); } extern __inline __attribute__ ((__gnu_inline__)) long int __attribute__ ((__nothrow__ , __leaf__)) atol (const char *__nptr) { return strtol (__nptr, (char **) ((void *)0), 10); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) long long int __attribute__ ((__nothrow__ , __leaf__)) atoll (const char *__nptr) { return strtoll (__nptr, (char **) ((void *)0), 10); } # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__warn_unused_result__)); # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 Found header files ['CL/cl.h'] in ['/opt/AMDAPP/include', '/home/lucasogura/petsc/arch-linux2-c-opt/include'] Popping language C ================================================================================ TEST checkSharedLibrary from PETSc.packages.opencl(/home/lucasogura/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.opencl(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.viennacl(/home/lucasogura/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.viennacl(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional viennacl Looking for VIENNACL in directory starting with ViennaCL-1.5.2 Could not locate an existing copy of ViennaCL-1.5.2: ['sowing-1.1.16g', 'mpich-3.1'] Downloading viennacl =============================================================================== Trying to download http://downloads.sourceforge.net/project/viennacl/1.5.x/ViennaCL-1.5.2.tar.gz for VIENNACL =============================================================================== Downloading http://downloads.sourceforge.net/project/viennacl/1.5.x/ViennaCL-1.5.2.tar.gz to /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_ViennaCL-1.5.2.tar.gz Extracting /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_ViennaCL-1.5.2.tar.gz Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages; chmod -R a+r ViennaCL-1.5.2;find ViennaCL-1.5.2 -type d -name "*" -exec chmod a+rx {} \; Looking for VIENNACL in directory starting with ViennaCL-1.5.2 Found a copy of VIENNACL in ViennaCL-1.5.2 Looking for VIENNACL in directory starting with ViennaCL-1.5.2 Found a copy of VIENNACL in ViennaCL-1.5.2 ViennaCLDir = /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/ViennaCL-1.5.2 installDir /home/lucasogura/petsc/arch-linux2-c-opt Not checking for library in Download VIENNACL: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] ['/opt/AMDAPP/lib/x86_64/libOpenCL.so'] Checking for headers Download VIENNACL: ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['viennacl/forwards.h'] in ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/lucasogura/petsc/arch-linux2-c-opt/include', '/opt/AMDAPP/include'] Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -E -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/opt/AMDAPP/include /tmp/petsc-8RbPfA/config.headers/conftest.cc stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.cc" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.cc" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.cc" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.cc" 2 # 1 "/home/lucasogura/petsc/arch-linux2-c-opt/include/viennacl/forwards.h" 1 # 49 "/home/lucasogura/petsc/arch-linux2-c-opt/include/viennacl/forwards.h" # 1 "/usr/include/c++/4.8/cstddef" 1 3 # 39 "/usr/include/c++/4.8/cstddef" 3 # 40 "/usr/include/c++/4.8/cstddef" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 1 3 # 184 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 426 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 1 3 # 39 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/os_defines.h" 2 3 # 427 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 2 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/cpu_defines.h" 1 3 # 430 "/usr/include/x86_64-linux-gnu/c++/4.8/bits/c++config.h" 2 3 # 42 "/usr/include/c++/4.8/cstddef" 2 3 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 42 "/usr/include/c++/4.8/cstddef" 2 3 # 50 "/home/lucasogura/petsc/arch-linux2-c-opt/include/viennacl/forwards.h" 2 # 1 "/usr/include/c++/4.8/cassert" 1 3 # 41 "/usr/include/c++/4.8/cassert" 3 # 42 "/usr/include/c++/4.8/cassert" 3 # 1 "/usr/include/assert.h" 1 3 4 # 66 "/usr/include/assert.h" 3 4 extern "C" { extern void __assert_fail (const char *__assertion, const char *__file, unsigned int __line, const char *__function) throw () __attribute__ ((__noreturn__)); extern void __assert_perror_fail (int __errnum, const char *__file, unsigned int __line, const char *__function) throw () __attribute__ ((__noreturn__)); extern void __assert (const char *__assertion, const char *__file, int __line) throw () __attribute__ ((__noreturn__)); } # 43 "/usr/include/c++/4.8/cassert" 2 3 # 51 "/home/lucasogura/petsc/arch-linux2-c-opt/include/viennacl/forwards.h" 2 # 1 "/usr/include/c++/4.8/string" 1 3 # 36 "/usr/include/c++/4.8/string" 3 # 37 "/usr/include/c++/4.8/string" 3 # 1 "/usr/include/c++/4.8/bits/stringfwd.h" 1 3 # 37 "/usr/include/c++/4.8/bits/stringfwd.h" 3 # 38 "/usr/include/c++/4.8/bits/stringfwd.h" 3 # 1 "/usr/include/c++/4.8/bits/memoryfwd.h" 1 3 # 46 "/usr/include/c++/4.8/bits/memoryfwd.h" 3 # 47 "/usr/include/c++/4.8/bits/memoryfwd.h" 3 namespace std __attribute__ ((__visibility__ ("default"))) { # 63 "/usr/include/c++/4.8/bits/memoryfwd.h" 3 template class allocator; template<> class allocator; template struct uses_allocator; } # 41 "/usr/include/c++/4.8/bits/stringfwd.h" 2 3 namespace std __attribute__ ((__visibility__ ("default"))) { template struct char_traits; template, typename _Alloc = allocator<_CharT> > class basic_string; template<> struct char_traits; typedef basic_string string; template<> struct char_traits; typedef basic_string wstring; # 86 "/usr/include/c++/4.8/bits/stringfwd.h" 3 } # 40 "/usr/include/c++/4.8/string" 2 3 # 1 "/usr/include/c++/4.8/bits/char_traits.h" 1 3 # 37 "/usr/include/c++/4.8/bits/char_traits.h" 3 # 38 "/usr/include/c++/4.8/bits/char_traits.h" 3 # 1 "/usr/include/c++/4.8/bits/stl_algobase.h" 1 3 # 60 "/usr/include/c++/4.8/bits/stl_algobase.h" 3 # 1 "/usr/include/c++/4.8/bits/functexcept.h" 1 3 # 40 "/usr/include/c++/4.8/bits/functexcept.h" 3 # 1 "/usr/include/c++/4.8/bits/exception_defines.h" 1 3 # 41 "/usr/include/c++/4.8/bits/functexcept.h" 2 3 namespace std __attribute__ ((__visibility__ ("default"))) { void __throw_bad_exception(void) __attribute__((__noreturn__)); void __throw_bad_alloc(void) __attribute__((__noreturn__)); void __throw_bad_cast(void) __attribute__((__noreturn__)); void __throw_bad_typeid(void) __attribute__((__noreturn__)); void __throw_logic_error(const char*) __attribute__((__noreturn__)); void __throw_domain_error(const char*) __attribute__((__noreturn__)); void __throw_invalid_argument(const char*) __attribute__((__noreturn__)); void __throw_length_error(const char*) __attribute__((__noreturn__)); void __throw_out_of_range(const char*) __attribute__((__noreturn__)); void __throw_runtime_error(const char*) __attribute__((__noreturn__)); void __throw_range_error(const char*) __attribute__((__noreturn__)); void __throw_overflow_error(const char*) __attribute__((__noreturn__)); void __throw_underflow_error(const char*) __attribute__((__noreturn__)); void __throw_ios_failure(const char*) __attribute__((__noreturn__)); void __throw_system_error(int) __attribute__((__noreturn__)); void __throw_future_error(int) __attribute__((__noreturn__)); void __throw_bad_function_call() __attribute__((__noreturn__)); } # 61 "/usr/include/c++/4.8/bits/stl_algobase.h" 2 3 # 1 "/usr/include/c++/4.8/bits/cpp_type_traits.h" 1 3 # 35 "/usr/include/c++/4.8/bits/cpp_type_traits.h" 3 # 36 "/usr/include/c++/4.8/bits/cpp_type_traits.h" 3 # 68 "/usr/include/c++/4.8/bits/cpp_type_traits.h" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { template class __normal_iterator; } namespace std __attribute__ ((__visibility__ ("default"))) { struct __true_type { }; struct __false_type { }; template struct __truth_type { typedef __false_type __type; }; template<> struct __truth_type { typedef __true_type __type; }; template struct __traitor { enum { __value = bool(_Sp::__value) || bool(_Tp::__value) }; typedef typename __truth_type<__value>::__type __type; }; template struct __are_same { enum { __value = 0 }; typedef __false_type __type; }; template struct __are_same<_Tp, _Tp> { enum { __value = 1 }; typedef __true_type __type; }; template struct __is_void { enum { __value = 0 }; typedef __false_type __type; }; template<> struct __is_void { enum { __value = 1 }; typedef __true_type __type; }; template struct __is_integer { enum { __value = 0 }; typedef __false_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; # 198 "/usr/include/c++/4.8/bits/cpp_type_traits.h" 3 template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_integer { enum { __value = 1 }; typedef __true_type __type; }; template struct __is_floating { enum { __value = 0 }; typedef __false_type __type; }; template<> struct __is_floating { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_floating { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_floating { enum { __value = 1 }; typedef __true_type __type; }; template struct __is_pointer { enum { __value = 0 }; typedef __false_type __type; }; template struct __is_pointer<_Tp*> { enum { __value = 1 }; typedef __true_type __type; }; template struct __is_normal_iterator { enum { __value = 0 }; typedef __false_type __type; }; template struct __is_normal_iterator< __gnu_cxx::__normal_iterator<_Iterator, _Container> > { enum { __value = 1 }; typedef __true_type __type; }; template struct __is_arithmetic : public __traitor<__is_integer<_Tp>, __is_floating<_Tp> > { }; template struct __is_fundamental : public __traitor<__is_void<_Tp>, __is_arithmetic<_Tp> > { }; template struct __is_scalar : public __traitor<__is_arithmetic<_Tp>, __is_pointer<_Tp> > { }; template struct __is_char { enum { __value = 0 }; typedef __false_type __type; }; template<> struct __is_char { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_char { enum { __value = 1 }; typedef __true_type __type; }; template struct __is_byte { enum { __value = 0 }; typedef __false_type __type; }; template<> struct __is_byte { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_byte { enum { __value = 1 }; typedef __true_type __type; }; template<> struct __is_byte { enum { __value = 1 }; typedef __true_type __type; }; template struct __is_move_iterator { enum { __value = 0 }; typedef __false_type __type; }; # 421 "/usr/include/c++/4.8/bits/cpp_type_traits.h" 3 } # 62 "/usr/include/c++/4.8/bits/stl_algobase.h" 2 3 # 1 "/usr/include/c++/4.8/ext/type_traits.h" 1 3 # 32 "/usr/include/c++/4.8/ext/type_traits.h" 3 # 33 "/usr/include/c++/4.8/ext/type_traits.h" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { template struct __enable_if { }; template struct __enable_if { typedef _Tp __type; }; template struct __conditional_type { typedef _Iftrue __type; }; template struct __conditional_type { typedef _Iffalse __type; }; template struct __add_unsigned { private: typedef __enable_if::__value, _Tp> __if_type; public: typedef typename __if_type::__type __type; }; template<> struct __add_unsigned { typedef unsigned char __type; }; template<> struct __add_unsigned { typedef unsigned char __type; }; template<> struct __add_unsigned { typedef unsigned short __type; }; template<> struct __add_unsigned { typedef unsigned int __type; }; template<> struct __add_unsigned { typedef unsigned long __type; }; template<> struct __add_unsigned { typedef unsigned long long __type; }; template<> struct __add_unsigned; template<> struct __add_unsigned; template struct __remove_unsigned { private: typedef __enable_if::__value, _Tp> __if_type; public: typedef typename __if_type::__type __type; }; template<> struct __remove_unsigned { typedef signed char __type; }; template<> struct __remove_unsigned { typedef signed char __type; }; template<> struct __remove_unsigned { typedef short __type; }; template<> struct __remove_unsigned { typedef int __type; }; template<> struct __remove_unsigned { typedef long __type; }; template<> struct __remove_unsigned { typedef long long __type; }; template<> struct __remove_unsigned; template<> struct __remove_unsigned; template inline bool __is_null_pointer(_Type* __ptr) { return __ptr == 0; } template inline bool __is_null_pointer(_Type) { return false; } template::__value> struct __promote { typedef double __type; }; template struct __promote<_Tp, false> { }; template<> struct __promote { typedef long double __type; }; template<> struct __promote { typedef double __type; }; template<> struct __promote { typedef float __type; }; template::__type, typename _Up2 = typename __promote<_Up>::__type> struct __promote_2 { typedef __typeof__(_Tp2() + _Up2()) __type; }; template::__type, typename _Up2 = typename __promote<_Up>::__type, typename _Vp2 = typename __promote<_Vp>::__type> struct __promote_3 { typedef __typeof__(_Tp2() + _Up2() + _Vp2()) __type; }; template::__type, typename _Up2 = typename __promote<_Up>::__type, typename _Vp2 = typename __promote<_Vp>::__type, typename _Wp2 = typename __promote<_Wp>::__type> struct __promote_4 { typedef __typeof__(_Tp2() + _Up2() + _Vp2() + _Wp2()) __type; }; } # 63 "/usr/include/c++/4.8/bits/stl_algobase.h" 2 3 # 1 "/usr/include/c++/4.8/ext/numeric_traits.h" 1 3 # 32 "/usr/include/c++/4.8/ext/numeric_traits.h" 3 # 33 "/usr/include/c++/4.8/ext/numeric_traits.h" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { # 54 "/usr/include/c++/4.8/ext/numeric_traits.h" 3 template struct __numeric_traits_integer { static const _Value __min = (((_Value)(-1) < 0) ? (_Value)1 << (sizeof(_Value) * 8 - ((_Value)(-1) < 0)) : (_Value)0); static const _Value __max = (((_Value)(-1) < 0) ? (((((_Value)1 << ((sizeof(_Value) * 8 - ((_Value)(-1) < 0)) - 1)) - 1) << 1) + 1) : ~(_Value)0); static const bool __is_signed = ((_Value)(-1) < 0); static const int __digits = (sizeof(_Value) * 8 - ((_Value)(-1) < 0)); }; template const _Value __numeric_traits_integer<_Value>::__min; template const _Value __numeric_traits_integer<_Value>::__max; template const bool __numeric_traits_integer<_Value>::__is_signed; template const int __numeric_traits_integer<_Value>::__digits; # 99 "/usr/include/c++/4.8/ext/numeric_traits.h" 3 template struct __numeric_traits_floating { static const int __max_digits10 = (2 + (std::__are_same<_Value, float>::__value ? 24 : std::__are_same<_Value, double>::__value ? 53 : 64) * 643L / 2136); static const bool __is_signed = true; static const int __digits10 = (std::__are_same<_Value, float>::__value ? 6 : std::__are_same<_Value, double>::__value ? 15 : 18); static const int __max_exponent10 = (std::__are_same<_Value, float>::__value ? 38 : std::__are_same<_Value, double>::__value ? 308 : 4932); }; template const int __numeric_traits_floating<_Value>::__max_digits10; template const bool __numeric_traits_floating<_Value>::__is_signed; template const int __numeric_traits_floating<_Value>::__digits10; template const int __numeric_traits_floating<_Value>::__max_exponent10; template struct __numeric_traits : public __conditional_type::__value, __numeric_traits_integer<_Value>, __numeric_traits_floating<_Value> >::__type { }; } # 64 "/usr/include/c++/4.8/bits/stl_algobase.h" 2 3 # 1 "/usr/include/c++/4.8/bits/stl_pair.h" 1 3 # 59 "/usr/include/c++/4.8/bits/stl_pair.h" 3 # 1 "/usr/include/c++/4.8/bits/move.h" 1 3 # 34 "/usr/include/c++/4.8/bits/move.h" 3 # 1 "/usr/include/c++/4.8/bits/concept_check.h" 1 3 # 33 "/usr/include/c++/4.8/bits/concept_check.h" 3 # 34 "/usr/include/c++/4.8/bits/concept_check.h" 3 # 35 "/usr/include/c++/4.8/bits/move.h" 2 3 namespace std __attribute__ ((__visibility__ ("default"))) { template inline _Tp* __addressof(_Tp& __r) { return reinterpret_cast<_Tp*> (&const_cast(reinterpret_cast(__r))); } } # 149 "/usr/include/c++/4.8/bits/move.h" 3 namespace std __attribute__ ((__visibility__ ("default"))) { # 164 "/usr/include/c++/4.8/bits/move.h" 3 template inline void swap(_Tp& __a, _Tp& __b) { _Tp __tmp = (__a); __a = (__b); __b = (__tmp); } template inline void swap(_Tp (&__a)[_Nm], _Tp (&__b)[_Nm]) { for (size_t __n = 0; __n < _Nm; ++__n) swap(__a[__n], __b[__n]); } } # 60 "/usr/include/c++/4.8/bits/stl_pair.h" 2 3 namespace std __attribute__ ((__visibility__ ("default"))) { # 95 "/usr/include/c++/4.8/bits/stl_pair.h" 3 template struct pair { typedef _T1 first_type; typedef _T2 second_type; _T1 first; _T2 second; pair() : first(), second() { } pair(const _T1& __a, const _T2& __b) : first(__a), second(__b) { } template pair(const pair<_U1, _U2>& __p) : first(__p.first), second(__p.second) { } # 209 "/usr/include/c++/4.8/bits/stl_pair.h" 3 }; template inline bool operator==(const pair<_T1, _T2>& __x, const pair<_T1, _T2>& __y) { return __x.first == __y.first && __x.second == __y.second; } template inline bool operator<(const pair<_T1, _T2>& __x, const pair<_T1, _T2>& __y) { return __x.first < __y.first || (!(__y.first < __x.first) && __x.second < __y.second); } template inline bool operator!=(const pair<_T1, _T2>& __x, const pair<_T1, _T2>& __y) { return !(__x == __y); } template inline bool operator>(const pair<_T1, _T2>& __x, const pair<_T1, _T2>& __y) { return __y < __x; } template inline bool operator<=(const pair<_T1, _T2>& __x, const pair<_T1, _T2>& __y) { return !(__y < __x); } template inline bool operator>=(const pair<_T1, _T2>& __x, const pair<_T1, _T2>& __y) { return !(__x < __y); } # 284 "/usr/include/c++/4.8/bits/stl_pair.h" 3 template inline pair<_T1, _T2> make_pair(_T1 __x, _T2 __y) { return pair<_T1, _T2>(__x, __y); } } # 65 "/usr/include/c++/4.8/bits/stl_algobase.h" 2 3 # 1 "/usr/include/c++/4.8/bits/stl_iterator_base_types.h" 1 3 # 62 "/usr/include/c++/4.8/bits/stl_iterator_base_types.h" 3 # 63 "/usr/include/c++/4.8/bits/stl_iterator_base_types.h" 3 namespace std __attribute__ ((__visibility__ ("default"))) { # 89 "/usr/include/c++/4.8/bits/stl_iterator_base_types.h" 3 struct input_iterator_tag { }; struct output_iterator_tag { }; struct forward_iterator_tag : public input_iterator_tag { }; struct bidirectional_iterator_tag : public forward_iterator_tag { }; struct random_access_iterator_tag : public bidirectional_iterator_tag { }; # 116 "/usr/include/c++/4.8/bits/stl_iterator_base_types.h" 3 template struct iterator { typedef _Category iterator_category; typedef _Tp value_type; typedef _Distance difference_type; typedef _Pointer pointer; typedef _Reference reference; }; # 162 "/usr/include/c++/4.8/bits/stl_iterator_base_types.h" 3 template struct iterator_traits { typedef typename _Iterator::iterator_category iterator_category; typedef typename _Iterator::value_type value_type; typedef typename _Iterator::difference_type difference_type; typedef typename _Iterator::pointer pointer; typedef typename _Iterator::reference reference; }; template struct iterator_traits<_Tp*> { typedef random_access_iterator_tag iterator_category; typedef _Tp value_type; typedef ptrdiff_t difference_type; typedef _Tp* pointer; typedef _Tp& reference; }; template struct iterator_traits { typedef random_access_iterator_tag iterator_category; typedef _Tp value_type; typedef ptrdiff_t difference_type; typedef const _Tp* pointer; typedef const _Tp& reference; }; template inline typename iterator_traits<_Iter>::iterator_category __iterator_category(const _Iter&) { return typename iterator_traits<_Iter>::iterator_category(); } template struct _Iter_base { typedef _Iterator iterator_type; static iterator_type _S_base(_Iterator __it) { return __it; } }; template struct _Iter_base<_Iterator, true> { typedef typename _Iterator::iterator_type iterator_type; static iterator_type _S_base(_Iterator __it) { return __it.base(); } }; # 232 "/usr/include/c++/4.8/bits/stl_iterator_base_types.h" 3 } # 66 "/usr/include/c++/4.8/bits/stl_algobase.h" 2 3 # 1 "/usr/include/c++/4.8/bits/stl_iterator_base_funcs.h" 1 3 # 62 "/usr/include/c++/4.8/bits/stl_iterator_base_funcs.h" 3 # 63 "/usr/include/c++/4.8/bits/stl_iterator_base_funcs.h" 3 # 1 "/usr/include/c++/4.8/debug/debug.h" 1 3 # 46 "/usr/include/c++/4.8/debug/debug.h" 3 namespace std { namespace __debug { } } namespace __gnu_debug { using namespace std::__debug; } # 66 "/usr/include/c++/4.8/bits/stl_iterator_base_funcs.h" 2 3 namespace std __attribute__ ((__visibility__ ("default"))) { template inline typename iterator_traits<_InputIterator>::difference_type __distance(_InputIterator __first, _InputIterator __last, input_iterator_tag) { typename iterator_traits<_InputIterator>::difference_type __n = 0; while (__first != __last) { ++__first; ++__n; } return __n; } template inline typename iterator_traits<_RandomAccessIterator>::difference_type __distance(_RandomAccessIterator __first, _RandomAccessIterator __last, random_access_iterator_tag) { return __last - __first; } # 112 "/usr/include/c++/4.8/bits/stl_iterator_base_funcs.h" 3 template inline typename iterator_traits<_InputIterator>::difference_type distance(_InputIterator __first, _InputIterator __last) { return std::__distance(__first, __last, std::__iterator_category(__first)); } template inline void __advance(_InputIterator& __i, _Distance __n, input_iterator_tag) { ; while (__n--) ++__i; } template inline void __advance(_BidirectionalIterator& __i, _Distance __n, bidirectional_iterator_tag) { if (__n > 0) while (__n--) ++__i; else while (__n++) --__i; } template inline void __advance(_RandomAccessIterator& __i, _Distance __n, random_access_iterator_tag) { __i += __n; } # 171 "/usr/include/c++/4.8/bits/stl_iterator_base_funcs.h" 3 template inline void advance(_InputIterator& __i, _Distance __n) { typename iterator_traits<_InputIterator>::difference_type __d = __n; std::__advance(__i, __d, std::__iterator_category(__i)); } # 202 "/usr/include/c++/4.8/bits/stl_iterator_base_funcs.h" 3 } # 67 "/usr/include/c++/4.8/bits/stl_algobase.h" 2 3 # 1 "/usr/include/c++/4.8/bits/stl_iterator.h" 1 3 # 67 "/usr/include/c++/4.8/bits/stl_iterator.h" 3 namespace std __attribute__ ((__visibility__ ("default"))) { # 95 "/usr/include/c++/4.8/bits/stl_iterator.h" 3 template class reverse_iterator : public iterator::iterator_category, typename iterator_traits<_Iterator>::value_type, typename iterator_traits<_Iterator>::difference_type, typename iterator_traits<_Iterator>::pointer, typename iterator_traits<_Iterator>::reference> { protected: _Iterator current; typedef iterator_traits<_Iterator> __traits_type; public: typedef _Iterator iterator_type; typedef typename __traits_type::difference_type difference_type; typedef typename __traits_type::pointer pointer; typedef typename __traits_type::reference reference; reverse_iterator() : current() { } explicit reverse_iterator(iterator_type __x) : current(__x) { } reverse_iterator(const reverse_iterator& __x) : current(__x.current) { } template reverse_iterator(const reverse_iterator<_Iter>& __x) : current(__x.base()) { } iterator_type base() const { return current; } # 159 "/usr/include/c++/4.8/bits/stl_iterator.h" 3 reference operator*() const { _Iterator __tmp = current; return *--__tmp; } pointer operator->() const { return &(operator*()); } reverse_iterator& operator++() { --current; return *this; } reverse_iterator operator++(int) { reverse_iterator __tmp = *this; --current; return __tmp; } reverse_iterator& operator--() { ++current; return *this; } reverse_iterator operator--(int) { reverse_iterator __tmp = *this; ++current; return __tmp; } reverse_iterator operator+(difference_type __n) const { return reverse_iterator(current - __n); } reverse_iterator& operator+=(difference_type __n) { current -= __n; return *this; } reverse_iterator operator-(difference_type __n) const { return reverse_iterator(current + __n); } reverse_iterator& operator-=(difference_type __n) { current += __n; return *this; } reference operator[](difference_type __n) const { return *(*this + __n); } }; # 289 "/usr/include/c++/4.8/bits/stl_iterator.h" 3 template inline bool operator==(const reverse_iterator<_Iterator>& __x, const reverse_iterator<_Iterator>& __y) { return __x.base() == __y.base(); } template inline bool operator<(const reverse_iterator<_Iterator>& __x, const reverse_iterator<_Iterator>& __y) { return __y.base() < __x.base(); } template inline bool operator!=(const reverse_iterator<_Iterator>& __x, const reverse_iterator<_Iterator>& __y) { return !(__x == __y); } template inline bool operator>(const reverse_iterator<_Iterator>& __x, const reverse_iterator<_Iterator>& __y) { return __y < __x; } template inline bool operator<=(const reverse_iterator<_Iterator>& __x, const reverse_iterator<_Iterator>& __y) { return !(__y < __x); } template inline bool operator>=(const reverse_iterator<_Iterator>& __x, const reverse_iterator<_Iterator>& __y) { return !(__x < __y); } template inline typename reverse_iterator<_Iterator>::difference_type operator-(const reverse_iterator<_Iterator>& __x, const reverse_iterator<_Iterator>& __y) { return __y.base() - __x.base(); } template inline reverse_iterator<_Iterator> operator+(typename reverse_iterator<_Iterator>::difference_type __n, const reverse_iterator<_Iterator>& __x) { return reverse_iterator<_Iterator>(__x.base() - __n); } template inline bool operator==(const reverse_iterator<_IteratorL>& __x, const reverse_iterator<_IteratorR>& __y) { return __x.base() == __y.base(); } template inline bool operator<(const reverse_iterator<_IteratorL>& __x, const reverse_iterator<_IteratorR>& __y) { return __y.base() < __x.base(); } template inline bool operator!=(const reverse_iterator<_IteratorL>& __x, const reverse_iterator<_IteratorR>& __y) { return !(__x == __y); } template inline bool operator>(const reverse_iterator<_IteratorL>& __x, const reverse_iterator<_IteratorR>& __y) { return __y < __x; } template inline bool operator<=(const reverse_iterator<_IteratorL>& __x, const reverse_iterator<_IteratorR>& __y) { return !(__y < __x); } template inline bool operator>=(const reverse_iterator<_IteratorL>& __x, const reverse_iterator<_IteratorR>& __y) { return !(__x < __y); } template inline typename reverse_iterator<_IteratorL>::difference_type operator-(const reverse_iterator<_IteratorL>& __x, const reverse_iterator<_IteratorR>& __y) { return __y.base() - __x.base(); } # 401 "/usr/include/c++/4.8/bits/stl_iterator.h" 3 template class back_insert_iterator : public iterator { Found header files ['viennacl/forwards.h'] in ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from PETSc.packages.viennacl(/home/lucasogura/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.viennacl(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.valgrind(/home/lucasogura/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.valgrind(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/valgrind/valgrind.h" 1 3 4 # 95 "/usr/include/valgrind/valgrind.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 98 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stdarg.h" 3 4 typedef __gnuc_va_list va_list; # 96 "/usr/include/valgrind/valgrind.h" 2 3 4 # 382 "/usr/include/valgrind/valgrind.h" 3 4 typedef struct { unsigned long long int nraddr; } OrigFn; # 5462 "/usr/include/valgrind/valgrind.h" 3 4 typedef enum { VG_USERREQ__RUNNING_ON_VALGRIND = 0x1001, VG_USERREQ__DISCARD_TRANSLATIONS = 0x1002, VG_USERREQ__CLIENT_CALL0 = 0x1101, VG_USERREQ__CLIENT_CALL1 = 0x1102, VG_USERREQ__CLIENT_CALL2 = 0x1103, VG_USERREQ__CLIENT_CALL3 = 0x1104, VG_USERREQ__COUNT_ERRORS = 0x1201, VG_USERREQ__GDB_MONITOR_COMMAND = 0x1202, VG_USERREQ__MALLOCLIKE_BLOCK = 0x1301, VG_USERREQ__RESIZEINPLACE_BLOCK = 0x130b, VG_USERREQ__FREELIKE_BLOCK = 0x1302, VG_USERREQ__CREATE_MEMPOOL = 0x1303, VG_USERREQ__DESTROY_MEMPOOL = 0x1304, VG_USERREQ__MEMPOOL_ALLOC = 0x1305, VG_USERREQ__MEMPOOL_FREE = 0x1306, VG_USERREQ__MEMPOOL_TRIM = 0x1307, VG_USERREQ__MOVE_MEMPOOL = 0x1308, VG_USERREQ__MEMPOOL_CHANGE = 0x1309, VG_USERREQ__MEMPOOL_EXISTS = 0x130a, # 5507 "/usr/include/valgrind/valgrind.h" 3 4 VG_USERREQ__PRINTF = 0x1401, VG_USERREQ__PRINTF_BACKTRACE = 0x1402, VG_USERREQ__PRINTF_VALIST_BY_REF = 0x1403, VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF = 0x1404, VG_USERREQ__STACK_REGISTER = 0x1501, VG_USERREQ__STACK_DEREGISTER = 0x1502, VG_USERREQ__STACK_CHANGE = 0x1503, VG_USERREQ__LOAD_PDB_DEBUGINFO = 0x1601, VG_USERREQ__MAP_IP_TO_SRCLOC = 0x1701, VG_USERREQ__CHANGE_ERR_DISABLEMENT = 0x1801, VG_USERREQ__VEX_INIT_FOR_IRI = 0x1901 } Vg_ClientRequest; # 5567 "/usr/include/valgrind/valgrind.h" 3 4 static int VALGRIND_PRINTF(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs,format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }) ; __builtin_va_end(vargs); return (int)_qzz_res; } static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs,format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }) ; __builtin_va_end(vargs); return (int)_qzz_res; } # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Found header files ['valgrind/valgrind.h'] in ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Popping language C All intermediate test results are stored in /tmp/petsc-8RbPfA/PETSc.packages.valgrind Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.packages.valgrind/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.packages.valgrind/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Mathematica(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Mathematica(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opengl(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.opengl(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.glut(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.glut(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default PETSc clone, checking for c2html Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/games/c2html...not found Checking for program /usr/local/games/c2html...not found Checking for program /home/lucasogura/c2html...not found Checking for program /home/lucasogura/petsc/bin/win32fe/c2html...not found Installing c2html Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.c2html(/home/lucasogura/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.c2html(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional c2html Looking for C2HTML in directory starting with c2html Could not locate an existing copy of c2html: ['sowing-1.1.16g', 'ViennaCL-1.5.2', 'mpich-3.1'] Downloading c2html =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/c2html.tar.gz for C2HTML =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/c2html.tar.gz to /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_c2html.tar.gz Extracting /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_c2html.tar.gz Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages; chmod -R a+r c2html-0.9.4;find c2html-0.9.4 -type d -name "*" -exec chmod a+rx {} \; Looking for C2HTML in directory starting with c2html Found a copy of C2HTML in c2html-0.9.4 Looking for C2HTML in directory starting with c2html Found a copy of C2HTML in c2html-0.9.4 Have to rebuild c2html, /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/c2html-0.9.4/c2html.args != /home/lucasogura/petsc/arch-linux2-c-opt/conf/c2html Checking for program /usr/local/sbin/flex...not found Checking for program /usr/local/bin/flex...not found Checking for program /usr/sbin/flex...not found Checking for program /usr/bin/flex...found Defined make macro "FLEX" to "flex" Checking for program /usr/local/sbin/lex...not found Checking for program /usr/local/bin/lex...not found Checking for program /usr/sbin/lex...not found Checking for program /usr/bin/lex...found Defined make macro "LEX" to "lex" Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/c2html-0.9.4 && ./configure --prefix=/home/lucasogura/petsc/arch-linux2-c-opt --with-cc="/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc" stdout: checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for executable suffix... checking for object suffix... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for a BSD compatible install... /usr/bin/install -c checking for flex... flex checking for yywrap in -lfl... yes checking lex output file root... lex.yy checking whether yytext is a pointer... yes checking whether make sets ${MAKE}... yes checking for yylex in -lfl... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for unistd.h... yes checking for getopt.h... yes checking for malloc.h... yes checking for gcc option to accept ANSI C... none needed checking for an ANSI C-conforming const... yes checking for uid_t in sys/types.h... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... (cached) yes checking for mode_t... yes checking for off_t... yes checking for pid_t... yes checking for size_t... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for getpagesize... yes checking for working mmap... yes checking for strftime... yes checking for strstr... yes checking for getopt... yes checking for popen... yes checking for fileno... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/c2html-0.9.4 && make && make install && make clean stdout: flex ./c2html.l gcc -O -I. -I. -DCOMPRESSION=1 -o c2html lex.yy.c ./mymain.c ./colors.c -lfl mkdir -p /home/lucasogura/petsc/arch-linux2-c-opt/man/man1 /home/lucasogura/petsc/arch-linux2-c-opt/doc/c2html /usr/bin/install -c -m 644 ./c2html.1 /home/lucasogura/petsc/arch-linux2-c-opt/man/man1/c2html.1 /usr/bin/install -c -m 644 ./AUTHORS /home/lucasogura/petsc/arch-linux2-c-opt/doc/c2html/AUTHORS /usr/bin/install -c -m 644 ./COPYING /home/lucasogura/petsc/arch-linux2-c-opt/doc/c2html/COPYING /usr/bin/install -c -m 644 ./NEWS /home/lucasogura/petsc/arch-linux2-c-opt/doc/c2html/NEWS /usr/bin/install -c -m 644 ./README /home/lucasogura/petsc/arch-linux2-c-opt/doc/c2html/README /usr/bin/install -c -m 644 ./c2html.lsm /home/lucasogura/petsc/arch-linux2-c-opt/doc/c2html/c2html.lsm Installing c2html to /home/lucasogura/petsc/arch-linux2-c-opt/bin mkdir -p /home/lucasogura/petsc/arch-linux2-c-opt/bin /usr/bin/install -c c2html /home/lucasogura/petsc/arch-linux2-c-opt/bin/c2html rm -rf *.o *~ lex.yy.c TAGS Executing: cp -f /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/c2html-0.9.4/c2html.args /home/lucasogura/petsc/arch-linux2-c-opt/conf/c2html Defined make macro "C2HTML" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/c2html" Not checking for library in Download C2HTML: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download C2HTML: ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.c2html(/home/lucasogura/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.c2html(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opengles(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.opengles(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.cuda(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.cuda(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Numpy(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Numpy(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.saws(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.saws(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.yaml(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.yaml(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FFC(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.FFC(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpe(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.mpe(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.pthread(/home/lucasogura/petsc/config/PETSc/packages/pthread.py:26) TESTING: configureLibrary from PETSc.packages.pthread(config/PETSc/packages/pthread.py:26) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Package specific search directory PTHREAD: ['libpthread.a'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library ['libpthread.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lpthread -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_LIBPTHREAD" to "1" Popping language C Checking for headers Package specific search directory PTHREAD: ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/lucasogura/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers -I/home/lucasogura/petsc/arch-linux2-c-opt/include /tmp/petsc-8RbPfA/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conftest.c" # 1 "/tmp/petsc-8RbPfA/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 21 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 23 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 28 "/usr/include/sched.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 33 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 72 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 95 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 118 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 201 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 42 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 124 "/usr/include/sched.h" 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 28 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 125 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 166 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 201 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 239 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 282 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 440 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 505 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 517 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 551 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 691 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 703 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 744 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 817 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 899 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 1011 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1055 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1122 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1156 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) pthread_equal (pthread_t __thread1, pthread_t __thread2) { return __thread1 == __thread2; } # 3 "/tmp/petsc-8RbPfA/config.headers/conftest.c" 2 Found header files ['pthread.h'] in ['/home/lucasogura/petsc/arch-linux2-c-opt/include'] Popping language C All intermediate test results are stored in /tmp/petsc-8RbPfA/PETSc.packages.pthread Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c:6:12: warning: unused variable ‘a’ [-Wunused-variable] cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.headers /tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c stdout: # 1 "/tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c" # 1 "/tmp/petsc-8RbPfA/PETSc.packages.pthread/confdefs.h" 1 # 2 "/tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c" 2 # 1 "/tmp/petsc-8RbPfA/PETSc.packages.pthread/conffix.h" 1 # 3 "/tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 374 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 375 "/usr/include/features.h" 2 3 4 # 398 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 399 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.8/include/stddef.h" 3 4 typedef long unsigned int size_t; # 24 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 # 43 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 3 4 # 1 "/usr/include/linux/sysctl.h" 1 3 4 # 25 "/usr/include/linux/sysctl.h" 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 26 "/usr/include/linux/sysctl.h" 2 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 27 "/usr/include/linux/sysctl.h" 2 3 4 struct completion; struct __sysctl_args { int *name; int nlen; void *oldval; size_t *oldlenp; void *newval; size_t newlen; unsigned long __unused[4]; }; enum { CTL_KERN=1, CTL_VM=2, CTL_NET=3, CTL_PROC=4, CTL_FS=5, CTL_DEBUG=6, CTL_DEV=7, CTL_BUS=8, CTL_ABI=9, CTL_CPU=10, CTL_ARLAN=254, CTL_S390DBF=5677, CTL_SUNRPC=7249, CTL_PM=9899, CTL_FRV=9898, }; enum { CTL_BUS_ISA=1 }; enum { INOTIFY_MAX_USER_INSTANCES=1, INOTIFY_MAX_USER_WATCHES=2, INOTIFY_MAX_QUEUED_EVENTS=3 }; enum { KERN_OSTYPE=1, KERN_OSRELEASE=2, KERN_OSREV=3, KERN_VERSION=4, KERN_SECUREMASK=5, KERN_PROF=6, KERN_NODENAME=7, KERN_DOMAINNAME=8, KERN_PANIC=15, KERN_REALROOTDEV=16, KERN_SPARC_REBOOT=21, KERN_CTLALTDEL=22, KERN_PRINTK=23, KERN_NAMETRANS=24, KERN_PPC_HTABRECLAIM=25, KERN_PPC_ZEROPAGED=26, KERN_PPC_POWERSAVE_NAP=27, KERN_MODPROBE=28, KERN_SG_BIG_BUFF=29, KERN_ACCT=30, KERN_PPC_L2CR=31, KERN_RTSIGNR=32, KERN_RTSIGMAX=33, KERN_SHMMAX=34, KERN_MSGMAX=35, KERN_MSGMNB=36, KERN_MSGPOOL=37, KERN_SYSRQ=38, KERN_MAX_THREADS=39, KERN_RANDOM=40, KERN_SHMALL=41, KERN_MSGMNI=42, KERN_SEM=43, KERN_SPARC_STOP_A=44, KERN_SHMMNI=45, KERN_OVERFLOWUID=46, KERN_OVERFLOWGID=47, KERN_SHMPATH=48, KERN_HOTPLUG=49, KERN_IEEE_EMULATION_WARNINGS=50, KERN_S390_USER_DEBUG_LOGGING=51, KERN_CORE_USES_PID=52, KERN_TAINTED=53, KERN_CADPID=54, KERN_PIDMAX=55, KERN_CORE_PATTERN=56, KERN_PANIC_ON_OOPS=57, KERN_HPPA_PWRSW=58, KERN_HPPA_UNALIGNED=59, KERN_PRINTK_RATELIMIT=60, KERN_PRINTK_RATELIMIT_BURST=61, KERN_PTY=62, KERN_NGROUPS_MAX=63, KERN_SPARC_SCONS_PWROFF=64, KERN_HZ_TIMER=65, KERN_UNKNOWN_NMI_PANIC=66, KERN_BOOTLOADER_TYPE=67, KERN_RANDOMIZE=68, KERN_SETUID_DUMPABLE=69, KERN_SPIN_RETRY=70, KERN_ACPI_VIDEO_FLAGS=71, KERN_IA64_UNALIGNED=72, KERN_COMPAT_LOG=73, KERN_MAX_LOCK_DEPTH=74, KERN_NMI_WATCHDOG=75, KERN_PANIC_ON_NMI=76, }; enum { VM_UNUSED1=1, VM_UNUSED2=2, VM_UNUSED3=3, VM_UNUSED4=4, VM_OVERCOMMIT_MEMORY=5, VM_UNUSED5=6, VM_UNUSED7=7, VM_UNUSED8=8, VM_UNUSED9=9, VM_PAGE_CLUSTER=10, VM_DIRTY_BACKGROUND=11, VM_DIRTY_RATIO=12, VM_DIRTY_WB_CS=13, VM_DIRTY_EXPIRE_CS=14, VM_NR_PDFLUSH_THREADS=15, VM_OVERCOMMIT_RATIO=16, VM_PAGEBUF=17, VM_HUGETLB_PAGES=18, VM_SWAPPINESS=19, VM_LOWMEM_RESERVE_RATIO=20, VM_MIN_FREE_KBYTES=21, VM_MAX_MAP_COUNT=22, VM_LAPTOP_MODE=23, VM_BLOCK_DUMP=24, VM_HUGETLB_GROUP=25, VM_VFS_CACHE_PRESSURE=26, VM_LEGACY_VA_LAYOUT=27, VM_SWAP_TOKEN_TIMEOUT=28, VM_DROP_PAGECACHE=29, VM_PERCPU_PAGELIST_FRACTION=30, VM_ZONE_RECLAIM_MODE=31, VM_MIN_UNMAPPED=32, VM_PANIC_ON_OOM=33, VM_VDSO_ENABLED=34, VM_MIN_SLAB=35, }; enum { NET_CORE=1, NET_ETHER=2, NET_802=3, NET_UNIX=4, NET_IPV4=5, NET_IPX=6, NET_ATALK=7, NET_NETROM=8, NET_AX25=9, NET_BRIDGE=10, NET_ROSE=11, NET_IPV6=12, NET_X25=13, NET_TR=14, NET_DECNET=15, NET_ECONET=16, NET_SCTP=17, NET_LLC=18, NET_NETFILTER=19, NET_DCCP=20, NET_IRDA=412, }; enum { RANDOM_POOLSIZE=1, RANDOM_ENTROPY_COUNT=2, RANDOM_READ_THRESH=3, RANDOM_WRITE_THRESH=4, RANDOM_BOOT_ID=5, RANDOM_UUID=6 }; enum { PTY_MAX=1, PTY_NR=2 }; enum { BUS_ISA_MEM_BASE=1, BUS_ISA_PORT_BASE=2, BUS_ISA_PORT_SHIFT=3 }; enum { NET_CORE_WMEM_MAX=1, NET_CORE_RMEM_MAX=2, NET_CORE_WMEM_DEFAULT=3, NET_CORE_RMEM_DEFAULT=4, NET_CORE_MAX_BACKLOG=6, NET_CORE_FASTROUTE=7, NET_CORE_MSG_COST=8, NET_CORE_MSG_BURST=9, NET_CORE_OPTMEM_MAX=10, NET_CORE_HOT_LIST_LENGTH=11, NET_CORE_DIVERT_VERSION=12, NET_CORE_NO_CONG_THRESH=13, NET_CORE_NO_CONG=14, NET_CORE_LO_CONG=15, NET_CORE_MOD_CONG=16, NET_CORE_DEV_WEIGHT=17, NET_CORE_SOMAXCONN=18, NET_CORE_BUDGET=19, NET_CORE_AEVENT_ETIME=20, NET_CORE_AEVENT_RSEQTH=21, NET_CORE_WARNINGS=22, }; enum { NET_UNIX_DESTROY_DELAY=1, NET_UNIX_DELETE_DELAY=2, NET_UNIX_MAX_DGRAM_QLEN=3, }; enum { NET_NF_CONNTRACK_MAX=1, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_NF_CONNTRACK_UDP_TIMEOUT=10, NET_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_NF_CONNTRACK_BUCKETS=14, NET_NF_CONNTRACK_LOG_INVALID=15, NET_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_NF_CONNTRACK_TCP_LOOSE=17, NET_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_NF_CONNTRACK_COUNT=27, NET_NF_CONNTRACK_ICMPV6_TIMEOUT=28, NET_NF_CONNTRACK_FRAG6_TIMEOUT=29, NET_NF_CONNTRACK_FRAG6_LOW_THRESH=30, NET_NF_CONNTRACK_FRAG6_HIGH_THRESH=31, NET_NF_CONNTRACK_CHECKSUM=32, }; enum { NET_IPV4_FORWARD=8, NET_IPV4_DYNADDR=9, NET_IPV4_CONF=16, NET_IPV4_NEIGH=17, NET_IPV4_ROUTE=18, NET_IPV4_FIB_HASH=19, NET_IPV4_NETFILTER=20, NET_IPV4_TCP_TIMESTAMPS=33, NET_IPV4_TCP_WINDOW_SCALING=34, NET_IPV4_TCP_SACK=35, NET_IPV4_TCP_RETRANS_COLLAPSE=36, NET_IPV4_DEFAULT_TTL=37, NET_IPV4_AUTOCONFIG=38, NET_IPV4_NO_PMTU_DISC=39, NET_IPV4_TCP_SYN_RETRIES=40, NET_IPV4_IPFRAG_HIGH_THRESH=41, NET_IPV4_IPFRAG_LOW_THRESH=42, NET_IPV4_IPFRAG_TIME=43, NET_IPV4_TCP_MAX_KA_PROBES=44, NET_IPV4_TCP_KEEPALIVE_TIME=45, NET_IPV4_TCP_KEEPALIVE_PROBES=46, NET_IPV4_TCP_RETRIES1=47, NET_IPV4_TCP_RETRIES2=48, NET_IPV4_TCP_FIN_TIMEOUT=49, NET_IPV4_IP_MASQ_DEBUG=50, NET_TCP_SYNCOOKIES=51, NET_TCP_STDURG=52, NET_TCP_RFC1337=53, NET_TCP_SYN_TAILDROP=54, NET_TCP_MAX_SYN_BACKLOG=55, NET_IPV4_LOCAL_PORT_RANGE=56, NET_IPV4_ICMP_ECHO_IGNORE_ALL=57, NET_IPV4_ICMP_ECHO_IGNORE_BROADCASTS=58, NET_IPV4_ICMP_SOURCEQUENCH_RATE=59, NET_IPV4_ICMP_DESTUNREACH_RATE=60, NET_IPV4_ICMP_TIMEEXCEED_RATE=61, NET_IPV4_ICMP_PARAMPROB_RATE=62, NET_IPV4_ICMP_ECHOREPLY_RATE=63, NET_IPV4_ICMP_IGNORE_BOGUS_ERROR_RESPONSES=64, NET_IPV4_IGMP_MAX_MEMBERSHIPS=65, NET_TCP_TW_RECYCLE=66, NET_IPV4_ALWAYS_DEFRAG=67, NET_IPV4_TCP_KEEPALIVE_INTVL=68, NET_IPV4_INET_PEER_THRESHOLD=69, NET_IPV4_INET_PEER_MINTTL=70, NET_IPV4_INET_PEER_MAXTTL=71, NET_IPV4_INET_PEER_GC_MINTIME=72, NET_IPV4_INET_PEER_GC_MAXTIME=73, NET_TCP_ORPHAN_RETRIES=74, NET_TCP_ABORT_ON_OVERFLOW=75, NET_TCP_SYNACK_RETRIES=76, NET_TCP_MAX_ORPHANS=77, NET_TCP_MAX_TW_BUCKETS=78, NET_TCP_FACK=79, NET_TCP_REORDERING=80, NET_TCP_ECN=81, NET_TCP_DSACK=82, NET_TCP_MEM=83, NET_TCP_WMEM=84, NET_TCP_RMEM=85, NET_TCP_APP_WIN=86, NET_TCP_ADV_WIN_SCALE=87, NET_IPV4_NONLOCAL_BIND=88, NET_IPV4_ICMP_RATELIMIT=89, NET_IPV4_ICMP_RATEMASK=90, NET_TCP_TW_REUSE=91, NET_TCP_FRTO=92, NET_TCP_LOW_LATENCY=93, NET_IPV4_IPFRAG_SECRET_INTERVAL=94, NET_IPV4_IGMP_MAX_MSF=96, NET_TCP_NO_METRICS_SAVE=97, NET_TCP_DEFAULT_WIN_SCALE=105, NET_TCP_MODERATE_RCVBUF=106, NET_TCP_TSO_WIN_DIVISOR=107, NET_TCP_BIC_BETA=108, NET_IPV4_ICMP_ERRORS_USE_INBOUND_IFADDR=109, NET_TCP_CONG_CONTROL=110, NET_TCP_ABC=111, NET_IPV4_IPFRAG_MAX_DIST=112, NET_TCP_MTU_PROBING=113, NET_TCP_BASE_MSS=114, NET_IPV4_TCP_WORKAROUND_SIGNED_WINDOWS=115, NET_TCP_DMA_COPYBREAK=116, NET_TCP_SLOW_START_AFTER_IDLE=117, NET_CIPSOV4_CACHE_ENABLE=118, NET_CIPSOV4_CACHE_BUCKET_SIZE=119, NET_CIPSOV4_RBM_OPTFMT=120, NET_CIPSOV4_RBM_STRICTVALID=121, NET_TCP_AVAIL_CONG_CONTROL=122, NET_TCP_ALLOWED_CONG_CONTROL=123, NET_TCP_MAX_SSTHRESH=124, NET_TCP_FRTO_RESPONSE=125, }; enum { NET_IPV4_ROUTE_FLUSH=1, NET_IPV4_ROUTE_MIN_DELAY=2, NET_IPV4_ROUTE_MAX_DELAY=3, NET_IPV4_ROUTE_GC_THRESH=4, NET_IPV4_ROUTE_MAX_SIZE=5, NET_IPV4_ROUTE_GC_MIN_INTERVAL=6, NET_IPV4_ROUTE_GC_TIMEOUT=7, NET_IPV4_ROUTE_GC_INTERVAL=8, NET_IPV4_ROUTE_REDIRECT_LOAD=9, NET_IPV4_ROUTE_REDIRECT_NUMBER=10, NET_IPV4_ROUTE_REDIRECT_SILENCE=11, NET_IPV4_ROUTE_ERROR_COST=12, NET_IPV4_ROUTE_ERROR_BURST=13, NET_IPV4_ROUTE_GC_ELASTICITY=14, NET_IPV4_ROUTE_MTU_EXPIRES=15, NET_IPV4_ROUTE_MIN_PMTU=16, NET_IPV4_ROUTE_MIN_ADVMSS=17, NET_IPV4_ROUTE_SECRET_INTERVAL=18, NET_IPV4_ROUTE_GC_MIN_INTERVAL_MS=19, }; enum { NET_PROTO_CONF_ALL=-2, NET_PROTO_CONF_DEFAULT=-3 }; enum { NET_IPV4_CONF_FORWARDING=1, NET_IPV4_CONF_MC_FORWARDING=2, NET_IPV4_CONF_PROXY_ARP=3, NET_IPV4_CONF_ACCEPT_REDIRECTS=4, NET_IPV4_CONF_SECURE_REDIRECTS=5, NET_IPV4_CONF_SEND_REDIRECTS=6, NET_IPV4_CONF_SHARED_MEDIA=7, NET_IPV4_CONF_RP_FILTER=8, NET_IPV4_CONF_ACCEPT_SOURCE_ROUTE=9, NET_IPV4_CONF_BOOTP_RELAY=10, NET_IPV4_CONF_LOG_MARTIANS=11, NET_IPV4_CONF_TAG=12, NET_IPV4_CONF_ARPFILTER=13, NET_IPV4_CONF_MEDIUM_ID=14, NET_IPV4_CONF_NOXFRM=15, NET_IPV4_CONF_NOPOLICY=16, NET_IPV4_CONF_FORCE_IGMP_VERSION=17, NET_IPV4_CONF_ARP_ANNOUNCE=18, NET_IPV4_CONF_ARP_IGNORE=19, NET_IPV4_CONF_PROMOTE_SECONDARIES=20, NET_IPV4_CONF_ARP_ACCEPT=21, NET_IPV4_CONF_ARP_NOTIFY=22, }; enum { NET_IPV4_NF_CONNTRACK_MAX=1, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT=10, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_IPV4_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_IPV4_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_IPV4_NF_CONNTRACK_BUCKETS=14, NET_IPV4_NF_CONNTRACK_LOG_INVALID=15, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_IPV4_NF_CONNTRACK_TCP_LOOSE=17, NET_IPV4_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_IPV4_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_IPV4_NF_CONNTRACK_COUNT=27, NET_IPV4_NF_CONNTRACK_CHECKSUM=28, }; enum { NET_IPV6_CONF=16, NET_IPV6_NEIGH=17, NET_IPV6_ROUTE=18, NET_IPV6_ICMP=19, NET_IPV6_BINDV6ONLY=20, NET_IPV6_IP6FRAG_HIGH_THRESH=21, NET_IPV6_IP6FRAG_LOW_THRESH=22, NET_IPV6_IP6FRAG_TIME=23, NET_IPV6_IP6FRAG_SECRET_INTERVAL=24, NET_IPV6_MLD_MAX_MSF=25, }; enum { NET_IPV6_ROUTE_FLUSH=1, NET_IPV6_ROUTE_GC_THRESH=2, NET_IPV6_ROUTE_MAX_SIZE=3, NET_IPV6_ROUTE_GC_MIN_INTERVAL=4, NET_IPV6_ROUTE_GC_TIMEOUT=5, NET_IPV6_ROUTE_GC_INTERVAL=6, NET_IPV6_ROUTE_GC_ELASTICITY=7, NET_IPV6_ROUTE_MTU_EXPIRES=8, NET_IPV6_ROUTE_MIN_ADVMSS=9, NET_IPV6_ROUTE_GC_MIN_INTERVAL_MS=10 }; enum { NET_IPV6_FORWARDING=1, NET_IPV6_HOP_LIMIT=2, NET_IPV6_MTU=3, NET_IPV6_ACCEPT_RA=4, NET_IPV6_ACCEPT_REDIRECTS=5, NET_IPV6_AUTOCONF=6, NET_IPV6_DAD_TRANSMITS=7, NET_IPV6_RTR_SOLICITS=8, NET_IPV6_RTR_SOLICIT_INTERVAL=9, NET_IPV6_RTR_SOLICIT_DELAY=10, NET_IPV6_USE_TEMPADDR=11, NET_IPV6_TEMP_VALID_LFT=12, NET_IPV6_TEMP_PREFERED_LFT=13, NET_IPV6_REGEN_MAX_RETRY=14, NET_IPV6_MAX_DESYNC_FACTOR=15, NET_IPV6_MAX_ADDRESSES=16, NET_IPV6_FORCE_MLD_VERSION=17, NET_IPV6_ACCEPT_RA_DEFRTR=18, NET_IPV6_ACCEPT_RA_PINFO=19, NET_IPV6_ACCEPT_RA_RTR_PREF=20, NET_IPV6_RTR_PROBE_INTERVAL=21, NET_IPV6_ACCEPT_RA_RT_INFO_MAX_PLEN=22, NET_IPV6_PROXY_NDP=23, NET_IPV6_ACCEPT_SOURCE_ROUTE=25, __NET_IPV6_MAX }; enum { NET_IPV6_ICMP_RATELIMIT=1 }; enum { NET_NEIGH_MCAST_SOLICIT=1, NET_NEIGH_UCAST_SOLICIT=2, NET_NEIGH_APP_SOLICIT=3, NET_NEIGH_RETRANS_TIME=4, NET_NEIGH_REACHABLE_TIME=5, NET_NEIGH_DELAY_PROBE_TIME=6, NET_NEIGH_GC_STALE_TIME=7, NET_NEIGH_UNRES_QLEN=8, NET_NEIGH_PROXY_QLEN=9, NET_NEIGH_ANYCAST_DELAY=10, NET_NEIGH_PROXY_DELAY=11, NET_NEIGH_LOCKTIME=12, NET_NEIGH_GC_INTERVAL=13, NET_NEIGH_GC_THRESH1=14, NET_NEIGH_GC_THRESH2=15, NET_NEIGH_GC_THRESH3=16, NET_NEIGH_RETRANS_TIME_MS=17, NET_NEIGH_REACHABLE_TIME_MS=18, }; enum { NET_DCCP_DEFAULT=1, }; enum { NET_IPX_PPROP_BROADCASTING=1, NET_IPX_FORWARDING=2 }; enum { NET_LLC2=1, NET_LLC_STATION=2, }; enum { NET_LLC2_TIMEOUT=1, }; enum { NET_LLC_STATION_ACK_TIMEOUT=1, }; enum { NET_LLC2_ACK_TIMEOUT=1, NET_LLC2_P_TIMEOUT=2, NET_LLC2_REJ_TIMEOUT=3, NET_LLC2_BUSY_TIMEOUT=4, }; enum { NET_ATALK_AARP_EXPIRY_TIME=1, NET_ATALK_AARP_TICK_TIME=2, NET_ATALK_AARP_RETRANSMIT_LIMIT=3, NET_ATALK_AARP_RESOLVE_TIME=4 }; enum { NET_NETROM_DEFAULT_PATH_QUALITY=1, NET_NETROM_OBSOLESCENCE_COUNT_INITIALISER=2, NET_NETROM_NETWORK_TTL_INITIALISER=3, NET_NETROM_TRANSPORT_TIMEOUT=4, NET_NETROM_TRANSPORT_MAXIMUM_TRIES=5, NET_NETROM_TRANSPORT_ACKNOWLEDGE_DELAY=6, NET_NETROM_TRANSPORT_BUSY_DELAY=7, NET_NETROM_TRANSPORT_REQUESTED_WINDOW_SIZE=8, NET_NETROM_TRANSPORT_NO_ACTIVITY_TIMEOUT=9, NET_NETROM_ROUTING_CONTROL=10, NET_NETROM_LINK_FAILS_COUNT=11, NET_NETROM_RESET=12 }; enum { NET_AX25_IP_DEFAULT_MODE=1, NET_AX25_DEFAULT_MODE=2, NET_AX25_BACKOFF_TYPE=3, NET_AX25_CONNECT_MODE=4, NET_AX25_STANDARD_WINDOW=5, NET_AX25_EXTENDED_WINDOW=6, NET_AX25_T1_TIMEOUT=7, NET_AX25_T2_TIMEOUT=8, NET_AX25_T3_TIMEOUT=9, NET_AX25_IDLE_TIMEOUT=10, NET_AX25_N2=11, NET_AX25_PACLEN=12, NET_AX25_PROTOCOL=13, NET_AX25_DAMA_SLAVE_TIMEOUT=14 }; enum { NET_ROSE_RESTART_REQUEST_TIMEOUT=1, NET_ROSE_CALL_REQUEST_TIMEOUT=2, NET_ROSE_RESET_REQUEST_TIMEOUT=3, NET_ROSE_CLEAR_REQUEST_TIMEOUT=4, NET_ROSE_ACK_HOLD_BACK_TIMEOUT=5, NET_ROSE_ROUTING_CONTROL=6, NET_ROSE_LINK_FAIL_TIMEOUT=7, NET_ROSE_MAX_VCS=8, NET_ROSE_WINDOW_SIZE=9, NET_ROSE_NO_ACTIVITY_TIMEOUT=10 }; enum { NET_X25_RESTART_REQUEST_TIMEOUT=1, NET_X25_CALL_REQUEST_TIMEOUT=2, NET_X25_RESET_REQUEST_TIMEOUT=3, NET_X25_CLEAR_REQUEST_TIMEOUT=4, NET_X25_ACK_HOLD_BACK_TIMEOUT=5, NET_X25_FORWARD=6 }; enum { NET_TR_RIF_TIMEOUT=1 }; enum { NET_DECNET_NODE_TYPE = 1, NET_DECNET_NODE_ADDRESS = 2, NET_DECNET_NODE_NAME = 3, NET_DECNET_DEFAULT_DEVICE = 4, NET_DECNET_TIME_WAIT = 5, NET_DECNET_DN_COUNT = 6, NET_DECNET_DI_COUNT = 7, NET_DECNET_DR_COUNT = 8, NET_DECNET_DST_GC_INTERVAL = 9, NET_DECNET_CONF = 10, NET_DECNET_NO_FC_MAX_CWND = 11, NET_DECNET_MEM = 12, NET_DECNET_RMEM = 13, NET_DECNET_WMEM = 14, NET_DECNET_DEBUG_LEVEL = 255 }; enum { NET_DECNET_CONF_LOOPBACK = -2, NET_DECNET_CONF_DDCMP = -3, NET_DECNET_CONF_PPP = -4, NET_DECNET_CONF_X25 = -5, NET_DECNET_CONF_GRE = -6, NET_DECNET_CONF_ETHER = -7 }; enum { NET_DECNET_CONF_DEV_PRIORITY = 1, NET_DECNET_CONF_DEV_T1 = 2, NET_DECNET_CONF_DEV_T2 = 3, NET_DECNET_CONF_DEV_T3 = 4, NET_DECNET_CONF_DEV_FORWARDING = 5, NET_DECNET_CONF_DEV_BLKSIZE = 6, NET_DECNET_CONF_DEV_STATE = 7 }; enum { NET_SCTP_RTO_INITIAL = 1, NET_SCTP_RTO_MIN = 2, NET_SCTP_RTO_MAX = 3, NET_SCTP_RTO_ALPHA = 4, NET_SCTP_RTO_BETA = 5, NET_SCTP_VALID_COOKIE_LIFE = 6, NET_SCTP_ASSOCIATION_MAX_RETRANS = 7, NET_SCTP_PATH_MAX_RETRANS = 8, NET_SCTP_MAX_INIT_RETRANSMITS = 9, NET_SCTP_HB_INTERVAL = 10, NET_SCTP_PRESERVE_ENABLE = 11, NET_SCTP_MAX_BURST = 12, NET_SCTP_ADDIP_ENABLE = 13, NET_SCTP_PRSCTP_ENABLE = 14, NET_SCTP_SNDBUF_POLICY = 15, NET_SCTP_SACK_TIMEOUT = 16, NET_SCTP_RCVBUF_POLICY = 17, }; enum { NET_BRIDGE_NF_CALL_ARPTABLES = 1, NET_BRIDGE_NF_CALL_IPTABLES = 2, NET_BRIDGE_NF_CALL_IP6TABLES = 3, NET_BRIDGE_NF_FILTER_VLAN_TAGGED = 4, NET_BRIDGE_NF_FILTER_PPPOE_TAGGED = 5, }; enum { NET_IRDA_DISCOVERY=1, NET_IRDA_DEVNAME=2, NET_IRDA_DEBUG=3, NET_IRDA_FAST_POLL=4, NET_IRDA_DISCOVERY_SLOTS=5, NET_IRDA_DISCOVERY_TIMEOUT=6, NET_IRDA_SLOT_TIMEOUT=7, NET_IRDA_MAX_BAUD_RATE=8, NET_IRDA_MIN_TX_TURN_TIME=9, NET_IRDA_MAX_TX_DATA_SIZE=10, NET_IRDA_MAX_TX_WINDOW=11, NET_IRDA_MAX_NOREPLY_TIME=12, NET_IRDA_WARN_NOREPLY_TIME=13, NET_IRDA_LAP_KEEPALIVE_TIME=14, }; enum { FS_NRINODE=1, FS_STATINODE=2, FS_MAXINODE=3, FS_NRDQUOT=4, FS_MAXDQUOT=5, FS_NRFILE=6, FS_MAXFILE=7, FS_DENTRY=8, FS_NRSUPER=9, FS_MAXSUPER=10, FS_OVERFLOWUID=11, FS_OVERFLOWGID=12, FS_LEASES=13, FS_DIR_NOTIFY=14, FS_LEASE_TIME=15, FS_DQSTATS=16, FS_XFS=17, FS_AIO_NR=18, FS_AIO_MAX_NR=19, FS_INOTIFY=20, FS_OCFS2=988, }; enum { FS_DQ_LOOKUPS = 1, FS_DQ_DROPS = 2, FS_DQ_READS = 3, FS_DQ_WRITES = 4, FS_DQ_CACHE_HITS = 5, FS_DQ_ALLOCATED = 6, FS_DQ_FREE = 7, FS_DQ_SYNCS = 8, FS_DQ_WARNINGS = 9, }; enum { DEV_CDROM=1, DEV_HWMON=2, DEV_PARPORT=3, DEV_RAID=4, DEV_MAC_HID=5, DEV_SCSI=6, DEV_IPMI=7, }; enum { DEV_CDROM_INFO=1, DEV_CDROM_AUTOCLOSE=2, DEV_CDROM_AUTOEJECT=3, DEV_CDROM_DEBUG=4, DEV_CDROM_LOCK=5, DEV_CDROM_CHECK_MEDIA=6 }; enum { DEV_PARPORT_DEFAULT=-3 }; enum { DEV_RAID_SPEED_LIMIT_MIN=1, DEV_RAID_SPEED_LIMIT_MAX=2 }; enum { DEV_PARPORT_DEFAULT_TIMESLICE=1, DEV_PARPORT_DEFAULT_SPINTIME=2 }; enum { DEV_PARPORT_SPINTIME=1, DEV_PARPORT_BASE_ADDR=2, DEV_PARPORT_IRQ=3, DEV_PARPORT_DMA=4, DEV_PARPORT_MODES=5, DEV_PARPORT_DEVICES=6, DEV_PARPORT_AUTOPROBE=16 }; enum { DEV_PARPORT_DEVICES_ACTIVE=-3, }; enum { DEV_PARPORT_DEVICE_TIMESLICE=1, }; enum { DEV_MAC_HID_KEYBOARD_SENDS_LINUX_KEYCODES=1, DEV_MAC_HID_KEYBOARD_LOCK_KEYCODES=2, DEV_MAC_HID_MOUSE_BUTTON_EMULATION=3, DEV_MAC_HID_MOUSE_BUTTON2_KEYCODE=4, DEV_MAC_HID_MOUSE_BUTTON3_KEYCODE=5, DEV_MAC_HID_ADB_MOUSE_SENDS_KEYCODES=6 }; enum { DEV_SCSI_LOGGING_LEVEL=1, }; enum { DEV_IPMI_POWEROFF_POWERCYCLE=1, }; enum { ABI_DEFHANDLER_COFF=1, ABI_DEFHANDLER_ELF=2, ABI_DEFHANDLER_LCALL7=3, ABI_DEFHANDLER_LIBCSO=4, ABI_TRACE=5, ABI_FAKE_UTSNAME=6, }; # 44 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 # 63 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sysctl.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 extern int sysctl (int *__name, int __nlen, void *__oldval, size_t *__oldlenp, void *__newval, size_t __newlen) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-8RbPfA/PETSc.packages.pthread/conftest.c" 2 Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from PETSc.packages.pthread(/home/lucasogura/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.pthread(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pthreadclasses(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.pthreadclasses(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.openmp(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.openmp(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ctetgen(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.ctetgen(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.P3Dlib(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.P3Dlib(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.expat(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.expat(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Suggar(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Suggar(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PTScotch(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.PTScotch(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.X(/home/lucasogura/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Package specific search directory X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lX11 -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory X: ['lib64/libX11.a'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['lib64/libX11.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -lX11 -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status Popping language C Directory does not exist: /opt/X11 (while checking "Package specific search directory X" for "['/opt/X11/lib/libX11.a']") Directory does not exist: /opt/X11 (while checking "Package specific search directory X" for "['/opt/X11/lib64/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.5.sdk/usr/X11 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.5.sdk/usr/X11/lib/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.5.sdk/usr/X11 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.5.sdk/usr/X11/lib64/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/lib/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/lib64/libX11.a']") Directory does not exist: /usr/X11 (while checking "Package specific search directory X" for "['/usr/X11/lib/libX11.a']") Directory does not exist: /usr/X11 (while checking "Package specific search directory X" for "['/usr/X11/lib64/libX11.a']") Directory does not exist: /usr/X11R6 (while checking "Package specific search directory X" for "['/usr/X11R6/lib/libX11.a']") Directory does not exist: /usr/X11R6 (while checking "Package specific search directory X" for "['/usr/X11R6/lib64/libX11.a']") Directory does not exist: /usr/X11R5 (while checking "Package specific search directory X" for "['/usr/X11R5/lib/libX11.a']") Directory does not exist: /usr/X11R5 (while checking "Package specific search directory X" for "['/usr/X11R5/lib64/libX11.a']") Directory does not exist: /usr/X11R4 (while checking "Package specific search directory X" for "['/usr/X11R4/lib/libX11.a']") Directory does not exist: /usr/X11R4 (while checking "Package specific search directory X" for "['/usr/X11R4/lib64/libX11.a']") Directory does not exist: /usr/local/X11 (while checking "Package specific search directory X" for "['/usr/local/X11/lib/libX11.a']") Directory does not exist: /usr/local/X11 (while checking "Package specific search directory X" for "['/usr/local/X11/lib64/libX11.a']") Directory does not exist: /usr/local/X11R6 (while checking "Package specific search directory X" for "['/usr/local/X11R6/lib/libX11.a']") Directory does not exist: /usr/local/X11R6 (while checking "Package specific search directory X" for "['/usr/local/X11R6/lib64/libX11.a']") Directory does not exist: /usr/local/X11R5 (while checking "Package specific search directory X" for "['/usr/local/X11R5/lib/libX11.a']") Directory does not exist: /usr/local/X11R5 (while checking "Package specific search directory X" for "['/usr/local/X11R5/lib64/libX11.a']") Directory does not exist: /usr/local/X11R4 (while checking "Package specific search directory X" for "['/usr/local/X11R4/lib/libX11.a']") Directory does not exist: /usr/local/X11R4 (while checking "Package specific search directory X" for "['/usr/local/X11R4/lib64/libX11.a']") Directory does not exist: /usr/X386 (while checking "Package specific search directory X" for "['/usr/X386/lib/libX11.a']") Directory does not exist: /usr/X386 (while checking "Package specific search directory X" for "['/usr/X386/lib64/libX11.a']") Directory does not exist: /usr/x386 (while checking "Package specific search directory X" for "['/usr/x386/lib/libX11.a']") Directory does not exist: /usr/x386 (while checking "Package specific search directory X" for "['/usr/x386/lib64/libX11.a']") Directory does not exist: /usr/XFree86/X11 (while checking "Package specific search directory X" for "['/usr/XFree86/X11/lib/libX11.a']") Directory does not exist: /usr/XFree86/X11 (while checking "Package specific search directory X" for "['/usr/XFree86/X11/lib64/libX11.a']") Checking for library in Package specific search directory X: ['/usr/local/lib/libX11.a'] Contents: ['lib', 'etc', 'man', 'games', 'share', 'include', 'src', 'bin', 'sbin'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/usr/local/lib/libX11.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lX11 -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory X: ['/usr/local/lib64/libX11.a'] Contents: ['lib', 'etc', 'man', 'games', 'share', 'include', 'src', 'bin', 'sbin'] ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/usr/local/lib64/libX11.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lX11 -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status Popping language C Directory does not exist: /usr/local/x11r5 (while checking "Package specific search directory X" for "['/usr/local/x11r5/lib/libX11.a']") Directory does not exist: /usr/local/x11r5 (while checking "Package specific search directory X" for "['/usr/local/x11r5/lib64/libX11.a']") Directory does not exist: /usr/lpp/Xamples (while checking "Package specific search directory X" for "['/usr/lpp/Xamples/lib/libX11.a']") Directory does not exist: /usr/lpp/Xamples (while checking "Package specific search directory X" for "['/usr/lpp/Xamples/lib64/libX11.a']") Directory does not exist: /usr/openwin (while checking "Package specific search directory X" for "['/usr/openwin/lib/libX11.a']") Directory does not exist: /usr/openwin (while checking "Package specific search directory X" for "['/usr/openwin/lib64/libX11.a']") Directory does not exist: /usr/openwin/share (while checking "Package specific search directory X" for "['/usr/openwin/share/lib/libX11.a']") Directory does not exist: /usr/openwin/share (while checking "Package specific search directory X" for "['/usr/openwin/share/lib64/libX11.a']") ================================================================================ TEST checkSharedLibrary from PETSc.packages.X(/home/lucasogura/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.afterimage(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.afterimage(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Checking for program /usr/local/sbin/cmake...not found Checking for program /usr/local/bin/cmake...not found Checking for program /usr/sbin/cmake...not found Checking for program /usr/bin/cmake...not found Checking for program /sbin/cmake...not found Checking for program /bin/cmake...not found Checking for program /usr/games/cmake...not found Checking for program /usr/local/games/cmake...not found Checking for program /home/lucasogura/cmake...not found Checking for program /home/lucasogura/petsc/bin/win32fe/cmake...not found ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.metis(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.metis(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.parmetis(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.parmetis(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Zoltan(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Zoltan(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.fblaslapack(/home/lucasogura/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional fblaslapack Looking for FBLASLAPACK in directory starting with fblaslapack Could not locate an existing copy of fblaslapack: ['sowing-1.1.16g', 'c2html-0.9.4', 'ViennaCL-1.5.2', 'mpich-3.1'] Downloading fblaslapack =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/fblaslapack-3.4.2.tar.gz for FBLASLAPACK =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/fblaslapack-3.4.2.tar.gz to /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_fblaslapack-3.4.2.tar.gz Extracting /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/_d_fblaslapack-3.4.2.tar.gz Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages; chmod -R a+r fblaslapack-3.4.2;find fblaslapack-3.4.2 -type d -name "*" -exec chmod a+rx {} \; Looking for FBLASLAPACK in directory starting with fblaslapack Found a copy of FBLASLAPACK in fblaslapack-3.4.2 Looking for FBLASLAPACK in directory starting with fblaslapack Found a copy of FBLASLAPACK in fblaslapack-3.4.2 Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -V Popping language FC Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -O0 /tmp/petsc-8RbPfA/config.setCompilers/conftest.F Successful compile: Source: program main end Popping language FC Pushing language FC Popping language FC Have to rebuild fblaslapack, /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2/tmpmakefile != /home/lucasogura/petsc/arch-linux2-c-opt/conf/fblaslapack =============================================================================== Compiling FBLASLAPACK; this may take several minutes =============================================================================== Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2 && make -f tmpmakefile cleanblaslapck cleanlib && make -f tmpmakefile stdout: /bin/rm -f */*.o /bin/rm -f ./*.a ./*.lib cd blas; make lib FC="/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90" FOPTFLAGS="-fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O " FNOOPT="-O0 -fPIC " AR="/usr/bin/ar" AR_FLAGS="cr" RM="/bin/rm -f" LIBNAME="libfblas.a" make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2/blas' /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O caxpy.f ccopy.f cdotc.f cdotu.f cgbmv.f cgemm.f cgemv.f cgerc.f cgeru.f chbmv.f chemm.f chemv.f cher2.f cher2k.f cher.f cherk.f chpmv.f chpr2.f chpr.f crotg.f cscal.f csrot.f csscal.f cswap.f csymm.f csyr2k.f csyrk.f ctbmv.f ctbsv.f ctpmv.f ctpsv.f ctrmm.f ctrmv.f ctrsm.f ctrsv.f dasum.f daxpy.f dcabs1.f dcopy.f ddot.f dgbmv.f dgemm.f dgemv.f dger.f dnrm2.f drot.f drotg.f drotm.f drotmg.f dsbmv.f dscal.f dsdot.f dspmv.f dspr2.f dspr.f dswap.f dsymm.f dsymv.f dsyr2.f dsyr2k.f dsyr.f dsyrk.f dtbmv.f dtbsv.f dtpmv.f dtpsv.f dtrmm.f dtrmv.f dtrsm.f dtrsv.f dzasum.f dznrm2.f icamax.f idamax.f isamax.f izamax.f lsame.f sasum.f saxpy.f scabs1.f scasum.f scnrm2.f scopy.f sdot.f sdsdot.f sgbmv.f sgemm.f sgemv.f sger.f snrm2.f srot.f srotg.f srotm.f srotmg.f ssbmv.f sscal.f sspmv.f sspr2.f sspr.f sswap.f ssymm.f ssymv.f ssyr2.f ssyr2k.f ssyr.f ssyrk.f stbmv.f stbsv.f stpmv.f stpsv.f strmm.f strmv.f strsm.f strsv.f xerbla_array.f xerbla.f zaxpy.f zcopy.f zdotc.f zdotu.f zdrot.f zdscal.f zgbmv.f zgemm.f zgemv.f zgerc.f zgeru.f zhbmv.f zhemm.f zhemv.f zher2.f zher2k.f zher.f zherk.f zhpmv.f zhpr2.f zhpr.f zrotg.f zscal.f zswap.f zsymm.f zsyr2k.f zsyrk.f ztbmv.f ztbsv.f ztpmv.f ztpsv.f ztrmm.f ztrmv.f ztrsm.f ztrsv.f /usr/bin/ar cr ../libfblas.a caxpy.o ccopy.o cdotc.o cdotu.o cgbmv.o cgemm.o cgemv.o cgerc.o cgeru.o chbmv.o chemm.o chemv.o cher2.o cher2k.o cher.o cherk.o chpmv.o chpr2.o chpr.o crotg.o cscal.o csrot.o csscal.o cswap.o csymm.o csyr2k.o csyrk.o ctbmv.o ctbsv.o ctpmv.o ctpsv.o ctrmm.o ctrmv.o ctrsm.o ctrsv.o dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o drotm.o drotmg.o dsbmv.o dscal.o dsdot.o dspmv.o dspr2.o dspr.o dswap.o dsymm.o dsymv.o dsyr2.o dsyr2k.o dsyr.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dzasum.o dznrm2.o icamax.o idamax.o isamax.o izamax.o lsame.o sasum.o saxpy.o scabs1.o scasum.o scnrm2.o scopy.o sdot.o sdsdot.o sgbmv.o sgemm.o sgemv.o sger.o snrm2.o srot.o srotg.o srotm.o srotmg.o ssbmv.o sscal.o sspmv.o sspr2.o sspr.o sswap.o ssymm.o ssymv.o ssyr2.o ssyr2k.o ssyr.o ssyrk.o stbmv.o stbsv.o stpmv.o stpsv.o strmm.o strmv.o strsm.o strsv.o xerbla_array.o xerbla.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdscal.o zgbmv.o zgemm.o zgemv.o zgerc.o zgeru.o zhbmv.o zhemm.o zhemv.o zher2.o zher2k.o zher.o zherk.o zhpmv.o zhpr2.o zhpr.o zrotg.o zscal.o zswap.o zsymm.o zsyr2k.o zsyrk.o ztbmv.o ztbsv.o ztpmv.o ztpsv.o ztrmm.o ztrmv.o ztrsm.o ztrsv.o /bin/rm -f caxpy.o ccopy.o cdotc.o cdotu.o cgbmv.o cgemm.o cgemv.o cgerc.o cgeru.o chbmv.o chemm.o chemv.o cher2.o cher2k.o cher.o cherk.o chpmv.o chpr2.o chpr.o crotg.o cscal.o csrot.o csscal.o cswap.o csymm.o csyr2k.o csyrk.o ctbmv.o ctbsv.o ctpmv.o ctpsv.o ctrmm.o ctrmv.o ctrsm.o ctrsv.o dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o drotm.o drotmg.o dsbmv.o dscal.o dsdot.o dspmv.o dspr2.o dspr.o dswap.o dsymm.o dsymv.o dsyr2.o dsyr2k.o dsyr.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dzasum.o dznrm2.o icamax.o idamax.o isamax.o izamax.o lsame.o sasum.o saxpy.o scabs1.o scasum.o scnrm2.o scopy.o sdot.o sdsdot.o sgbmv.o sgemm.o sgemv.o sger.o snrm2.o srot.o srotg.o srotm.o srotmg.o ssbmv.o sscal.o sspmv.o sspr2.o sspr.o sswap.o ssymm.o ssymv.o ssyr2.o ssyr2k.o ssyr.o ssyrk.o stbmv.o stbsv.o stpmv.o stpsv.o strmm.o strmv.o strsm.o strsv.o xerbla_array.o xerbla.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdscal.o zgbmv.o zgemm.o zgemv.o zgerc.o zgeru.o zhbmv.o zhemm.o zhemv.o zher2.o zher2k.o zher.o zherk.o zhpmv.o zhpr2.o zhpr.o zrotg.o zscal.o zswap.o zsymm.o zsyr2k.o zsyrk.o ztbmv.o ztbsv.o ztpmv.o ztpsv.o ztrmm.o ztrmv.o ztrsm.o ztrsv.o make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2/blas' /usr/bin/ranlib libfblas.a cd lapack; make lib FC="/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90" FOPTFLAGS="-fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O " FNOOPT="-O0 -fPIC " AR="/usr/bin/ar" AR_FLAGS="cr" RM="/bin/rm -f" LIBNAME="libflapack.a" make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2/lapack' /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -O0 -fPIC slaruv.f dlaruv.f /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O cbbcsd.f cbdsqr.f cgbbrd.f cgbcon.f cgbequb.f cgbequ.f cgbrfs.f cgbrfsx.f cgbsv.f cgbsvx.f cgbsvxx.f cgbtf2.f cgbtrf.f cgbtrs.f cgebak.f cgebal.f cgebd2.f cgebrd.f cgecon.f cgeequb.f cgeequ.f cgees.f cgeesx.f cgeev.f cgeevx.f cgegs.f cgegv.f cgehd2.f cgehrd.f cgelq2.f cgelqf.f cgelsd.f cgels.f cgelss.f cgelsx.f cgelsy.f cgemqrt.f cgeql2.f cgeqlf.f cgeqp3.f cgeqpf.f cgeqr2.f cgeqr2p.f cgeqrf.f cgeqrfp.f cgeqrt2.f cgeqrt3.f cgeqrt.f cgerfs.f cgerfsx.f cgerq2.f cgerqf.f cgesc2.f cgesdd.f cgesvd.f cgesv.f cgesvx.f cgesvxx.f cgetc2.f cgetf2.f cgetrf.f cgetri.f cgetrs.f cggbak.f cggbal.f cgges.f cggesx.f cggev.f cggevx.f cggglm.f cgghrd.f cgglse.f cggqrf.f cggrqf.f cggsvd.f cggsvp.f cgtcon.f cgtrfs.f cgtsv.f cgtsvx.f cgttrf.f cgttrs.f cgtts2.f chbevd.f chbev.f chbevx.f chbgst.f chbgvd.f chbgv.f chbgvx.f chbtrd.f checon.f checon_rook.f cheequb.f cheevd.f cheev.f cheevr.f cheevx.f chegs2.f chegst.f chegvd.f chegv.f chegvx.f cherfs.f cherfsx.f chesv.f chesv_rook.f chesvx.f chesvxx.f cheswapr.f chetd2.f chetf2.f chetf2_rook.f chetrd.f chetrf.f chetrf_rook.f chetri2.f chetri2x.f chetri.f chetri_rook.f chetrs2.f chetrs.f chetrs_rook.f chfrk.f chgeqz.f chla_transtype.f chpcon.f chpevd.f chpev.f chpevx.f chpgst.f chpgvd.f chpgv.f chpgvx.f chprfs.f chpsv.f chpsvx.f chptrd.f chptrf.f chptri.f chptrs.f chsein.f chseqr.f clabrd.f clacgv.f clacn2.f clacon.f clacp2.f clacpy.f clacrm.f clacrt.f cladiv.f claed0.f claed7.f claed8.f claein.f claesy.f claev2.f clag2z.f cla_gbamv.f cla_gbrcond_c.f cla_gbrcond_x.f cla_gbrfsx_extended.f cla_gbrpvgrw.f cla_geamv.f cla_gercond_c.f cla_gercond_x.f cla_gerfsx_extended.f cla_gerpvgrw.f clags2.f clagtm.f cla_heamv.f clahef.f clahef_rook.f cla_hercond_c.f cla_hercond_x.f cla_herfsx_extended.f cla_herpvgrw.f clahqr.f clahr2.f clahrd.f claic1.f cla_lin_berr.f clals0.f clalsa.f clalsd.f clangb.f clange.f clangt.f clanhb.f clanhe.f clanhf.f clanhp.f clanhs.f clanht.f clansb.f clansp.f clansy.f clantb.f clantp.f clantr.f clapll.f clapmr.f clapmt.f cla_porcond_c.f cla_porcond_x.f cla_porfsx_extended.f cla_porpvgrw.f claqgb.f claqge.f claqhb.f claqhe.f claqhp.f claqp2.f claqps.f claqr0.f claqr1.f claqr2.f claqr3.f claqr4.f claqr5.f claqsb.f claqsp.f claqsy.f clar1v.f clar2v.f clarcm.f clarfb.f clarf.f clarfg.f clarfgp.f clarft.f clarfx.f clargv.f clarnv.f clarrv.f clarscl2.f clartg.f clartv.f clarzb.f clarz.f clarzt.f clascl2.f clascl.f claset.f clasr.f classq.f claswp.f cla_syamv.f clasyf.f clasyf_rook.f cla_syrcond_c.f cla_syrcond_x.f cla_syrfsx_extended.f cla_syrpvgrw.f clatbs.f clatdf.f clatps.f clatrd.f clatrs.f clatrz.f clatzm.f clauu2.f clauum.f cla_wwaddw.f cpbcon.f cpbequ.f cpbrfs.f cpbstf.f cpbsv.f cpbsvx.f cpbtf2.f cpbtrf.f cpbtrs.f cpftrf.f cpftri.f cpftrs.f cpocon.f cpoequb.f cpoequ.f cporfs.f cporfsx.f cposv.f cposvx.f cposvxx.f cpotf2.f cpotrf.f cpotri.f cpotrs.f cppcon.f cppequ.f cpprfs.f cppsv.f cppsvx.f cpptrf.f cpptri.f cpptrs.f cpstf2.f cpstrf.f cptcon.f cpteqr.f cptrfs.f cptsv.f cptsvx.f cpttrf.f cpttrs.f cptts2.f crot.f cspcon.f cspmv.f cspr.f csprfs.f cspsv.f cspsvx.f csptrf.f csptri.f csptrs.f csrscl.f cstedc.f cstegr.f cstein.f cstemr.f csteqr.f csycon.f csycon_rook.f csyconv.f csyequb.f csymv.f csyr.f csyrfs.f csyrfsx.f csysv.f csysv_rook.f csysvx.f csysvxx.f csyswapr.f csytf2.f csytf2_rook.f csytrf.f csytrf_rook.f csytri2.f csytri2x.f csytri.f csytri_rook.f csytrs2.f csytrs.f csytrs_rook.f ctbcon.f ctbrfs.f ctbtrs.f ctfsm.f ctftri.f ctfttp.f ctfttr.f ctgevc.f ctgex2.f ctgexc.f ctgsen.f ctgsja.f ctgsna.f ctgsy2.f ctgsyl.f ctpcon.f ctpmqrt.f ctpqrt2.f ctpqrt.f ctprfb.f ctprfs.f ctptri.f ctptrs.f ctpttf.f ctpttr.f ctrcon.f ctrevc.f ctrexc.f ctrrfs.f ctrsen.f ctrsna.f ctrsyl.f ctrti2.f ctrtri.f ctrtrs.f ctrttf.f ctrttp.f ctzrqf.f ctzrzf.f cunbdb1.f cunbdb2.f cunbdb3.f cunbdb4.f cunbdb5.f cunbdb6.f cunbdb.f cuncsd2by1.f cuncsd.f cung2l.f cung2r.f cungbr.f cunghr.f cungl2.f cunglq.f cungql.f cungqr.f cungr2.f cungrq.f cungtr.f cunm2l.f cunm2r.f cunmbr.f cunmhr.f cunml2.f cunmlq.f cunmql.f cunmqr.f cunmr2.f cunmr3.f cunmrq.f cunmrz.f cunmtr.f cupgtr.f cupmtr.f dbbcsd.f dbdsdc.f dbdsqr.f ddisna.f dgbbrd.f dgbcon.f dgbequb.f dgbequ.f dgbrfs.f dgbrfsx.f dgbsv.f dgbsvx.f dgbsvxx.f dgbtf2.f dgbtrf.f dgbtrs.f dgebak.f dgebal.f dgebd2.f dgebrd.f dgecon.f dgeequb.f dgeequ.f dgees.f dgeesx.f dgeev.f dgeevx.f dgegs.f dgegv.f dgehd2.f dgehrd.f dgejsv.f dgelq2.f dgelqf.f dgelsd.f dgels.f dgelss.f dgelsx.f dgelsy.f dgemqrt.f dgeql2.f dgeqlf.f dgeqp3.f dgeqpf.f dgeqr2.f dgeqr2p.f dgeqrf.f dgeqrfp.f dgeqrt2.f dgeqrt3.f dgeqrt.f dgerfs.f dgerfsx.f dgerq2.f dgerqf.f dgesc2.f dgesdd.f dgesvd.f dgesv.f dgesvj.f dgesvx.f dgesvxx.f dgetc2.f dgetf2.f dgetrf.f dgetri.f dgetrs.f dggbak.f dggbal.f dgges.f dggesx.f dggev.f dggevx.f dggglm.f dgghrd.f dgglse.f dggqrf.f dggrqf.f dggsvd.f dggsvp.f dgsvj0.f dgsvj1.f dgtcon.f dgtrfs.f dgtsv.f dgtsvx.f dgttrf.f dgttrs.f dgtts2.f dhgeqz.f dhsein.f dhseqr.f disnan.f dlabad.f dlabrd.f dlacn2.f dlacon.f dlacpy.f dladiv.f dlae2.f dlaebz.f dlaed0.f dlaed1.f dlaed2.f dlaed3.f dlaed4.f dlaed5.f dlaed6.f dlaed7.f dlaed8.f dlaed9.f dlaeda.f dlaein.f dlaev2.f dlaexc.f dlag2.f dlag2s.f dla_gbamv.f dla_gbrcond.f dla_gbrfsx_extended.f dla_gbrpvgrw.f dla_geamv.f dla_gercond.f dla_gerfsx_extended.f dla_gerpvgrw.f dlags2.f dlagtf.f dlagtm.f dlagts.f dlagv2.f dlahqr.f dlahr2.f dlahrd.f dlaic1.f dlaisnan.f dla_lin_berr.f dlaln2.f dlals0.f dlalsa.f dlalsd.f dlamrg.f dlaneg.f dlangb.f dlange.f dlangt.f dlanhs.f dlansb.f dlansf.f dlansp.f dlanst.f dlansy.f dlantb.f dlantp.f dlantr.f dlanv2.f dlapll.f dlapmr.f dlapmt.f dla_porcond.f dla_porfsx_extended.f dla_porpvgrw.f dlapy2.f dlapy3.f dlaqgb.f dlaqge.f dlaqp2.f dlaqps.f dlaqr0.f dlaqr1.f dlaqr2.f dlaqr3.f dlaqr4.f dlaqr5.f dlaqsb.f dlaqsp.f dlaqsy.f dlaqtr.f dlar1v.f dlar2v.f dlarfb.f dlarf.f dlarfg.f dlarfgp.f dlarft.f dlarfx.f dlargv.f dlarnv.f dlarra.f dlarrb.f dlarrc.f dlarrd.f dlarre.f dlarrf.f dlarrj.f dlarrk.f dlarrr.f dlarrv.f dlarscl2.f dlartg.f dlartgp.f dlartgs.f dlartv.f dlaruv.f dlarzb.f dlarz.f dlarzt.f dlas2.f dlascl2.f dlascl.f dlasd0.f dlasd1.f dlasd2.f dlasd3.f dlasd4.f dlasd5.f dlasd6.f dlasd7.f dlasd8.f dlasda.f dlasdq.f dlasdt.f dlaset.f dlasq1.f dlasq2.f dlasq3.f dlasq4.f dlasq5.f dlasq6.f dlasr.f dlasrt.f dlassq.f dlasv2.f dlaswp.f dlasy2.f dla_syamv.f dlasyf.f dlasyf_rook.f dla_syrcond.f dla_syrfsx_extended.f dla_syrpvgrw.f dlat2s.f dlatbs.f dlatdf.f dlatps.f dlatrd.f dlatrs.f dlatrz.f dlatzm.f dlauu2.f dlauum.f dla_wwaddw.f dlazq3.f dlazq4.f dopgtr.f dopmtr.f dorbdb1.f dorbdb2.f dorbdb3.f dorbdb4.f dorbdb5.f dorbdb6.f dorbdb.f dorcsd2by1.f dorcsd.f dorg2l.f dorg2r.f dorgbr.f dorghr.f dorgl2.f dorglq.f dorgql.f dorgqr.f dorgr2.f dorgrq.f dorgtr.f dorm2l.f dorm2r.f dormbr.f dormhr.f dorml2.f dormlq.f dormql.f dormqr.f dormr2.f dormr3.f dormrq.f dormrz.f dormtr.f dpbcon.f dpbequ.f dpbrfs.f dpbstf.f dpbsv.f dpbsvx.f dpbtf2.f dpbtrf.f dpbtrs.f dpftrf.f dpftri.f dpftrs.f dpocon.f dpoequb.f dpoequ.f dporfs.f dporfsx.f dposv.f dposvx.f dposvxx.f dpotf2.f dpotrf.f dpotri.f dpotrs.f dppcon.f dppequ.f dpprfs.f dppsv.f dppsvx.f dpptrf.f dpptri.f dpptrs.f dpstf2.f dpstrf.f dptcon.f dpteqr.f dptrfs.f dptsv.f dptsvx.f dpttrf.f dpttrs.f dptts2.f drscl.f dsbevd.f dsbev.f dsbevx.f dsbgst.f dsbgvd.f dsbgv.f dsbgvx.f dsbtrd.f dsfrk.f dsgesv.f dspcon.f dspevd.f dspev.f dspevx.f dspgst.f dspgvd.f dspgv.f dspgvx.f dsposv.f dsprfs.f dspsv.f dspsvx.f dsptrd.f dsptrf.f dsptri.f dsptrs.f dstebz.f dstedc.f dstegr.f dstein.f dstemr.f dsteqr.f dsterf.f dstevd.f dstev.f dstevr.f dstevx.f dsycon.f dsycon_rook.f dsyconv.f dsyequb.f dsyevd.f dsyev.f dsyevr.f dsyevx.f dsygs2.f dsygst.f dsygvd.f dsygv.f dsygvx.f dsyrfs.f dsyrfsx.f dsysv.f dsysv_rook.f dsysvx.f dsysvxx.f dsyswapr.f dsytd2.f dsytf2.f dsytf2_rook.f dsytrd.f dsytrf.f dsytrf_rook.f dsytri2.f dsytri2x.f dsytri.f dsytri_rook.f dsytrs2.f dsytrs.f dsytrs_rook.f dtbcon.f dtbrfs.f dtbtrs.f dtfsm.f dtftri.f dtfttp.f dtfttr.f dtgevc.f dtgex2.f dtgexc.f dtgsen.f dtgsja.f dtgsna.f dtgsy2.f dtgsyl.f dtpcon.f dtpmqrt.f dtpqrt2.f dtpqrt.f dtprfb.f dtprfs.f dtptri.f dtptrs.f dtpttf.f dtpttr.f dtrcon.f dtrevc.f dtrexc.f dtrrfs.f dtrsen.f dtrsna.f dtrsyl.f dtrti2.f dtrtri.f dtrtrs.f dtrttf.f dtrttp.f dtzrqf.f dtzrzf.f dzsum1.f icmax1.f ieeeck.f ilaclc.f ilaclr.f iladiag.f iladlc.f iladlr.f ilaenv.f ilaprec.f ilaslc.f ilaslr.f ilatrans.f ilauplo.f ilaver.f ilazlc.f ilazlr.f iparmq.f izmax1.f lsamen.f sbbcsd.f sbdsdc.f sbdsqr.f scsum1.f sdisna.f sgbbrd.f sgbcon.f sgbequb.f sgbequ.f sgbrfs.f sgbrfsx.f sgbsv.f sgbsvx.f sgbsvxx.f sgbtf2.f sgbtrf.f sgbtrs.f sgebak.f sgebal.f sgebd2.f sgebrd.f sgecon.f sgeequb.f sgeequ.f sgees.f sgeesx.f sgeev.f sgeevx.f sgegs.f sgegv.f sgehd2.f sgehrd.f sgejsv.f sgelq2.f sgelqf.f sgelsd.f sgels.f sgelss.f sgelsx.f sgelsy.f sgemqrt.f sgeql2.f sgeqlf.f sgeqp3.f sgeqpf.f sgeqr2.f sgeqr2p.f sgeqrf.f sgeqrfp.f sgeqrt2.f sgeqrt3.f sgeqrt.f sgerfs.f sgerfsx.f sgerq2.f sgerqf.f sgesc2.f sgesdd.f sgesvd.f sgesv.f sgesvj.f sgesvx.f sgesvxx.f sgetc2.f sgetf2.f sgetrf.f sgetri.f sgetrs.f sggbak.f sggbal.f sgges.f sggesx.f sggev.f sggevx.f sggglm.f sgghrd.f sgglse.f sggqrf.f sggrqf.f sggsvd.f sggsvp.f sgsvj0.f sgsvj1.f sgtcon.f sgtrfs.f sgtsv.f sgtsvx.f sgttrf.f sgttrs.f sgtts2.f shgeqz.f shsein.f shseqr.f sisnan.f slabad.f slabrd.f slacn2.f slacon.f slacpy.f sladiv.f slae2.f slaebz.f slaed0.f slaed1.f slaed2.f slaed3.f slaed4.f slaed5.f slaed6.f slaed7.f slaed8.f slaed9.f slaeda.f slaein.f slaev2.f slaexc.f slag2d.f slag2.f sla_gbamv.f sla_gbrcond.f sla_gbrfsx_extended.f sla_gbrpvgrw.f sla_geamv.f sla_gercond.f sla_gerfsx_extended.f sla_gerpvgrw.f slags2.f slagtf.f slagtm.f slagts.f slagv2.f slahqr.f slahr2.f slahrd.f slaic1.f slaisnan.f sla_lin_berr.f slaln2.f slals0.f slalsa.f slalsd.f slamrg.f slaneg.f slangb.f slange.f slangt.f slanhs.f slansb.f slansf.f slansp.f slanst.f slansy.f slantb.f slantp.f slantr.f slanv2.f slapll.f slapmr.f slapmt.f sla_porcond.f sla_porfsx_extended.f sla_porpvgrw.f slapy2.f slapy3.f slaqgb.f slaqge.f slaqp2.f slaqps.f slaqr0.f slaqr1.f slaqr2.f slaqr3.f slaqr4.f slaqr5.f slaqsb.f slaqsp.f slaqsy.f slaqtr.f slar1v.f slar2v.f slarfb.f slarf.f slarfg.f slarfgp.f slarft.f slarfx.f slargv.f slarnv.f slarra.f slarrb.f slarrc.f slarrd.f slarre.f slarrf.f slarrj.f slarrk.f slarrr.f slarrv.f slarscl2.f slartg.f slartgp.f slartgs.f slartv.f slaruv.f slarzb.f slarz.f slarzt.f slas2.f slascl2.f slascl.f slasd0.f slasd1.f slasd2.f slasd3.f slasd4.f slasd5.f slasd6.f slasd7.f slasd8.f slasda.f slasdq.f slasdt.f slaset.f slasq1.f slasq2.f slasq3.f slasq4.f slasq5.f slasq6.f slasr.f slasrt.f slassq.f slasv2.f slaswp.f slasy2.f sla_syamv.f slasyf.f slasyf_rook.f sla_syrcond.f sla_syrfsx_extended.f sla_syrpvgrw.f slatbs.f slatdf.f slatps.f slatrd.f slatrs.f slatrz.f slatzm.f slauu2.f slauum.f sla_wwaddw.f slazq3.f slazq4.f sopgtr.f sopmtr.f sorbdb1.f sorbdb2.f sorbdb3.f sorbdb4.f sorbdb5.f sorbdb6.f sorbdb.f sorcsd2by1.f sorcsd.f sorg2l.f sorg2r.f sorgbr.f sorghr.f sorgl2.f sorglq.f sorgql.f sorgqr.f sorgr2.f sorgrq.f sorgtr.f sorm2l.f sorm2r.f sormbr.f sormhr.f sorml2.f sormlq.f sormql.f sormqr.f sormr2.f sormr3.f sormrq.f sormrz.f sormtr.f spbcon.f spbequ.f spbrfs.f spbstf.f spbsv.f spbsvx.f spbtf2.f spbtrf.f spbtrs.f spftrf.f spftri.f spftrs.f spocon.f spoequb.f spoequ.f sporfs.f sporfsx.f sposv.f sposvx.f sposvxx.f spotf2.f spotrf.f spotri.f spotrs.f sppcon.f sppequ.f spprfs.f sppsv.f sppsvx.f spptrf.f spptri.f spptrs.f spstf2.f spstrf.f sptcon.f spteqr.f sptrfs.f sptsv.f sptsvx.f spttrf.f spttrs.f sptts2.f srscl.f ssbevd.f ssbev.f ssbevx.f ssbgst.f ssbgvd.f ssbgv.f ssbgvx.f ssbtrd.f ssfrk.f sspcon.f sspevd.f sspev.f sspevx.f sspgst.f sspgvd.f sspgv.f sspgvx.f ssprfs.f sspsv.f sspsvx.f ssptrd.f ssptrf.f ssptri.f ssptrs.f sstebz.f sstedc.f sstegr.f sstein.f sstemr.f ssteqr.f ssterf.f sstevd.f sstev.f sstevr.f sstevx.f ssycon.f ssycon_rook.f ssyconv.f ssyequb.f ssyevd.f ssyev.f ssyevr.f ssyevx.f ssygs2.f ssygst.f ssygvd.f ssygv.f ssygvx.f ssyrfs.f ssyrfsx.f ssysv.f ssysv_rook.f ssysvx.f ssysvxx.f ssyswapr.f ssytd2.f ssytf2.f ssytf2_rook.f ssytrd.f ssytrf.f ssytrf_rook.f ssytri2.f ssytri2x.f ssytri.f ssytri_rook.f ssytrs2.f ssytrs.f ssytrs_rook.f stbcon.f stbrfs.f stbtrs.f stfsm.f stftri.f stfttp.f stfttr.f stgevc.f stgex2.f stgexc.f stgsen.f stgsja.f stgsna.f stgsy2.f stgsyl.f stpcon.f stpmqrt.f stpqrt2.f stpqrt.f stprfb.f stprfs.f stptri.f stptrs.f stpttf.f stpttr.f strcon.f strevc.f strexc.f strrfs.f strsen.f strsna.f strsyl.f strti2.f strtri.f strtrs.f strttf.f strttp.f stzrqf.f stzrzf.f zbbcsd.f zbdsqr.f zcgesv.f zcposv.f zdrscl.f zgbbrd.f zgbcon.f zgbequb.f zgbequ.f zgbrfs.f zgbrfsx.f zgbsv.f zgbsvx.f zgbsvxx.f zgbtf2.f zgbtrf.f zgbtrs.f zgebak.f zgebal.f zgebd2.f zgebrd.f zgecon.f zgeequb.f zgeequ.f zgees.f zgeesx.f zgeev.f zgeevx.f zgegs.f zgegv.f zgehd2.f zgehrd.f zgelq2.f zgelqf.f zgelsd.f zgels.f zgelss.f zgelsx.f zgelsy.f zgemqrt.f zgeql2.f zgeqlf.f zgeqp3.f zgeqpf.f zgeqr2.f zgeqr2p.f zgeqrf.f zgeqrfp.f zgeqrt2.f zgeqrt3.f zgeqrt.f zgerfs.f zgerfsx.f zgerq2.f zgerqf.f zgesc2.f zgesdd.f zgesvd.f zgesv.f zgesvx.f zgesvxx.f zgetc2.f zgetf2.f zgetrf.f zgetri.f zgetrs.f zggbak.f zggbal.f zgges.f zggesx.f zggev.f zggevx.f zggglm.f zgghrd.f zgglse.f zggqrf.f zggrqf.f zggsvd.f zggsvp.f zgtcon.f zgtrfs.f zgtsv.f zgtsvx.f zgttrf.f zgttrs.f zgtts2.f zhbevd.f zhbev.f zhbevx.f zhbgst.f zhbgvd.f zhbgv.f zhbgvx.f zhbtrd.f zhecon.f zhecon_rook.f zheequb.f zheevd.f zheev.f zheevr.f zheevx.f zhegs2.f zhegst.f zhegvd.f zhegv.f zhegvx.f zherfs.f zherfsx.f zhesv.f zhesv_rook.f zhesvx.f zhesvxx.f zheswapr.f zhetd2.f zhetf2.f zhetf2_rook.f zhetrd.f zhetrf.f zhetrf_rook.f zhetri2.f zhetri2x.f zhetri.f zhetri_rook.f zhetrs2.f zhetrs.f zhetrs_rook.f zhfrk.f zhgeqz.f zhpcon.f zhpevd.f zhpev.f zhpevx.f zhpgst.f zhpgvd.f zhpgv.f zhpgvx.f zhprfs.f zhpsv.f zhpsvx.f zhptrd.f zhptrf.f zhptri.f zhptrs.f zhsein.f zhseqr.f zlabrd.f zlacgv.f zlacn2.f zlacon.f zlacp2.f zlacpy.f zlacrm.f zlacrt.f zladiv.f zlaed0.f zlaed7.f zlaed8.f zlaein.f zlaesy.f zlaev2.f zlag2c.f zla_gbamv.f zla_gbrcond_c.f zla_gbrcond_x.f zla_gbrfsx_extended.f zla_gbrpvgrw.f zla_geamv.f zla_gercond_c.f zla_gercond_x.f zla_gerfsx_extended.f zla_gerpvgrw.f zlags2.f zlagtm.f zla_heamv.f zlahef.f zlahef_rook.f zla_hercond_c.f zla_hercond_x.f zla_herfsx_extended.f zla_herpvgrw.f zlahqr.f zlahr2.f zlahrd.f zlaic1.f zla_lin_berr.f zlals0.f zlalsa.f zlalsd.f zlangb.f zlange.f zlangt.f zlanhb.f zlanhe.f zlanhf.f zlanhp.f zlanhs.f zlanht.f zlansb.f zlansp.f zlansy.f zlantb.f zlantp.f zlantr.f zlapll.f zlapmr.f zlapmt.f zla_porcond_c.f zla_porcond_x.f zla_porfsx_extended.f zla_porpvgrw.f zlaqgb.f zlaqge.f zlaqhb.f zlaqhe.f zlaqhp.f zlaqp2.f zlaqps.f zlaqr0.f zlaqr1.f zlaqr2.f zlaqr3.f zlaqr4.f zlaqr5.f zlaqsb.f zlaqsp.f zlaqsy.f zlar1v.f zlar2v.f zlarcm.f zlarfb.f zlarf.f zlarfg.f zlarfgp.f zlarft.f zlarfx.f zlargv.f zlarnv.f zlarrv.f zlarscl2.f zlartg.f zlartv.f zlarzb.f zlarz.f zlarzt.f zlascl2.f zlascl.f zlaset.f zlasr.f zlassq.f zlaswp.f zla_syamv.f zlasyf.f zlasyf_rook.f zla_syrcond_c.f zla_syrcond_x.f zla_syrfsx_extended.f zla_syrpvgrw.f zlat2c.f zlatbs.f zlatdf.f zlatps.f zlatrd.f zlatrs.f zlatrz.f zlatzm.f zlauu2.f zlauum.f zla_wwaddw.f zpbcon.f zpbequ.f zpbrfs.f zpbstf.f zpbsv.f zpbsvx.f zpbtf2.f zpbtrf.f zpbtrs.f zpftrf.f zpftri.f zpftrs.f zpocon.f zpoequb.f zpoequ.f zporfs.f zporfsx.f zposv.f zposvx.f zposvxx.f zpotf2.f zpotrf.f zpotri.f zpotrs.f zppcon.f zppequ.f zpprfs.f zppsv.f zppsvx.f zpptrf.f zpptri.f zpptrs.f zpstf2.f zpstrf.f zptcon.f zpteqr.f zptrfs.f zptsv.f zptsvx.f zpttrf.f zpttrs.f zptts2.f zrot.f zspcon.f zspmv.f zspr.f zsprfs.f zspsv.f zspsvx.f zsptrf.f zsptri.f zsptrs.f zstedc.f zstegr.f zstein.f zstemr.f zsteqr.f zsycon.f zsycon_rook.f zsyconv.f zsyequb.f zsymv.f zsyr.f zsyrfs.f zsyrfsx.f zsysv.f zsysv_rook.f zsysvx.f zsysvxx.f zsyswapr.f zsytf2.f zsytf2_rook.f zsytrf.f zsytrf_rook.f zsytri2.f zsytri2x.f zsytri.f zsytri_rook.f zsytrs2.f zsytrs.f zsytrs_rook.f ztbcon.f ztbrfs.f ztbtrs.f ztfsm.f ztftri.f ztfttp.f ztfttr.f ztgevc.f ztgex2.f ztgexc.f ztgsen.f ztgsja.f ztgsna.f ztgsy2.f ztgsyl.f ztpcon.f ztpmqrt.f ztpqrt2.f ztpqrt.f ztprfb.f ztprfs.f ztptri.f ztptrs.f ztpttf.f ztpttr.f ztrcon.f ztrevc.f ztrexc.f ztrrfs.f ztrsen.f ztrsna.f ztrsyl.f ztrti2.f ztrtri.f ztrtrs.f ztrttf.f ztrttp.f ztzrqf.f ztzrzf.f zunbdb1.f zunbdb2.f zunbdb3.f zunbdb4.f zunbdb5.f zunbdb6.f zunbdb.f zuncsd2by1.f zuncsd.f zung2l.f zung2r.f zungbr.f zunghr.f zungl2.f zunglq.f zungql.f zungqr.f zungr2.f zungrq.f zungtr.f zunm2l.f zunm2r.f zunmbr.f zunmhr.f zunml2.f zunmlq.f zunmql.f zunmqr.f zunmr2.f zunmr3.f zunmrq.f zunmrz.f zunmtr.f zupgtr.f zupmtr.f /usr/bin/ar cr ../libflapack.a slaruv.o dlaruv.o cbbcsd.o cbdsqr.o cgbbrd.o cgbcon.o cgbequb.o cgbequ.o cgbrfs.o cgbrfsx.o cgbsv.o cgbsvx.o cgbsvxx.o cgbtf2.o cgbtrf.o cgbtrs.o cgebak.o cgebal.o cgebd2.o cgebrd.o cgecon.o cgeequb.o cgeequ.o cgees.o cgeesx.o cgeev.o cgeevx.o cgegs.o cgegv.o cgehd2.o cgehrd.o cgelq2.o cgelqf.o cgelsd.o cgels.o cgelss.o cgelsx.o cgelsy.o cgemqrt.o cgeql2.o cgeqlf.o cgeqp3.o cgeqpf.o cgeqr2.o cgeqr2p.o cgeqrf.o cgeqrfp.o cgeqrt2.o cgeqrt3.o cgeqrt.o cgerfs.o cgerfsx.o cgerq2.o cgerqf.o cgesc2.o cgesdd.o cgesvd.o cgesv.o cgesvx.o cgesvxx.o cgetc2.o cgetf2.o cgetrf.o cgetri.o cgetrs.o cggbak.o cggbal.o cgges.o cggesx.o cggev.o cggevx.o cggglm.o cgghrd.o cgglse.o cggqrf.o cggrqf.o cggsvd.o cggsvp.o cgtcon.o cgtrfs.o cgtsv.o cgtsvx.o cgttrf.o cgttrs.o cgtts2.o chbevd.o chbev.o chbevx.o chbgst.o chbgvd.o chbgv.o chbgvx.o chbtrd.o checon.o checon_rook.o cheequb.o cheevd.o cheev.o cheevr.o cheevx.o chegs2.o chegst.o chegvd.o chegv.o chegvx.o cherfs.o cherfsx.o chesv.o chesv_rook.o chesvx.o chesvxx.o cheswapr.o chetd2.o chetf2.o chetf2_rook.o chetrd.o chetrf.o chetrf_rook.o chetri2.o chetri2x.o chetri.o chetri_rook.o chetrs2.o chetrs.o chetrs_rook.o chfrk.o chgeqz.o chla_transtype.o chpcon.o chpevd.o chpev.o chpevx.o chpgst.o chpgvd.o chpgv.o chpgvx.o chprfs.o chpsv.o chpsvx.o chptrd.o chptrf.o chptri.o chptrs.o chsein.o chseqr.o clabrd.o clacgv.o clacn2.o clacon.o clacp2.o clacpy.o clacrm.o clacrt.o cladiv.o claed0.o claed7.o claed8.o claein.o claesy.o claev2.o clag2z.o cla_gbamv.o cla_gbrcond_c.o cla_gbrcond_x.o cla_gbrfsx_extended.o cla_gbrpvgrw.o cla_geamv.o cla_gercond_c.o cla_gercond_x.o cla_gerfsx_extended.o cla_gerpvgrw.o clags2.o clagtm.o cla_heamv.o clahef.o clahef_rook.o cla_hercond_c.o cla_hercond_x.o cla_herfsx_extended.o cla_herpvgrw.o clahqr.o clahr2.o clahrd.o claic1.o cla_lin_berr.o clals0.o clalsa.o clalsd.o clangb.o clange.o clangt.o clanhb.o clanhe.o clanhf.o clanhp.o clanhs.o clanht.o clansb.o clansp.o clansy.o clantb.o clantp.o clantr.o clapll.o clapmr.o clapmt.o cla_porcond_c.o cla_porcond_x.o cla_porfsx_extended.o cla_porpvgrw.o claqgb.o claqge.o claqhb.o claqhe.o claqhp.o claqp2.o claqps.o claqr0.o claqr1.o claqr2.o claqr3.o claqr4.o claqr5.o claqsb.o claqsp.o claqsy.o clar1v.o clar2v.o clarcm.o clarfb.o clarf.o clarfg.o clarfgp.o clarft.o clarfx.o clargv.o clarnv.o clarrv.o clarscl2.o clartg.o clartv.o clarzb.o clarz.o clarzt.o clascl2.o clascl.o claset.o clasr.o classq.o claswp.o cla_syamv.o clasyf.o clasyf_rook.o cla_syrcond_c.o cla_syrcond_x.o cla_syrfsx_extended.o cla_syrpvgrw.o clatbs.o clatdf.o clatps.o clatrd.o clatrs.o clatrz.o clatzm.o clauu2.o clauum.o cla_wwaddw.o cpbcon.o cpbequ.o cpbrfs.o cpbstf.o cpbsv.o cpbsvx.o cpbtf2.o cpbtrf.o cpbtrs.o cpftrf.o cpftri.o cpftrs.o cpocon.o cpoequb.o cpoequ.o cporfs.o cporfsx.o cposv.o cposvx.o cposvxx.o cpotf2.o cpotrf.o cpotri.o cpotrs.o cppcon.o cppequ.o cpprfs.o cppsv.o cppsvx.o cpptrf.o cpptri.o cpptrs.o cpstf2.o cpstrf.o cptcon.o cpteqr.o cptrfs.o cptsv.o cptsvx.o cpttrf.o cpttrs.o cptts2.o crot.o cspcon.o cspmv.o cspr.o csprfs.o cspsv.o cspsvx.o csptrf.o csptri.o csptrs.o csrscl.o cstedc.o cstegr.o cstein.o cstemr.o csteqr.o csycon.o csycon_rook.o csyconv.o csyequb.o csymv.o csyr.o csyrfs.o csyrfsx.o csysv.o csysv_rook.o csysvx.o csysvxx.o csyswapr.o csytf2.o csytf2_rook.o csytrf.o csytrf_rook.o csytri2.o csytri2x.o csytri.o csytri_rook.o csytrs2.o csytrs.o csytrs_rook.o ctbcon.o ctbrfs.o ctbtrs.o ctfsm.o ctftri.o ctfttp.o ctfttr.o ctgevc.o ctgex2.o ctgexc.o ctgsen.o ctgsja.o ctgsna.o ctgsy2.o ctgsyl.o ctpcon.o ctpmqrt.o ctpqrt2.o ctpqrt.o ctprfb.o ctprfs.o ctptri.o ctptrs.o ctpttf.o ctpttr.o ctrcon.o ctrevc.o ctrexc.o ctrrfs.o ctrsen.o ctrsna.o ctrsyl.o ctrti2.o ctrtri.o ctrtrs.o ctrttf.o ctrttp.o ctzrqf.o ctzrzf.o cunbdb1.o cunbdb2.o cunbdb3.o cunbdb4.o cunbdb5.o cunbdb6.o cunbdb.o cuncsd2by1.o cuncsd.o cung2l.o cung2r.o cungbr.o cunghr.o cungl2.o cunglq.o cungql.o cungqr.o cungr2.o cungrq.o cungtr.o cunm2l.o cunm2r.o cunmbr.o cunmhr.o cunml2.o cunmlq.o cunmql.o cunmqr.o cunmr2.o cunmr3.o cunmrq.o cunmrz.o cunmtr.o cupgtr.o cupmtr.o dbbcsd.o dbdsdc.o dbdsqr.o ddisna.o dgbbrd.o dgbcon.o dgbequb.o dgbequ.o dgbrfs.o dgbrfsx.o dgbsv.o dgbsvx.o dgbsvxx.o dgbtf2.o dgbtrf.o dgbtrs.o dgebak.o dgebal.o dgebd2.o dgebrd.o dgecon.o dgeequb.o dgeequ.o dgees.o dgeesx.o dgeev.o dgeevx.o dgegs.o dgegv.o dgehd2.o dgehrd.o dgejsv.o dgelq2.o dgelqf.o dgelsd.o dgels.o dgelss.o dgelsx.o dgelsy.o dgemqrt.o dgeql2.o dgeqlf.o dgeqp3.o dgeqpf.o dgeqr2.o dgeqr2p.o dgeqrf.o dgeqrfp.o dgeqrt2.o dgeqrt3.o dgeqrt.o dgerfs.o dgerfsx.o dgerq2.o dgerqf.o dgesc2.o dgesdd.o dgesvd.o dgesv.o dgesvj.o dgesvx.o dgesvxx.o dgetc2.o dgetf2.o dgetrf.o dgetri.o dgetrs.o dggbak.o dggbal.o dgges.o dggesx.o dggev.o dggevx.o dggglm.o dgghrd.o dgglse.o dggqrf.o dggrqf.o dggsvd.o dggsvp.o dgsvj0.o dgsvj1.o dgtcon.o dgtrfs.o dgtsv.o dgtsvx.o dgttrf.o dgttrs.o dgtts2.o dhgeqz.o dhsein.o dhseqr.o disnan.o dlabad.o dlabrd.o dlacn2.o dlacon.o dlacpy.o dladiv.o dlae2.o dlaebz.o dlaed0.o dlaed1.o dlaed2.o dlaed3.o dlaed4.o dlaed5.o dlaed6.o dlaed7.o dlaed8.o dlaed9.o dlaeda.o dlaein.o dlaev2.o dlaexc.o dlag2.o dlag2s.o dla_gbamv.o dla_gbrcond.o dla_gbrfsx_extended.o dla_gbrpvgrw.o dla_geamv.o dla_gercond.o dla_gerfsx_extended.o dla_gerpvgrw.o dlags2.o dlagtf.o dlagtm.o dlagts.o dlagv2.o dlahqr.o dlahr2.o dlahrd.o dlaic1.o dlaisnan.o dla_lin_berr.o dlaln2.o dlals0.o dlalsa.o dlalsd.o dlamrg.o dlaneg.o dlangb.o dlange.o dlangt.o dlanhs.o dlansb.o dlansf.o dlansp.o dlanst.o dlansy.o dlantb.o dlantp.o dlantr.o dlanv2.o dlapll.o dlapmr.o dlapmt.o dla_porcond.o dla_porfsx_extended.o dla_porpvgrw.o dlapy2.o dlapy3.o dlaqgb.o dlaqge.o dlaqp2.o dlaqps.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlaqsb.o dlaqsp.o dlaqsy.o dlaqtr.o dlar1v.o dlar2v.o dlarfb.o dlarf.o dlarfg.o dlarfgp.o dlarft.o dlarfx.o dlargv.o dlarnv.o dlarra.o dlarrb.o dlarrc.o dlarrd.o dlarre.o dlarrf.o dlarrj.o dlarrk.o dlarrr.o dlarrv.o dlarscl2.o dlartg.o dlartgp.o dlartgs.o dlartv.o dlaruv.o dlarzb.o dlarz.o dlarzt.o dlas2.o dlascl2.o dlascl.o dlasd0.o dlasd1.o dlasd2.o dlasd3.o dlasd4.o dlasd5.o dlasd6.o dlasd7.o dlasd8.o dlasda.o dlasdq.o dlasdt.o dlaset.o dlasq1.o dlasq2.o dlasq3.o dlasq4.o dlasq5.o dlasq6.o dlasr.o dlasrt.o dlassq.o dlasv2.o dlaswp.o dlasy2.o dla_syamv.o dlasyf.o dlasyf_rook.o dla_syrcond.o dla_syrfsx_extended.o dla_syrpvgrw.o dlat2s.o dlatbs.o dlatdf.o dlatps.o dlatrd.o dlatrs.o dlatrz.o dlatzm.o dlauu2.o dlauum.o dla_wwaddw.o dlazq3.o dlazq4.o dopgtr.o dopmtr.o dorbdb1.o dorbdb2.o dorbdb3.o dorbdb4.o dorbdb5.o dorbdb6.o dorbdb.o dorcsd2by1.o dorcsd.o dorg2l.o dorg2r.o dorgbr.o dorghr.o dorgl2.o dorglq.o dorgql.o dorgqr.o dorgr2.o dorgrq.o dorgtr.o dorm2l.o dorm2r.o dormbr.o dormhr.o dorml2.o dormlq.o dormql.o dormqr.o dormr2.o dormr3.o dormrq.o dormrz.o dormtr.o dpbcon.o dpbequ.o dpbrfs.o dpbstf.o dpbsv.o dpbsvx.o dpbtf2.o dpbtrf.o dpbtrs.o dpftrf.o dpftri.o dpftrs.o dpocon.o dpoequb.o dpoequ.o dporfs.o dporfsx.o dposv.o dposvx.o dposvxx.o dpotf2.o dpotrf.o dpotri.o dpotrs.o dppcon.o dppequ.o dpprfs.o dppsv.o dppsvx.o dpptrf.o dpptri.o dpptrs.o dpstf2.o dpstrf.o dptcon.o dpteqr.o dptrfs.o dptsv.o dptsvx.o dpttrf.o dpttrs.o dptts2.o drscl.o dsbevd.o dsbev.o dsbevx.o dsbgst.o dsbgvd.o dsbgv.o dsbgvx.o dsbtrd.o dsfrk.o dsgesv.o dspcon.o dspevd.o dspev.o dspevx.o dspgst.o dspgvd.o dspgv.o dspgvx.o dsposv.o dsprfs.o dspsv.o dspsvx.o dsptrd.o dsptrf.o dsptri.o dsptrs.o dstebz.o dstedc.o dstegr.o dstein.o dstemr.o dsteqr.o dsterf.o dstevd.o dstev.o dstevr.o dstevx.o dsycon.o dsycon_rook.o dsyconv.o dsyequb.o dsyevd.o dsyev.o dsyevr.o dsyevx.o dsygs2.o dsygst.o dsygvd.o dsygv.o dsygvx.o dsyrfs.o dsyrfsx.o dsysv.o dsysv_rook.o dsysvx.o dsysvxx.o dsyswapr.o dsytd2.o dsytf2.o dsytf2_rook.o dsytrd.o dsytrf.o dsytrf_rook.o dsytri2.o dsytri2x.o dsytri.o dsytri_rook.o dsytrs2.o dsytrs.o dsytrs_rook.o dtbcon.o dtbrfs.o dtbtrs.o dtfsm.o dtftri.o dtfttp.o dtfttr.o dtgevc.o dtgex2.o dtgexc.o dtgsen.o dtgsja.o dtgsna.o dtgsy2.o dtgsyl.o dtpcon.o dtpmqrt.o dtpqrt2.o dtpqrt.o dtprfb.o dtprfs.o dtptri.o dtptrs.o dtpttf.o dtpttr.o dtrcon.o dtrevc.o dtrexc.o dtrrfs.o dtrsen.o dtrsna.o dtrsyl.o dtrti2.o dtrtri.o dtrtrs.o dtrttf.o dtrttp.o dtzrqf.o dtzrzf.o dzsum1.o icmax1.o ieeeck.o ilaclc.o ilaclr.o iladiag.o iladlc.o iladlr.o ilaenv.o ilaprec.o ilaslc.o ilaslr.o ilatrans.o ilauplo.o ilaver.o ilazlc.o ilazlr.o iparmq.o izmax1.o lsamen.o sbbcsd.o sbdsdc.o sbdsqr.o scsum1.o sdisna.o sgbbrd.o sgbcon.o sgbequb.o sgbequ.o sgbrfs.o sgbrfsx.o sgbsv.o sgbsvx.o sgbsvxx.o sgbtf2.o sgbtrf.o sgbtrs.o sgebak.o sgebal.o sgebd2.o sgebrd.o sgecon.o sgeequb.o sgeequ.o sgees.o sgeesx.o sgeev.o sgeevx.o sgegs.o sgegv.o sgehd2.o sgehrd.o sgejsv.o sgelq2.o sgelqf.o sgelsd.o sgels.o sgelss.o sgelsx.o sgelsy.o sgemqrt.o sgeql2.o sgeqlf.o sgeqp3.o sgeqpf.o sgeqr2.o sgeqr2p.o sgeqrf.o sgeqrfp.o sgeqrt2.o sgeqrt3.o sgeqrt.o sgerfs.o sgerfsx.o sgerq2.o sgerqf.o sgesc2.o sgesdd.o sgesvd.o sgesv.o sgesvj.o sgesvx.o sgesvxx.o sgetc2.o sgetf2.o sgetrf.o sgetri.o sgetrs.o sggbak.o sggbal.o sgges.o sggesx.o sggev.o sggevx.o sggglm.o sgghrd.o sgglse.o sggqrf.o sggrqf.o sggsvd.o sggsvp.o sgsvj0.o sgsvj1.o sgtcon.o sgtrfs.o sgtsv.o sgtsvx.o sgttrf.o sgttrs.o sgtts2.o shgeqz.o shsein.o shseqr.o sisnan.o slabad.o slabrd.o slacn2.o slacon.o slacpy.o sladiv.o slae2.o slaebz.o slaed0.o slaed1.o slaed2.o slaed3.o slaed4.o slaed5.o slaed6.o slaed7.o slaed8.o slaed9.o slaeda.o slaein.o slaev2.o slaexc.o slag2d.o slag2.o sla_gbamv.o sla_gbrcond.o sla_gbrfsx_extended.o sla_gbrpvgrw.o sla_geamv.o sla_gercond.o sla_gerfsx_extended.o sla_gerpvgrw.o slags2.o slagtf.o slagtm.o slagts.o slagv2.o slahqr.o slahr2.o slahrd.o slaic1.o slaisnan.o sla_lin_berr.o slaln2.o slals0.o slalsa.o slalsd.o slamrg.o slaneg.o slangb.o slange.o slangt.o slanhs.o slansb.o slansf.o slansp.o slanst.o slansy.o slantb.o slantp.o slantr.o slanv2.o slapll.o slapmr.o slapmt.o sla_porcond.o sla_porfsx_extended.o sla_porpvgrw.o slapy2.o slapy3.o slaqgb.o slaqge.o slaqp2.o slaqps.o slaqr0.o slaqr1.o slaqr2.o slaqr3.o slaqr4.o slaqr5.o slaqsb.o slaqsp.o slaqsy.o slaqtr.o slar1v.o slar2v.o slarfb.o slarf.o slarfg.o slarfgp.o slarft.o slarfx.o slargv.o slarnv.o slarra.o slarrb.o slarrc.o slarrd.o slarre.o slarrf.o slarrj.o slarrk.o slarrr.o slarrv.o slarscl2.o slartg.o slartgp.o slartgs.o slartv.o slaruv.o slarzb.o slarz.o slarzt.o slas2.o slascl2.o slascl.o slasd0.o slasd1.o slasd2.o slasd3.o slasd4.o slasd5.o slasd6.o slasd7.o slasd8.o slasda.o slasdq.o slasdt.o slaset.o slasq1.o slasq2.o slasq3.o slasq4.o slasq5.o slasq6.o slasr.o slasrt.o slassq.o slasv2.o slaswp.o slasy2.o sla_syamv.o slasyf.o slasyf_rook.o sla_syrcond.o sla_syrfsx_extended.o sla_syrpvgrw.o slatbs.o slatdf.o slatps.o slatrd.o slatrs.o slatrz.o slatzm.o slauu2.o slauum.o sla_wwaddw.o slazq3.o slazq4.o sopgtr.o sopmtr.o sorbdb1.o sorbdb2.o sorbdb3.o sorbdb4.o sorbdb5.o sorbdb6.o sorbdb.o sorcsd2by1.o sorcsd.o sorg2l.o sorg2r.o sorgbr.o sorghr.o sorgl2.o sorglq.o sorgql.o sorgqr.o sorgr2.o sorgrq.o sorgtr.o sorm2l.o sorm2r.o sormbr.o sormhr.o sorml2.o sormlq.o sormql.o sormqr.o sormr2.o sormr3.o sormrq.o sormrz.o sormtr.o spbcon.o spbequ.o spbrfs.o spbstf.o spbsv.o spbsvx.o spbtf2.o spbtrf.o spbtrs.o spftrf.o spftri.o spftrs.o spocon.o spoequb.o spoequ.o sporfs.o sporfsx.o sposv.o sposvx.o sposvxx.o spotf2.o spotrf.o spotri.o spotrs.o sppcon.o sppequ.o spprfs.o sppsv.o sppsvx.o spptrf.o spptri.o spptrs.o spstf2.o spstrf.o sptcon.o spteqr.o sptrfs.o sptsv.o sptsvx.o spttrf.o spttrs.o sptts2.o srscl.o ssbevd.o ssbev.o ssbevx.o ssbgst.o ssbgvd.o ssbgv.o ssbgvx.o ssbtrd.o ssfrk.o sspcon.o sspevd.o sspev.o sspevx.o sspgst.o sspgvd.o sspgv.o sspgvx.o ssprfs.o sspsv.o sspsvx.o ssptrd.o ssptrf.o ssptri.o ssptrs.o sstebz.o sstedc.o sstegr.o sstein.o sstemr.o ssteqr.o ssterf.o sstevd.o sstev.o sstevr.o sstevx.o ssycon.o ssycon_rook.o ssyconv.o ssyequb.o ssyevd.o ssyev.o ssyevr.o ssyevx.o ssygs2.o ssygst.o ssygvd.o ssygv.o ssygvx.o ssyrfs.o ssyrfsx.o ssysv.o ssysv_rook.o ssysvx.o ssysvxx.o ssyswapr.o ssytd2.o ssytf2.o ssytf2_rook.o ssytrd.o ssytrf.o ssytrf_rook.o ssytri2.o ssytri2x.o ssytri.o ssytri_rook.o ssytrs2.o ssytrs.o ssytrs_rook.o stbcon.o stbrfs.o stbtrs.o stfsm.o stftri.o stfttp.o stfttr.o stgevc.o stgex2.o stgexc.o stgsen.o stgsja.o stgsna.o stgsy2.o stgsyl.o stpcon.o stpmqrt.o stpqrt2.o stpqrt.o stprfb.o stprfs.o stptri.o stptrs.o stpttf.o stpttr.o strcon.o strevc.o strexc.o strrfs.o strsen.o strsna.o strsyl.o strti2.o strtri.o strtrs.o strttf.o strttp.o stzrqf.o stzrzf.o zbbcsd.o zbdsqr.o zcgesv.o zcposv.o zdrscl.o zgbbrd.o zgbcon.o zgbequb.o zgbequ.o zgbrfs.o zgbrfsx.o zgbsv.o zgbsvx.o zgbsvxx.o zgbtf2.o zgbtrf.o zgbtrs.o zgebak.o zgebal.o zgebd2.o zgebrd.o zgecon.o zgeequb.o zgeequ.o zgees.o zgeesx.o zgeev.o zgeevx.o zgegs.o zgegv.o zgehd2.o zgehrd.o zgelq2.o zgelqf.o zgelsd.o zgels.o zgelss.o zgelsx.o zgelsy.o zgemqrt.o zgeql2.o zgeqlf.o zgeqp3.o zgeqpf.o zgeqr2.o zgeqr2p.o zgeqrf.o zgeqrfp.o zgeqrt2.o zgeqrt3.o zgeqrt.o zgerfs.o zgerfsx.o zgerq2.o zgerqf.o zgesc2.o zgesdd.o zgesvd.o zgesv.o zgesvx.o zgesvxx.o zgetc2.o zgetf2.o zgetrf.o zgetri.o zgetrs.o zggbak.o zggbal.o zgges.o zggesx.o zggev.o zggevx.o zggglm.o zgghrd.o zgglse.o zggqrf.o zggrqf.o zggsvd.o zggsvp.o zgtcon.o zgtrfs.o zgtsv.o zgtsvx.o zgttrf.o zgttrs.o zgtts2.o zhbevd.o zhbev.o zhbevx.o zhbgst.o zhbgvd.o zhbgv.o zhbgvx.o zhbtrd.o zhecon.o zhecon_rook.o zheequb.o zheevd.o zheev.o zheevr.o zheevx.o zhegs2.o zhegst.o zhegvd.o zhegv.o zhegvx.o zherfs.o zherfsx.o zhesv.o zhesv_rook.o zhesvx.o zhesvxx.o zheswapr.o zhetd2.o zhetf2.o zhetf2_rook.o zhetrd.o zhetrf.o zhetrf_rook.o zhetri2.o zhetri2x.o zhetri.o zhetri_rook.o zhetrs2.o zhetrs.o zhetrs_rook.o zhfrk.o zhgeqz.o zhpcon.o zhpevd.o zhpev.o zhpevx.o zhpgst.o zhpgvd.o zhpgv.o zhpgvx.o zhprfs.o zhpsv.o zhpsvx.o zhptrd.o zhptrf.o zhptri.o zhptrs.o zhsein.o zhseqr.o zlabrd.o zlacgv.o zlacn2.o zlacon.o zlacp2.o zlacpy.o zlacrm.o zlacrt.o zladiv.o zlaed0.o zlaed7.o zlaed8.o zlaein.o zlaesy.o zlaev2.o zlag2c.o zla_gbamv.o zla_gbrcond_c.o zla_gbrcond_x.o zla_gbrfsx_extended.o zla_gbrpvgrw.o zla_geamv.o zla_gercond_c.o zla_gercond_x.o zla_gerfsx_extended.o zla_gerpvgrw.o zlags2.o zlagtm.o zla_heamv.o zlahef.o zlahef_rook.o zla_hercond_c.o zla_hercond_x.o zla_herfsx_extended.o zla_herpvgrw.o zlahqr.o zlahr2.o zlahrd.o zlaic1.o zla_lin_berr.o zlals0.o zlalsa.o zlalsd.o zlangb.o zlange.o zlangt.o zlanhb.o zlanhe.o zlanhf.o zlanhp.o zlanhs.o zlanht.o zlansb.o zlansp.o zlansy.o zlantb.o zlantp.o zlantr.o zlapll.o zlapmr.o zlapmt.o zla_porcond_c.o zla_porcond_x.o zla_porfsx_extended.o zla_porpvgrw.o zlaqgb.o zlaqge.o zlaqhb.o zlaqhe.o zlaqhp.o zlaqp2.o zlaqps.o zlaqr0.o zlaqr1.o zlaqr2.o zlaqr3.o zlaqr4.o zlaqr5.o zlaqsb.o zlaqsp.o zlaqsy.o zlar1v.o zlar2v.o zlarcm.o zlarfb.o zlarf.o zlarfg.o zlarfgp.o zlarft.o zlarfx.o zlargv.o zlarnv.o zlarrv.o zlarscl2.o zlartg.o zlartv.o zlarzb.o zlarz.o zlarzt.o zlascl2.o zlascl.o zlaset.o zlasr.o zlassq.o zlaswp.o zla_syamv.o zlasyf.o zlasyf_rook.o zla_syrcond_c.o zla_syrcond_x.o zla_syrfsx_extended.o zla_syrpvgrw.o zlat2c.o zlatbs.o zlatdf.o zlatps.o zlatrd.o zlatrs.o zlatrz.o zlatzm.o zlauu2.o zlauum.o zla_wwaddw.o zpbcon.o zpbequ.o zpbrfs.o zpbstf.o zpbsv.o zpbsvx.o zpbtf2.o zpbtrf.o zpbtrs.o zpftrf.o zpftri.o zpftrs.o zpocon.o zpoequb.o zpoequ.o zporfs.o zporfsx.o zposv.o zposvx.o zposvxx.o zpotf2.o zpotrf.o zpotri.o zpotrs.o zppcon.o zppequ.o zpprfs.o zppsv.o zppsvx.o zpptrf.o zpptri.o zpptrs.o zpstf2.o zpstrf.o zptcon.o zpteqr.o zptrfs.o zptsv.o zptsvx.o zpttrf.o zpttrs.o zptts2.o zrot.o zspcon.o zspmv.o zspr.o zsprfs.o zspsv.o zspsvx.o zsptrf.o zsptri.o zsptrs.o zstedc.o zstegr.o zstein.o zstemr.o zsteqr.o zsycon.o zsycon_rook.o zsyconv.o zsyequb.o zsymv.o zsyr.o zsyrfs.o zsyrfsx.o zsysv.o zsysv_rook.o zsysvx.o zsysvxx.o zsyswapr.o zsytf2.o zsytf2_rook.o zsytrf.o zsytrf_rook.o zsytri2.o zsytri2x.o zsytri.o zsytri_rook.o zsytrs2.o zsytrs.o zsytrs_rook.o ztbcon.o ztbrfs.o ztbtrs.o ztfsm.o ztftri.o ztfttp.o ztfttr.o ztgevc.o ztgex2.o ztgexc.o ztgsen.o ztgsja.o ztgsna.o ztgsy2.o ztgsyl.o ztpcon.o ztpmqrt.o ztpqrt2.o ztpqrt.o ztprfb.o ztprfs.o ztptri.o ztptrs.o ztpttf.o ztpttr.o ztrcon.o ztrevc.o ztrexc.o ztrrfs.o ztrsen.o ztrsna.o ztrsyl.o ztrti2.o ztrtri.o ztrtrs.o ztrttf.o ztrttp.o ztzrqf.o ztzrzf.o zunbdb1.o zunbdb2.o zunbdb3.o zunbdb4.o zunbdb5.o zunbdb6.o zunbdb.o zuncsd2by1.o zuncsd.o zung2l.o zung2r.o zungbr.o zunghr.o zungl2.o zunglq.o zungql.o zungqr.o zungr2.o zungrq.o zungtr.o zunm2l.o zunm2r.o zunmbr.o zunmhr.o zunml2.o zunmlq.o zunmql.o zunmqr.o zunmr2.o zunmr3.o zunmrq.o zunmrz.o zunmtr.o zupgtr.o zupmtr.o /bin/rm -f slaruv.o dlaruv.o cbbcsd.o cbdsqr.o cgbbrd.o cgbcon.o cgbequb.o cgbequ.o cgbrfs.o cgbrfsx.o cgbsv.o cgbsvx.o cgbsvxx.o cgbtf2.o cgbtrf.o cgbtrs.o cgebak.o cgebal.o cgebd2.o cgebrd.o cgecon.o cgeequb.o cgeequ.o cgees.o cgeesx.o cgeev.o cgeevx.o cgegs.o cgegv.o cgehd2.o cgehrd.o cgelq2.o cgelqf.o cgelsd.o cgels.o cgelss.o cgelsx.o cgelsy.o cgemqrt.o cgeql2.o cgeqlf.o cgeqp3.o cgeqpf.o cgeqr2.o cgeqr2p.o cgeqrf.o cgeqrfp.o cgeqrt2.o cgeqrt3.o cgeqrt.o cgerfs.o cgerfsx.o cgerq2.o cgerqf.o cgesc2.o cgesdd.o cgesvd.o cgesv.o cgesvx.o cgesvxx.o cgetc2.o cgetf2.o cgetrf.o cgetri.o cgetrs.o cggbak.o cggbal.o cgges.o cggesx.o cggev.o cggevx.o cggglm.o cgghrd.o cgglse.o cggqrf.o cggrqf.o cggsvd.o cggsvp.o cgtcon.o cgtrfs.o cgtsv.o cgtsvx.o cgttrf.o cgttrs.o cgtts2.o chbevd.o chbev.o chbevx.o chbgst.o chbgvd.o chbgv.o chbgvx.o chbtrd.o checon.o checon_rook.o cheequb.o cheevd.o cheev.o cheevr.o cheevx.o chegs2.o chegst.o chegvd.o chegv.o chegvx.o cherfs.o cherfsx.o chesv.o chesv_rook.o chesvx.o chesvxx.o cheswapr.o chetd2.o chetf2.o chetf2_rook.o chetrd.o chetrf.o chetrf_rook.o chetri2.o chetri2x.o chetri.o chetri_rook.o chetrs2.o chetrs.o chetrs_rook.o chfrk.o chgeqz.o chla_transtype.o chpcon.o chpevd.o chpev.o chpevx.o chpgst.o chpgvd.o chpgv.o chpgvx.o chprfs.o chpsv.o chpsvx.o chptrd.o chptrf.o chptri.o chptrs.o chsein.o chseqr.o clabrd.o clacgv.o clacn2.o clacon.o clacp2.o clacpy.o clacrm.o clacrt.o cladiv.o claed0.o claed7.o claed8.o claein.o claesy.o claev2.o clag2z.o cla_gbamv.o cla_gbrcond_c.o cla_gbrcond_x.o cla_gbrfsx_extended.o cla_gbrpvgrw.o cla_geamv.o cla_gercond_c.o cla_gercond_x.o cla_gerfsx_extended.o cla_gerpvgrw.o clags2.o clagtm.o cla_heamv.o clahef.o clahef_rook.o cla_hercond_c.o cla_hercond_x.o cla_herfsx_extended.o cla_herpvgrw.o clahqr.o clahr2.o clahrd.o claic1.o cla_lin_berr.o clals0.o clalsa.o clalsd.o clangb.o clange.o clangt.o clanhb.o clanhe.o clanhf.o clanhp.o clanhs.o clanht.o clansb.o clansp.o clansy.o clantb.o clantp.o clantr.o clapll.o clapmr.o clapmt.o cla_porcond_c.o cla_porcond_x.o cla_porfsx_extended.o cla_porpvgrw.o claqgb.o claqge.o claqhb.o claqhe.o claqhp.o claqp2.o claqps.o claqr0.o claqr1.o claqr2.o claqr3.o claqr4.o claqr5.o claqsb.o claqsp.o claqsy.o clar1v.o clar2v.o clarcm.o clarfb.o clarf.o clarfg.o clarfgp.o clarft.o clarfx.o clargv.o clarnv.o clarrv.o clarscl2.o clartg.o clartv.o clarzb.o clarz.o clarzt.o clascl2.o clascl.o claset.o clasr.o classq.o claswp.o cla_syamv.o clasyf.o clasyf_rook.o cla_syrcond_c.o cla_syrcond_x.o cla_syrfsx_extended.o cla_syrpvgrw.o clatbs.o clatdf.o clatps.o clatrd.o clatrs.o clatrz.o clatzm.o clauu2.o clauum.o cla_wwaddw.o cpbcon.o cpbequ.o cpbrfs.o cpbstf.o cpbsv.o cpbsvx.o cpbtf2.o cpbtrf.o cpbtrs.o cpftrf.o cpftri.o cpftrs.o cpocon.o cpoequb.o cpoequ.o cporfs.o cporfsx.o cposv.o cposvx.o cposvxx.o cpotf2.o cpotrf.o cpotri.o cpotrs.o cppcon.o cppequ.o cpprfs.o cppsv.o cppsvx.o cpptrf.o cpptri.o cpptrs.o cpstf2.o cpstrf.o cptcon.o cpteqr.o cptrfs.o cptsv.o cptsvx.o cpttrf.o cpttrs.o cptts2.o crot.o cspcon.o cspmv.o cspr.o csprfs.o cspsv.o cspsvx.o csptrf.o csptri.o csptrs.o csrscl.o cstedc.o cstegr.o cstein.o cstemr.o csteqr.o csycon.o csycon_rook.o csyconv.o csyequb.o csymv.o csyr.o csyrfs.o csyrfsx.o csysv.o csysv_rook.o csysvx.o csysvxx.o csyswapr.o csytf2.o csytf2_rook.o csytrf.o csytrf_rook.o csytri2.o csytri2x.o csytri.o csytri_rook.o csytrs2.o csytrs.o csytrs_rook.o ctbcon.o ctbrfs.o ctbtrs.o ctfsm.o ctftri.o ctfttp.o ctfttr.o ctgevc.o ctgex2.o ctgexc.o ctgsen.o ctgsja.o ctgsna.o ctgsy2.o ctgsyl.o ctpcon.o ctpmqrt.o ctpqrt2.o ctpqrt.o ctprfb.o ctprfs.o ctptri.o ctptrs.o ctpttf.o ctpttr.o ctrcon.o ctrevc.o ctrexc.o ctrrfs.o ctrsen.o ctrsna.o ctrsyl.o ctrti2.o ctrtri.o ctrtrs.o ctrttf.o ctrttp.o ctzrqf.o ctzrzf.o cunbdb1.o cunbdb2.o cunbdb3.o cunbdb4.o cunbdb5.o cunbdb6.o cunbdb.o cuncsd2by1.o cuncsd.o cung2l.o cung2r.o cungbr.o cunghr.o cungl2.o cunglq.o cungql.o cungqr.o cungr2.o cungrq.o cungtr.o cunm2l.o cunm2r.o cunmbr.o cunmhr.o cunml2.o cunmlq.o cunmql.o cunmqr.o cunmr2.o cunmr3.o cunmrq.o cunmrz.o cunmtr.o cupgtr.o cupmtr.o dbbcsd.o dbdsdc.o dbdsqr.o ddisna.o dgbbrd.o dgbcon.o dgbequb.o dgbequ.o dgbrfs.o dgbrfsx.o dgbsv.o dgbsvx.o dgbsvxx.o dgbtf2.o dgbtrf.o dgbtrs.o dgebak.o dgebal.o dgebd2.o dgebrd.o dgecon.o dgeequb.o dgeequ.o dgees.o dgeesx.o dgeev.o dgeevx.o dgegs.o dgegv.o dgehd2.o dgehrd.o dgejsv.o dgelq2.o dgelqf.o dgelsd.o dgels.o dgelss.o dgelsx.o dgelsy.o dgemqrt.o dgeql2.o dgeqlf.o dgeqp3.o dgeqpf.o dgeqr2.o dgeqr2p.o dgeqrf.o dgeqrfp.o dgeqrt2.o dgeqrt3.o dgeqrt.o dgerfs.o dgerfsx.o dgerq2.o dgerqf.o dgesc2.o dgesdd.o dgesvd.o dgesv.o dgesvj.o dgesvx.o dgesvxx.o dgetc2.o dgetf2.o dgetrf.o dgetri.o dgetrs.o dggbak.o dggbal.o dgges.o dggesx.o dggev.o dggevx.o dggglm.o dgghrd.o dgglse.o dggqrf.o dggrqf.o dggsvd.o dggsvp.o dgsvj0.o dgsvj1.o dgtcon.o dgtrfs.o dgtsv.o dgtsvx.o dgttrf.o dgttrs.o dgtts2.o dhgeqz.o dhsein.o dhseqr.o disnan.o dlabad.o dlabrd.o dlacn2.o dlacon.o dlacpy.o dladiv.o dlae2.o dlaebz.o dlaed0.o dlaed1.o dlaed2.o dlaed3.o dlaed4.o dlaed5.o dlaed6.o dlaed7.o dlaed8.o dlaed9.o dlaeda.o dlaein.o dlaev2.o dlaexc.o dlag2.o dlag2s.o dla_gbamv.o dla_gbrcond.o dla_gbrfsx_extended.o dla_gbrpvgrw.o dla_geamv.o dla_gercond.o dla_gerfsx_extended.o dla_gerpvgrw.o dlags2.o dlagtf.o dlagtm.o dlagts.o dlagv2.o dlahqr.o dlahr2.o dlahrd.o dlaic1.o dlaisnan.o dla_lin_berr.o dlaln2.o dlals0.o dlalsa.o dlalsd.o dlamrg.o dlaneg.o dlangb.o dlange.o dlangt.o dlanhs.o dlansb.o dlansf.o dlansp.o dlanst.o dlansy.o dlantb.o dlantp.o dlantr.o dlanv2.o dlapll.o dlapmr.o dlapmt.o dla_porcond.o dla_porfsx_extended.o dla_porpvgrw.o dlapy2.o dlapy3.o dlaqgb.o dlaqge.o dlaqp2.o dlaqps.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlaqsb.o dlaqsp.o dlaqsy.o dlaqtr.o dlar1v.o dlar2v.o dlarfb.o dlarf.o dlarfg.o dlarfgp.o dlarft.o dlarfx.o dlargv.o dlarnv.o dlarra.o dlarrb.o dlarrc.o dlarrd.o dlarre.o dlarrf.o dlarrj.o dlarrk.o dlarrr.o dlarrv.o dlarscl2.o dlartg.o dlartgp.o dlartgs.o dlartv.o dlaruv.o dlarzb.o dlarz.o dlarzt.o dlas2.o dlascl2.o dlascl.o dlasd0.o dlasd1.o dlasd2.o dlasd3.o dlasd4.o dlasd5.o dlasd6.o dlasd7.o dlasd8.o dlasda.o dlasdq.o dlasdt.o dlaset.o dlasq1.o dlasq2.o dlasq3.o dlasq4.o dlasq5.o dlasq6.o dlasr.o dlasrt.o dlassq.o dlasv2.o dlaswp.o dlasy2.o dla_syamv.o dlasyf.o dlasyf_rook.o dla_syrcond.o dla_syrfsx_extended.o dla_syrpvgrw.o dlat2s.o dlatbs.o dlatdf.o dlatps.o dlatrd.o dlatrs.o dlatrz.o dlatzm.o dlauu2.o dlauum.o dla_wwaddw.o dlazq3.o dlazq4.o dopgtr.o dopmtr.o dorbdb1.o dorbdb2.o dorbdb3.o dorbdb4.o dorbdb5.o dorbdb6.o dorbdb.o dorcsd2by1.o dorcsd.o dorg2l.o dorg2r.o dorgbr.o dorghr.o dorgl2.o dorglq.o dorgql.o dorgqr.o dorgr2.o dorgrq.o dorgtr.o dorm2l.o dorm2r.o dormbr.o dormhr.o dorml2.o dormlq.o dormql.o dormqr.o dormr2.o dormr3.o dormrq.o dormrz.o dormtr.o dpbcon.o dpbequ.o dpbrfs.o dpbstf.o dpbsv.o dpbsvx.o dpbtf2.o dpbtrf.o dpbtrs.o dpftrf.o dpftri.o dpftrs.o dpocon.o dpoequb.o dpoequ.o dporfs.o dporfsx.o dposv.o dposvx.o dposvxx.o dpotf2.o dpotrf.o dpotri.o dpotrs.o dppcon.o dppequ.o dpprfs.o dppsv.o dppsvx.o dpptrf.o dpptri.o dpptrs.o dpstf2.o dpstrf.o dptcon.o dpteqr.o dptrfs.o dptsv.o dptsvx.o dpttrf.o dpttrs.o dptts2.o drscl.o dsbevd.o dsbev.o dsbevx.o dsbgst.o dsbgvd.o dsbgv.o dsbgvx.o dsbtrd.o dsfrk.o dsgesv.o dspcon.o dspevd.o dspev.o dspevx.o dspgst.o dspgvd.o dspgv.o dspgvx.o dsposv.o dsprfs.o dspsv.o dspsvx.o dsptrd.o dsptrf.o dsptri.o dsptrs.o dstebz.o dstedc.o dstegr.o dstein.o dstemr.o dsteqr.o dsterf.o dstevd.o dstev.o dstevr.o dstevx.o dsycon.o dsycon_rook.o dsyconv.o dsyequb.o dsyevd.o dsyev.o dsyevr.o dsyevx.o dsygs2.o dsygst.o dsygvd.o dsygv.o dsygvx.o dsyrfs.o dsyrfsx.o dsysv.o dsysv_rook.o dsysvx.o dsysvxx.o dsyswapr.o dsytd2.o dsytf2.o dsytf2_rook.o dsytrd.o dsytrf.o dsytrf_rook.o dsytri2.o dsytri2x.o dsytri.o dsytri_rook.o dsytrs2.o dsytrs.o dsytrs_rook.o dtbcon.o dtbrfs.o dtbtrs.o dtfsm.o dtftri.o dtfttp.o dtfttr.o dtgevc.o dtgex2.o dtgexc.o dtgsen.o dtgsja.o dtgsna.o dtgsy2.o dtgsyl.o dtpcon.o dtpmqrt.o dtpqrt2.o dtpqrt.o dtprfb.o dtprfs.o dtptri.o dtptrs.o dtpttf.o dtpttr.o dtrcon.o dtrevc.o dtrexc.o dtrrfs.o dtrsen.o dtrsna.o dtrsyl.o dtrti2.o dtrtri.o dtrtrs.o dtrttf.o dtrttp.o dtzrqf.o dtzrzf.o dzsum1.o icmax1.o ieeeck.o ilaclc.o ilaclr.o iladiag.o iladlc.o iladlr.o ilaenv.o ilaprec.o ilaslc.o ilaslr.o ilatrans.o ilauplo.o ilaver.o ilazlc.o ilazlr.o iparmq.o izmax1.o lsamen.o sbbcsd.o sbdsdc.o sbdsqr.o scsum1.o sdisna.o sgbbrd.o sgbcon.o sgbequb.o sgbequ.o sgbrfs.o sgbrfsx.o sgbsv.o sgbsvx.o sgbsvxx.o sgbtf2.o sgbtrf.o sgbtrs.o sgebak.o sgebal.o sgebd2.o sgebrd.o sgecon.o sgeequb.o sgeequ.o sgees.o sgeesx.o sgeev.o sgeevx.o sgegs.o sgegv.o sgehd2.o sgehrd.o sgejsv.o sgelq2.o sgelqf.o sgelsd.o sgels.o sgelss.o sgelsx.o sgelsy.o sgemqrt.o sgeql2.o sgeqlf.o sgeqp3.o sgeqpf.o sgeqr2.o sgeqr2p.o sgeqrf.o sgeqrfp.o sgeqrt2.o sgeqrt3.o sgeqrt.o sgerfs.o sgerfsx.o sgerq2.o sgerqf.o sgesc2.o sgesdd.o sgesvd.o sgesv.o sgesvj.o sgesvx.o sgesvxx.o sgetc2.o sgetf2.o sgetrf.o sgetri.o sgetrs.o sggbak.o sggbal.o sgges.o sggesx.o sggev.o sggevx.o sggglm.o sgghrd.o sgglse.o sggqrf.o sggrqf.o sggsvd.o sggsvp.o sgsvj0.o sgsvj1.o sgtcon.o sgtrfs.o sgtsv.o sgtsvx.o sgttrf.o sgttrs.o sgtts2.o shgeqz.o shsein.o shseqr.o sisnan.o slabad.o slabrd.o slacn2.o slacon.o slacpy.o sladiv.o slae2.o slaebz.o slaed0.o slaed1.o slaed2.o slaed3.o slaed4.o slaed5.o slaed6.o slaed7.o slaed8.o slaed9.o slaeda.o slaein.o slaev2.o slaexc.o slag2d.o slag2.o sla_gbamv.o sla_gbrcond.o sla_gbrfsx_extended.o sla_gbrpvgrw.o sla_geamv.o sla_gercond.o sla_gerfsx_extended.o sla_gerpvgrw.o slags2.o slagtf.o slagtm.o slagts.o slagv2.o slahqr.o slahr2.o slahrd.o slaic1.o slaisnan.o sla_lin_berr.o slaln2.o slals0.o slalsa.o slalsd.o slamrg.o slaneg.o slangb.o slange.o slangt.o slanhs.o slansb.o slansf.o slansp.o slanst.o slansy.o slantb.o slantp.o slantr.o slanv2.o slapll.o slapmr.o slapmt.o sla_porcond.o sla_porfsx_extended.o sla_porpvgrw.o slapy2.o slapy3.o slaqgb.o slaqge.o slaqp2.o slaqps.o slaqr0.o slaqr1.o slaqr2.o slaqr3.o slaqr4.o slaqr5.o slaqsb.o slaqsp.o slaqsy.o slaqtr.o slar1v.o slar2v.o slarfb.o slarf.o slarfg.o slarfgp.o slarft.o slarfx.o slargv.o slarnv.o slarra.o slarrb.o slarrc.o slarrd.o slarre.o slarrf.o slarrj.o slarrk.o slarrr.o slarrv.o slarscl2.o slartg.o slartgp.o slartgs.o slartv.o slaruv.o slarzb.o slarz.o slarzt.o slas2.o slascl2.o slascl.o slasd0.o slasd1.o slasd2.o slasd3.o slasd4.o slasd5.o slasd6.o slasd7.o slasd8.o slasda.o slasdq.o slasdt.o slaset.o slasq1.o slasq2.o slasq3.o slasq4.o slasq5.o slasq6.o slasr.o slasrt.o slassq.o slasv2.o slaswp.o slasy2.o sla_syamv.o slasyf.o slasyf_rook.o sla_syrcond.o sla_syrfsx_extended.o sla_syrpvgrw.o slatbs.o slatdf.o slatps.o slatrd.o slatrs.o slatrz.o slatzm.o slauu2.o slauum.o sla_wwaddw.o slazq3.o slazq4.o sopgtr.o sopmtr.o sorbdb1.o sorbdb2.o sorbdb3.o sorbdb4.o sorbdb5.o sorbdb6.o sorbdb.o sorcsd2by1.o sorcsd.o sorg2l.o sorg2r.o sorgbr.o sorghr.o sorgl2.o sorglq.o sorgql.o sorgqr.o sorgr2.o sorgrq.o sorgtr.o sorm2l.o sorm2r.o sormbr.o sormhr.o sorml2.o sormlq.o sormql.o sormqr.o sormr2.o sormr3.o sormrq.o sormrz.o sormtr.o spbcon.o spbequ.o spbrfs.o spbstf.o spbsv.o spbsvx.o spbtf2.o spbtrf.o spbtrs.o spftrf.o spftri.o spftrs.o spocon.o spoequb.o spoequ.o sporfs.o sporfsx.o sposv.o sposvx.o sposvxx.o spotf2.o spotrf.o spotri.o spotrs.o sppcon.o sppequ.o spprfs.o sppsv.o sppsvx.o spptrf.o spptri.o spptrs.o spstf2.o spstrf.o sptcon.o spteqr.o sptrfs.o sptsv.o sptsvx.o spttrf.o spttrs.o sptts2.o srscl.o ssbevd.o ssbev.o ssbevx.o ssbgst.o ssbgvd.o ssbgv.o ssbgvx.o ssbtrd.o ssfrk.o sspcon.o sspevd.o sspev.o sspevx.o sspgst.o sspgvd.o sspgv.o sspgvx.o ssprfs.o sspsv.o sspsvx.o ssptrd.o ssptrf.o ssptri.o ssptrs.o sstebz.o sstedc.o sstegr.o sstein.o sstemr.o ssteqr.o ssterf.o sstevd.o sstev.o sstevr.o sstevx.o ssycon.o ssycon_rook.o ssyconv.o ssyequb.o ssyevd.o ssyev.o ssyevr.o ssyevx.o ssygs2.o ssygst.o ssygvd.o ssygv.o ssygvx.o ssyrfs.o ssyrfsx.o ssysv.o ssysv_rook.o ssysvx.o ssysvxx.o ssyswapr.o ssytd2.o ssytf2.o ssytf2_rook.o ssytrd.o ssytrf.o ssytrf_rook.o ssytri2.o ssytri2x.o ssytri.o ssytri_rook.o ssytrs2.o ssytrs.o ssytrs_rook.o stbcon.o stbrfs.o stbtrs.o stfsm.o stftri.o stfttp.o stfttr.o stgevc.o stgex2.o stgexc.o stgsen.o stgsja.o stgsna.o stgsy2.o stgsyl.o stpcon.o stpmqrt.o stpqrt2.o stpqrt.o stprfb.o stprfs.o stptri.o stptrs.o stpttf.o stpttr.o strcon.o strevc.o strexc.o strrfs.o strsen.o strsna.o strsyl.o strti2.o strtri.o strtrs.o strttf.o strttp.o stzrqf.o stzrzf.o zbbcsd.o zbdsqr.o zcgesv.o zcposv.o zdrscl.o zgbbrd.o zgbcon.o zgbequb.o zgbequ.o zgbrfs.o zgbrfsx.o zgbsv.o zgbsvx.o zgbsvxx.o zgbtf2.o zgbtrf.o zgbtrs.o zgebak.o zgebal.o zgebd2.o zgebrd.o zgecon.o zgeequb.o zgeequ.o zgees.o zgeesx.o zgeev.o zgeevx.o zgegs.o zgegv.o zgehd2.o zgehrd.o zgelq2.o zgelqf.o zgelsd.o zgels.o zgelss.o zgelsx.o zgelsy.o zgemqrt.o zgeql2.o zgeqlf.o zgeqp3.o zgeqpf.o zgeqr2.o zgeqr2p.o zgeqrf.o zgeqrfp.o zgeqrt2.o zgeqrt3.o zgeqrt.o zgerfs.o zgerfsx.o zgerq2.o zgerqf.o zgesc2.o zgesdd.o zgesvd.o zgesv.o zgesvx.o zgesvxx.o zgetc2.o zgetf2.o zgetrf.o zgetri.o zgetrs.o zggbak.o zggbal.o zgges.o zggesx.o zggev.o zggevx.o zggglm.o zgghrd.o zgglse.o zggqrf.o zggrqf.o zggsvd.o zggsvp.o zgtcon.o zgtrfs.o zgtsv.o zgtsvx.o zgttrf.o zgttrs.o zgtts2.o zhbevd.o zhbev.o zhbevx.o zhbgst.o zhbgvd.o zhbgv.o zhbgvx.o zhbtrd.o zhecon.o zhecon_rook.o zheequb.o zheevd.o zheev.o zheevr.o zheevx.o zhegs2.o zhegst.o zhegvd.o zhegv.o zhegvx.o zherfs.o zherfsx.o zhesv.o zhesv_rook.o zhesvx.o zhesvxx.o zheswapr.o zhetd2.o zhetf2.o zhetf2_rook.o zhetrd.o zhetrf.o zhetrf_rook.o zhetri2.o zhetri2x.o zhetri.o zhetri_rook.o zhetrs2.o zhetrs.o zhetrs_rook.o zhfrk.o zhgeqz.o zhpcon.o zhpevd.o zhpev.o zhpevx.o zhpgst.o zhpgvd.o zhpgv.o zhpgvx.o zhprfs.o zhpsv.o zhpsvx.o zhptrd.o zhptrf.o zhptri.o zhptrs.o zhsein.o zhseqr.o zlabrd.o zlacgv.o zlacn2.o zlacon.o zlacp2.o zlacpy.o zlacrm.o zlacrt.o zladiv.o zlaed0.o zlaed7.o zlaed8.o zlaein.o zlaesy.o zlaev2.o zlag2c.o zla_gbamv.o zla_gbrcond_c.o zla_gbrcond_x.o zla_gbrfsx_extended.o zla_gbrpvgrw.o zla_geamv.o zla_gercond_c.o zla_gercond_x.o zla_gerfsx_extended.o zla_gerpvgrw.o zlags2.o zlagtm.o zla_heamv.o zlahef.o zlahef_rook.o zla_hercond_c.o zla_hercond_x.o zla_herfsx_extended.o zla_herpvgrw.o zlahqr.o zlahr2.o zlahrd.o zlaic1.o zla_lin_berr.o zlals0.o zlalsa.o zlalsd.o zlangb.o zlange.o zlangt.o zlanhb.o zlanhe.o zlanhf.o zlanhp.o zlanhs.o zlanht.o zlansb.o zlansp.o zlansy.o zlantb.o zlantp.o zlantr.o zlapll.o zlapmr.o zlapmt.o zla_porcond_c.o zla_porcond_x.o zla_porfsx_extended.o zla_porpvgrw.o zlaqgb.o zlaqge.o zlaqhb.o zlaqhe.o zlaqhp.o zlaqp2.o zlaqps.o zlaqr0.o zlaqr1.o zlaqr2.o zlaqr3.o zlaqr4.o zlaqr5.o zlaqsb.o zlaqsp.o zlaqsy.o zlar1v.o zlar2v.o zlarcm.o zlarfb.o zlarf.o zlarfg.o zlarfgp.o zlarft.o zlarfx.o zlargv.o zlarnv.o zlarrv.o zlarscl2.o zlartg.o zlartv.o zlarzb.o zlarz.o zlarzt.o zlascl2.o zlascl.o zlaset.o zlasr.o zlassq.o zlaswp.o zla_syamv.o zlasyf.o zlasyf_rook.o zla_syrcond_c.o zla_syrcond_x.o zla_syrfsx_extended.o zla_syrpvgrw.o zlat2c.o zlatbs.o zlatdf.o zlatps.o zlatrd.o zlatrs.o zlatrz.o zlatzm.o zlauu2.o zlauum.o zla_wwaddw.o zpbcon.o zpbequ.o zpbrfs.o zpbstf.o zpbsv.o zpbsvx.o zpbtf2.o zpbtrf.o zpbtrs.o zpftrf.o zpftri.o zpftrs.o zpocon.o zpoequb.o zpoequ.o zporfs.o zporfsx.o zposv.o zposvx.o zposvxx.o zpotf2.o zpotrf.o zpotri.o zpotrs.o zppcon.o zppequ.o zpprfs.o zppsv.o zppsvx.o zpptrf.o zpptri.o zpptrs.o zpstf2.o zpstrf.o zptcon.o zpteqr.o zptrfs.o zptsv.o zptsvx.o zpttrf.o zpttrs.o zptts2.o zrot.o zspcon.o zspmv.o zspr.o zsprfs.o zspsv.o zspsvx.o zsptrf.o zsptri.o zsptrs.o zstedc.o zstegr.o zstein.o zstemr.o zsteqr.o zsycon.o zsycon_rook.o zsyconv.o zsyequb.o zsymv.o zsyr.o zsyrfs.o zsyrfsx.o zsysv.o zsysv_rook.o zsysvx.o zsysvxx.o zsyswapr.o zsytf2.o zsytf2_rook.o zsytrf.o zsytrf_rook.o zsytri2.o zsytri2x.o zsytri.o zsytri_rook.o zsytrs2.o zsytrs.o zsytrs_rook.o ztbcon.o ztbrfs.o ztbtrs.o ztfsm.o ztftri.o ztfttp.o ztfttr.o ztgevc.o ztgex2.o ztgexc.o ztgsen.o ztgsja.o ztgsna.o ztgsy2.o ztgsyl.o ztpcon.o ztpmqrt.o ztpqrt2.o ztpqrt.o ztprfb.o ztprfs.o ztptri.o ztptrs.o ztpttf.o ztpttr.o ztrcon.o ztrevc.o ztrexc.o ztrrfs.o ztrsen.o ztrsna.o ztrsyl.o ztrti2.o ztrtri.o ztrtrs.o ztrttf.o ztrttp.o ztzrqf.o ztzrzf.o zunbdb1.o zunbdb2.o zunbdb3.o zunbdb4.o zunbdb5.o zunbdb6.o zunbdb.o zuncsd2by1.o zuncsd.o zung2l.o zung2r.o zungbr.o zunghr.o zungl2.o zunglq.o zungql.o zungqr.o zungr2.o zungrq.o zungtr.o zunm2l.o zunm2r.o zunmbr.o zunmhr.o zunml2.o zunmlq.o zunmql.o zunmqr.o zunmr2.o zunmr3.o zunmrq.o zunmrz.o zunmtr.o zupgtr.o zupmtr.o make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2/lapack' cd lapack-extra; make lib FC="/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90" FOPTFLAGS="-fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O " FNOOPT="-O0 -fPIC " AR="/usr/bin/ar" AR_FLAGS="cr" RM="/bin/rm -f" LIBNAME="libflapack.a" make[1]: Entering directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2/lapack-extra' /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -O0 -fPIC slamch.f dlamch.f /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -c -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O ilaver.f /usr/bin/ar cr ../libflapack.a slamch.o dlamch.o ilaver.o /bin/rm -f slamch.o dlamch.o ilaver.o make[1]: Leaving directory `/home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2/lapack-extra' /usr/bin/ranlib libflapack.a Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2 && mv -f libfblas.a libflapack.a /home/lucasogura/petsc/arch-linux2-c-opt/lib Executing: cd /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2 && cp -f tmpmakefile /home/lucasogura/petsc/arch-linux2-c-opt/conf/fblaslapack Not checking for library in Download FBLASLAPACK: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/lucasogura/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download FBLASLAPACK: ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/include', '/home/lucasogura/petsc/arch-linux2-c-opt/include'] ================================================================================ TEST checkSharedLibrary from config.packages.fblaslapack(/home/lucasogura/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/home/lucasogura/petsc/config/BuildSystem/config/packages/BlasLapack.py:318) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:318) ================================================================================ Checking for a functional BLAS and LAPACK in fblaslapack ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/lucasogura/petsc/config/BuildSystem/config/packages/BlasLapack.py:99) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:99) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libfblas.a'] ['-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lfblas -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_LIBFBLAS" to "1" Popping language C Checking for functions [dgetrs_] in library ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libflapack.a'] ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libfblas.a', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lfblas -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions [dgeev_] in library ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libflapack.a'] ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libfblas.a', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lfblas -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_LIBFLAPACK" to "1" Popping language C Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST check64BitBLASIndices from config.packages.BlasLapack(/home/lucasogura/petsc/config/BuildSystem/config/packages/BlasLapack.py:437) TESTING: check64BitBLASIndices from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:437) Check for and use 64bit integer blas ================================================================================ TEST checkESSL from config.packages.BlasLapack(/home/lucasogura/petsc/config/BuildSystem/config/packages/BlasLapack.py:377) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:377) Check for the IBM ESSL library Checking for functions [iessl] in library ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libflapack.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `iessl' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/home/lucasogura/petsc/config/BuildSystem/config/packages/BlasLapack.py:389) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:389) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libflapack.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `ipessl' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMKL from config.packages.BlasLapack(/home/lucasogura/petsc/config/BuildSystem/config/packages/BlasLapack.py:383) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:383) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libflapack.a'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `mkl_set_num_threads' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/home/lucasogura/petsc/config/BuildSystem/config/packages/BlasLapack.py:402) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:402) Check for missing LAPACK routines Checking for functions [dtrsen_ dgerfs_ dgges_ dtgsen_ dgesvd_ dgetrf_ dgetrs_ dgeev_ dgelss_ dsyev_ dsyevx_ dsygv_ dsygvx_ dpotrf_ dpotrs_ dstebz_ dpttrf_ dpttrs_ dstein_ dorgqr_ dgeqrf_ dgesv_ dhseqr_ dsteqr_] in library ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libflapack.a'] ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libfblas.a', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dgesvd_(); static void _check_dgesvd_() { dgesvd_(); } char dgetrf_(); static void _check_dgetrf_() { dgetrf_(); } char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } char dgeev_(); static void _check_dgeev_() { dgeev_(); } char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dsyev_(); static void _check_dsyev_() { dsyev_(); } char dsyevx_(); static void _check_dsyevx_() { dsyevx_(); } char dsygv_(); static void _check_dsygv_() { dsygv_(); } char dsygvx_(); static void _check_dsygvx_() { dsygvx_(); } char dpotrf_(); static void _check_dpotrf_() { dpotrf_(); } char dpotrs_(); static void _check_dpotrs_() { dpotrs_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dpttrf_(); static void _check_dpttrf_() { dpttrf_(); } char dpttrs_(); static void _check_dpttrs_() { dpttrs_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dgeqrf_(); static void _check_dgeqrf_() { dgeqrf_(); } char dgesv_(); static void _check_dgesv_() { dgesv_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } int main() { _check_dtrsen_(); _check_dgerfs_(); _check_dgges_(); _check_dtgsen_(); _check_dgesvd_(); _check_dgetrf_(); _check_dgetrs_(); _check_dgeev_(); _check_dgelss_(); _check_dsyev_(); _check_dsyevx_(); _check_dsygv_(); _check_dsygvx_(); _check_dpotrf_(); _check_dpotrs_(); _check_dstebz_(); _check_dpttrf_(); _check_dpttrs_(); _check_dstein_(); _check_dorgqr_(); _check_dgeqrf_(); _check_dgesv_(); _check_dhseqr_(); _check_dsteqr_();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lfblas -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST checklsame from config.packages.BlasLapack(/home/lucasogura/petsc/config/BuildSystem/config/packages/BlasLapack.py:415) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:415) Do the BLAS/LAPACK libraries have a valid lsame() function with correction binding. Lion and xcode 4.2 do not Checking for functions [lsame_] in library ['/home/lucasogura/petsc/arch-linux2-c-opt/lib/libflapack.a', '/home/lucasogura/petsc/arch-linux2-c-opt/lib/libfblas.a', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lfblas -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_LIBFLAPACK" to "1" Defined "HAVE_LIBFBLAS" to "1" Defined "HAVE_LIBMPICHF90" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBQUADMATH" to "1" Defined "HAVE_LIBM" to "1" Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.setCompilers/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.setCompilers/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -lfblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuiteSparse(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.SuiteSparse(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.oski(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.oski(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.ml(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mkl_pardiso(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.mkl_pardiso(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.spai(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pARMS(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.pARMS(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PaStiX(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.PaStiX(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.scalapack(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.scalapack(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hypre(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.elemental(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.elemental(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.clique(/home/lucasogura/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.clique(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.utilities.Regression(/home/lucasogura/petsc/config/PETSc/utilities/Regression.py:33) TESTING: configureRegression from PETSc.utilities.Regression(config/PETSc/utilities/Regression.py:33) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to "C Fortran OPENCL VIENNACL Cxx F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex" ================================================================================ TEST configureCPURelax from config.atomics(/home/lucasogura/petsc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-8RbPfA/config.atomics Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.atomics/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/home/lucasogura/petsc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.atomics/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.atomics/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.atomics/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:754) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:754) All intermediate test results are stored in /tmp/petsc-8RbPfA/PETSc.Configure Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:4:15: error: ‘RTLD_DEFAULT’ undeclared here (not in a function) void *ptr = RTLD_DEFAULT; ^ Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:604) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:604) Sees if there are any prefetch functions supported Executing: uname -s stdout: Linux Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" Popping language C ================================================================================ TEST configureUnused from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:665) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:665) Sees if __attribute((unused)) is supported Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:7:5: warning: unused variable ‘j’ [-Wunused-variable] int j = myfunc(&i); ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "UNUSED" to "__attribute((unused))" Popping language C ================================================================================ TEST configureDeprecated from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:683) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:683) Check if __attribute((deprecated)) is supported Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:3:38: warning: ‘myfunc’ defined but not used [-Wunused-function] __attribute((deprecated)) static int myfunc(void) { return 1;} ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED(why)" to "__attribute((deprecated))" Popping language C ================================================================================ TEST configureIsatty from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:677) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:677) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ================================================================================ TEST configureExpect from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:703) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:703) Sees if the __builtin_expect directive is supported Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" Popping language C ================================================================================ TEST configureFunctionName from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:710) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:710) Sees if the compiler supports __func__ or a variant. Falls back on __FUNCT__ which PETSc source defines, but most users do not, thus stack traces through user code are better when the compiler's variant is used. Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language C Defined "FUNCTION_NAME_C" to "__func__" Pushing language Cxx Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /tmp/petsc-8RbPfA/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language CXX Popping language CXX Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Popping language Cxx Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:732) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:732) Determine what to use for uintptr_t Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:6:18: warning: unused variable ‘i’ [-Wunused-variable] int x; uintptr_t i = (uintptr_t)&x;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" Popping language C ================================================================================ TEST configureSolaris from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:759) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:759) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:772) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:772) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:778) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:778) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetComputerName] in library ['kernel32'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['advapi32'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['User32.lib'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['user32'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for type: int32_t Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.types/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/config.types/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:6:7: warning: unused variable ‘u’ [-Wunused-variable] uid_t u; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:8:5: warning: unused variable ‘a’ [-Wunused-variable] int a=R_OK; ^ Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:3:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:3:21: fatal error: Windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/home/lucasogura/petsc"" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:848) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:848) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Linux ================================================================================ TEST configureDefaultArch from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:864) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:864) ================================================================================ TEST configureScript from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:881) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:881) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:918) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:918) Setup the directories for installation Defined make rule "shared_install" with dependencies "" and code ['-@echo "Now to check if the libraries are working do:"', '-@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:932) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:932) ================================================================================ TEST configureFortranFlush from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:937) TESTING: configureFortranFlush from PETSc.Configure(config/PETSc/Configure.py:937) Checking for functions [flush_] in library [''] ['-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush_(); static void _check_flush_() { flush_(); } int main() { _check_flush_();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `flush_' collect2: error: ld returned 1 exit status Popping language C Checking for functions [flush__] in library [''] ['-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-L/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/config.libraries/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush__(); static void _check_flush__() { flush__(); } int main() { _check_flush__();; return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/config.libraries/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-8RbPfA/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `flush__' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST configureAtoll from PETSc.Configure(/home/lucasogura/petsc/config/PETSc/Configure.py:660) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:660) Checks if atoll exists Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c:7:6: warning: unused variable ‘v’ [-Wunused-variable] long v = atoll("25"); ^ Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl Defined "HAVE_ATOLL" to "1" Defined make rule "remote" with dependencies "" and code [] Defined make rule "remoteclean" with dependencies "" and code [] Pushing language C Defined make macro "CC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O " Popping language C Pushing language Cxx Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC " Popping language Cxx Defined make macro "CPP_FLAGS" to " " Pushing language C Defined make macro "PCC" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc" Defined make macro "PCC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O" Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -V Defined make macro "FC_LINKER" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O" Popping language FC Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Pushing language C Defined make macro "SL_LINKER" to "/home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Popping language C Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Executing: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -c -o /tmp/petsc-8RbPfA/PETSc.Configure/conftest.o -I/tmp/petsc-8RbPfA/config.headers -I/tmp/petsc-8RbPfA/PETSc.utilities.cacheDetails -I/tmp/petsc-8RbPfA/PETSc.utilities.featureTestMacros -I/tmp/petsc-8RbPfA/config.compilers -I/tmp/petsc-8RbPfA/PETSc.utilities.missing -I/tmp/petsc-8RbPfA/config.functions -I/tmp/petsc-8RbPfA/config.packages.MPI -I/tmp/petsc-8RbPfA/PETSc.packages.valgrind -I/tmp/petsc-8RbPfA/PETSc.utilities.scalarTypes -I/tmp/petsc-8RbPfA/config.setCompilers -I/tmp/petsc-8RbPfA/PETSc.packages.pthread -I/tmp/petsc-8RbPfA/config.atomics -I/tmp/petsc-8RbPfA/config.libraries -I/tmp/petsc-8RbPfA/config.types -I/tmp/petsc-8RbPfA/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /tmp/petsc-8RbPfA/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -lfblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_FBLASLAPACK" to "1" Defined make macro "FBLASLAPACK_LIB" to "" Defined make macro "FBLASLAPACK_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "-lpthread" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_C2HTML" to "1" Defined make macro "C2HTML_LIB" to "" Defined make macro "C2HTML_INCLUDE" to "" Defined "HAVE_VALGRIND" to "1" Defined make macro "VALGRIND_LIB" to "" Defined make macro "VALGRIND_INCLUDE" to "" Defined "HAVE_VIENNACL" to "1" Defined make macro "VIENNACL_LIB" to "" Defined make macro "VIENNACL_INCLUDE" to "-I/home/lucasogura/petsc/arch-linux2-c-opt/include" Defined "HAVE_OPENCL" to "1" Defined make macro "OPENCL_LIB" to "-Wl,-rpath,/opt/AMDAPP/lib/x86_64 -L/opt/AMDAPP/lib/x86_64 -lOpenCL" Defined make macro "OPENCL_INCLUDE" to "-I/opt/AMDAPP/include" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/home/lucasogura/petsc/arch-linux2-c-opt/include" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lpetsc -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -lfblas -lpthread -Wl,-rpath,/opt/AMDAPP/lib/x86_64 -L/opt/AMDAPP/lib/x86_64 -lOpenCL -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl " Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -lfblas -lpthread -Wl,-rpath,/opt/AMDAPP/lib/x86_64 -L/opt/AMDAPP/lib/x86_64 -lOpenCL -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl " Defined make macro "PETSC_CC_INCLUDES" to "-I/home/lucasogura/petsc/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/opt/AMDAPP/include" Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "PETSC_FC_INCLUDES" to "-I/home/lucasogura/petsc/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/opt/AMDAPP/include" Defined make macro "DESTDIR" to "/home/lucasogura/petsc/arch-linux2-c-opt" Defined "LIB_DIR" to ""/home/lucasogura/petsc/arch-linux2-c-opt/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--download-fblaslapack=1 --download-mpich --download-viennacl --with-opencl-include=/opt/AMDAPP/include/ --with-opencl-lib=/opt/AMDAPP/lib/x86_64/libOpenCL.so --with-debugging=0" Pushing language C Popping language C Pushing language FC Popping language FC Pushing language C Popping language C Pushing language FC Popping language FC Skipping cmakeboot due to old python version: sys.version_info(major=2, minor=7, micro=6, releaselevel='final', serial=0) Pushing language C Popping language C Pushing language FC Popping language FC ================================================================================ ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.petsc4py(/home/lucasogura/petsc/config/PETSc/packages/petsc4py.py:65) TESTING: alternateConfigureLibrary from PETSc.packages.petsc4py(config/PETSc/packages/petsc4py.py:65) Defined make rule "petsc4py" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpi4py(/home/lucasogura/petsc/config/PETSc/packages/mpi4py.py:49) TESTING: alternateConfigureLibrary from PETSc.packages.mpi4py(config/PETSc/packages/mpi4py.py:49) Defined make rule "mpi4py" with dependencies "" and code [] Defined make rule "mpi4py_noinstall" with dependencies "" and code [] **** arch-linux2-c-opt/conf/petscvariables **** MPICXX_SHOW = g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichcxx -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread C_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D MPICC_SHOW = gcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP FC_DEPFLAGS = -MMD -MP MPIFC_SHOW = gfortran -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpichf90 -Wl,-rpath -Wl,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lmpich -lopa -lmpl -lrt -lpthread FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -J PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc CC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O SOWING_LIB = PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc FC_FLAGS = -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O BLASLAPACK_LIB = -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -lfblas PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} SHLIBS = libpetsc VALGRIND_INCLUDE = OPENCL_INCLUDE = -I/opt/AMDAPP/include MPI_LIB = C2HTML_LIB = SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} CC_SUFFIX = o PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} C2HTML_INCLUDE = CONFIGURE_OPTIONS = --download-fblaslapack=1 --download-mpich --download-viennacl --with-opencl-include=/opt/AMDAPP/include/ --with-opencl-lib=/opt/AMDAPP/lib/x86_64/libOpenCL.so --with-debugging=0 PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PTHREAD_LIB = -lpthread PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/home/lucasogura/petsc/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/opt/AMDAPP/include CPP_FLAGS = PETSC_TAO_LIB_BASIC = -lpetsc PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = OPENCL_LIB = -Wl,-rpath,/opt/AMDAPP/lib/x86_64 -L/opt/AMDAPP/lib/x86_64 -lOpenCL FC_LINKER = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -lfblas -lpthread -Wl,-rpath,/opt/AMDAPP/lib/x86_64 -L/opt/AMDAPP/lib/x86_64 -lOpenCL -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC PCC_LINKER_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES = -I/home/lucasogura/petsc/include -I/home/lucasogura/petsc/arch-linux2-c-opt/include -I/opt/AMDAPP/include PCC_LINKER = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O VALGRIND_LIB = PTHREAD_INCLUDE = PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} VIENNACL_LIB = FBLASLAPACK_INCLUDE = BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = FBLASLAPACK_LIB = SL_LINKER_SUFFIX = so PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} DESTDIR = /home/lucasogura/petsc/arch-linux2-c-opt FC_MODULE_FLAG = -I PETSC_WITH_EXTERNAL_LIB = -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lpetsc -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -lfblas -lpthread -Wl,-rpath,/opt/AMDAPP/lib/x86_64 -L/opt/AMDAPP/lib/x86_64 -lOpenCL -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl VIENNACL_INCLUDE = -I/home/lucasogura/petsc/arch-linux2-c-opt/include SOWING_INCLUDE = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = -I/home/lucasogura/petsc/arch-linux2-c-opt/include FC_SUFFIX = o PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SLFLAG = -Wl,-rpath, CC = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc CXX = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx FC = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 CXXCPP = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -E FC_LINKER_SLFLAG = -Wl,-rpath, CPP = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -E AR_LIB_SUFFIX = a LD_SHARED = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc AR = /usr/bin/ar DIR = /home/lucasogura/petsc OMAKE = /usr/bin/make --no-print-directory MAKE_IS_GNUMAKE = 1 MAKE = /usr/bin/make MAKE_NP = 4 OMAKE_PRINTDIR = /usr/bin/make --print-directory SHELL = /bin/sh GREP = /bin/grep MV = /bin/mv PYTHON = /usr/bin/python MKDIR = /bin/mkdir -p SEDINPLACE = /bin/sed -i SED = /bin/sed DIFF = /usr/bin/diff -w GZIP = /bin/gzip RM = /bin/rm -f CP = /bin/cp GIT = git HG = hg MPIEXEC = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpiexec SL_LINKER_FUNCTION = -shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) SONAME_FUNCTION = $(1).so.$(2) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true TEST_RUNS = C Fortran OPENCL VIENNACL Cxx F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex LEX = lex FLEX = flex C2HTML = /home/lucasogura/petsc/arch-linux2-c-opt/bin/c2html BIB2HTML = /home/lucasogura/petsc/arch-linux2-c-opt/bin/bib2html MAPNAMES = /home/lucasogura/petsc/arch-linux2-c-opt/bin/mapnames BFORT = /home/lucasogura/petsc/arch-linux2-c-opt/bin/bfort DOCTEXT = /home/lucasogura/petsc/arch-linux2-c-opt/bin/doctext **** arch-linux2-c-opt/conf/petscrules **** shared_install: -@echo "Now to check if the libraries are working do:" -@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test" -@echo "=========================================" remoteclean: remote: libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_linux .F.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.o .f90.o .f95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $< .f.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o .F95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $< mpi4py_noinstall: mpi4py: petsc4py: **** arch-linux2-c-opt/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_UINTPTR_T #define PETSC_UINTPTR_T uintptr_t #endif #ifndef PETSC_HAVE_PTHREAD #define PETSC_HAVE_PTHREAD 1 #endif #ifndef PETSC_DEPRECATED #define PETSC_DEPRECATED(why) __attribute((deprecated)) #endif #ifndef PETSC_HAVE_OPENCL #define PETSC_HAVE_OPENCL 1 #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_SO_REUSEADDR #define PETSC_HAVE_SO_REUSEADDR 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_PREFETCH_HINT_T2 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #endif #ifndef PETSC_PREFETCH_HINT_T0 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #endif #ifndef PETSC_PREFETCH_HINT_T1 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_DIR #define PETSC_DIR "/home/lucasogura/petsc" #endif #ifndef PETSC_LIB_DIR #define PETSC_LIB_DIR "/home/lucasogura/petsc/arch-linux2-c-opt/lib" #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_USE_ISATTY #define PETSC_USE_ISATTY 1 #endif #ifndef PETSC_HAVE_SOWING #define PETSC_HAVE_SOWING 1 #endif #ifndef PETSC_SLSUFFIX #define PETSC_SLSUFFIX "so" #endif #ifndef PETSC_FUNCTION_NAME_CXX #define PETSC_FUNCTION_NAME_CXX __func__ #endif #ifndef PETSC_HAVE_VIENNACL #define PETSC_HAVE_VIENNACL 1 #endif #ifndef PETSC_HAVE_FBLASLAPACK #define PETSC_HAVE_FBLASLAPACK 1 #endif #ifndef PETSC_HAVE_ATOLL #define PETSC_HAVE_ATOLL 1 #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_UNUSED #define PETSC_UNUSED __attribute((unused)) #endif #ifndef PETSC_FUNCTION_NAME_C #define PETSC_FUNCTION_NAME_C __func__ #endif #ifndef PETSC_HAVE_C2HTML #define PETSC_HAVE_C2HTML 1 #endif #ifndef PETSC_HAVE_VALGRIND #define PETSC_HAVE_VALGRIND 1 #endif #ifndef PETSC_USE_SINGLE_LIBRARY #define PETSC_USE_SINGLE_LIBRARY 1 #endif #ifndef PETSC_HAVE_BUILTIN_EXPECT #define PETSC_HAVE_BUILTIN_EXPECT 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC_HAVE_XMMINTRIN_H #define PETSC_HAVE_XMMINTRIN_H 1 #endif #ifndef PETSC_PREFETCH_HINT_NTA #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #endif #ifndef PETSC_Prefetch #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBZ #define PETSC_HAVE_LIBZ 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBMPICHF90 #define PETSC_HAVE_LIBMPICHF90 1 #endif #ifndef PETSC_HAVE_LIBOPENCL #define PETSC_HAVE_LIBOPENCL 1 #endif #ifndef PETSC_HAVE_LIBFBLAS #define PETSC_HAVE_LIBFBLAS 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LIBFLAPACK #define PETSC_HAVE_LIBFLAPACK 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBPTHREAD #define PETSC_HAVE_LIBPTHREAD 1 #endif #ifndef PETSC_HAVE_LIBQUADMATH #define PETSC_HAVE_LIBQUADMATH 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_HAVE_LIBGFORTRAN #define PETSC_HAVE_LIBGFORTRAN 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-linux2-c-opt" #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_IALLREDUCE #define PETSC_HAVE_MPI_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_CONTIGUOUS #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #endif #ifndef PETSC_HAVE_MPI_INT64_T #define PETSC_HAVE_MPI_INT64_T 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPICH_CH3_SOCK #define PETSC_HAVE_MPICH_CH3_SOCK 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_IBARRIER #define PETSC_HAVE_MPI_IBARRIER 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_BLASLAPACK_UNDERSCORE #define PETSC_BLASLAPACK_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_SIZE #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #endif #ifndef PETSC_USE_MALLOC_COALESCED #define PETSC_USE_MALLOC_COALESCED 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_HAVE_ISNORMAL #define PETSC_HAVE_ISNORMAL 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2014-06-28 12:39:08 -0500" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "v3.4.4-4963-g821251a" #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_HAVE_SCHED_CPU_SET_T #define PETSC_HAVE_SCHED_CPU_SET_T 1 #endif #ifndef PETSC_HAVE_PTHREAD_BARRIER_T #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** arch-linux2-c-opt/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- Framework: Directory creation : Created the external packages directory: /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages File creation : Created makefile configure header arch-linux2-c-opt/conf/petscvariables File creation : Created makefile configure header arch-linux2-c-opt/conf/petscvariables File creation : Created configure header arch-linux2-c-opt/include/petscconf.h File creation : Created C specific configure header arch-linux2-c-opt/include/petscfix.h MPI: Download : Downloaded MPI into /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/mpich-3.1 Install : Installed MPICH into /home/lucasogura/petsc/arch-linux2-c-opt SOWING: Download : Downloaded sowing into /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/sowing-1.1.16g Sowing: Install : Installed Sowing into /home/lucasogura/petsc/arch-linux2-c-opt PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-linux2-c-opt in conf/petscvariables File creation : Created arch-linux2-c-opt/conf/reconfigure-arch-linux2-c-opt.py for automatic reconfiguration VIENNACL: Download : Downloaded viennacl into /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/ViennaCL-1.5.2 C2HTML: Download : Downloaded c2html into /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/c2html-0.9.4 Install : Installed c2html into /home/lucasogura/petsc/arch-linux2-c-opt FBLASLAPACK: Download : Downloaded fblaslapack into /home/lucasogura/petsc/arch-linux2-c-opt/externalpackages/fblaslapack-3.4.2 Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Compilers: C Compiler: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O C++ Compiler: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC Fortran Compiler: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpif90 -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O Linkers: Shared linker: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O Dynamic linker: /home/lucasogura/petsc/arch-linux2-c-opt/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O make: MPI: Includes: -I/home/lucasogura/petsc/arch-linux2-c-opt/include BLAS/LAPACK: -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lflapack -Wl,-rpath,/home/lucasogura/petsc/arch-linux2-c-opt/lib -L/home/lucasogura/petsc/arch-linux2-c-opt/lib -lfblas fblaslapack: pthread: Library: -lpthread Arch: c2html: valgrind: viennacl: Includes: -I/home/lucasogura/petsc/arch-linux2-c-opt/include opencl: Includes: -I/opt/AMDAPP/include Library: -Wl,-rpath,/opt/AMDAPP/lib/x86_64 -L/opt/AMDAPP/lib/x86_64 -lOpenCL sowing: PETSc: PETSC_ARCH: arch-linux2-c-opt PETSC_DIR: /home/lucasogura/petsc Clanguage: C shared libraries: enabled Scalar type: real Precision: double Memory alignment: 16 xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with (gnumake build): make PETSC_DIR=/home/lucasogura/petsc PETSC_ARCH=arch-linux2-c-opt all xxx=========================================================================xxx ================================================================================ Finishing Configure Run at Sat Jun 28 17:06:18 2014 ================================================================================