<div dir="ltr"><div class="gmail_extra"><div class="gmail_quote">On Tue, Apr 1, 2014 at 9:53 AM, Pierpaolo Minelli <span dir="ltr"><<a href="mailto:pierpaolo.minelli@ba.imip.cnr.it" target="_blank">pierpaolo.minelli@ba.imip.cnr.it</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">I am a fortran programmer so, i don’t know how to check this. <div>I have the latest suite of Intel Compiler. (Intel Cluster Studio XE 2013).</div>
<div>Which type of check can i do to see if it is working c++ compiler?</div><div>In the configure.log, it seems that some sources are compiled while this no, or i have seen wrong?</div></div></blockquote><div><br></div><div>
It looks like these MPI compilers never worked. If you are running in parallel, just use the gcc</div><div>compilers that come with Cygwin and --download-mpich. Otherwise, use the regular Intel compilers</div><div>and --with-mpi=0.</div>
<div><br></div><div>In general, Intel compilers are horribly fragile. If you really want the Intel MPI, I suggest you fill out</div><div>a help ticket with them using the error message from below.</div><div><br></div><div>
Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word"><div>Pierpaolo</div><div><br></div><div><br><div><div>Il giorno 01/apr/2014, alle ore 16:29, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>> ha scritto:</div>
<br><blockquote type="cite"><div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px">
<div dir="ltr"><div class="gmail_extra"><div class="gmail_quote">On Tue, Apr 1, 2014 at 9:20 AM, Pierpaolo Minelli<span> </span><span dir="ltr"><<a href="mailto:pierpaolo.minelli@ba.imip.cnr.it" target="_blank">pierpaolo.minelli@ba.imip.cnr.it</a>></span><span> </span>wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="word-wrap:break-word">Hi,<div><br></div><div>Thanks for your reply. I tried with --with-cxxlib-autodetect=0 but i obtain the same error.</div>
<div>In attachment you can find configure.log for both cases:</div><div>configure.log is my original log (without using --with-cxxlib-autodetect=0)</div><div>configure.log.new is new log produced when i try to use option --with-cxxlib-autodetect=0</div>
</div></blockquote><div><br></div><div>This appears to be a problem with your MPI:</div><div><br></div><div><div>ld: MPIR_Thread: TLS definition in /opt/intel/impi/<a href="http://4.1.3.048/intel64/lib/libmpi_mt.so" target="_blank">4.1.3.048/intel64/lib/libmpi_mt.so</a><span> </span>section .tbss mismatches non-TLS definition in /opt/intel/impi/<a href="http://4.1.3.048/intel64/lib/libmpi.so" target="_blank">4.1.3.048/intel64/lib/libmpi.so</a><span> </span>section .bss</div>
<div>/opt/intel/impi/<a href="http://4.1.3.048/intel64/lib/libmpi.so" target="_blank">4.1.3.048/intel64/lib/libmpi.so</a>: could not read symbols: Bad value</div><div> Popping language Cxx</div><div> compilers: Cannot compile/link Cxx with mpiicpc.</div>
</div><div><br></div><div>Can you run anything with it?</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div style="word-wrap:break-word"><div>Thanks,</div><div><br></div><div>Pierpaolo</div><div><br></div><div></div></div><br><div style="word-wrap:break-word"><div></div></div><br><div style="word-wrap:break-word"><div></div>
<div><br></div><div><div><div>Il giorno 01/apr/2014, alle ore 15:02, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>> ha scritto:</div><br><blockquote type="cite"><div dir="ltr">
<div class="gmail_extra"><div class="gmail_quote">On Tue, Apr 1, 2014 at 5:15 AM, Pierpaolo Minelli<span> </span><span dir="ltr"><<a href="mailto:pierpaolo.minelli@ba.imip.cnr.it" target="_blank">pierpaolo.minelli@ba.imip.cnr.it</a>></span><span> </span>wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="word-wrap:break-word">Hi,<div><br></div><div>i have some problems when i try to configure latest version of petsc-dev. </div>
<div>I use this command that was working with a previous version:</div><div><br></div><div><div style="margin:0px;font-size:14px;font-family:Menlo">./configure --PETSC_DIR=/raid0/users/cscppm59/Installers/petsc --PETSC_ARCH=petsc_dev --with-debugger=idbc --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --CFLAGS="-openmp -parallel" --FFLAGS="-ftz -O3 -prec-div -xSSE2 -mcmodel medium -shared-intel -openmp -parallel -fpp" --with-large-file-io=1 --with-debugging=0 --with-mpiexec="mpirun -f ~/mpd.hosts -r ssh" --with-blas-lapack-dir=/opt/intel/mkl/lib/intel64/ --with-threadcomm --with-openmp --with-x=0 --download-superlu_dist --download-parmetis -download-hypre -download-ml --download-metis</div>
</div><div style="margin:0px;font-size:14px;font-family:Menlo"><br></div><div style="margin:0px;font-size:14px;font-family:Menlo">and i receive this error:</div><div style="margin:0px;font-size:14px;font-family:Menlo"><br>
</div><div style="margin:0px;font-size:14px;font-family:Menlo"><div style="margin:0px">*******************************************************************************</div><div style="margin:0px"> <span> </span>UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</div>
<div style="margin:0px">-------------------------------------------------------------------------------</div><div style="margin:0px">Fortran libraries cannot be used with C++ compiler.</div><div style="margin:0px"> Run with --with-fc=0 or --with-cxx=0</div>
<div style="margin:0px">*******************************************************************************</div><div style="margin:0px"> <span> </span>File "./config/configure.py", line 272, in petsc_configure</div>
<div style="margin:0px"> <span> </span>framework.configure(out = sys.stdout)</div><div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/framework.py", line 935, in configure</div>
<div style="margin:0px"> <span> </span>child.configure()</div><div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/compilers.py", line 1396, in configure</div>
<div style="margin:0px"> <span> </span>self.executeTest(self.checkFortranLibraries)</div><div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/base.py", line 126, in executeTest</div>
<div style="margin:0px"> <span> </span>ret = test(*args,**kargs)</div><div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/compilers.py", line 1050, in checkFortranLibraries</div>
<div style="margin:0px"> <span> </span>raise RuntimeError('Fortran libraries cannot be used with C++ compiler.\n Run with --with-fc=0 or --with-cxx=0')</div><div style="margin:0px">================================================================================</div>
<div style="margin:0px">Finishing Configure Run at Tue Apr 1 11:33:05 2014</div><div style="margin:0px">================================================================================</div></div></div></blockquote><div>
<br></div><div>Send configure.log for this case. You can also try --with-cxxlib-autodetect=0. This means you might have to put the C++</div><div>compiler libraries in --LIBS=<>.</div><div><br></div><div> <span> </span>Thanks,</div>
<div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="word-wrap:break-word">
<div style="margin:0px;font-size:14px;font-family:Menlo"><div style="margin:0px">So i tried to configure using --with-cxx=0 since i use fortran and i receive a new error:</div><div style="margin:0px"><br></div><div style="margin:0px">
<div style="margin:0px">*******************************************************************************</div><div style="margin:0px"> <span> </span>UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</div>
<div style="margin:0px">-------------------------------------------------------------------------------</div><div style="margin:0px">Error: Hypre requires C++ compiler. None specified</div><div style="margin:0px">*******************************************************************************</div>
<div style="margin:0px"> <span> </span>File "./config/configure.py", line 272, in petsc_configure</div><div style="margin:0px"> <span> </span>framework.configure(out = sys.stdout)</div><div style="margin:0px">
<span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/framework.py", line 935, in configure</div><div style="margin:0px"> <span> </span>child.configure()</div><div style="margin:0px">
<span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 605, in configure</div><div style="margin:0px"> <span> </span>self.executeTest(self.configureLibrary)</div>
<div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/base.py", line 126, in executeTest</div><div style="margin:0px"> <span> </span>ret = test(*args,**kargs)</div>
<div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 533, in configureLibrary</div><div style="margin:0px"> <span> </span>for location, directory, lib, incl in self.generateGuesses():</div>
<div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 266, in generateGuesses</div><div style="margin:0px"> <span> </span>d = self.checkDownload(1)</div>
<div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 382, in checkDownload</div><div style="margin:0px"> <span> </span>return self.getInstallDir()</div>
<div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 221, in getInstallDir</div><div style="margin:0px"> <span> </span>return os.path.abspath(self.Install())</div>
<div style="margin:0px"> <span> </span>File "/home/users/cscppm59/Installers/petsc/config/PETSc/packages/hypre.py", line 48, in Install</div><div style="margin:0px"> <span> </span>raise RuntimeError('Error: Hypre requires C++ compiler. None specified')</div>
<div style="margin:0px">================================================================================</div><div style="margin:0px">Finishing Configure Run at Tue Apr 1 11:45:23 2014</div><div style="margin:0px">================================================================================</div>
<div style="margin:0px"><br></div><div style="margin:0px">Is there someone that could give me a workaround to solve this problem?</div><div style="margin:0px"><br></div><div style="margin:0px">Thanks in advance</div><div style="margin:0px">
<br></div></div></div><div></div></div></blockquote></div><br><br clear="all"><span class="HOEnZb"><font color="#888888"><div><br></div>--<span> </span><br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener</font></span></div></div></blockquote></div><span class="HOEnZb"><font color="#888888"><br></font></span></div></div><span class="HOEnZb"><font color="#888888"><br></font></span></blockquote></div><span class="HOEnZb"><font color="#888888"><br>
<br clear="all"><div><br></div>--<span> </span><br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</font></span></div>
</div></div></blockquote></div><br></div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener
</div></div>