Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Wed Oct 9 15:34:24 2013 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --download-elemental --with-cxx-dialect=C++11 PETSC_ARCH=arch-elemental --download-cmake --with-etags=0 Working directory: /sandbox/balay/petsc.clone Machine platform: ('Linux', 'petsc', '3.2.0-39-generic', '#62-Ubuntu SMP Thu Feb 28 00:28:53 UTC 2013', 'x86_64', 'x86_64') Python version: 2.7.3 (default, Apr 10 2013, 06:20:15) [GCC 4.6.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/sandbox/balay/petsc.clone/config/BuildSystem/config/framework.py:821) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:821) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/sandbox/balay/petsc.clone/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/lib/lightdm/lightdm/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/lib/lightdm/lightdm/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /mcs/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /software/common/bin/dbx...not found Checking for program /soft/apps/bin/dbx...not found Checking for program /soft/gnu/bin/dbx...not found Checking for program /soft/com/bin/dbx...not found Checking for program /soft/adm/bin/dbx...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/dbx...not found Checking for program /homes/balay/bin/dbx...not found Checking for program /soft/com/packages/absoft11.0/bin/dbx...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/dbx...not found Checking for program /soft/com/packages/intel/13/update5/bin/dbx...not found Checking for program /soft/com/packages/nag-5.3.1/bin/dbx...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/dbx...not found Checking for program /homes/balay/dbx...not found Checking for program /usr/lib/lightdm/lightdm/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /mcs/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /software/common/bin/xdb...not found Checking for program /soft/apps/bin/xdb...not found Checking for program /soft/gnu/bin/xdb...not found Checking for program /soft/com/bin/xdb...not found Checking for program /soft/adm/bin/xdb...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/xdb...not found Checking for program /homes/balay/bin/xdb...not found Checking for program /soft/com/packages/absoft11.0/bin/xdb...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/xdb...not found Checking for program /soft/com/packages/intel/13/update5/bin/xdb...not found Checking for program /soft/com/packages/nag-5.3.1/bin/xdb...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/xdb...not found Checking for program /homes/balay/xdb...not found Checking for program /usr/lib/lightdm/lightdm/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /mcs/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /software/common/bin/dsymutil...not found Checking for program /soft/apps/bin/dsymutil...not found Checking for program /soft/gnu/bin/dsymutil...not found Checking for program /soft/com/bin/dsymutil...not found Checking for program /soft/adm/bin/dsymutil...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/dsymutil...not found Checking for program /homes/balay/bin/dsymutil...not found Checking for program /soft/com/packages/absoft11.0/bin/dsymutil...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/dsymutil...not found Checking for program /soft/com/packages/intel/13/update5/bin/dsymutil...not found Checking for program /soft/com/packages/nag-5.3.1/bin/dsymutil...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/dsymutil...not found Checking for program /homes/balay/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/sandbox/balay/petsc.clone/config/PETSc/utilities/languages.py:28) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/sandbox/balay/petsc.clone/config/PETSc/utilities/languages.py:37) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:37) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMkdir from config.programs(/sandbox/balay/petsc.clone/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/lib/lightdm/lightdm/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /sbin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/sandbox/balay/petsc.clone/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/lib/lightdm/lightdm/autoreconf...not found Checking for program /usr/sbin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-KqLK70 All intermediate test results are stored in /tmp/petsc-KqLK70/config.programs Executing: cd /tmp/petsc-KqLK70/config.programs/autoconfdir&&/usr/bin/autoreconf ================================================================================ TEST configurePrograms from config.programs(/sandbox/balay/petsc.clone/config/BuildSystem/config/programs.py:65) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:65) Check for the programs needed to build and run PETSc Checking for program /usr/lib/lightdm/lightdm/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/lib/lightdm/lightdm/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /sbin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-KqLK70/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /usr/lib/lightdm/lightdm/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/lib/lightdm/lightdm/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/lib/lightdm/lightdm/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /sbin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /usr/lib/lightdm/lightdm/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/lib/lightdm/lightdm/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-KqLK70/config.programs/diff1" "/tmp/petsc-KqLK70/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /homes/balay/ps...not found Checking for program /usr/lib/lightdm/lightdm/gzip...not found Checking for program /usr/sbin/gzip...not found Checking for program /usr/bin/gzip...not found Checking for program /sbin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureGit from config.sourceControl(/sandbox/balay/petsc.clone/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/lib/lightdm/lightdm/git...not found Checking for program /usr/sbin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.7.9.5 ================================================================================ TEST configureMercurial from config.sourceControl(/sandbox/balay/petsc.clone/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/lib/lightdm/lightdm/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 2.7.1) ================================================================================ TEST configureCVS from config.sourceControl(/sandbox/balay/petsc.clone/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/lib/lightdm/lightdm/cvs...not found Checking for program /usr/sbin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" Executing: cvs --version stdout: Concurrent Versions System (CVS) 1.12.13-MirDebian-8 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Portions contributed by Thorsten Glaser for the MirOS Project. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/sandbox/balay/petsc.clone/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/lib/lightdm/lightdm/svn...not found Checking for program /usr/sbin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.6.17 ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/sandbox/balay/petsc.clone/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/sandbox/balay/petsc.clone" Defined "DIR" to ""/sandbox/balay/petsc.clone"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/sandbox/balay/petsc.clone/config/PETSc/utilities/petscdir.py:77) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:77) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/sandbox/balay/petsc.clone/config/PETSc/utilities/petscdir.py:84) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:84) bin/maint exists. This appears to be a repository clone Defined "VERSION_GIT" to ""eac4354e69c9fa8375b34702260aea8b9f91650b"" Defined "VERSION_DATE_GIT" to ""2013-10-09 12:53:47 -0500"" ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/sandbox/balay/petsc.clone/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "/home/petsc/datafiles" ================================================================================ TEST printEnvVariables from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1500) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1500) **** printenv **** MKL_HOME= INTEL_LICENSE_FILE=28518@licman1.mcs.anl.gov MATLABPATH= SSH_CLIENT=140.221.37.2 58172 22 LOGNAME=balay USER=balay PROMPT_COMMAND=echo -ne "\033]0;${USER}@${HOSTNAME}\007" HOME=/homes/balay PATH=/usr/lib/lightdm/lightdm:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/mcs/bin:/usr/local/bin:/software/common/bin:/soft/apps/bin:/soft/gnu/bin:/soft/com/bin:/soft/adm/bin:/homes/balay/bin/linux-Ubuntu_12.04-x86_64:/homes/balay/bin:/soft/com/packages/absoft11.0/bin:/soft/com/packages/MATLAB/R2013a/bin:/soft/com/packages/intel/13/update5/bin:/soft/com/packages/nag-5.3.1/bin:/soft/com/packages/pgi/136/linux86-64/13.6/bin NETGENDIR=/usr/share/netgen LD_LIBRARY_PATH=/soft/com/packages/intel/13/update5/lib/intel64:/soft/com/packages/nag-5.3.1/lib LD_LIBRARYN64_PATH= TERM=xterm SHELL=/bin/bash XDG_SESSION_COOKIE=be02825affa017d78a4a49670000000a-1381350843.398178-748462490 SHLVL=1 EDITOR=emacs -nw MANPATH=/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/opt/man:/software/common/adm/man:/soft/com/packages/absoft11.0/man:/soft/com/packages/intel/13/update5/man/en_US:/soft/com/packages/nag-5.3.1/man LANG=en_US.UTF-8 LD_LIBRARYN32_PATH= PYTHONPATH= VISUAL=emacs -nw ABSOFT=/soft/com/packages/absoft11.0 _=./configure TEXINPUTS= SIDL_DLL_PATH= NAG_KUSARI_FILE=licman1.mcs.anl.gov: SSH_TTY=/dev/pts/2 OLDPWD=/homes/balay CPLUS_INCLUDE_PATH= SPEECHD_PORT=7125 PWD=/sandbox/balay/petsc.clone IDL_PATH= MAIL=/var/mail/balay SSH_CONNECTION=140.221.37.2 58172 140.221.8.9 22 PAGER=less C_INCLUDE_PATH= LM_LICENSE_FILE=27000@licman1.mcs.anl.gov:27200@licman1.mcs.anl.gov ================================================================================ TEST resetEnvCompilers from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1507) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1472) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1472) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1491) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1491) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:400) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:400) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:410) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:410) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:526) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Locate a functional C compiler Executing: mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /usr/lib/lightdm/lightdm/mpicc...not found Checking for program /usr/sbin/mpicc...not found Checking for program /usr/bin/mpicc...found Defined make macro "CC" to "mpicc" Pushing language C All intermediate test results are stored in /tmp/petsc-KqLK70/config.setCompilers Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest /tmp/petsc-KqLK70/config.setCompilers/conftest.o Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest /tmp/petsc-KqLK70/config.setCompilers/conftest.o Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:561) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:561) Locate a functional C preprocessor Checking for program /usr/lib/lightdm/lightdm/mpicc...not found Checking for program /usr/sbin/mpicc...not found Checking for program /usr/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Pushing language C Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.setCompilers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.setCompilers/conftest.c" 2 Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:595) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:595) Locate a functional CUDA compiler Checking for program /usr/lib/lightdm/lightdm/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /mcs/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /software/common/bin/nvcc...not found Checking for program /soft/apps/bin/nvcc...not found Checking for program /soft/gnu/bin/nvcc...not found Checking for program /soft/com/bin/nvcc...not found Checking for program /soft/adm/bin/nvcc...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/nvcc...not found Checking for program /homes/balay/bin/nvcc...not found Checking for program /soft/com/packages/absoft11.0/bin/nvcc...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/nvcc...not found Checking for program /soft/com/packages/intel/13/update5/bin/nvcc...not found Checking for program /soft/com/packages/nag-5.3.1/bin/nvcc...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/nvcc...not found Checking for program /homes/balay/nvcc...not found Checking for program /sandbox/balay/petsc.clone/bin/win32fe/nvcc...not found Checking for program /usr/lib/lightdm/lightdm/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /mcs/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /software/common/bin/nvcc...not found Checking for program /soft/apps/bin/nvcc...not found Checking for program /soft/gnu/bin/nvcc...not found Checking for program /soft/com/bin/nvcc...not found Checking for program /soft/adm/bin/nvcc...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/nvcc...not found Checking for program /homes/balay/bin/nvcc...not found Checking for program /soft/com/packages/absoft11.0/bin/nvcc...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/nvcc...not found Checking for program /soft/com/packages/intel/13/update5/bin/nvcc...not found Checking for program /soft/com/packages/nag-5.3.1/bin/nvcc...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/nvcc...not found Checking for program /homes/balay/nvcc...not found Checking for program /sandbox/balay/petsc.clone/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:633) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:633) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:736) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:736) Locate a functional Cxx compiler Executing: mpicxx --help stdout: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /usr/lib/lightdm/lightdm/mpicxx...not found Checking for program /usr/sbin/mpicxx...not found Checking for program /usr/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.setCompilers/conftest /tmp/petsc-KqLK70/config.setCompilers/conftest.o Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.setCompilers/conftest /tmp/petsc-KqLK70/config.setCompilers/conftest.o Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:774) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:774) Locate a functional Cxx preprocessor Checking for program /usr/lib/lightdm/lightdm/mpicxx...not found Checking for program /usr/sbin/mpicxx...not found Checking for program /usr/bin/mpicxx...found Defined make macro "CXXCPP" to "mpicxx -E" Pushing language Cxx Executing: mpicxx -E -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-KqLK70/config.setCompilers/conftest.cc" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-KqLK70/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-KqLK70/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-KqLK70/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.6/cstdlib" 1 3 # 41 "/usr/include/c++/4.6/cstdlib" 3 # 42 "/usr/include/c++/4.6/cstdlib" 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 1 3 # 153 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 393 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 1 3 # 40 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 41 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 2 3 # 394 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/cpu_defines.h" 1 3 # 397 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 2 3 # 44 "/usr/include/c++/4.6/cstdlib" 2 3 # 66 "/usr/include/c++/4.6/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 33 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 236 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 55 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern "C" { # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 } # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 } # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 263 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 } # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 674 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 694 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 } # 67 "/usr/include/c++/4.6/cstdlib" 2 3 # 98 "/usr/include/c++/4.6/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 158 "/usr/include/c++/4.6/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; inline long long abs(long long __x) { return __x >= 0 ? __x : -__x; } using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 193 "/usr/include/c++/4.6/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::abs; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-KqLK70/config.setCompilers/conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:883) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:883) Locate a functional Fortran compiler Executing: mpif90 --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /usr/lib/lightdm/lightdm/mpif90...not found Checking for program /usr/sbin/mpif90...not found Checking for program /usr/bin/mpif90...found Defined make macro "FC" to "mpif90" Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.setCompilers/conftest /tmp/petsc-KqLK70/config.setCompilers/conftest.o Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.setCompilers/conftest /tmp/petsc-KqLK70/config.setCompilers/conftest.o Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:902) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Make sure fortran comment "!" works Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:965) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:965) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -fPIC Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o Valid C linker flag -fPIC Adding C compiler flag -fPIC Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx Trying Cxx compiler flag -fPIC Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Trying FC compiler flag -fPIC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o Valid FC linker flag -fPIC Adding FC compiler flag -fPIC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/lib/lightdm/lightdm/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/lib/lightdm/lightdm/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-KqLK70/config.setCompilers/libconf1.a /tmp/petsc-KqLK70/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-KqLK70/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/lib/lightdm/lightdm/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/lib/lightdm/lightdm/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-KqLK70/config.setCompilers/libconf1.a /tmp/petsc-KqLK70/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-KqLK70/config.setCompilers/libconf1.a Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o -L/tmp/petsc-KqLK70/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1208) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1208) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /usr/lib/lightdm/lightdm/mpicc...not found Checking for program /usr/sbin/mpicc...not found Checking for program /usr/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -shared -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o Valid C linker flag -shared Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o -L/tmp/petsc-KqLK70/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1286) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1286) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: mpicc -V Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -Wl,-rpath,/sandbox/balay/petsc.clone -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/sandbox/balay/petsc.clone Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.setCompilers/conftest -Wl,-rpath,/sandbox/balay/petsc.clone /tmp/petsc-KqLK70/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/sandbox/balay/petsc.clone Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: mpicc -V Trying FC linker flag -Wl,-rpath, Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.setCompilers/conftest -Wl,-rpath,/sandbox/balay/petsc.clone -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/sandbox/balay/petsc.clone Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1321) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1321) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1370) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1370) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-KqLK70/config.headers Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-KqLK70/config.libraries Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC /tmp/petsc-KqLK70/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /usr/lib/lightdm/lightdm/mpicc...not found Checking for program /usr/sbin/mpicc...not found Checking for program /usr/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -shared -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] /tmp/petsc-KqLK70/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] /tmp/petsc-KqLK70/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-KqLK70/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/setCompilers.py:1416) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "mpicxx -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C Executing: mpicc --version stdout: gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3 Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: mpicc gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3 Executing: mpicc -show stdout: gcc -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpich -lopa -lmpl -lrt -lcr -lpthread Defined make macro "MPICC_SHOW" to "gcc -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpich -lopa -lmpl -lrt -lcr -lpthread" Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: mpicc -show stdout: gcc -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpich -lopa -lmpl -lrt -lcr -lpthread Defined make macro "MPICC_SHOW" to "gcc -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpich -lopa -lmpl -lrt -lcr -lpthread" Trying C compiler flag -g3 Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Trying C compiler flag -fno-inline Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fno-inline Trying C compiler flag -O0 Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O0 Popping language C Pushing language Cxx Executing: mpicxx --version stdout: c++ (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3 Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: mpicxx c++ (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3 Executing: mpicxx -show stdout: c++ -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpichcxx -lmpich -lopa -lmpl -lrt -lcr -lpthread Defined make macro "MPICXX_SHOW" to "c++ -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpichcxx -lmpich -lopa -lmpl -lrt -lcr -lpthread" Executing: c++ --help stdout: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -Wall Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -Wall -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: mpicxx -show stdout: c++ -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpichcxx -lmpich -lopa -lmpl -lrt -lcr -lpthread Defined make macro "MPICXX_SHOW" to "c++ -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpichcxx -lmpich -lopa -lmpl -lrt -lcr -lpthread" Trying Cxx compiler flag -g Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Popping language Cxx Pushing language FC Executing: mpif90 --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: mpif90 GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3 Executing: mpif90 -show stdout: gfortran -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -I/usr/include/mpich2 -L/usr/lib -lmpichf90 -lmpichf90 -lmpich -lopa -lmpl -lrt -lcr -lpthread Defined make macro "MPIFC_SHOW" to "gfortran -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -I/usr/include/mpich2 -L/usr/lib -lmpichf90 -lmpichf90 -lmpich -lopa -lmpl -lrt -lcr -lpthread" Executing: gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Trying FC compiler flag -Wall Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Trying FC compiler flag -Wno-unused-dummy-argument Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Executing: mpif90 -show stdout: gfortran -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -I/usr/include/mpich2 -L/usr/lib -lmpichf90 -lmpichf90 -lmpich -lopa -lmpl -lrt -lcr -lpthread Defined make macro "MPIFC_SHOW" to "gfortran -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -I/usr/include/mpich2 -L/usr/lib -lmpichf90 -lmpichf90 -lmpich -lopa -lmpl -lrt -lcr -lpthread" Trying FC compiler flag -g Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/sandbox/balay/petsc.clone/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/sandbox/balay/petsc.clone/config/PETSc/utilities/arch.py:32) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:32) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-elemental"" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/sandbox/balay/petsc.clone/config/PETSc/utilities/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/sandbox/balay/petsc.clone/config/PETSc/utilities/sharedLibraries.py:51) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:51) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/sandbox/balay/petsc.clone/config/PETSc/utilities/sharedLibraries.py:90) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:90) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/sandbox/balay/petsc.clone/config/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(config/PETSc/utilities/bmakeDir.py:26) Makes $PETSC_ARCH and subdirectories if it does not exist Changed persistence directory to arch-elemental/conf ================================================================================ TEST checkRestrict from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:136) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:136) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-KqLK70/config.compilers Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ /tmp/petsc-KqLK70/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function) /tmp/petsc-KqLK70/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.compilers/conftest.c:5:23: warning: unused variable ‘x’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:308) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:308) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:107) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:107) Check for C keyword: static inline Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:319) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:319) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:163) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:163) Determines the libraries needed to link with C Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.o -ldl stdout: mpicc for MPICH2 version 1.4.1 Possible ERROR while running linker: stdout: mpicc for MPICH2 version 1.4.1stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' '_FORTIFY_SOURCE=2' '-o' '/tmp/petsc-KqLK70/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-g3' '-fno-inline' '-O0' '-I' '/usr/include/mpich2' '-L/usr/lib' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-KqLK70/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -Bsymbolic-functions -z relro /tmp/petsc-KqLK70/config.compilers/conftest.o -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH2 compilers: Unknown arg MPICH2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 1.4.1Using compilers: Unknown arg 1.4.1Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gcc compilers: Unknown arg COLLECT_GCC=gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.3 compilers: Unknown arg 4.6.3 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.3-1ubuntu5) compilers: Unknown arg 4.6.3-1ubuntu5) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-KqLK70/config.compilers/conftest compilers: Unknown arg /tmp/petsc-KqLK70/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/usr/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg -Bsymbolic-functions compilers: Unknown arg -Bsymbolic-functions compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg /tmp/petsc-KqLK70/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-KqLK70/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lmpich compilers: Found library : -lmpich compilers: Checking arg -lopa compilers: Found library : -lopa compilers: Checking arg -lmpl compilers: Found library : -lmpl compilers: Checking arg -lrt compilers: Found library : -lrt compilers: Checking arg -lcr compilers: Found library : -lcr compilers: Checking arg -lpthread compilers: Found library : -lpthread compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-ldl', '-lmpich', '-lopa', '-lmpl', '-lrt', '-lcr', '-lpthread', '-lgcc_s'] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:1320) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1320) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -MMD -MP /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -MMD -MP /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -MMD -MP /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Popping language FC ================================================================================ TEST checkRestrict from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:136) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:136) Check for the C/CXX restrict keyword Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-KqLK70/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-KqLK70/config.compilers/conftest.cc:5:23: warning: unused variable ‘x’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:357) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:357) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:332) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:332) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:121) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:121) Check for C++ keyword: static inline Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:408) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:408) Determines the libraries needed to link with C++ Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl stdout: mpicxx for MPICH2 version 1.4.1 Possible ERROR while running linker: stdout: mpicxx for MPICH2 version 1.4.1stderr: Using built-in specs. COLLECT_GCC=c++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-KqLK70/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-g' '-L/usr/lib/gcc/x86_64-linux-gnu/4.6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-I' '/usr/include/mpich2' '-L/usr/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-KqLK70/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -Bsymbolic-functions -z relro /tmp/petsc-KqLK70/config.compilers/conftest.o -rpath /usr/lib/gcc/x86_64-linux-gnu/4.6 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -lmpichcxx -lmpich -lopa -lmpl -lrt -lcr -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language Cxx compilers: Checking arg mpicxx compilers: Unknown arg mpicxx compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH2 compilers: Unknown arg MPICH2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 1.4.1Using compilers: Unknown arg 1.4.1Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=c++ compilers: Unknown arg COLLECT_GCC=c++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.3 compilers: Unknown arg 4.6.3 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.3-1ubuntu5) compilers: Unknown arg 4.6.3-1ubuntu5) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-KqLK70/config.compilers/conftest compilers: Unknown arg /tmp/petsc-KqLK70/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg -Bsymbolic-functions compilers: Unknown arg -Bsymbolic-functions compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg /tmp/petsc-KqLK70/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-KqLK70/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lmpich compilers: Found library: -lmpich Library already in C list so skipping in C++ compilers: Checking arg -lopa compilers: Found library: -lopa Library already in C list so skipping in C++ compilers: Checking arg -lmpl compilers: Found library: -lmpl Library already in C list so skipping in C++ compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in C++ compilers: Checking arg -lcr compilers: Found library: -lcr Library already in C list so skipping in C++ compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lmpichcxx compilers: Found library: -lmpichcxx compilers: Checking arg -lmpich compilers: Checking arg -lopa compilers: Checking arg -lmpl compilers: Checking arg -lrt compilers: Checking arg -lcr compilers: Checking arg -lpthread compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lmpichcxx', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpichcxx -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpichcxx -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpichcxx -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpichcxx -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:372) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:372) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/include/c++/4.6/random:35:0, from /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:3: /usr/include/c++/4.6/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-KqLK70/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:7:11: error: ‘random_device’ is not a member of ‘std’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:7:30: error: expected ‘;’ before ‘rd’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:8:11: error: ‘mt19937’ is not a member of ‘std’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:8:24: error: expected ‘;’ before ‘mt’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:9:11: error: ‘normal_distribution’ is not a member of ‘std’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:9:36: error: expected primary-expression before ‘double’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:9:36: error: expected ‘;’ before ‘double’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:10:33: error: ‘mt’ was not declared in this scope /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:10:35: error: ‘dist’ was not declared in this scope /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:10:24: warning: unused variable ‘x’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.6/random:35:0, from /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:3: /usr/include/c++/4.6/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-KqLK70/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:7:11: error: ‘random_device’ is not a member of ‘std’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:7:30: error: expected ‘;’ before ‘rd’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:8:11: error: ‘mt19937’ is not a member of ‘std’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:8:24: error: expected ‘;’ before ‘mt’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:9:11: error: ‘normal_distribution’ is not a member of ‘std’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:9:36: error: expected primary-expression before ‘double’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:9:36: error: expected ‘;’ before ‘double’ /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:10:33: error: ‘mt’ was not declared in this scope /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:10:35: error: ‘dist’ was not declared in this scope /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:10:24: warning: unused variable ‘x’ [-Wunused-variable] PETSc Error: No output file produced Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -std=c++11 -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: cc1plus: error: unrecognized command line option ‘-std=c++11’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag -std=c++11 due to nonzero status from link Rejecting compiler flag -std=c++11 due to cc1plus: error: unrecognized command line option ‘-std=c++11’ PETSc Error: No output file produced Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -std=c++0x -fPIC /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-KqLK70/config.setCompilers/conftest.cc:10:24: warning: unused variable ‘x’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:566) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:566) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:625) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:625) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o /tmp/petsc-KqLK70/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:662) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:662) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o /tmp/petsc-KqLK70/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-KqLK70/config.compilers/conftest.F:2: undefined reference to `d1_chk_' collect2: ld returned 1 exit status Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:672) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:672) Determine if Fortran handles preprocessing properly Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:693) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:693) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -DTesting /tmp/petsc-KqLK70/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:709) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:709) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: mpif90 -V Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl stdout: mpif90 for MPICH2 version 1.4.1 Possible ERROR while running linker: stdout: mpif90 for MPICH2 version 1.4.1stderr: Driving: gfortran -Wl,-Bsymbolic-functions -Wl,-z,relro -o /tmp/petsc-KqLK70/config.compilers/conftest -v -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -I/usr/include/mpich2 -I/usr/include/mpich2 -L/usr/lib -lmpichf90 -lmpichf90 -lmpich -lopa -lmpl -lrt -lcr -lpthread -l gfortran -l m -shared-libgcc -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec Using built-in specs. Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec rename spec lib to liborig COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-KqLK70/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-L/usr/lib/gcc/x86_64-linux-gnu/4.6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-I' '/usr/include/mpich2' '-I' '/usr/include/mpich2' '-L/usr/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-KqLK70/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -Bsymbolic-functions -z relro /tmp/petsc-KqLK70/config.compilers/conftest.o -rpath /usr/lib/gcc/x86_64-linux-gnu/4.6 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -lmpichf90 -lmpichf90 -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language FC compilers: Checking arg mpif90 compilers: Unknown arg mpif90 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH2 compilers: Unknown arg MPICH2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 1.4.1Driving: compilers: Unknown arg 1.4.1Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -Wl,-Bsymbolic-functions compilers: Unknown arg -Wl,-Bsymbolic-functions compilers: Checking arg -Wl,-z,relro compilers: Unknown arg -Wl,-z,relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-KqLK70/config.compilers/conftest compilers: Unknown arg /tmp/petsc-KqLK70/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -Wno-unused-variable compilers: Unknown arg -Wno-unused-variable compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /tmp/petsc-KqLK70/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-KqLK70/config.compilers/conftest.o compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -lmpich compilers: Found library: -lmpich Library already in C list so skipping in Fortran compilers: Checking arg -lopa compilers: Found library: -lopa Library already in C list so skipping in Fortran compilers: Checking arg -lmpl compilers: Found library: -lmpl Library already in C list so skipping in Fortran compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in Fortran compilers: Checking arg -lcr compilers: Found library: -lcr Library already in C list so skipping in Fortran compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -I/usr/include/mpich2 compilers: Found include directory: /usr/include/mpich2 compilers: Checking arg -I/usr/include/mpich2 compilers: Found include directory: /usr/include/mpich2 compilers: Checking arg -L/usr/lib compilers: Checking arg -lmpichf90 compilers: Found library: -lmpichf90 compilers: Checking arg -lmpichf90 compilers: Already in lflags: -lmpichf90 compilers: Checking arg -lmpich compilers: Already in lflags: -lmpich compilers: Checking arg -lopa compilers: Already in lflags: -lopa compilers: Checking arg -lmpl compilers: Already in lflags: -lmpl compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lcr compilers: Already in lflags: -lcr compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Unknown arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.3 compilers: Unknown arg 4.6.3 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.3-1ubuntu5) compilers: Unknown arg 4.6.3-1ubuntu5) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-KqLK70/config.compilers/conftest compilers: Unknown arg /tmp/petsc-KqLK70/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg -Bsymbolic-functions compilers: Unknown arg -Bsymbolic-functions compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg /tmp/petsc-KqLK70/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-KqLK70/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpich compilers: Already in lflags: -lmpich compilers: Checking arg -lopa compilers: Already in lflags: -lopa compilers: Checking arg -lmpl compilers: Already in lflags: -lmpl compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lcr compilers: Already in lflags: -lcr compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpichf90 compilers: Already in lflags: -lmpichf90 compilers: Checking arg -lmpichf90 compilers: Already in lflags: -lmpichf90 compilers: Checking arg -lmpich compilers: Already in lflags: -lmpich compilers: Checking arg -lopa compilers: Already in lflags: -lopa compilers: Checking arg -lmpl compilers: Already in lflags: -lmpl compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lcr compilers: Already in lflags: -lcr compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.setCompilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Executing: /tmp/petsc-KqLK70/config.setCompilers/conftest Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:1054) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1054) Check that Fortran can be linked against C++ Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o /tmp/petsc-KqLK70/config.compilers/cxxobj.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s /tmp/petsc-KqLK70/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:1089) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1089) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:1102) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1102) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:1122) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1122) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); abort(); } return; } Popping language C Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.compilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o /tmp/petsc-KqLK70/config.compilers/fooobj.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.compilers/conftest Executing: /tmp/petsc-KqLK70/config.compilers/conftest stdout: arrays [0x7ffff9868600 0x7ffff9868600 0x7ffff9868600] arrays [0x7ffff98685b0 0x7ffff9868560 0x7ffff98685b0] pointers do not match! [0xffffffff 0x7ffff9868600] [0x2] ERROR while running executable: Could not execute "/tmp/petsc-KqLK70/config.compilers/conftest": arrays [0x7ffff9868600 0x7ffff9868600 0x7ffff9868600] arrays [0x7ffff98685b0 0x7ffff9868560 0x7ffff98685b0] pointers do not match! [0xffffffff 0x7ffff9868600] [0x2] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:1209) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1209) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.compilers/conftest -I/tmp/petsc-KqLK70/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.o /tmp/petsc-KqLK70/config.compilers/configtest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:1275) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1275) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -module /tmp/petsc-KqLK70/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ‘-module’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -module:/tmp/petsc-KqLK70/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ‘-module:/tmp/petsc-KqLK70/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -fmod=/tmp/petsc-KqLK70/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ‘-fmod=/tmp/petsc-KqLK70/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.compilers/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -J/tmp/petsc-KqLK70/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/sandbox/balay/petsc.clone/config/BuildSystem/config/compilers.py:1406) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1406) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/sandbox/balay/petsc.clone/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: mpicc -c -o /tmp/petsc-KqLK70/config.headers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Executing: mpicc -c -o /tmp/petsc-KqLK70/config.headers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.headers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.headers/conftest Executing: /tmp/petsc-KqLK70/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 5 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/stat.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 105 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 long int __unused[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 108 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 211 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int stat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 240 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int fstatat (int __fd, __const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 265 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int lstat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 286 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int chmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int fchmodat (int __fd, __const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__ , __leaf__)); # 323 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int mkdir (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, __const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, __const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, __const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, __const char *__path, __const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, __const struct timespec __times[2]) __attribute__ ((__nothrow__ , __leaf__)); # 401 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, __const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))); # 444 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __xmknod (int __ver, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 5))); # 536 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 6 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: mpicc -c -o /tmp/petsc-KqLK70/config.headers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 28 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 57 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 191 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.headers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 28 "/usr/include/math.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_val.h" 1 3 4 # 35 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_valf.h" 1 3 4 # 37 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_vall.h" 1 3 4 # 38 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/inf.h" 1 3 4 # 41 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/nan.h" 1 3 4 # 44 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 2 3 4 typedef float float_t; typedef double double_t; # 48 "/usr/include/math.h" 2 3 4 # 71 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 128 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nan (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nan (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); # 72 "/usr/include/math.h" 2 3 4 # 94 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 128 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nanf (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nanf (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); # 95 "/usr/include/math.h" 2 3 4 # 146 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 128 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nanl (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nanl (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); # 147 "/usr/include/math.h" 2 3 4 # 162 "/usr/include/math.h" 3 4 extern int signgam; # 203 "/usr/include/math.h" 3 4 enum { FP_NAN, FP_INFINITE, FP_ZERO, FP_SUBNORMAL, FP_NORMAL }; # 296 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 321 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 483 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_MATH_H" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.headers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t process_vm_readv (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t process_vm_writev (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 177 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 178 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 193 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 280 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 310 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 337 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 383 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 384 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 417 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); extern int sendmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags); # 41 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 129 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 214 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 254 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 24 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 150 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 26 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 30 "/usr/include/stdio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 35 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 37 "/usr/include/stdio.h" 2 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 75 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 32 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 83 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 53 "/usr/include/_G_config.h" 3 4 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 33 "/usr/include/libio.h" 2 3 4 # 53 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 54 "/usr/include/libio.h" 2 3 4 # 172 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 182 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 205 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 273 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 321 "/usr/include/libio.h" 3 4 __off64_t _offset; # 330 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 366 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 418 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 462 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 492 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 76 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 91 "/usr/include/stdio.h" 3 4 typedef __off_t off_t; # 103 "/usr/include/stdio.h" 3 4 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 165 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdio_lim.h" 1 3 4 # 166 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) __attribute__ ((__nothrow__ , __leaf__)); extern int rename (__const char *__old, __const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern FILE *tmpfile (void) ; # 210 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; # 228 "/usr/include/stdio.h" 3 4 extern char *tempnam (__const char *__dir, __const char *__pfx) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 253 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 267 "/usr/include/stdio.h" 3 4 extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 296 "/usr/include/stdio.h" 3 4 # 307 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, __const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; # 320 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 418 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__ , __leaf__)); # 449 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (__const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__ , __leaf__)) ; # 469 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 500 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 528 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 556 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 567 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 600 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; # 662 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 734 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 770 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 789 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 812 "/usr/include/stdio.h" 3 4 # 821 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void perror (__const char *__s); # 1 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern __const char *__const sys_errlist[]; # 851 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; # 870 "/usr/include/stdio.h" 3 4 extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 910 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); # 940 "/usr/include/stdio.h" 3 4 # 27 "/usr/include/malloc.h" 2 3 4 # 58 "/usr/include/malloc.h" 3 4 extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void * pvalloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__ , __leaf__)); # 144 "/usr/include/malloc.h" 3 4 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__ , __leaf__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void malloc_stats (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_info (int __options, FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern void *malloc_get_state (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void (*__volatile __malloc_initialize_hook) (void) __attribute__ ((__deprecated__)); extern void (*__volatile __free_hook) (void *__ptr, __const void *) __attribute__ ((__deprecated__)); extern void *(*__volatile __malloc_hook) (size_t __size, __const void *) __attribute__ ((__deprecated__)); extern void *(*__volatile __realloc_hook) (void *__ptr, size_t __size, __const void *) __attribute__ ((__deprecated__)); extern void *(*__volatile __memalign_hook) (size_t __alignment, size_t __size, __const void *) __attribute__ ((__deprecated__)); extern void (*__volatile __after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 28 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/strings.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/strings.h" 2 3 4 extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); # 74 "/usr/include/strings.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 102 "/usr/include/strings.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((const)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 126 "/usr/include/strings.h" 2 3 4 extern int strcasecmp_l (__const char *__s1, __const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (__const char *__s1, __const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 24 "/usr/include/sched.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 74 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 97 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 120 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 203 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 12 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 26 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/wait.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 31 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 104 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 extern int __sigismember (__const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 34 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 58 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/signum.h" 1 3 4 # 59 "/usr/include/signal.h" 2 3 4 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 77 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 51 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef struct siginfo { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __clock_t si_utime; __clock_t si_stime; } _sigchld; struct { void *si_addr; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; } _sifields; } siginfo_t; # 129 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 273 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); void *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 80 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 99 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 113 "/usr/include/signal.h" 3 4 # 126 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, __const char *__s); extern void psiginfo (__const siginfo_t *__pinfo, __const char *__s); # 168 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 196 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 216 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (__const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 252 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 253 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, __const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (__const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, __const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (__const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (__const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (__const sigset_t *__restrict __set, siginfo_t *__restrict __info, __const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, __const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 310 "/usr/include/signal.h" 3 4 extern __const char *__const _sys_siglist[65]; extern __const char *__const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 334 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, __const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 2 3 4 struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 109 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { unsigned long r8; unsigned long r9; unsigned long r10; unsigned long r11; unsigned long r12; unsigned long r13; unsigned long r14; unsigned long r15; unsigned long rdi; unsigned long rsi; unsigned long rbp; unsigned long rbx; unsigned long rdx; unsigned long rax; unsigned long rcx; unsigned long rsp; unsigned long rip; unsigned long eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; unsigned long err; unsigned long trapno; unsigned long oldmask; unsigned long cr2; struct _fpstate * fpstate; unsigned long __reserved1 [8]; }; # 340 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 350 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 50 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 357 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 33 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 typedef long int greg_t; typedef greg_t gregset_t[23]; # 94 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; unsigned long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 360 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (__const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 394 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 395 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, __const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 396 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 32 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/resource.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/resource.h" 1 3 4 # 33 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 133 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 160 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 178 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 }; # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 182 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 268 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 88 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 33 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 63 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 80 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 81 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 102 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 116 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t wait (__WAIT_STATUS __stat_loc); # 139 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 # 144 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 155 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 23 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 74 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 97 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 120 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 203 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 26 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 30 "/usr/include/time.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 31 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; # 115 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 147 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 182 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 220 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 263 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 413 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 478 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 490 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 524 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 664 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 676 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 717 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 790 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (__const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 872 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 984 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1028 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1095 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1129 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); # 1143 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 26 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 31 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 32 "/usr/include/setjmp.h" 2 3 4 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); # 78 "/usr/include/setjmp.h" 3 4 extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; # 110 "/usr/include/setjmp.h" 3 4 extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 120 "/usr/include/setjmp.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/utsname.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 49 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/limits.h" 2 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 158 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 170 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 27 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 2 3 4 # 168 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 282 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 356 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 35 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 41 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 long int __unused[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 42 "/usr/include/fcntl.h" 2 3 4 # 110 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 119 "/usr/include/fcntl.h" 3 4 extern int open (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 143 "/usr/include/fcntl.h" 3 4 extern int openat (int __fd, __const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 165 "/usr/include/fcntl.h" 3 4 extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1))); # 194 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len); # 211 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len, int __advise) __attribute__ ((__nothrow__ , __leaf__)); # 233 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len); # 255 "/usr/include/fcntl.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: memory.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/memory.h" 1 3 4 # 26 "/usr/include/memory.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/memory.h" 2 3 4 # 1 "/usr/include/string.h" 1 3 4 # 29 "/usr/include/string.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 31 "/usr/include/memory.h" 2 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_MEMORY_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/times.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 30 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/pwd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/pwd.h" 2 3 4 # 73 "/usr/include/pwd.h" 3 4 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); # 95 "/usr/include/pwd.h" 3 4 extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (__const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (__const char *__name); # 140 "/usr/include/pwd.h" 3 4 extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/float.h" 1 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/param.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/param.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/limits.h" 2 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 158 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 170 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/linux/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 1 3 4 # 1 "/usr/include/asm-generic/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 2 3 4 # 5 "/usr/include/linux/param.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 53 "/usr/include/x86_64-linux-gnu/sys/param.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 54 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 26 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 24 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 2 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 201 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t process_vm_readv (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t process_vm_writev (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 177 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 178 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 193 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 280 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 310 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 337 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 383 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 384 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 417 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); extern int sendmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags); # 41 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 129 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 214 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 254 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 26 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 198 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 225 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 356 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 99 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 357 "/usr/include/netinet/in.h" 2 3 4 # 365 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 377 "/usr/include/netinet/in.h" 2 3 4 # 492 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 617 "/usr/include/netinet/in.h" 3 4 # 29 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/rpc/netdb.h" 1 3 4 # 42 "/usr/include/rpc/netdb.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 43 "/usr/include/rpc/netdb.h" 2 3 4 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__ , __leaf__)); extern void endrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbyname (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbyname_r (__const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); # 34 "/usr/include/netdb.h" 2 3 4 # 43 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 3 4 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 44 "/usr/include/netdb.h" 2 3 4 # 54 "/usr/include/netdb.h" 3 4 extern int *__h_errno_location (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 93 "/usr/include/netdb.h" 3 4 extern void herror (__const char *__str) __attribute__ ((__nothrow__ , __leaf__)); extern __const char *hstrerror (int __err_num) __attribute__ ((__nothrow__ , __leaf__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (__const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (__const char *__name); # 156 "/usr/include/netdb.h" 3 4 extern struct hostent *gethostbyname2 (__const char *__name, int __af); # 168 "/usr/include/netdb.h" 3 4 extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (__const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (__const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (__const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); # 199 "/usr/include/netdb.h" 3 4 extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (__const char *__name); # 238 "/usr/include/netdb.h" 3 4 extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (__const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (__const char *__name, __const char *__proto); extern struct servent *getservbyport (int __port, __const char *__proto); # 310 "/usr/include/netdb.h" 3 4 extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (__const char *__restrict __name, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (__const char *__name); extern struct protoent *getprotobynumber (int __proto); # 376 "/usr/include/netdb.h" 3 4 extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (__const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); # 397 "/usr/include/netdb.h" 3 4 extern int setnetgrent (__const char *__netgroup); extern void endnetgrent (void); # 414 "/usr/include/netdb.h" 3 4 extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); # 425 "/usr/include/netdb.h" 3 4 extern int innetgr (__const char *__netgroup, __const char *__host, __const char *__user, __const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); # 453 "/usr/include/netdb.h" 3 4 extern int rcmd (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p); # 465 "/usr/include/netdb.h" 3 4 extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 481 "/usr/include/netdb.h" 3 4 extern int rexec (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p); # 493 "/usr/include/netdb.h" 3 4 extern int rexec_af (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 507 "/usr/include/netdb.h" 3 4 extern int ruserok (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser); # 517 "/usr/include/netdb.h" 3 4 extern int ruserok_af (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); # 530 "/usr/include/netdb.h" 3 4 extern int iruserok (uint32_t __raddr, int __suser, __const char *__remuser, __const char *__locuser); # 541 "/usr/include/netdb.h" 3 4 extern int iruserok_af (__const void *__raddr, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); # 553 "/usr/include/netdb.h" 3 4 extern int rresvport (int *__alport); # 562 "/usr/include/netdb.h" 3 4 extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 664 "/usr/include/netdb.h" 3 4 extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__ , __leaf__)); extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__ , __leaf__)); extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, int __flags); # 715 "/usr/include/netdb.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 23 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/search.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 27 "/usr/include/search.h" 2 3 4 # 45 "/usr/include/search.h" 3 4 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__ , __leaf__)); extern void remque (void *__elem) __attribute__ ((__nothrow__ , __leaf__)); typedef int (*__compar_fn_t) (__const void *, __const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; # 88 "/usr/include/search.h" 3 4 extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__ , __leaf__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__ , __leaf__)); extern void hdestroy (void) __attribute__ ((__nothrow__ , __leaf__)); # 119 "/usr/include/search.h" 3 4 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (__const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (__const void *__key, void *__const *__rootp, __compar_fn_t __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 4 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 28 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 57 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 191 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 33 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 34 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/user.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/user.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/user.h" 2 3 4 # 1 "/usr/include/unistd.h" 1 3 4 # 28 "/usr/include/unistd.h" 3 4 # 203 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 204 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 208 "/usr/include/unistd.h" 2 3 4 # 227 "/usr/include/unistd.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 228 "/usr/include/unistd.h" 2 3 4 # 256 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; # 268 "/usr/include/unistd.h" 3 4 typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 288 "/usr/include/unistd.h" 3 4 extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, __const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 335 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 354 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, __const void *__buf, size_t __n) ; # 377 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, __const void *__buf, size_t __n, __off_t __offset) ; # 418 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 433 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 445 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 470 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, __const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 512 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 526 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 544 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (__const char *__path, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (__const char *__path, char *__const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (__const char *__file, char *__const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (__const char *__file, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 599 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 611 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (__const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 647 "/usr/include/unistd.h" 3 4 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 673 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 690 "/usr/include/unistd.h" 3 4 extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 723 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)); extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)); extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)); extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)); extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)); extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)); # 779 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (__const char *__from, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, __const char *__from, int __tofd, __const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (__const char *__from, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (__const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (__const char *__from, int __tofd, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, __const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, __const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 894 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 59 "/usr/include/getopt.h" 3 4 extern char *optarg; # 73 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 152 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 895 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (__const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (__const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (__const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1))); # 980 "/usr/include/unistd.h" 3 4 extern int fsync (int __fd); # 994 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 1018 "/usr/include/unistd.h" 3 4 extern int truncate (__const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1040 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1061 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1082 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1105 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1136 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1165 "/usr/include/unistd.h" 3 4 extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 1174 "/usr/include/unistd.h" 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/user.h" 2 3 4 struct user_fpregs_struct { unsigned short int cwd; unsigned short int swd; unsigned short int ftw; unsigned short int fop; unsigned long int rip; unsigned long int rdp; unsigned int mxcsr; unsigned int mxcr_mask; unsigned int st_space[32]; unsigned int xmm_space[64]; unsigned int padding[24]; }; struct user_regs_struct { unsigned long int r15; unsigned long int r14; unsigned long int r13; unsigned long int r12; unsigned long int rbp; unsigned long int rbx; unsigned long int r11; unsigned long int r10; unsigned long int r9; unsigned long int r8; unsigned long int rax; unsigned long int rcx; unsigned long int rdx; unsigned long int rsi; unsigned long int rdi; unsigned long int orig_rax; unsigned long int rip; unsigned long int cs; unsigned long int eflags; unsigned long int rsp; unsigned long int ss; unsigned long int fs_base; unsigned long int gs_base; unsigned long int ds; unsigned long int es; unsigned long int fs; unsigned long int gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; unsigned long int u_tsize; unsigned long int u_dsize; unsigned long int u_ssize; unsigned long int start_code; unsigned long int start_stack; long int signal; int reserved; struct user_regs_struct* u_ar0; struct user_fpregs_struct* u_fpstate; unsigned long int magic; char u_comm [32]; unsigned long int u_debugreg [8]; }; # 35 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 typedef unsigned long elf_greg_t; typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 60 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; # 79 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/resource.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/resource.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 133 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 160 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 178 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 }; # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 182 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 268 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 88 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 26 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/unistd.h" 2 3 4 # 203 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 204 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 208 "/usr/include/unistd.h" 2 3 4 # 218 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 219 "/usr/include/unistd.h" 2 3 4 typedef __ssize_t ssize_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 228 "/usr/include/unistd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 256 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 288 "/usr/include/unistd.h" 3 4 extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, __const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 335 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 354 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, __const void *__buf, size_t __n) ; # 377 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, __const void *__buf, size_t __n, __off_t __offset) ; # 418 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 433 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 445 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 470 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, __const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 512 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 526 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 544 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (__const char *__path, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (__const char *__path, char *__const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (__const char *__file, char *__const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (__const char *__file, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 599 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 611 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (__const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 647 "/usr/include/unistd.h" 3 4 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 673 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 690 "/usr/include/unistd.h" 3 4 extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 723 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)); extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)); extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)); extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)); extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)); extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)); # 779 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (__const char *__from, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, __const char *__from, int __tofd, __const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (__const char *__from, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (__const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (__const char *__from, int __tofd, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, __const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, __const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 894 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 59 "/usr/include/getopt.h" 3 4 extern char *optarg; # 73 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 152 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 895 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (__const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (__const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (__const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1))); # 980 "/usr/include/unistd.h" 3 4 extern int fsync (int __fd); # 994 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 1018 "/usr/include/unistd.h" 3 4 extern int truncate (__const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1040 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1061 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1082 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1105 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1136 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1165 "/usr/include/unistd.h" 3 4 extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 1174 "/usr/include/unistd.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 2 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 201 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t process_vm_readv (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t process_vm_writev (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 177 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 178 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 193 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 280 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 310 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 337 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 383 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 384 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 417 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); extern int sendmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags); # 41 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 129 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 214 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 254 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 26 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 198 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 225 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 356 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 99 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 357 "/usr/include/netinet/in.h" 2 3 4 # 365 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 377 "/usr/include/netinet/in.h" 2 3 4 # 492 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 617 "/usr/include/netinet/in.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: mpicc -c -o /tmp/petsc-KqLK70/config.headers/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/sandbox/balay/petsc.clone/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-KqLK70/PETSc.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST checkMemcmp from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:109) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:109) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-KqLK70/config.functions Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.functions/conftest Executing: /tmp/petsc-KqLK70/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:133) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:133) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 12 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 12 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 26 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" /tmp/petsc-KqLK70/config.functions/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.functions/conftest.c:17:1: warning: implicit declaration of function ‘sysinfo’ [-Wimplicit-function-declaration] Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:156) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:156) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vprintf’ [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_VPRINTF" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl ================================================================================ TEST checkVFPrintf from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:163) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:163) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vfprintf’ [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_VFPRINTF" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:170) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:170) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `_vsnprintf' collect2: ld returned 1 exit status Checking for functions [vsnprintf] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vsnprintf’ [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl ================================================================================ TEST checkNanosleep from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:214) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:214) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:190) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:190) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:200) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:200) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be /tmp/petsc-KqLK70/config.functions/conftest.c:6:5: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:206) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:206) Checks whether the variable argument list functionality is working Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/sandbox/balay/petsc.clone/config/BuildSystem/config/functions.py:88) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:88) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ‘snprintf’ [enabled by default] /tmp/petsc-KqLK70/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘bzero’ [enabled by default] /tmp/petsc-KqLK70/config.functions/conftest.c:37:6: warning: conflicting types for built-in function ‘fork’ [enabled by default] /tmp/petsc-KqLK70/config.functions/conftest.c:48:6: warning: conflicting types for built-in function ‘strcasecmp’ [enabled by default] /tmp/petsc-KqLK70/config.functions/conftest.c:52:6: warning: conflicting types for built-in function ‘memmove’ [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:83: undefined reference to `_sleep' /tmp/petsc-KqLK70/config.functions/conftest.c:113: undefined reference to `_getcwd' /tmp/petsc-KqLK70/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-KqLK70/config.functions/conftest.c:143: undefined reference to `_access' /tmp/petsc-KqLK70/config.functions/conftest.c:161: undefined reference to `_intel_fast_memset' /tmp/petsc-KqLK70/config.functions/conftest.c:197: undefined reference to `_snprintf' /tmp/petsc-KqLK70/config.functions/conftest.c:227: undefined reference to `sbreak' /tmp/petsc-KqLK70/config.functions/conftest.c:269: undefined reference to `PXFGETARG' /tmp/petsc-KqLK70/config.functions/conftest.c:335: undefined reference to `_intel_fast_memcpy' /tmp/petsc-KqLK70/config.functions/conftest.c:347: undefined reference to `sysctlbyname' /tmp/petsc-KqLK70/config.functions/conftest.c:353: undefined reference to `stricmp' collect2: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:17:6: warning: conflicting types for built-in function ‘bzero’ [enabled by default] /tmp/petsc-KqLK70/config.functions/conftest.c:27:6: warning: conflicting types for built-in function ‘fork’ [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘strcasecmp’ [enabled by default] /tmp/petsc-KqLK70/config.functions/conftest.c:23:6: warning: conflicting types for built-in function ‘memmove’ [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: ld returned 1 exit status Checking for functions [snprintf] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’ [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: ld returned 1 exit status Checking for functions [_lseek] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: ld returned 1 exit status Checking for functions [sleep] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `_access' collect2: ld returned 1 exit status Checking for functions [lseek] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [_intel_fast_memset] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status Checking for functions [access] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: ld returned 1 exit status Checking for functions [sbreak] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: ld returned 1 exit status Checking for functions [getcwd] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [PXFGETARG] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status Checking for functions [_intel_fast_memcpy] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status Checking for functions [sysctlbyname] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status Checking for functions [stricmp] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: ld returned 1 exit status ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/sandbox/balay/petsc.clone/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/sandbox/balay/petsc.clone/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2stderr: /tmp/petsc-KqLK70/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check_siginfo_t from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-KqLK70/config.types Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:13:11: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:13:1: error: unknown type name ‘__int64’ /tmp/petsc-KqLK70/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.types/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.types/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.types/conftest.c" # 1 "/tmp/petsc-KqLK70/config.types/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.types/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.types/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.types/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-KqLK70/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:6:16: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:115) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:115) Check for complex numbers in namespace std Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:136) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:136) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:148) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:148) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.types/conftest.F Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.types/conftest.F:3.16: d = dreal(3.0) 1 Error: Type of argument 'a' in call to 'dreal' at (1) should be COMPLEX(8), not REAL(4) Source: program main double precision d d = dreal(3.0) end Compile failed inside link Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:156) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:156) Checks for working const, and if not found defines it to empty string Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:30:12: warning: ‘t’ is used uninitialized in this function [-Wuninitialized] /tmp/petsc-KqLK70/config.types/conftest.c:46:25: warning: ‘b’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:212) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:212) If the machine is big endian, defines WORDS_BIGENDIAN Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:11:3: error: unknown type name ‘not’ /tmp/petsc-KqLK70/config.types/conftest.c:11:11: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘endian’ Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:316) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:316) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/sandbox/balay/petsc.clone/config/BuildSystem/config/types.py:362) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:362) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/sandbox/balay/petsc.clone/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/sandbox/balay/petsc.clone/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available Executing: uname -s stdout: Linux ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:250) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:250) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-KqLK70/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-KqLK70/config.libraries/conftest.c:8:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-KqLK70/config.libraries/conftest.c:11:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-KqLK70/config.libraries/conftest.c:14:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_sin': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `sin' /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_floor': /tmp/petsc-KqLK70/config.libraries/conftest.c:8: undefined reference to `floor' /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_log10': /tmp/petsc-KqLK70/config.libraries/conftest.c:11: undefined reference to `log10' /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_pow': /tmp/petsc-KqLK70/config.libraries/conftest.c:14: undefined reference to `pow' collect2: ld returned 1 exit status Popping language C Checking for functions [sin floor log10 pow] in library ['m'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-KqLK70/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-KqLK70/config.libraries/conftest.c:8:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-KqLK70/config.libraries/conftest.c:11:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-KqLK70/config.libraries/conftest.c:14:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Using libm for the math library ================================================================================ TEST checkMathErf from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:266) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:266) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_erf’: /tmp/petsc-KqLK70/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:275) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:275) Check for tgama() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_tgamma’: /tmp/petsc-KqLK70/config.libraries/conftest.c:5:44: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:284) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:284) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkCompression from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:292) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:292) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-KqLK70/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-KqLK70/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_compress': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `compress' /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_uncompress': /tmp/petsc-KqLK70/config.libraries/conftest.c:8: undefined reference to `uncompress' collect2: ld returned 1 exit status Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-KqLK70/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] /tmp/petsc-KqLK70/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-KqLK70/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lz -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBZ" to "1" Popping language C Using libz for the compression library ================================================================================ TEST checkRealtime from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:313) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:313) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:329) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:329) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/sandbox/balay/petsc.clone/config/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:35) Checks for limits All intermediate test results are stored in /tmp/petsc-KqLK70/PETSc.utilities.missing Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/sandbox/balay/petsc.clone/config/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:45) Checks if u_short is undefined Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c:6:9: warning: unused variable ‘foo’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/sandbox/balay/petsc.clone/config/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/sandbox/balay/petsc.clone/config/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/sandbox/balay/petsc.clone/config/PETSc/utilities/missing.py:88) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:88) Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c:14:5: warning: unused variable ‘err’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.cc: In function ‘int main()’: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.cc:14:5: warning: unused variable ‘err’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/sandbox/balay/petsc.clone/config/PETSc/utilities/missing.py:110) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:110) Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.c:10:8: warning: variable ‘a’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.cc: In function ‘int main()’: /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.cc:10:8: warning: variable ‘a’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/PETSc.utilities.missing/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/sandbox/balay/petsc.clone/config/PETSc/utilities/missing.py:134) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:134) ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/sandbox/balay/petsc.clone/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for functions [get_command_argument_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_get_command_argument_': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `get_command_argument_' collect2: ld returned 1 exit status Popping language C Checking for functions [getarg_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_getarg_': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `getarg_' collect2: ld returned 1 exit status Popping language C Checking for functions [ipxfargc_] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `ipxfargc_' collect2: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `f90_unix_MP_iargc' collect2: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status Checking for functions [iargc_] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.o: In function `main': /tmp/petsc-KqLK70/config.functions/conftest.c:24: undefined reference to `iargc_' collect2: ld returned 1 exit status Checking for functions [GETARG@16] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.functions/conftest.c:13:1: error: stray ‘@’ in program /tmp/petsc-KqLK70/config.functions/conftest.c:13:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before numeric constant /tmp/petsc-KqLK70/config.functions/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.functions/conftest.c:21:27: error: missing ')' after "defined" /tmp/petsc-KqLK70/config.functions/conftest.c:21:28: error: missing binary operator before token "16" /tmp/petsc-KqLK70/config.functions/conftest.c:24:1: error: stray ‘@’ in program /tmp/petsc-KqLK70/config.functions/conftest.c:24:1: error: ‘GETARG’ undeclared (first use in this function) /tmp/petsc-KqLK70/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-KqLK70/config.functions/conftest.c:24:8: error: expected ‘;’ before numeric constant Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) GETARG@16_will_always_fail_with_ENOSYS(); #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: mpicc -c -o /tmp/petsc-KqLK70/config.functions/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Defined "HAVE__GFORTRAN_IARGC" to "1" Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C ================================================================================ TEST configureTimers from PETSc.utilities.timer(/sandbox/balay/petsc.clone/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for functions [MPI_CRAY_barrier] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); static void _check_MPI_CRAY_barrier() { MPI_CRAY_barrier(); } int main() { _check_MPI_CRAY_barrier();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_CRAY_barrier': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `MPI_CRAY_barrier' collect2: ld returned 1 exit status Popping language C Cray-MPI test failure ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/sandbox/balay/petsc.clone/config/PETSc/utilities/scalarTypes.py:37) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_ISNAN" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_ISINF" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ‘_isnan’ [-Wimplicit-function-declaration] /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_isnan' collect2: ld returned 1 exit status Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ‘_finite’ [-Wimplicit-function-declaration] /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-KqLK70/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_finite' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/sandbox/balay/petsc.clone/config/PETSc/utilities/scalarTypes.py:73) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:73) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Precision is double ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/sandbox/balay/petsc.clone/config/PETSc/utilities/libraryOptions.py:48) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:48) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/sandbox/balay/petsc.clone/config/PETSc/utilities/libraryOptions.py:92) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:92) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" ================================================================================ TEST configureMake from config.packages.make(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/make.py:61) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:61) Check for user specified make - or gmake, make Checking for program /usr/lib/lightdm/lightdm/gmake...not found Checking for program /usr/sbin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /sbin/gmake...not found Checking for program /bin/gmake...not found Checking for program /usr/games/gmake...not found Checking for program /mcs/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /software/common/bin/gmake...not found Checking for program /soft/apps/bin/gmake...not found Checking for program /soft/gnu/bin/gmake...not found Checking for program /soft/com/bin/gmake...not found Checking for program /soft/adm/bin/gmake...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/gmake...not found Checking for program /homes/balay/bin/gmake...not found Checking for program /soft/com/packages/absoft11.0/bin/gmake...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/gmake...not found Checking for program /soft/com/packages/intel/13/update5/bin/gmake...not found Checking for program /soft/com/packages/nag-5.3.1/bin/gmake...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/gmake...not found Checking for program /homes/balay/gmake...not found Checking for program /sandbox/balay/petsc.clone/bin/win32fe/gmake...not found Checking for program /usr/lib/lightdm/lightdm/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/make.py:79) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:79) Check for GNU make Checking for program /usr/lib/lightdm/lightdm/strings...not found Checking for program /usr/sbin/strings...not found Checking for program /usr/bin/strings...found Executing: /usr/bin/strings /usr/bin/make stdout: /lib64/ld-linux-x86-64.so.2 kfUa librt.so.1 __gmon_start__ _Jv_RegisterClasses clock_gettime libc.so.6 fflush strcpy __rawmemchr __printf_chk fnmatch readdir _IO_putc setlocale fopen strsignal strncmp optind strrchr wait pipe __strdup dcgettext closedir sigprocmask __stack_chk_fail __lxstat unlink realloc abort stdin _exit getpid kill __assert_fail mkstemp strtod strtol feof getloadavg fgets getpwnam calloc strlen sigemptyset memset glob strstr __errno_location chdir memcmp dup2 __fprintf_chk sigaddset ctime putenv stdout fputs lseek memcpy fclose malloc remove __strncpy_chk opendir __ctype_b_loc getenv sscanf optarg stderr alarm getlogin readlink setrlimit getopt_long execvp __fxstat __realpath_chk getcwd fwrite fread gettimeofday sigaction waitpid localtime strchr vfork __vfprintf_chk fdopen qsort __strcpy_chk __ctype_tolower_loc setvbuf fcntl __sprintf_chk bsd_signal __xstat getrlimit memmove bindtextdomain opterr strcmp strerror __libc_start_main ferror globfree sysconf __environ __cxa_atexit GLIBC_2.2.5 GLIBC_2.3 GLIBC_2.14 GLIBC_2.4 GLIBC_2.3.4 5*a" %,a" %*a" %"a" %z`" %r`" %j`" %b`" %Z`" %R`" %J`" %B`" %:`" %2`" %*`" %"`" %z_" %r_" %j_" %b_" %Z_" %R_" %J_" %B_" %:_" %2_" %*_" %"_" %z^" %r^" %j^" %b^" %Z^" %R^" %J^" %B^" %:^" %2^" %*^" %"^" AWAVI AUATSH =Si" =ii" ;/t) =6e" =Pd" GmXXXXXXL =)`" =p\" =?\" d$PM tfE1 =;Y" =H`" ~ =u1H = S" t/~a %*U" =OQ" fff. |$0H \$@H fffff. :)t,H t$ H ATUH []A\ AWAVI ATSH ?tVH [A\A]A^A_] AWAVAUATI T$ H D$7H [A\A]A^A_] l$7I |$0H <" D;%2<" ="<" AWAVAUATI []A\A]A^A_ tAH9 \uBH |$ D <-tT<@tH<+uQ <-t5<@t)<+u A L$0E9 fff. ATUSH @u1I []A\ []A\ ATUSH []A\A] ==)" ffffff. 5p5" fffff. AVAUATUSH =m1" []A\A]A^ []A\A]A^ fffff. AVAUI ATUH H[]A\A]A^A_ t$0f H[]A\A]A^ D$(f []A\A]A^A_ t$0L t$0f t$(H t=H; fff. fff. ffffff. AVAUATUSH L9l$ []A\A]A^A_ L9l$ L9l$ ffffff. fffff. 5$#" l$ H -#," ATSH [A\] ffffff. =J)" C(@t+ C(E1 C(u[H \$(H l$0L d$8L l$@L t$HL |$PH AWAVAUATSH [A\A]A^A_] =s"" =,"" ffffff. ffff. []A\A] []A\A] []A\A] fffff. tV<.u-f L;%= D$XL \$XI AWAVAUATI H;-# S@H;U@v []A\A]A^A_ fffff. l$ L d$(L l$0L t$8L |$@H l$ L d$(L l$0L t$8L |$@H AWAVAUATI D$(H D$0L D$ I |$(H 8[]A\A]A^A_ H9\$ AVAUATUSH []A\A]A^A_ |$(H ATUSH D$81 D$8dH3 @[]A\ ffff. D$81 T$8dH3 AWAVAUI ATUSH H;-R L;|$ []A\A]A^A_ ffff. ffff. l$ H AVAUATI E1 [A\A]A^A_] AUATUS u>[]A\A]A^ t1L;% l$ L t$(L |$0H td;S fff. fff. fff. AWE1 AVE1 AUATE1 |$ H D$,D T$ H T$ D T$,E T$(D T$ D 8[]A\A]A^A_ ffff. ffff. AUATI []A\A] t0<$u []A\A] AWAVI AUATUH []A\A]A^A_ fffff. fffff. ffffff. L;5W \$HH l$PL d$XL l$`L t$hL |$pH AWAVAUATUS1 []A\A]A^A_ H;l$ 4$Mc H9l$ L94$s ffffff. fffff. AWAVAUATUSH t H; t$H=P []A\A]A^A_ []A\A]A^A_ AWAVAUATI L;=h t$pH D$x L;-k []A\A]A^A_ ffff. t=H9 d$ L l$(L t$0H U0fA u8E1 fffff. AVAUI ATSH $t^A <$=u <$=u (tIA [A\A]A^] D$ H D$*H \$8H l$@L d$HL l$PH ffff. AVAUATU D$(H T$ H T$ I []A\A]A^A_ T$ L T$(I T$0H AWAVAUATUSH D$(H D$ H L$ D D$ H D$(H 8[]A\A]A^A_ |$ B 8[]A\A]A^A_ t$(E1 L+t$ +tfH L9d$ ATUSH t=9r(r8H []A\A] []A\A] :/tLH []A\ ffff. ATUSH D$ H D$ H []A\A] []A\A] t$ H fff. AWAVI AUATUSH tyE1 tAH;5 t(I9 []A\A]A^A_ l$ L d$(L l$0L t$8L |$@H H;5X l$ H d$(L l$0L t$8L |$@H ffffff. ATUH []A\A] fff. fff. H;=A D$ A\ fff. H;=Q []A\ fffff. ATUSH []A\A] ffff. ATUH []A\A]H fffff. ATUH t_L9 s+f. []A\ l$ L t$(L |$0H touch: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES $(MAKE) ${MAKE} kill # commands to execute (built-in): (from `%s', line %lu): %.*s $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o .cc.o .C.o .cpp.o .f.o .p.o .F.o .r.o .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln .l.ln .y.c .l.c @$(RM) $@ $(LEX.l) $< > $@ .F.f .r.f .l.r .S.s $(PREPROCESS.S) $< > $@ .texinfo.info .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% SCCS/s.% ARFLAGS CHECKOUT,v COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi CWEAVE cweave CTANGLE ctangle rm -f LINK.o COMPILE.c LINK.c COMPILE.cc COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t COMPILE.f LINK.f COMPILE.F LINK.F COMPILE.r LINK.r COMPILE.def COMPILE.mod COMPILE.p LINK.p LINK.s COMPILE.s LINK.S COMPILE.S PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F PREPROCESS.r LINT.c OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(COMPILE.c) $(OUTPUT_OPTION) $< $(COMPILE.cc) $(OUTPUT_OPTION) $< $(COMPILE.C) $(OUTPUT_OPTION) $< $(COMPILE.cpp) $(OUTPUT_OPTION) $< $(COMPILE.f) $(OUTPUT_OPTION) $< $(COMPILE.p) $(OUTPUT_OPTION) $< $(COMPILE.F) $(OUTPUT_OPTION) $< $(COMPILE.r) $(OUTPUT_OPTION) $< $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c $(YACC.y) $< mv -f y.tab.c $@ $(PREPROCESS.F) $(OUTPUT_OPTION) $< $(PREPROCESS.r) $(OUTPUT_OPTION) $< $(LEX.l) $< > $@ mv -f lex.yy.r $@ $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) $(CC) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) # Directories # %s: could not be stat'd. files, impossibilities so far. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' file.c *name != '\0' .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d # Not a target: %s:%s | %s # Command-line target. # Also makes: # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Successfully updated. question_flag # Failed to be updated. Current time # Files # files hash-table stats: Commands were specified for file `%s' at %s:%lu, Commands for file `%s' were found by implicit rule search, but `%s' is now considered the same file as `%s'. Commands for `%s' will be ignored in favor of those for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Modification time never checked. # Commands currently running (THIS IS A BUG). # Dependencies commands running (THIS IS A BUG). # Needs to be updated (-q is set). # Invalid value in `update_status' member! %s: Timestamp out of range; substituting %s lookup_file enter_file print_file undefined default environment environment override command line automatic basename addprefix %s:%lu: recursive simple filter %s: '%s' abspath addsuffix notdir filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard wordlist words origin foreach call warning value eval Internal error: func_error: '%s' Cleaning up temporary batch file %s insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 unterminated call to function `%s': missing `%c' Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible implicit prerequisite `%s'. Rejecting impossible rule prerequisite `%s'. Trying implicit prerequisite `%s'. Trying rule prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child 0x%08lx (%s) but no tokens left! Released token for child 0x%08lx (%s). %s (line %d) Bad shell context (!unixy && !batch_mode_shell) cannot enforce load limits on this operating system Estimated system load = %f (actual = %f) (max requested = %f) Putting child 0x%08lx (%s) PID %ld%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child 0x%08lx (%s) PID %ld %s Reaping losing child 0x%08lx PID %ld %s Reaping winning child 0x%08lx PID %ld %s Cleaning up temp batch file %s Removing child 0x%08lx PID %ld%s from chain. Need a job token; we %shave children INTERNAL: no children as we go to sleep on read Obtained token for child 0x%08lx (%s). write jobserver job.c ap <= end \$\{%u\} [%s] Error %d (ignored) *** [%s] Error %d (core dumped) *** [%s] %s%s %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(IFS) /bin/sh vfork cannot enforce load limit: getloadavg (remote) remote_status wait .DELETE_ON_ERROR don't Duplicate the job FD read jobs pipe Read returned EBADF. break case continue exec exit login logout read readonly shift switch test trap umask while start_waiting_job construct_command_argv_internal %sThis program built for %s write MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering directory `%s' %s: Leaving directory `%s' This program built for %s /tmp /usr/share/locale getcwd .VARIABLES .FEATURES archives check-symlink MAKE_RESTARTS MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL %d,%d dup jobserver creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' was not found chdir Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u main.c unlink (temporary file): No targets Updating goal targets.... always-make basic debug environment-overrides help ignore-errors include-dir jobs jobserver-fds load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch version no-print-directory what-if warn-undefined-variables quiet stop new-file assume-new assume-old max-load dry-run recon Options: %sGNU Make %s %sCopyright (C) 2006 Free Software Foundation, Inc. %sThis is free software; see the source for copying conditions. %sThere is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A %sPARTICULAR PURPOSE. %sThis program built for %s (%s) # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name %s: Entering an unknown directory %s: Leaving an unknown directory %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `-%c' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s (%s) Report bugs to target-specific order-only second-expansion else-if unknown debug level specification `%s' Makefile from standard input specified twice. internal error: multiple --jobserver-fds options internal error: invalid --jobserver-fds string `%s' warning: -jN forced in submake: disabling jobserver mode. warning: jobserver unavailable: using -j1. Add `+' to parent make rule. Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. .DEFAULT_GOAL contains more than one target No targets specified and no makefile found warning: Clock skew detected. Your build may be incomplete. Couldn't change back to original directory. -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from commands. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any commands; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no commands; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo commands. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. main $(-*-command-variables-*-) %s: %s[%u]: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s virtual memory exhausted write error: %s write error warning: NUL character seen; rest of line ignored Extraneous text after `endef' directive missing `endef', unterminated `define' Extraneous text after `%s' directive only one `else' per conditional prerequisites cannot be defined in command scripts mixed implicit and static pattern rules mixed implicit and normal rules target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding commands for target `%s' warning: ignoring old commands for target `%s' commands commence before first target (did you mean TAB instead of 8 spaces?) Malformed target-specific variable definition target pattern contains no `%%' define endef ifdef ifndef ifeq ifneq else endif extraneous `%s' .POSIX .SECONDEXPANSION $(HOME) HOME /usr/include .INCLUDE_DIRS invalid syntax in conditional extraneous `endef' empty variable name empty `override' directive invalid `override' directive unexport vpath -include sinclude missing rule before commands missing separator%s read.c *p2 != '\0' v != 0 missing target pattern multiple target patterns missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) GNUmakefile Makefile /usr/gnu/include /usr/local/include eval record_target_var lstat: readlink: $(strip $(.LIBPATTERNS)) %s/%s touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. remake.c Nothing to be done for `%s'. `%s' is up to date. /usr/lib/x86_64-linux-gnu /usr/lib /usr/local/lib %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s .LIBPATTERNS element `%s' is not a pattern Warning: File `%s' has modification time %.2g s in the future Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default commands for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No commands for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. Commands of `%s' are being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 update_file_1 A(%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules wrong! %u != %u Y@strcache.c best->bytesfree > len %s # of strcache buffers: %d %s # of strings in strcache: %d %s strcache size: total = %d / max = %d / min = %d / avg = %d %s strcache free: total = %d / max = %d / min = %d / avg = %d add_string environment under -e (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) variable.c %s%s%s MAKE_VERSION MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) # Variables %s : pop_variable_scope current_variable_set_list->next != ((void *)0) # variable set hash-table stats: # Pattern-specific Variable Values # %u pattern-specific variable values # No pattern-specific variable values. x86_64-pc-linux-gnu 3.81 $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %ld bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% ;*3$" .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el /bin/sh #;"*?[]&|<>(){}$`^~! -c eval\ \"set\ x\;\ shift\;\ Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "OMAKE " to "/usr/bin/make --print-directory" Defined make macro "OMAKE_NOPRINTDIR " to "/usr/bin/make --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:746) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:746) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in Package specific search directory MPI: [] ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Checking for headers Package specific search directory MPI: ['/usr/include/mpich2'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/usr/include/mpich2'] Checking include with compiler flags var CPPFLAGS ['/usr/include/mpich2'] Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.headers -I/usr/include/mpich2 /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/mpich2/mpi.h" 1 # 23 "/usr/include/mpich2/mpi.h" typedef int MPI_Datatype; # 124 "/usr/include/mpich2/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 210 "/usr/include/mpich2/mpi.h" extern int MPICH_ATTR_FAILED_PROCESSES; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; # 227 "/usr/include/mpich2/mpi.h" typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; # 255 "/usr/include/mpich2/mpi.h" typedef int MPI_Errhandler; # 276 "/usr/include/mpich2/mpi.h" typedef int MPI_Request; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); # 327 "/usr/include/mpich2/mpi.h" enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18 }; typedef int MPI_Info; # 372 "/usr/include/mpich2/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; # 385 "/usr/include/mpich2/mpi.h" typedef long long MPI_Offset; typedef struct MPI_Status { int count; int cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; # 441 "/usr/include/mpich2/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; # 460 "/usr/include/mpich2/mpi.h" typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); # 546 "/usr/include/mpich2/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); # 569 "/usr/include/mpich2/mpi.h" int MPI_Send(void*, int, MPI_Datatype, int, int, MPI_Comm); int MPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *); int MPI_Get_count(MPI_Status *, MPI_Datatype, int *); int MPI_Bsend(void*, int, MPI_Datatype, int, int, MPI_Comm); int MPI_Ssend(void*, int, MPI_Datatype, int, int, MPI_Comm); int MPI_Rsend(void*, int, MPI_Datatype, int, int, MPI_Comm); int MPI_Buffer_attach( void*, int); int MPI_Buffer_detach( void*, int *); int MPI_Isend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Ibsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Issend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Irsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Wait(MPI_Request *, MPI_Status *); int MPI_Test(MPI_Request *, int *, MPI_Status *); int MPI_Request_free(MPI_Request *); int MPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int MPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Waitall(int, MPI_Request *, MPI_Status *); int MPI_Testall(int, MPI_Request *, int *, MPI_Status *); int MPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int MPI_Probe(int, int, MPI_Comm, MPI_Status *); int MPI_Cancel(MPI_Request *); int MPI_Test_cancelled(MPI_Status *, int *); int MPI_Send_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Bsend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *); int MPI_Ssend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *); int MPI_Rsend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *); int MPI_Recv_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *); int MPI_Start(MPI_Request *); int MPI_Startall(int, MPI_Request *); int MPI_Sendrecv(void *, int, MPI_Datatype,int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *); int MPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *); int MPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int MPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int MPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int MPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int MPI_Address(void*, MPI_Aint *); int MPI_Type_extent(MPI_Datatype, MPI_Aint *); int MPI_Type_size(MPI_Datatype, int *); int MPI_Type_lb(MPI_Datatype, MPI_Aint *); int MPI_Type_ub(MPI_Datatype, MPI_Aint *); int MPI_Type_commit(MPI_Datatype *); int MPI_Type_free(MPI_Datatype *); int MPI_Get_elements(MPI_Status *, MPI_Datatype, int *); int MPI_Pack(void*, int, MPI_Datatype, void *, int, int *, MPI_Comm); int MPI_Unpack(void*, int, int *, void *, int, MPI_Datatype, MPI_Comm); int MPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int MPI_Barrier(MPI_Comm ); int MPI_Bcast(void*, int, MPI_Datatype, int, MPI_Comm ); int MPI_Gather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int MPI_Gatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm); int MPI_Scatter(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int MPI_Scatterv(void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int MPI_Allgather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm); int MPI_Allgatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm); int MPI_Alltoall(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm); int MPI_Alltoallv(void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm); int MPI_Reduce(void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm); int MPI_Op_create(MPI_User_function *, int, MPI_Op *); int MPI_Op_free( MPI_Op *); int MPI_Allreduce(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm); int MPI_Reduce_scatter(void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm); int MPI_Scan(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm ); int MPI_Group_size(MPI_Group, int *); int MPI_Group_rank(MPI_Group, int *); int MPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *); int MPI_Group_compare(MPI_Group, MPI_Group, int *); int MPI_Comm_group(MPI_Comm, MPI_Group *); int MPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_free(MPI_Group *); int MPI_Comm_size(MPI_Comm, int *); int MPI_Comm_rank(MPI_Comm, int *); int MPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int MPI_Comm_dup(MPI_Comm, MPI_Comm *); int MPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int MPI_Comm_free(MPI_Comm *); int MPI_Comm_test_inter(MPI_Comm, int *); int MPI_Comm_remote_size(MPI_Comm, int *); int MPI_Comm_remote_group(MPI_Comm, MPI_Group *); int MPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm * ); int MPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int MPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int MPI_Keyval_free(int *); int MPI_Attr_put(MPI_Comm, int, void*); int MPI_Attr_get(MPI_Comm, int, void *, int *); int MPI_Attr_delete(MPI_Comm, int); int MPI_Topo_test(MPI_Comm, int *); int MPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Dims_create(int, int, int *); int MPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Graphdims_get(MPI_Comm, int *, int *); int MPI_Graph_get(MPI_Comm, int, int, int *, int *); int MPI_Cartdim_get(MPI_Comm, int *); int MPI_Cart_get(MPI_Comm, int, int *, int *, int *); int MPI_Cart_rank(MPI_Comm, int *, int *); int MPI_Cart_coords(MPI_Comm, int, int, int *); int MPI_Graph_neighbors_count(MPI_Comm, int, int *); int MPI_Graph_neighbors(MPI_Comm, int, int, int *); int MPI_Cart_shift(MPI_Comm, int, int, int *, int *); int MPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int MPI_Cart_map(MPI_Comm, int, int *, int *, int *); int MPI_Graph_map(MPI_Comm, int, int *, int *, int *); int MPI_Get_processor_name(char *, int *); int MPI_Get_version(int *, int *); int MPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int MPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int MPI_Errhandler_free(MPI_Errhandler *); int MPI_Error_string(int, char *, int *); int MPI_Error_class(int, int *); double MPI_Wtime(void); double MPI_Wtick(void); double PMPI_Wtime(void); double PMPI_Wtick(void); int MPI_Init(int *, char ***); int MPI_Finalize(void); int MPI_Initialized(int *); int MPI_Abort(MPI_Comm, int); int MPI_Pcontrol(const int, ...); int MPIR_Dup_fn ( MPI_Comm, int, void *, void *, void *, int * ); int MPI_Close_port(char *); int MPI_Comm_accept(char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_connect(char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_disconnect(MPI_Comm *); int MPI_Comm_get_parent(MPI_Comm *); int MPI_Comm_join(int, MPI_Comm *); int MPI_Comm_spawn(char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int MPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int MPI_Lookup_name(char *, MPI_Info, char *); int MPI_Open_port(MPI_Info, char *); int MPI_Publish_name(char *, MPI_Info, char *); int MPI_Unpublish_name(char *, MPI_Info, char *); int MPI_Accumulate(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win); int MPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win); int MPI_Put(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win); int MPI_Win_complete(MPI_Win); int MPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int MPI_Win_fence(int, MPI_Win); int MPI_Win_free(MPI_Win *); int MPI_Win_get_group(MPI_Win, MPI_Group *); int MPI_Win_lock(int, int, int, MPI_Win); int MPI_Win_post(MPI_Group, int, MPI_Win); int MPI_Win_start(MPI_Group, int, MPI_Win); int MPI_Win_test(MPI_Win, int *); int MPI_Win_unlock(int, MPI_Win); int MPI_Win_wait(MPI_Win); int MPI_Alltoallw(void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int MPI_Exscan(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Add_error_class(int *); int MPI_Add_error_code(int, int *); int MPI_Add_error_string(int, char *); int MPI_Comm_call_errhandler(MPI_Comm, int); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int MPI_Comm_delete_attr(MPI_Comm, int); int MPI_Comm_free_keyval(int *); int MPI_Comm_get_attr(MPI_Comm, int, void *, int *); int MPI_Comm_get_name(MPI_Comm, char *, int *); int MPI_Comm_set_attr(MPI_Comm, int, void *); int MPI_Comm_set_name(MPI_Comm, char *); int MPI_File_call_errhandler(MPI_File, int); int MPI_Grequest_complete(MPI_Request); int MPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int MPI_Init_thread(int *, char ***, int, int *); int MPI_Is_thread_main(int *); int MPI_Query_thread(int *); int MPI_Status_set_cancelled(MPI_Status *, int); int MPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int MPI_Type_delete_attr(MPI_Datatype, int); int MPI_Type_dup(MPI_Datatype, MPI_Datatype *); int MPI_Type_free_keyval(int *); int MPI_Type_get_attr(MPI_Datatype, int, void *, int *); int MPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int MPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int MPI_Type_get_name(MPI_Datatype, char *, int *); int MPI_Type_set_attr(MPI_Datatype, int, void *); int MPI_Type_set_name(MPI_Datatype, char *); int MPI_Type_match_size( int, int, MPI_Datatype *); int MPI_Win_call_errhandler(MPI_Win, int); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int MPI_Win_delete_attr(MPI_Win, int); int MPI_Win_free_keyval(int *); int MPI_Win_get_attr(MPI_Win, int, void *, int *); int MPI_Win_get_name(MPI_Win, char *, int *); int MPI_Win_set_attr(MPI_Win, int, void *); int MPI_Win_set_name(MPI_Win, char *); # 823 "/usr/include/mpich2/mpi.h" int MPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int MPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int MPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int MPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int MPI_File_set_errhandler(MPI_File, MPI_Errhandler); int MPI_Finalized(int *); int MPI_Free_mem(void *); int MPI_Get_address(void *, MPI_Aint *); int MPI_Info_create(MPI_Info *); int MPI_Info_delete(MPI_Info, char *); int MPI_Info_dup(MPI_Info, MPI_Info *); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info, char *, int, char *, int *); int MPI_Info_get_nkeys(MPI_Info, int *); int MPI_Info_get_nthkey(MPI_Info, int, char *); int MPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int MPI_Info_set(MPI_Info, char *, char *); int MPI_Pack_external(char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *); int MPI_Pack_external_size(char *, int, MPI_Datatype, MPI_Aint *); int MPI_Request_get_status(MPI_Request, int *, MPI_Status *); int MPI_Status_c2f(MPI_Status *, MPI_Fint *); int MPI_Status_f2c(MPI_Fint *, MPI_Status *); int MPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int MPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int MPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Unpack_external(char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype); int MPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int MPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int MPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int MPI_Type_create_f90_integer( int, MPI_Datatype * ); int MPI_Type_create_f90_real( int, int, MPI_Datatype * ); int MPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int MPI_Reduce_local(void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); # 891 "/usr/include/mpich2/mpi.h" int PMPI_Send(void*, int, MPI_Datatype, int, int, MPI_Comm); int PMPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *); int PMPI_Get_count(MPI_Status *, MPI_Datatype, int *); int PMPI_Bsend(void*, int, MPI_Datatype, int, int, MPI_Comm); int PMPI_Ssend(void*, int, MPI_Datatype, int, int, MPI_Comm); int PMPI_Rsend(void*, int, MPI_Datatype, int, int, MPI_Comm); int PMPI_Buffer_attach( void* buffer, int); int PMPI_Buffer_detach( void* buffer, int *); int PMPI_Isend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Ibsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Issend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Irsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPI_Test(MPI_Request *, int *, MPI_Status *); int PMPI_Request_free(MPI_Request *); int PMPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Waitall(int, MPI_Request *, MPI_Status *); int PMPI_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int PMPI_Probe(int, int, MPI_Comm, MPI_Status *); int PMPI_Cancel(MPI_Request *); int PMPI_Test_cancelled(MPI_Status *, int *); int PMPI_Send_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Bsend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Ssend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Rsend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Recv_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Start(MPI_Request *); int PMPI_Startall(int, MPI_Request *); int PMPI_Sendrecv(void *, int, MPI_Datatype, int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *); int PMPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *); int PMPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int PMPI_Address(void*, MPI_Aint *); int PMPI_Type_extent(MPI_Datatype, MPI_Aint *); int PMPI_Type_size(MPI_Datatype, int *); int PMPI_Type_lb(MPI_Datatype, MPI_Aint *); int PMPI_Type_ub(MPI_Datatype, MPI_Aint *); int PMPI_Type_commit(MPI_Datatype *); int PMPI_Type_free(MPI_Datatype *); int PMPI_Get_elements(MPI_Status *, MPI_Datatype, int *); int PMPI_Pack(void*, int, MPI_Datatype, void *, int, int *, MPI_Comm); int PMPI_Unpack(void*, int, int *, void *, int, MPI_Datatype, MPI_Comm); int PMPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int PMPI_Barrier(MPI_Comm ); int PMPI_Bcast(void* buffer, int, MPI_Datatype, int, MPI_Comm ); int PMPI_Gather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int PMPI_Gatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm); int PMPI_Scatter(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int PMPI_Scatterv(void* , int *, int *displs, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int PMPI_Allgather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm); int PMPI_Allgatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm); int PMPI_Alltoall(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm); int PMPI_Alltoallv(void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm); int PMPI_Reduce(void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm); int PMPI_Op_create(MPI_User_function *, int, MPI_Op *); int PMPI_Op_free( MPI_Op *); int PMPI_Allreduce(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm); int PMPI_Reduce_scatter(void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm); int PMPI_Scan(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm ); int PMPI_Group_size(MPI_Group, int *); int PMPI_Group_rank(MPI_Group, int *); int PMPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *); int PMPI_Group_compare(MPI_Group, MPI_Group, int *); int PMPI_Comm_group(MPI_Comm, MPI_Group *); int PMPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_free(MPI_Group *); int PMPI_Comm_size(MPI_Comm, int *); int PMPI_Comm_rank(MPI_Comm, int *); int PMPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int PMPI_Comm_dup(MPI_Comm, MPI_Comm *); int PMPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int PMPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int PMPI_Comm_free(MPI_Comm *); int PMPI_Comm_test_inter(MPI_Comm, int *); int PMPI_Comm_remote_size(MPI_Comm, int *); int PMPI_Comm_remote_group(MPI_Comm, MPI_Group *); int PMPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm *); int PMPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int PMPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int PMPI_Keyval_free(int *); int PMPI_Attr_put(MPI_Comm, int, void*); int PMPI_Attr_get(MPI_Comm, int, void *, int *); int PMPI_Attr_delete(MPI_Comm, int); int PMPI_Topo_test(MPI_Comm, int *); int PMPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Dims_create(int, int, int *); int PMPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Graphdims_get(MPI_Comm, int *, int *); int PMPI_Graph_get(MPI_Comm, int, int, int *, int *); int PMPI_Cartdim_get(MPI_Comm, int *); int PMPI_Cart_get(MPI_Comm, int, int *, int *, int *); int PMPI_Cart_rank(MPI_Comm, int *, int *); int PMPI_Cart_coords(MPI_Comm, int, int, int *); int PMPI_Graph_neighbors_count(MPI_Comm, int, int *); int PMPI_Graph_neighbors(MPI_Comm, int, int, int *); int PMPI_Cart_shift(MPI_Comm, int, int, int *, int *); int PMPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int PMPI_Cart_map(MPI_Comm, int, int *, int *, int *); int PMPI_Graph_map(MPI_Comm, int, int *, int *, int *); int PMPI_Get_processor_name(char *, int *); int PMPI_Get_version(int *, int *); int PMPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int PMPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int PMPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int PMPI_Errhandler_free(MPI_Errhandler *); int PMPI_Error_string(int, char *, int *); int PMPI_Error_class(int, int *); int PMPI_Init(int *, char ***); int PMPI_Finalize(void); int PMPI_Initialized(int *); int PMPI_Abort(MPI_Comm, int); int PMPI_Pcontrol(const int, ...); int PMPI_Close_port(char *); int PMPI_Comm_accept(char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_connect(char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_disconnect(MPI_Comm *); int PMPI_Comm_get_parent(MPI_Comm *); int PMPI_Comm_join(int, MPI_Comm *); int PMPI_Comm_spawn(char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int PMPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int PMPI_Lookup_name(char *, MPI_Info, char *); int PMPI_Open_port(MPI_Info, char *); int PMPI_Publish_name(char *, MPI_Info, char *); int PMPI_Unpublish_name(char *, MPI_Info, char *); int PMPI_Accumulate(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win); int PMPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win); int PMPI_Put(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win); int PMPI_Win_complete(MPI_Win); int PMPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int PMPI_Win_fence(int, MPI_Win); int PMPI_Win_free(MPI_Win *); int PMPI_Win_get_group(MPI_Win, MPI_Group *); int PMPI_Win_lock(int, int, int, MPI_Win); int PMPI_Win_post(MPI_Group, int, MPI_Win); int PMPI_Win_start(MPI_Group, int, MPI_Win); int PMPI_Win_test(MPI_Win, int *); int PMPI_Win_unlock(int, MPI_Win); int PMPI_Win_wait(MPI_Win); int PMPI_Alltoallw(void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int PMPI_Exscan(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Add_error_class(int *); int PMPI_Add_error_code(int, int *); int PMPI_Add_error_string(int, char *); int PMPI_Comm_call_errhandler(MPI_Comm, int); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int PMPI_Comm_delete_attr(MPI_Comm, int); int PMPI_Comm_free_keyval(int *); int PMPI_Comm_get_attr(MPI_Comm, int, void *, int *); int PMPI_Comm_get_name(MPI_Comm, char *, int *); int PMPI_Comm_set_attr(MPI_Comm, int, void *); int PMPI_Comm_set_name(MPI_Comm, char *); int PMPI_File_call_errhandler(MPI_File, int); int PMPI_Grequest_complete(MPI_Request); int PMPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int PMPI_Init_thread(int *, char ***, int, int *); int PMPI_Is_thread_main(int *); int PMPI_Query_thread(int *); int PMPI_Status_set_cancelled(MPI_Status *, int); int PMPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int PMPI_Type_delete_attr(MPI_Datatype, int); int PMPI_Type_dup(MPI_Datatype, MPI_Datatype *); int PMPI_Type_free_keyval(int *); int PMPI_Type_get_attr(MPI_Datatype, int, void *, int *); int PMPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int PMPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int PMPI_Type_get_name(MPI_Datatype, char *, int *); int PMPI_Type_set_attr(MPI_Datatype, int, void *); int PMPI_Type_set_name(MPI_Datatype, char *); int PMPI_Type_match_size( int, int, MPI_Datatype *); int PMPI_Win_call_errhandler(MPI_Win, int); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int PMPI_Win_delete_attr(MPI_Win, int); int PMPI_Win_free_keyval(int *); int PMPI_Win_get_attr(MPI_Win, int, void *, int *); int PMPI_Win_get_name(MPI_Win, char *, int *); int PMPI_Win_set_attr(MPI_Win, int, void *); int PMPI_Win_set_name(MPI_Win, char *); int PMPI_Type_create_f90_integer( int, MPI_Datatype * ); int PMPI_Type_create_f90_real( int, int, MPI_Datatype * ); int PMPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int PMPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int PMPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int PMPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int PMPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int PMPI_File_set_errhandler(MPI_File, MPI_Errhandler); int PMPI_Finalized(int *); int PMPI_Free_mem(void *); int PMPI_Get_address(void *, MPI_Aint *); int PMPI_Info_create(MPI_Info *); int PMPI_Info_delete(MPI_Info, char *); int PMPI_Info_dup(MPI_Info, MPI_Info *); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info, char *, int, char *, int *); int PMPI_Info_get_nkeys(MPI_Info, int *); int PMPI_Info_get_nthkey(MPI_Info, int, char *); int PMPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int PMPI_Info_set(MPI_Info, char *, char *); int PMPI_Pack_external(char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *); int PMPI_Pack_external_size(char *, int, MPI_Datatype, MPI_Aint *); int PMPI_Request_get_status(MPI_Request, int *, MPI_Status *); int PMPI_Status_c2f(MPI_Status *, MPI_Fint *); int PMPI_Status_f2c(MPI_Fint *, MPI_Status *); int PMPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int PMPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int PMPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Unpack_external(char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype); int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int PMPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int PMPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int PMPI_Reduce_local(void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block(void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); # 1184 "/usr/include/mpich2/mpi.h" # 1 "/usr/include/mpich2/mpio.h" 1 # 13 "/usr/include/mpich2/mpio.h" # 1 "/usr/include/mpich2/mpi.h" 1 # 14 "/usr/include/mpich2/mpio.h" 2 # 119 "/usr/include/mpich2/mpio.h" int MPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int MPI_File_close(MPI_File *); int MPI_File_delete(char *, MPI_Info); int MPI_File_set_size(MPI_File, MPI_Offset); int MPI_File_preallocate(MPI_File, MPI_Offset); int MPI_File_get_size(MPI_File, MPI_Offset *); int MPI_File_get_group(MPI_File, MPI_Group *); int MPI_File_get_amode(MPI_File, int *); int MPI_File_set_info(MPI_File, MPI_Info); int MPI_File_get_info(MPI_File, MPI_Info *); int MPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int MPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int MPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_seek(MPI_File, MPI_Offset, int); int MPI_File_get_position(MPI_File, MPI_Offset *); int MPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int MPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_seek_shared(MPI_File, MPI_Offset, int); int MPI_File_get_position_shared(MPI_File, MPI_Offset *); int MPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype); int MPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype); int MPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype); int MPI_File_read_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype); int MPI_File_write_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype); int MPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype); int MPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int MPI_Register_datarep(char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int MPI_File_set_atomicity(MPI_File, int); int MPI_File_get_atomicity(MPI_File, int *); int MPI_File_sync(MPI_File); # 248 "/usr/include/mpich2/mpio.h" MPI_File MPI_File_f2c(MPI_Fint); MPI_Fint MPI_File_c2f(MPI_File); # 305 "/usr/include/mpich2/mpio.h" int PMPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete(char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype); int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype); int PMPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype); int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype); int PMPI_File_write_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype); int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype); int PMPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep(char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 419 "/usr/include/mpich2/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 1185 "/usr/include/mpich2/mpi.h" 2 # 1208 "/usr/include/mpich2/mpi.h" typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, MPIX_Grequest_class *); int MPIX_Grequest_class_allocate(MPIX_Grequest_class, void *, MPI_Request *); int MPIX_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, void *, MPI_Request *); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, MPIX_Grequest_class *); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class, void *, MPI_Request *); int PMPIX_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, void *, MPI_Request *); # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Found header files ['mpi.h'] in ['/usr/include/mpich2'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /tmp/petsc-KqLK70/config.packages.MPI Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:6:10: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:182) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:182) Check for functions added to the interface in MPI-2 Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl ================================================================================ TEST configureTypes from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.types/conftest Executing: /tmp/petsc-KqLK70/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.packages.MPI/conftest Executing: /tmp/petsc-KqLK70/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: /tmp/petsc-KqLK70/config.packages.MPI/conftest Executing: /tmp/petsc-KqLK70/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:320) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:320) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:632) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:632) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: ld returned 1 exit status Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:642) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:642) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.libraries/conftest.cc: In function ‘void _check_MPI_Finalize()’: /tmp/petsc-KqLK70/config.libraries/conftest.cc:5:41: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:660) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:660) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' end Checking for fortran mpi_init() Checking for functions [] in library [] [] Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language FC Checking for mpi.mod Checking for functions [] in library [] [] Pushing language FC Executing: mpif90 -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:685) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:685) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:9:23: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:9:23: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:9:22: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:9:22: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:9:1: warning: passing argument 5 of ‘MPI_File_set_view’ discards ‘const’ qualifier from pointer target type [enabled by default] /usr/include/mpich2/mpio.h:131:5: note: expected ‘char *’ but argument is of type ‘const char *’ /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:9:22: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:9:22: warning: ‘disp’ is used uninitialized in this function [-Wuninitialized] /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:9:22: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:8:1: warning: passing argument 2 of ‘MPI_File_open’ discards ‘const’ qualifier from pointer target type [enabled by default] /usr/include/mpich2/mpio.h:119:5: note: expected ‘char *’ but argument is of type ‘const char *’ /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:8:18: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:7:10: warning: unused variable ‘info’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:722) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:722) Find MPI include paths from "mpicc -show" Executing: mpicc -show stdout: gcc -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpich -lopa -lmpl -lrt -lcr -lpthread compilers: Checking arg gcc compilers: Checking arg -D_FORTIFY_SOURCE=2 compilers: Checking arg -Wl,-Bsymbolic-functions compilers: Checking arg -Wl,-z,relro compilers: Checking arg -I/usr/include/mpich2 compilers: Found include directory: /usr/include/mpich2 compilers: Checking arg -L/usr/lib compilers: Checking arg -lmpich compilers: Checking arg -lopa compilers: Checking arg -lmpl compilers: Checking arg -lrt compilers: Checking arg -lcr compilers: Checking arg -lpthread Checking for functions [MPI_Alltoallw] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_Iallreduce': /tmp/petsc-KqLK70/config.libraries/conftest.c:15: undefined reference to `MPI_Iallreduce' /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_Ibarrier': /tmp/petsc-KqLK70/config.libraries/conftest.c:17: undefined reference to `MPI_Ibarrier' collect2: ld returned 1 exit status Popping language C Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Checking for functions [MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_Iallreduce': /tmp/petsc-KqLK70/config.libraries/conftest.c:7: undefined reference to `MPI_Iallreduce' /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_Ibarrier': /tmp/petsc-KqLK70/config.libraries/conftest.c:9: undefined reference to `MPI_Ibarrier' collect2: ld returned 1 exit status Popping language C Checking for functions [MPI_Init_thread MPI_Iallreduce] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } int main() { _check_MPI_Init_thread(); _check_MPI_Iallreduce();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_Iallreduce': /tmp/petsc-KqLK70/config.libraries/conftest.c:7: undefined reference to `MPI_Iallreduce' collect2: ld returned 1 exit status Popping language C Checking for functions [MPI_Init_thread] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } int main() { _check_MPI_Init_thread();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Checking for functions [MPI_Iallreduce] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } int main() { _check_MPI_Iallreduce();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_Iallreduce': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `MPI_Iallreduce' collect2: ld returned 1 exit status Popping language C Checking for functions [MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_Ibarrier': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `MPI_Ibarrier' collect2: ld returned 1 exit status Popping language C Checking for functions [MPI_Ibarrier] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } int main() { _check_MPI_Ibarrier();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPI_Ibarrier': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `MPI_Ibarrier' collect2: ld returned 1 exit status Popping language C Checking for functions [MPI_Finalized] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } int main() { _check_MPI_Finalized();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Checking for functions [MPI_Exscan] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' collect2: ld returned 1 exit status Popping language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/usr/include/mpich2 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPIDI_CH3I_sock_set': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `MPIDI_CH3I_sock_set' collect2: ld returned 1 exit status Popping language C Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_MPIDI_CH3I_sock_fixed_nbc_progress': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `MPIDI_CH3I_sock_fixed_nbc_progress' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:132) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:132) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/MPI.py:145) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:145) Checking for mpiexec Pushing language C Popping language C Checking for program /usr/include/bin/mpiexec...not found Checking for program /usr/include/bin/mpirun...not found Checking for program /usr/include/bin/mprun...not found Checking for program /usr/include/bin/mpiexec...not found Checking for program /usr/include/bin/mpirun...not found Checking for program /usr/include/bin/mprun...not found Checking for program /usr/mpd/bin/mpiexec...not found Checking for program /usr/mpd/bin/mpirun...not found Checking for program /usr/mpd/bin/mprun...not found Checking for program /usr/mpd/bin/mpiexec...not found Checking for program /usr/mpd/bin/mpirun...not found Checking for program /usr/mpd/bin/mprun...not found Checking for program /usr/lib/lightdm/lightdm/mpiexec...not found Checking for program /usr/lib/lightdm/lightdm/mpirun...not found Checking for program /usr/lib/lightdm/lightdm/mprun...not found Checking for program /usr/lib/lightdm/lightdm/mpiexec...not found Checking for program /usr/lib/lightdm/lightdm/mpirun...not found Checking for program /usr/lib/lightdm/lightdm/mprun...not found Checking for program /usr/sbin/mpiexec...not found Checking for program /usr/sbin/mpirun...not found Checking for program /usr/sbin/mprun...not found Checking for program /usr/sbin/mpiexec...not found Checking for program /usr/sbin/mpirun...not found Checking for program /usr/sbin/mprun...not found Checking for program /usr/bin/mpiexec...found Defined make macro "MPIEXEC" to "mpiexec" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/usr/include/mpich2 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/usr/include/mpich2 /tmp/petsc-KqLK70/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.packages.MPI/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.packages.MPI/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/petsc-KqLK70/config.libraries/lib1.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/petsc-KqLK70/config.libraries/lib2.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl -ldl Executing: mpiexec /tmp/petsc-KqLK70/config.libraries/conftest Executing: mpiexec /tmp/petsc-KqLK70/config.libraries/conftest Library was shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf-cxx(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.netcdf-cxx(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.threadcomm(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.threadcomm(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hwloc(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.hwloc(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.tetgen(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.tetgen(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PVODE(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.PVODE(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.babel(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Disabled Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing or if it is needed Checking for program /usr/lib/lightdm/lightdm/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/games/bfort...not found Checking for program /mcs/bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /software/common/bin/bfort...not found Checking for program /soft/apps/bin/bfort...not found Checking for program /soft/gnu/bin/bfort...not found Checking for program /soft/com/bin/bfort...not found Checking for program /soft/adm/bin/bfort...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/bfort...not found Checking for program /homes/balay/bin/bfort...not found Checking for program /soft/com/packages/absoft11.0/bin/bfort...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/bfort...not found Checking for program /soft/com/packages/intel/13/update5/bin/bfort...not found Checking for program /soft/com/packages/nag-5.3.1/bin/bfort...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/bfort...not found Checking for program /homes/balay/bfort...not found Checking for program /sandbox/balay/petsc.clone/bin/win32fe/bfort...not found Checking for program /usr/lib/lightdm/lightdm/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/games/doctext...not found Checking for program /mcs/bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /software/common/bin/doctext...not found Checking for program /soft/apps/bin/doctext...not found Checking for program /soft/gnu/bin/doctext...not found Checking for program /soft/com/bin/doctext...not found Checking for program /soft/adm/bin/doctext...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/doctext...not found Checking for program /homes/balay/bin/doctext...not found Checking for program /soft/com/packages/absoft11.0/bin/doctext...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/doctext...not found Checking for program /soft/com/packages/intel/13/update5/bin/doctext...not found Checking for program /soft/com/packages/nag-5.3.1/bin/doctext...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/doctext...not found Checking for program /homes/balay/doctext...not found Checking for program /sandbox/balay/petsc.clone/bin/win32fe/doctext...not found Checking for program /usr/lib/lightdm/lightdm/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/games/mapnames...not found Checking for program /mcs/bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /software/common/bin/mapnames...not found Checking for program /soft/apps/bin/mapnames...not found Checking for program /soft/gnu/bin/mapnames...not found Checking for program /soft/com/bin/mapnames...not found Checking for program /soft/adm/bin/mapnames...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/mapnames...not found Checking for program /homes/balay/bin/mapnames...not found Checking for program /soft/com/packages/absoft11.0/bin/mapnames...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/mapnames...not found Checking for program /soft/com/packages/intel/13/update5/bin/mapnames...not found Checking for program /soft/com/packages/nag-5.3.1/bin/mapnames...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/mapnames...not found Checking for program /homes/balay/mapnames...not found Checking for program /sandbox/balay/petsc.clone/bin/win32fe/mapnames...not found Checking for program /usr/lib/lightdm/lightdm/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/games/bib2html...not found Checking for program /mcs/bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /software/common/bin/bib2html...not found Checking for program /soft/apps/bin/bib2html...not found Checking for program /soft/gnu/bin/bib2html...not found Checking for program /soft/com/bin/bib2html...not found Checking for program /soft/adm/bin/bib2html...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/bib2html...not found Checking for program /homes/balay/bin/bib2html...not found Checking for program /soft/com/packages/absoft11.0/bin/bib2html...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/bib2html...not found Checking for program /soft/com/packages/intel/13/update5/bin/bib2html...not found Checking for program /soft/com/packages/nag-5.3.1/bin/bib2html...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/bib2html...not found Checking for program /homes/balay/bib2html...not found Checking for program /sandbox/balay/petsc.clone/bin/win32fe/bib2html...not found Checking for program /usr/lib/lightdm/lightdm/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /usr/bin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/bin/pdflatex" Bfort not found. Installing sowing for FortranStubs Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.sowing(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.sowing(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING in directory starting with sowing Could not locate an existing copy of sowing: [] Downloading sowing Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.16e.tar.gz to /sandbox/balay/petsc.clone/externalpackages/_d_sowing-1.1.16e.tar.gz Extracting /sandbox/balay/petsc.clone/externalpackages/_d_sowing-1.1.16e.tar.gz Executing: cd /sandbox/balay/petsc.clone/externalpackages; chmod -R a+r sowing-1.1.16e;find sowing-1.1.16e -type d -name "*" -exec chmod a+rx {} \; Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing-1.1.16e Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing-1.1.16e Have to rebuild sowing, /sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/sowing != /sandbox/balay/petsc.clone/arch-elemental/conf/sowing Executing: cd /sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e && ./configure --prefix=/sandbox/balay/petsc.clone/arch-elemental stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/bin/latex checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing default commands Executing: cd /sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e && make && make install && make clean stdout: (cd src/sys && make ) make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o ranlib ../../lib/libsowing.a make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/sys' (cd src/tohtml && make ) make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/tohtml' gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c tohtml.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c tex2html.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c search.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c texactio.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c rdaux.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c rdindx.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c label.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c scan.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c refmap.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c style.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c dimen.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c userdef.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c tabular.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c biblio.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c environ.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c math.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c rddefs.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c latexinfo.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c accent.c gcc -DPSPATH='"/sandbox/balay/petsc.clone/arch-elemental/bin/"' -DBMSOURCE='"/sandbox/balay/petsc.clone/arch-elemental/share/"' -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/tohtml' (cd src/bfort && make ) make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/bfort' gcc -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/bfort' (cd src/textfilt && make ) make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/textfilt' (cd src/doctext && make ) make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/doctext' (cd src/textfilt && make ) make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/textfilt' make[1]: Nothing to be done for `ALL'. make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/textfilt' (cd src/mapnames && make ) make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/mapnames' /usr/bin/install -c bin/bib2html /sandbox/balay/petsc.clone/arch-elemental/bin/bib2html /usr/bin/install -c src/doctext/doctext /sandbox/balay/petsc.clone/arch-elemental/bin/doctext /usr/bin/install -c src/doctext/doc2lt /sandbox/balay/petsc.clone/arch-elemental/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /sandbox/balay/petsc.clone/arch-elemental/bin/tohtml if [ "`cd bin && pwd`" != "`cd /sandbox/balay/petsc.clone/arch-elemental/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /sandbox/balay/petsc.clone/arch-elemental/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /sandbox/balay/petsc.clone/arch-elemental/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /sandbox/balay/petsc.clone/arch-elemental/bin/bfort /usr/bin/install -c src/mapnames/mapnames /sandbox/balay/petsc.clone/arch-elemental/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /sandbox/balay/petsc.clone/arch-elemental/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /sandbox/balay/petsc.clone/arch-elemental/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /sandbox/balay/petsc.clone/arch-elemental/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /sandbox/balay/petsc.clone/arch-elemental/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /sandbox/balay/petsc.clone/arch-elemental/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /sandbox/balay/petsc.clone/arch-elemental/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /sandbox/balay/petsc.clone/arch-elemental/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /sandbox/balay/petsc.clone/arch-elemental/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /sandbox/balay/petsc.clone/arch-elemental/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /sandbox/balay/petsc.clone/arch-elemental/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /sandbox/balay/petsc.clone/arch-elemental/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /sandbox/balay/petsc.clone/arch-elemental/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /sandbox/balay/petsc.clone/arch-elemental/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /sandbox/balay/petsc.clone/arch-elemental/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /sandbox/balay/petsc.clone/arch-elemental/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /sandbox/balay/petsc.clone/arch-elemental/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /sandbox/balay/petsc.clone/arch-elemental/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /sandbox/balay/petsc.clone/arch-elemental/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /sandbox/balay/petsc.clone/arch-elemental/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /sandbox/balay/petsc.clone/arch-elemental/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /sandbox/balay/petsc.clone/arch-elemental/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /sandbox/balay/petsc.clone/arch-elemental/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /sandbox/balay/petsc.clone/arch-elemental/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /sandbox/balay/petsc.clone/arch-elemental/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /sandbox/balay/petsc.clone/arch-elemental/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /sandbox/balay/petsc.clone/arch-elemental/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /sandbox/balay/petsc.clone/arch-elemental/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /sandbox/balay/petsc.clone/arch-elemental/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /sandbox/balay/petsc.clone/arch-elemental/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /sandbox/balay/petsc.clone/arch-elemental/share/man/man1/bfort.1 ;\ fi for dir in src docs ; do ( cd $dir && make clean ) ; done make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; make clean ) ; done make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/sys' rm -f *.o *~ make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/sys' make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/bfort' make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && make clean ) make[3]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/tohtml/testing' /bin/rm -rf test[1-9] test1[0-9] test2[0-9] /bin/rm -f test[1-9].html latex.err up.xbm down.xbm. next.xbm /bin/rm -f test1[0-9].html test2[0-9].html /bin/rm -f test[0-9].htm test[1-2][0-9].htm /bin/rm -f previous.xbm *.hux img*.xbm /bin/rm -f inplace subfiles /bin/rm -f *.ler *.aux *.out make[3]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/tohtml/testing' make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/tohtml' make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then make clean ; fi ) make[3]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/doctext/test' /bin/rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit make[3]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/doctext/test' /bin/rm -f doctext\ win32/debug/* make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/doctext' make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/textfilt' /bin/rm -f *.o *~ make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/textfilt' make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/mapnames' /bin/rm -f *.o *~ mapnames ccc make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/mapnames' make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/bib2html' rm -f tout.htm tout-bib.htm make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src/bib2html' make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/src' make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/docs' rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& make clean) make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/docs/doctext' rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/docs/doctext' make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Executing: cp -f /sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/sowing /sandbox/balay/petsc.clone/arch-elemental/conf/sowing Executing: cp -f /sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/sowing /sandbox/balay/petsc.clone/arch-elemental/conf/sowing Executing: cp -f /sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e/sowing /sandbox/balay/petsc.clone/arch-elemental/conf/sowing Defined make macro "BFORT " to "/sandbox/balay/petsc.clone/arch-elemental/bin/bfort" Defined make macro "DOCTEXT " to "/sandbox/balay/petsc.clone/arch-elemental/bin/doctext" Defined make macro "MAPNAMES " to "/sandbox/balay/petsc.clone/arch-elemental/bin/mapnames" Defined make macro "BIB2HTML " to "/sandbox/balay/petsc.clone/arch-elemental/bin/bib2html" Checking for program /usr/lib/lightdm/lightdm/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /usr/bin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/bin/pdflatex" Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download SOWING: ['/sandbox/balay/petsc.clone/arch-elemental/include', '/usr/include/mpich2'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.sowing(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.sowing(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C Running /sandbox/balay/petsc.clone/arch-elemental/bin/bfort to generate fortran stubs ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpe(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.mpe(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pami(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.pami(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default PETSc clone, checking for c2html Checking for program /usr/lib/lightdm/lightdm/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/games/c2html...not found Checking for program /mcs/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /software/common/bin/c2html...not found Checking for program /soft/apps/bin/c2html...not found Checking for program /soft/gnu/bin/c2html...not found Checking for program /soft/com/bin/c2html...not found Checking for program /soft/adm/bin/c2html...not found Checking for program /homes/balay/bin/linux-Ubuntu_12.04-x86_64/c2html...not found Checking for program /homes/balay/bin/c2html...not found Checking for program /soft/com/packages/absoft11.0/bin/c2html...not found Checking for program /soft/com/packages/MATLAB/R2013a/bin/c2html...not found Checking for program /soft/com/packages/intel/13/update5/bin/c2html...not found Checking for program /soft/com/packages/nag-5.3.1/bin/c2html...not found Checking for program /soft/com/packages/pgi/136/linux86-64/13.6/bin/c2html...not found Checking for program /homes/balay/c2html...not found Checking for program /sandbox/balay/petsc.clone/bin/win32fe/c2html...not found Installing c2html Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.c2html(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.c2html(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional c2html Looking for C2HTML in directory starting with c2html Could not locate an existing copy of c2html: ['sowing-1.1.16e'] Downloading c2html Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/c2html.tar.gz to /sandbox/balay/petsc.clone/externalpackages/_d_c2html.tar.gz Extracting /sandbox/balay/petsc.clone/externalpackages/_d_c2html.tar.gz Executing: cd /sandbox/balay/petsc.clone/externalpackages; chmod -R a+r c2html-0.9.4;find c2html-0.9.4 -type d -name "*" -exec chmod a+rx {} \; Looking for C2HTML in directory starting with c2html Found a copy of C2HTML in c2html-0.9.4 Looking for C2HTML in directory starting with c2html Found a copy of C2HTML in c2html-0.9.4 Have to rebuild c2html, /sandbox/balay/petsc.clone/externalpackages/c2html-0.9.4/c2html.args != /sandbox/balay/petsc.clone/arch-elemental/conf/c2html Checking for program /usr/lib/lightdm/lightdm/flex...not found Checking for program /usr/sbin/flex...not found Checking for program /usr/bin/flex...found Defined make macro "FLEX" to "flex" Checking for program /usr/lib/lightdm/lightdm/lex...not found Checking for program /usr/sbin/lex...not found Checking for program /usr/bin/lex...found Defined make macro "LEX" to "lex" Executing: cd /sandbox/balay/petsc.clone/externalpackages/c2html-0.9.4 && ./configure --prefix=/sandbox/balay/petsc.clone/arch-elemental --with-cc="mpicc" stdout: checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for executable suffix... checking for object suffix... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for a BSD compatible install... /usr/bin/install -c checking for flex... flex checking for yywrap in -lfl... yes checking lex output file root... lex.yy checking whether yytext is a pointer... yes checking whether make sets ${MAKE}... yes checking for yylex in -lfl... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for unistd.h... yes checking for getopt.h... yes checking for malloc.h... yes checking for gcc option to accept ANSI C... none needed checking for an ANSI C-conforming const... yes checking for uid_t in sys/types.h... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... (cached) yes checking for mode_t... yes checking for off_t... yes checking for pid_t... yes checking for size_t... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for getpagesize... yes checking for working mmap... yes checking for strftime... yes checking for strstr... yes checking for getopt... yes checking for popen... yes checking for fileno... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h Executing: cd /sandbox/balay/petsc.clone/externalpackages/c2html-0.9.4 && make && make install && make clean stdout: flex ./c2html.l gcc -O -I. -I. -DCOMPRESSION=1 -o c2html lex.yy.c ./mymain.c ./colors.c -lfl mkdir -p /sandbox/balay/petsc.clone/arch-elemental/man/man1 /sandbox/balay/petsc.clone/arch-elemental/doc/c2html /usr/bin/install -c -m 644 ./c2html.1 /sandbox/balay/petsc.clone/arch-elemental/man/man1/c2html.1 /usr/bin/install -c -m 644 ./AUTHORS /sandbox/balay/petsc.clone/arch-elemental/doc/c2html/AUTHORS /usr/bin/install -c -m 644 ./COPYING /sandbox/balay/petsc.clone/arch-elemental/doc/c2html/COPYING /usr/bin/install -c -m 644 ./NEWS /sandbox/balay/petsc.clone/arch-elemental/doc/c2html/NEWS /usr/bin/install -c -m 644 ./README /sandbox/balay/petsc.clone/arch-elemental/doc/c2html/README /usr/bin/install -c -m 644 ./c2html.lsm /sandbox/balay/petsc.clone/arch-elemental/doc/c2html/c2html.lsm Installing c2html to /sandbox/balay/petsc.clone/arch-elemental/bin mkdir -p /sandbox/balay/petsc.clone/arch-elemental/bin /usr/bin/install -c c2html /sandbox/balay/petsc.clone/arch-elemental/bin/c2html rm -rf *.o *~ lex.yy.c TAGS Executing: cp -f /sandbox/balay/petsc.clone/externalpackages/c2html-0.9.4/c2html.args /sandbox/balay/petsc.clone/arch-elemental/conf/c2html Defined make macro "C2HTML" to "/sandbox/balay/petsc.clone/arch-elemental/bin/c2html" Not checking for library in Download C2HTML: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download C2HTML: ['/sandbox/balay/petsc.clone/arch-elemental/include', '/usr/include/mpich2'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.c2html(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.c2html(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FFC(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.FFC(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ctetgen(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.ctetgen(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opengl(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.opengl(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.glut(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.glut(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.cuda(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.cuda(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.papi(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.papi(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opencl(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.opencl(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.viennacl(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.viennacl(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.valgrind(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.valgrind(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/include/mpich2'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/include/mpich2'] Checking include with compiler flags var CPPFLAGS ['/usr/include/mpich2'] Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.headers -I/usr/include/mpich2 /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/valgrind/valgrind.h" 1 3 4 # 95 "/usr/include/valgrind/valgrind.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 102 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 typedef __gnuc_va_list va_list; # 96 "/usr/include/valgrind/valgrind.h" 2 3 4 # 354 "/usr/include/valgrind/valgrind.h" 3 4 typedef struct { unsigned long long int nraddr; } OrigFn; # 3605 "/usr/include/valgrind/valgrind.h" 3 4 typedef enum { VG_USERREQ__RUNNING_ON_VALGRIND = 0x1001, VG_USERREQ__DISCARD_TRANSLATIONS = 0x1002, VG_USERREQ__CLIENT_CALL0 = 0x1101, VG_USERREQ__CLIENT_CALL1 = 0x1102, VG_USERREQ__CLIENT_CALL2 = 0x1103, VG_USERREQ__CLIENT_CALL3 = 0x1104, VG_USERREQ__COUNT_ERRORS = 0x1201, VG_USERREQ__GDB_MONITOR_COMMAND = 0x1202, VG_USERREQ__MALLOCLIKE_BLOCK = 0x1301, VG_USERREQ__RESIZEINPLACE_BLOCK = 0x130b, VG_USERREQ__FREELIKE_BLOCK = 0x1302, VG_USERREQ__CREATE_MEMPOOL = 0x1303, VG_USERREQ__DESTROY_MEMPOOL = 0x1304, VG_USERREQ__MEMPOOL_ALLOC = 0x1305, VG_USERREQ__MEMPOOL_FREE = 0x1306, VG_USERREQ__MEMPOOL_TRIM = 0x1307, VG_USERREQ__MOVE_MEMPOOL = 0x1308, VG_USERREQ__MEMPOOL_CHANGE = 0x1309, VG_USERREQ__MEMPOOL_EXISTS = 0x130a, # 3650 "/usr/include/valgrind/valgrind.h" 3 4 VG_USERREQ__PRINTF = 0x1401, VG_USERREQ__PRINTF_BACKTRACE = 0x1402, VG_USERREQ__PRINTF_VALIST_BY_REF = 0x1403, VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF = 0x1404, VG_USERREQ__STACK_REGISTER = 0x1501, VG_USERREQ__STACK_DEREGISTER = 0x1502, VG_USERREQ__STACK_CHANGE = 0x1503, VG_USERREQ__LOAD_PDB_DEBUGINFO = 0x1601, VG_USERREQ__MAP_IP_TO_SRCLOC = 0x1701, VG_USERREQ__CHANGE_ERR_DISABLEMENT = 0x1801 } Vg_ClientRequest; # 3707 "/usr/include/valgrind/valgrind.h" 3 4 static int VALGRIND_PRINTF(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs,format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }) ; __builtin_va_end(vargs); return (int)_qzz_res; } static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs,format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }) ; __builtin_va_end(vargs); return (int)_qzz_res; } # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Found header files ['valgrind/valgrind.h'] in ['/usr/include/mpich2'] Popping language C All intermediate test results are stored in /tmp/petsc-KqLK70/PETSc.packages.valgrind Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.packages.valgrind/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.packages.valgrind/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.packages.valgrind/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.packages.valgrind/conftest.c:6:1: warning: value computed is not used [-Wunused-value] Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Mathematica(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Mathematica(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.expat(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.expat(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pcbddc(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.pcbddc(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.P3Dlib(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.P3Dlib(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Suggar(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Suggar(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.java(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.java(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ams(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.ams(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.pthread(/sandbox/balay/petsc.clone/config/PETSc/packages/pthread.py:27) TESTING: configureLibrary from PETSc.packages.pthread(config/PETSc/packages/pthread.py:27) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Package specific search directory PTHREAD: ['libpthread.a'] ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library ['libpthread.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lpthread -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBPTHREAD" to "1" Popping language C Checking for headers Package specific search directory PTHREAD: ['/usr/include/mpich2'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/usr/include/mpich2'] Checking include with compiler flags var CPPFLAGS ['/usr/include/mpich2'] Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.headers -I/usr/include/mpich2 /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 23 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 74 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 97 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 120 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 203 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 26 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 30 "/usr/include/time.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 31 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; # 115 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 147 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 182 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 220 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 263 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 413 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 478 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 490 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 524 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 664 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 676 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 717 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 790 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (__const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 872 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 984 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1028 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1095 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1129 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); # 1143 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 Found header files ['pthread.h'] in ['/usr/include/mpich2'] Popping language C All intermediate test results are stored in /tmp/petsc-KqLK70/PETSc.packages.pthread Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c:6:12: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.headers /tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c" # 1 "/tmp/petsc-KqLK70/PETSc.packages.pthread/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/PETSc.packages.pthread/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 3 4 # 1 "/usr/include/linux/sysctl.h" 1 3 4 # 25 "/usr/include/linux/sysctl.h" 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 26 "/usr/include/linux/sysctl.h" 2 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 27 "/usr/include/linux/sysctl.h" 2 3 4 struct completion; struct __sysctl_args { int *name; int nlen; void *oldval; size_t *oldlenp; void *newval; size_t newlen; unsigned long __unused[4]; }; enum { CTL_KERN=1, CTL_VM=2, CTL_NET=3, CTL_PROC=4, CTL_FS=5, CTL_DEBUG=6, CTL_DEV=7, CTL_BUS=8, CTL_ABI=9, CTL_CPU=10, CTL_ARLAN=254, CTL_S390DBF=5677, CTL_SUNRPC=7249, CTL_PM=9899, CTL_FRV=9898, }; enum { CTL_BUS_ISA=1 }; enum { INOTIFY_MAX_USER_INSTANCES=1, INOTIFY_MAX_USER_WATCHES=2, INOTIFY_MAX_QUEUED_EVENTS=3 }; enum { KERN_OSTYPE=1, KERN_OSRELEASE=2, KERN_OSREV=3, KERN_VERSION=4, KERN_SECUREMASK=5, KERN_PROF=6, KERN_NODENAME=7, KERN_DOMAINNAME=8, KERN_PANIC=15, KERN_REALROOTDEV=16, KERN_SPARC_REBOOT=21, KERN_CTLALTDEL=22, KERN_PRINTK=23, KERN_NAMETRANS=24, KERN_PPC_HTABRECLAIM=25, KERN_PPC_ZEROPAGED=26, KERN_PPC_POWERSAVE_NAP=27, KERN_MODPROBE=28, KERN_SG_BIG_BUFF=29, KERN_ACCT=30, KERN_PPC_L2CR=31, KERN_RTSIGNR=32, KERN_RTSIGMAX=33, KERN_SHMMAX=34, KERN_MSGMAX=35, KERN_MSGMNB=36, KERN_MSGPOOL=37, KERN_SYSRQ=38, KERN_MAX_THREADS=39, KERN_RANDOM=40, KERN_SHMALL=41, KERN_MSGMNI=42, KERN_SEM=43, KERN_SPARC_STOP_A=44, KERN_SHMMNI=45, KERN_OVERFLOWUID=46, KERN_OVERFLOWGID=47, KERN_SHMPATH=48, KERN_HOTPLUG=49, KERN_IEEE_EMULATION_WARNINGS=50, KERN_S390_USER_DEBUG_LOGGING=51, KERN_CORE_USES_PID=52, KERN_TAINTED=53, KERN_CADPID=54, KERN_PIDMAX=55, KERN_CORE_PATTERN=56, KERN_PANIC_ON_OOPS=57, KERN_HPPA_PWRSW=58, KERN_HPPA_UNALIGNED=59, KERN_PRINTK_RATELIMIT=60, KERN_PRINTK_RATELIMIT_BURST=61, KERN_PTY=62, KERN_NGROUPS_MAX=63, KERN_SPARC_SCONS_PWROFF=64, KERN_HZ_TIMER=65, KERN_UNKNOWN_NMI_PANIC=66, KERN_BOOTLOADER_TYPE=67, KERN_RANDOMIZE=68, KERN_SETUID_DUMPABLE=69, KERN_SPIN_RETRY=70, KERN_ACPI_VIDEO_FLAGS=71, KERN_IA64_UNALIGNED=72, KERN_COMPAT_LOG=73, KERN_MAX_LOCK_DEPTH=74, KERN_NMI_WATCHDOG=75, KERN_PANIC_ON_NMI=76, }; enum { VM_UNUSED1=1, VM_UNUSED2=2, VM_UNUSED3=3, VM_UNUSED4=4, VM_OVERCOMMIT_MEMORY=5, VM_UNUSED5=6, VM_UNUSED7=7, VM_UNUSED8=8, VM_UNUSED9=9, VM_PAGE_CLUSTER=10, VM_DIRTY_BACKGROUND=11, VM_DIRTY_RATIO=12, VM_DIRTY_WB_CS=13, VM_DIRTY_EXPIRE_CS=14, VM_NR_PDFLUSH_THREADS=15, VM_OVERCOMMIT_RATIO=16, VM_PAGEBUF=17, VM_HUGETLB_PAGES=18, VM_SWAPPINESS=19, VM_LOWMEM_RESERVE_RATIO=20, VM_MIN_FREE_KBYTES=21, VM_MAX_MAP_COUNT=22, VM_LAPTOP_MODE=23, VM_BLOCK_DUMP=24, VM_HUGETLB_GROUP=25, VM_VFS_CACHE_PRESSURE=26, VM_LEGACY_VA_LAYOUT=27, VM_SWAP_TOKEN_TIMEOUT=28, VM_DROP_PAGECACHE=29, VM_PERCPU_PAGELIST_FRACTION=30, VM_ZONE_RECLAIM_MODE=31, VM_MIN_UNMAPPED=32, VM_PANIC_ON_OOM=33, VM_VDSO_ENABLED=34, VM_MIN_SLAB=35, }; enum { NET_CORE=1, NET_ETHER=2, NET_802=3, NET_UNIX=4, NET_IPV4=5, NET_IPX=6, NET_ATALK=7, NET_NETROM=8, NET_AX25=9, NET_BRIDGE=10, NET_ROSE=11, NET_IPV6=12, NET_X25=13, NET_TR=14, NET_DECNET=15, NET_ECONET=16, NET_SCTP=17, NET_LLC=18, NET_NETFILTER=19, NET_DCCP=20, NET_IRDA=412, }; enum { RANDOM_POOLSIZE=1, RANDOM_ENTROPY_COUNT=2, RANDOM_READ_THRESH=3, RANDOM_WRITE_THRESH=4, RANDOM_BOOT_ID=5, RANDOM_UUID=6 }; enum { PTY_MAX=1, PTY_NR=2 }; enum { BUS_ISA_MEM_BASE=1, BUS_ISA_PORT_BASE=2, BUS_ISA_PORT_SHIFT=3 }; enum { NET_CORE_WMEM_MAX=1, NET_CORE_RMEM_MAX=2, NET_CORE_WMEM_DEFAULT=3, NET_CORE_RMEM_DEFAULT=4, NET_CORE_MAX_BACKLOG=6, NET_CORE_FASTROUTE=7, NET_CORE_MSG_COST=8, NET_CORE_MSG_BURST=9, NET_CORE_OPTMEM_MAX=10, NET_CORE_HOT_LIST_LENGTH=11, NET_CORE_DIVERT_VERSION=12, NET_CORE_NO_CONG_THRESH=13, NET_CORE_NO_CONG=14, NET_CORE_LO_CONG=15, NET_CORE_MOD_CONG=16, NET_CORE_DEV_WEIGHT=17, NET_CORE_SOMAXCONN=18, NET_CORE_BUDGET=19, NET_CORE_AEVENT_ETIME=20, NET_CORE_AEVENT_RSEQTH=21, NET_CORE_WARNINGS=22, }; enum { NET_UNIX_DESTROY_DELAY=1, NET_UNIX_DELETE_DELAY=2, NET_UNIX_MAX_DGRAM_QLEN=3, }; enum { NET_NF_CONNTRACK_MAX=1, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_NF_CONNTRACK_UDP_TIMEOUT=10, NET_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_NF_CONNTRACK_BUCKETS=14, NET_NF_CONNTRACK_LOG_INVALID=15, NET_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_NF_CONNTRACK_TCP_LOOSE=17, NET_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_NF_CONNTRACK_COUNT=27, NET_NF_CONNTRACK_ICMPV6_TIMEOUT=28, NET_NF_CONNTRACK_FRAG6_TIMEOUT=29, NET_NF_CONNTRACK_FRAG6_LOW_THRESH=30, NET_NF_CONNTRACK_FRAG6_HIGH_THRESH=31, NET_NF_CONNTRACK_CHECKSUM=32, }; enum { NET_IPV4_FORWARD=8, NET_IPV4_DYNADDR=9, NET_IPV4_CONF=16, NET_IPV4_NEIGH=17, NET_IPV4_ROUTE=18, NET_IPV4_FIB_HASH=19, NET_IPV4_NETFILTER=20, NET_IPV4_TCP_TIMESTAMPS=33, NET_IPV4_TCP_WINDOW_SCALING=34, NET_IPV4_TCP_SACK=35, NET_IPV4_TCP_RETRANS_COLLAPSE=36, NET_IPV4_DEFAULT_TTL=37, NET_IPV4_AUTOCONFIG=38, NET_IPV4_NO_PMTU_DISC=39, NET_IPV4_TCP_SYN_RETRIES=40, NET_IPV4_IPFRAG_HIGH_THRESH=41, NET_IPV4_IPFRAG_LOW_THRESH=42, NET_IPV4_IPFRAG_TIME=43, NET_IPV4_TCP_MAX_KA_PROBES=44, NET_IPV4_TCP_KEEPALIVE_TIME=45, NET_IPV4_TCP_KEEPALIVE_PROBES=46, NET_IPV4_TCP_RETRIES1=47, NET_IPV4_TCP_RETRIES2=48, NET_IPV4_TCP_FIN_TIMEOUT=49, NET_IPV4_IP_MASQ_DEBUG=50, NET_TCP_SYNCOOKIES=51, NET_TCP_STDURG=52, NET_TCP_RFC1337=53, NET_TCP_SYN_TAILDROP=54, NET_TCP_MAX_SYN_BACKLOG=55, NET_IPV4_LOCAL_PORT_RANGE=56, NET_IPV4_ICMP_ECHO_IGNORE_ALL=57, NET_IPV4_ICMP_ECHO_IGNORE_BROADCASTS=58, NET_IPV4_ICMP_SOURCEQUENCH_RATE=59, NET_IPV4_ICMP_DESTUNREACH_RATE=60, NET_IPV4_ICMP_TIMEEXCEED_RATE=61, NET_IPV4_ICMP_PARAMPROB_RATE=62, NET_IPV4_ICMP_ECHOREPLY_RATE=63, NET_IPV4_ICMP_IGNORE_BOGUS_ERROR_RESPONSES=64, NET_IPV4_IGMP_MAX_MEMBERSHIPS=65, NET_TCP_TW_RECYCLE=66, NET_IPV4_ALWAYS_DEFRAG=67, NET_IPV4_TCP_KEEPALIVE_INTVL=68, NET_IPV4_INET_PEER_THRESHOLD=69, NET_IPV4_INET_PEER_MINTTL=70, NET_IPV4_INET_PEER_MAXTTL=71, NET_IPV4_INET_PEER_GC_MINTIME=72, NET_IPV4_INET_PEER_GC_MAXTIME=73, NET_TCP_ORPHAN_RETRIES=74, NET_TCP_ABORT_ON_OVERFLOW=75, NET_TCP_SYNACK_RETRIES=76, NET_TCP_MAX_ORPHANS=77, NET_TCP_MAX_TW_BUCKETS=78, NET_TCP_FACK=79, NET_TCP_REORDERING=80, NET_TCP_ECN=81, NET_TCP_DSACK=82, NET_TCP_MEM=83, NET_TCP_WMEM=84, NET_TCP_RMEM=85, NET_TCP_APP_WIN=86, NET_TCP_ADV_WIN_SCALE=87, NET_IPV4_NONLOCAL_BIND=88, NET_IPV4_ICMP_RATELIMIT=89, NET_IPV4_ICMP_RATEMASK=90, NET_TCP_TW_REUSE=91, NET_TCP_FRTO=92, NET_TCP_LOW_LATENCY=93, NET_IPV4_IPFRAG_SECRET_INTERVAL=94, NET_IPV4_IGMP_MAX_MSF=96, NET_TCP_NO_METRICS_SAVE=97, NET_TCP_DEFAULT_WIN_SCALE=105, NET_TCP_MODERATE_RCVBUF=106, NET_TCP_TSO_WIN_DIVISOR=107, NET_TCP_BIC_BETA=108, NET_IPV4_ICMP_ERRORS_USE_INBOUND_IFADDR=109, NET_TCP_CONG_CONTROL=110, NET_TCP_ABC=111, NET_IPV4_IPFRAG_MAX_DIST=112, NET_TCP_MTU_PROBING=113, NET_TCP_BASE_MSS=114, NET_IPV4_TCP_WORKAROUND_SIGNED_WINDOWS=115, NET_TCP_DMA_COPYBREAK=116, NET_TCP_SLOW_START_AFTER_IDLE=117, NET_CIPSOV4_CACHE_ENABLE=118, NET_CIPSOV4_CACHE_BUCKET_SIZE=119, NET_CIPSOV4_RBM_OPTFMT=120, NET_CIPSOV4_RBM_STRICTVALID=121, NET_TCP_AVAIL_CONG_CONTROL=122, NET_TCP_ALLOWED_CONG_CONTROL=123, NET_TCP_MAX_SSTHRESH=124, NET_TCP_FRTO_RESPONSE=125, }; enum { NET_IPV4_ROUTE_FLUSH=1, NET_IPV4_ROUTE_MIN_DELAY=2, NET_IPV4_ROUTE_MAX_DELAY=3, NET_IPV4_ROUTE_GC_THRESH=4, NET_IPV4_ROUTE_MAX_SIZE=5, NET_IPV4_ROUTE_GC_MIN_INTERVAL=6, NET_IPV4_ROUTE_GC_TIMEOUT=7, NET_IPV4_ROUTE_GC_INTERVAL=8, NET_IPV4_ROUTE_REDIRECT_LOAD=9, NET_IPV4_ROUTE_REDIRECT_NUMBER=10, NET_IPV4_ROUTE_REDIRECT_SILENCE=11, NET_IPV4_ROUTE_ERROR_COST=12, NET_IPV4_ROUTE_ERROR_BURST=13, NET_IPV4_ROUTE_GC_ELASTICITY=14, NET_IPV4_ROUTE_MTU_EXPIRES=15, NET_IPV4_ROUTE_MIN_PMTU=16, NET_IPV4_ROUTE_MIN_ADVMSS=17, NET_IPV4_ROUTE_SECRET_INTERVAL=18, NET_IPV4_ROUTE_GC_MIN_INTERVAL_MS=19, }; enum { NET_PROTO_CONF_ALL=-2, NET_PROTO_CONF_DEFAULT=-3 }; enum { NET_IPV4_CONF_FORWARDING=1, NET_IPV4_CONF_MC_FORWARDING=2, NET_IPV4_CONF_PROXY_ARP=3, NET_IPV4_CONF_ACCEPT_REDIRECTS=4, NET_IPV4_CONF_SECURE_REDIRECTS=5, NET_IPV4_CONF_SEND_REDIRECTS=6, NET_IPV4_CONF_SHARED_MEDIA=7, NET_IPV4_CONF_RP_FILTER=8, NET_IPV4_CONF_ACCEPT_SOURCE_ROUTE=9, NET_IPV4_CONF_BOOTP_RELAY=10, NET_IPV4_CONF_LOG_MARTIANS=11, NET_IPV4_CONF_TAG=12, NET_IPV4_CONF_ARPFILTER=13, NET_IPV4_CONF_MEDIUM_ID=14, NET_IPV4_CONF_NOXFRM=15, NET_IPV4_CONF_NOPOLICY=16, NET_IPV4_CONF_FORCE_IGMP_VERSION=17, NET_IPV4_CONF_ARP_ANNOUNCE=18, NET_IPV4_CONF_ARP_IGNORE=19, NET_IPV4_CONF_PROMOTE_SECONDARIES=20, NET_IPV4_CONF_ARP_ACCEPT=21, NET_IPV4_CONF_ARP_NOTIFY=22, }; enum { NET_IPV4_NF_CONNTRACK_MAX=1, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT=10, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_IPV4_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_IPV4_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_IPV4_NF_CONNTRACK_BUCKETS=14, NET_IPV4_NF_CONNTRACK_LOG_INVALID=15, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_IPV4_NF_CONNTRACK_TCP_LOOSE=17, NET_IPV4_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_IPV4_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_IPV4_NF_CONNTRACK_COUNT=27, NET_IPV4_NF_CONNTRACK_CHECKSUM=28, }; enum { NET_IPV6_CONF=16, NET_IPV6_NEIGH=17, NET_IPV6_ROUTE=18, NET_IPV6_ICMP=19, NET_IPV6_BINDV6ONLY=20, NET_IPV6_IP6FRAG_HIGH_THRESH=21, NET_IPV6_IP6FRAG_LOW_THRESH=22, NET_IPV6_IP6FRAG_TIME=23, NET_IPV6_IP6FRAG_SECRET_INTERVAL=24, NET_IPV6_MLD_MAX_MSF=25, }; enum { NET_IPV6_ROUTE_FLUSH=1, NET_IPV6_ROUTE_GC_THRESH=2, NET_IPV6_ROUTE_MAX_SIZE=3, NET_IPV6_ROUTE_GC_MIN_INTERVAL=4, NET_IPV6_ROUTE_GC_TIMEOUT=5, NET_IPV6_ROUTE_GC_INTERVAL=6, NET_IPV6_ROUTE_GC_ELASTICITY=7, NET_IPV6_ROUTE_MTU_EXPIRES=8, NET_IPV6_ROUTE_MIN_ADVMSS=9, NET_IPV6_ROUTE_GC_MIN_INTERVAL_MS=10 }; enum { NET_IPV6_FORWARDING=1, NET_IPV6_HOP_LIMIT=2, NET_IPV6_MTU=3, NET_IPV6_ACCEPT_RA=4, NET_IPV6_ACCEPT_REDIRECTS=5, NET_IPV6_AUTOCONF=6, NET_IPV6_DAD_TRANSMITS=7, NET_IPV6_RTR_SOLICITS=8, NET_IPV6_RTR_SOLICIT_INTERVAL=9, NET_IPV6_RTR_SOLICIT_DELAY=10, NET_IPV6_USE_TEMPADDR=11, NET_IPV6_TEMP_VALID_LFT=12, NET_IPV6_TEMP_PREFERED_LFT=13, NET_IPV6_REGEN_MAX_RETRY=14, NET_IPV6_MAX_DESYNC_FACTOR=15, NET_IPV6_MAX_ADDRESSES=16, NET_IPV6_FORCE_MLD_VERSION=17, NET_IPV6_ACCEPT_RA_DEFRTR=18, NET_IPV6_ACCEPT_RA_PINFO=19, NET_IPV6_ACCEPT_RA_RTR_PREF=20, NET_IPV6_RTR_PROBE_INTERVAL=21, NET_IPV6_ACCEPT_RA_RT_INFO_MAX_PLEN=22, NET_IPV6_PROXY_NDP=23, NET_IPV6_ACCEPT_SOURCE_ROUTE=25, __NET_IPV6_MAX }; enum { NET_IPV6_ICMP_RATELIMIT=1 }; enum { NET_NEIGH_MCAST_SOLICIT=1, NET_NEIGH_UCAST_SOLICIT=2, NET_NEIGH_APP_SOLICIT=3, NET_NEIGH_RETRANS_TIME=4, NET_NEIGH_REACHABLE_TIME=5, NET_NEIGH_DELAY_PROBE_TIME=6, NET_NEIGH_GC_STALE_TIME=7, NET_NEIGH_UNRES_QLEN=8, NET_NEIGH_PROXY_QLEN=9, NET_NEIGH_ANYCAST_DELAY=10, NET_NEIGH_PROXY_DELAY=11, NET_NEIGH_LOCKTIME=12, NET_NEIGH_GC_INTERVAL=13, NET_NEIGH_GC_THRESH1=14, NET_NEIGH_GC_THRESH2=15, NET_NEIGH_GC_THRESH3=16, NET_NEIGH_RETRANS_TIME_MS=17, NET_NEIGH_REACHABLE_TIME_MS=18, }; enum { NET_DCCP_DEFAULT=1, }; enum { NET_IPX_PPROP_BROADCASTING=1, NET_IPX_FORWARDING=2 }; enum { NET_LLC2=1, NET_LLC_STATION=2, }; enum { NET_LLC2_TIMEOUT=1, }; enum { NET_LLC_STATION_ACK_TIMEOUT=1, }; enum { NET_LLC2_ACK_TIMEOUT=1, NET_LLC2_P_TIMEOUT=2, NET_LLC2_REJ_TIMEOUT=3, NET_LLC2_BUSY_TIMEOUT=4, }; enum { NET_ATALK_AARP_EXPIRY_TIME=1, NET_ATALK_AARP_TICK_TIME=2, NET_ATALK_AARP_RETRANSMIT_LIMIT=3, NET_ATALK_AARP_RESOLVE_TIME=4 }; enum { NET_NETROM_DEFAULT_PATH_QUALITY=1, NET_NETROM_OBSOLESCENCE_COUNT_INITIALISER=2, NET_NETROM_NETWORK_TTL_INITIALISER=3, NET_NETROM_TRANSPORT_TIMEOUT=4, NET_NETROM_TRANSPORT_MAXIMUM_TRIES=5, NET_NETROM_TRANSPORT_ACKNOWLEDGE_DELAY=6, NET_NETROM_TRANSPORT_BUSY_DELAY=7, NET_NETROM_TRANSPORT_REQUESTED_WINDOW_SIZE=8, NET_NETROM_TRANSPORT_NO_ACTIVITY_TIMEOUT=9, NET_NETROM_ROUTING_CONTROL=10, NET_NETROM_LINK_FAILS_COUNT=11, NET_NETROM_RESET=12 }; enum { NET_AX25_IP_DEFAULT_MODE=1, NET_AX25_DEFAULT_MODE=2, NET_AX25_BACKOFF_TYPE=3, NET_AX25_CONNECT_MODE=4, NET_AX25_STANDARD_WINDOW=5, NET_AX25_EXTENDED_WINDOW=6, NET_AX25_T1_TIMEOUT=7, NET_AX25_T2_TIMEOUT=8, NET_AX25_T3_TIMEOUT=9, NET_AX25_IDLE_TIMEOUT=10, NET_AX25_N2=11, NET_AX25_PACLEN=12, NET_AX25_PROTOCOL=13, NET_AX25_DAMA_SLAVE_TIMEOUT=14 }; enum { NET_ROSE_RESTART_REQUEST_TIMEOUT=1, NET_ROSE_CALL_REQUEST_TIMEOUT=2, NET_ROSE_RESET_REQUEST_TIMEOUT=3, NET_ROSE_CLEAR_REQUEST_TIMEOUT=4, NET_ROSE_ACK_HOLD_BACK_TIMEOUT=5, NET_ROSE_ROUTING_CONTROL=6, NET_ROSE_LINK_FAIL_TIMEOUT=7, NET_ROSE_MAX_VCS=8, NET_ROSE_WINDOW_SIZE=9, NET_ROSE_NO_ACTIVITY_TIMEOUT=10 }; enum { NET_X25_RESTART_REQUEST_TIMEOUT=1, NET_X25_CALL_REQUEST_TIMEOUT=2, NET_X25_RESET_REQUEST_TIMEOUT=3, NET_X25_CLEAR_REQUEST_TIMEOUT=4, NET_X25_ACK_HOLD_BACK_TIMEOUT=5, NET_X25_FORWARD=6 }; enum { NET_TR_RIF_TIMEOUT=1 }; enum { NET_DECNET_NODE_TYPE = 1, NET_DECNET_NODE_ADDRESS = 2, NET_DECNET_NODE_NAME = 3, NET_DECNET_DEFAULT_DEVICE = 4, NET_DECNET_TIME_WAIT = 5, NET_DECNET_DN_COUNT = 6, NET_DECNET_DI_COUNT = 7, NET_DECNET_DR_COUNT = 8, NET_DECNET_DST_GC_INTERVAL = 9, NET_DECNET_CONF = 10, NET_DECNET_NO_FC_MAX_CWND = 11, NET_DECNET_MEM = 12, NET_DECNET_RMEM = 13, NET_DECNET_WMEM = 14, NET_DECNET_DEBUG_LEVEL = 255 }; enum { NET_DECNET_CONF_LOOPBACK = -2, NET_DECNET_CONF_DDCMP = -3, NET_DECNET_CONF_PPP = -4, NET_DECNET_CONF_X25 = -5, NET_DECNET_CONF_GRE = -6, NET_DECNET_CONF_ETHER = -7 }; enum { NET_DECNET_CONF_DEV_PRIORITY = 1, NET_DECNET_CONF_DEV_T1 = 2, NET_DECNET_CONF_DEV_T2 = 3, NET_DECNET_CONF_DEV_T3 = 4, NET_DECNET_CONF_DEV_FORWARDING = 5, NET_DECNET_CONF_DEV_BLKSIZE = 6, NET_DECNET_CONF_DEV_STATE = 7 }; enum { NET_SCTP_RTO_INITIAL = 1, NET_SCTP_RTO_MIN = 2, NET_SCTP_RTO_MAX = 3, NET_SCTP_RTO_ALPHA = 4, NET_SCTP_RTO_BETA = 5, NET_SCTP_VALID_COOKIE_LIFE = 6, NET_SCTP_ASSOCIATION_MAX_RETRANS = 7, NET_SCTP_PATH_MAX_RETRANS = 8, NET_SCTP_MAX_INIT_RETRANSMITS = 9, NET_SCTP_HB_INTERVAL = 10, NET_SCTP_PRESERVE_ENABLE = 11, NET_SCTP_MAX_BURST = 12, NET_SCTP_ADDIP_ENABLE = 13, NET_SCTP_PRSCTP_ENABLE = 14, NET_SCTP_SNDBUF_POLICY = 15, NET_SCTP_SACK_TIMEOUT = 16, NET_SCTP_RCVBUF_POLICY = 17, }; enum { NET_BRIDGE_NF_CALL_ARPTABLES = 1, NET_BRIDGE_NF_CALL_IPTABLES = 2, NET_BRIDGE_NF_CALL_IP6TABLES = 3, NET_BRIDGE_NF_FILTER_VLAN_TAGGED = 4, NET_BRIDGE_NF_FILTER_PPPOE_TAGGED = 5, }; enum { NET_IRDA_DISCOVERY=1, NET_IRDA_DEVNAME=2, NET_IRDA_DEBUG=3, NET_IRDA_FAST_POLL=4, NET_IRDA_DISCOVERY_SLOTS=5, NET_IRDA_DISCOVERY_TIMEOUT=6, NET_IRDA_SLOT_TIMEOUT=7, NET_IRDA_MAX_BAUD_RATE=8, NET_IRDA_MIN_TX_TURN_TIME=9, NET_IRDA_MAX_TX_DATA_SIZE=10, NET_IRDA_MAX_TX_WINDOW=11, NET_IRDA_MAX_NOREPLY_TIME=12, NET_IRDA_WARN_NOREPLY_TIME=13, NET_IRDA_LAP_KEEPALIVE_TIME=14, }; enum { FS_NRINODE=1, FS_STATINODE=2, FS_MAXINODE=3, FS_NRDQUOT=4, FS_MAXDQUOT=5, FS_NRFILE=6, FS_MAXFILE=7, FS_DENTRY=8, FS_NRSUPER=9, FS_MAXSUPER=10, FS_OVERFLOWUID=11, FS_OVERFLOWGID=12, FS_LEASES=13, FS_DIR_NOTIFY=14, FS_LEASE_TIME=15, FS_DQSTATS=16, FS_XFS=17, FS_AIO_NR=18, FS_AIO_MAX_NR=19, FS_INOTIFY=20, FS_OCFS2=988, }; enum { FS_DQ_LOOKUPS = 1, FS_DQ_DROPS = 2, FS_DQ_READS = 3, FS_DQ_WRITES = 4, FS_DQ_CACHE_HITS = 5, FS_DQ_ALLOCATED = 6, FS_DQ_FREE = 7, FS_DQ_SYNCS = 8, FS_DQ_WARNINGS = 9, }; enum { DEV_CDROM=1, DEV_HWMON=2, DEV_PARPORT=3, DEV_RAID=4, DEV_MAC_HID=5, DEV_SCSI=6, DEV_IPMI=7, }; enum { DEV_CDROM_INFO=1, DEV_CDROM_AUTOCLOSE=2, DEV_CDROM_AUTOEJECT=3, DEV_CDROM_DEBUG=4, DEV_CDROM_LOCK=5, DEV_CDROM_CHECK_MEDIA=6 }; enum { DEV_PARPORT_DEFAULT=-3 }; enum { DEV_RAID_SPEED_LIMIT_MIN=1, DEV_RAID_SPEED_LIMIT_MAX=2 }; enum { DEV_PARPORT_DEFAULT_TIMESLICE=1, DEV_PARPORT_DEFAULT_SPINTIME=2 }; enum { DEV_PARPORT_SPINTIME=1, DEV_PARPORT_BASE_ADDR=2, DEV_PARPORT_IRQ=3, DEV_PARPORT_DMA=4, DEV_PARPORT_MODES=5, DEV_PARPORT_DEVICES=6, DEV_PARPORT_AUTOPROBE=16 }; enum { DEV_PARPORT_DEVICES_ACTIVE=-3, }; enum { DEV_PARPORT_DEVICE_TIMESLICE=1, }; enum { DEV_MAC_HID_KEYBOARD_SENDS_LINUX_KEYCODES=1, DEV_MAC_HID_KEYBOARD_LOCK_KEYCODES=2, DEV_MAC_HID_MOUSE_BUTTON_EMULATION=3, DEV_MAC_HID_MOUSE_BUTTON2_KEYCODE=4, DEV_MAC_HID_MOUSE_BUTTON3_KEYCODE=5, DEV_MAC_HID_ADB_MOUSE_SENDS_KEYCODES=6 }; enum { DEV_SCSI_LOGGING_LEVEL=1, }; enum { DEV_IPMI_POWEROFF_POWERCYCLE=1, }; enum { ABI_DEFHANDLER_COFF=1, ABI_DEFHANDLER_ELF=2, ABI_DEFHANDLER_LCALL7=3, ABI_DEFHANDLER_LIBCSO=4, ABI_TRACE=5, ABI_FAKE_UTSNAME=6, }; # 45 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 # 64 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 3 4 extern int sysctl (int *__name, int __nlen, void *__oldval, size_t *__oldlenp, void *__newval, size_t __newlen) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-KqLK70/PETSc.packages.pthread/conftest.c" 2 Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from PETSc.packages.pthread(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.pthread(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pthreadclasses(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.pthreadclasses(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.openmp(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.openmp(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/sandbox/balay/petsc.clone/config/PETSc/packages/Matlab.py:36) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(config/PETSc/packages/Matlab.py:36) ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MatlabEngine(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.MatlabEngine(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Generator(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Generator(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.yaml(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.yaml(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.server(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.server(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PTScotch(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.PTScotch(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.cmake(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.cmake(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional cmake Looking for CMAKE in directory starting with cmake Could not locate an existing copy of cmake: ['c2html-0.9.4', 'sowing-1.1.16e'] Downloading cmake Downloading http://www.cmake.org/files/v2.8/cmake-2.8.10.2.tar.gz to /sandbox/balay/petsc.clone/externalpackages/_d_cmake-2.8.10.2.tar.gz Extracting /sandbox/balay/petsc.clone/externalpackages/_d_cmake-2.8.10.2.tar.gz Executing: cd /sandbox/balay/petsc.clone/externalpackages; chmod -R a+r cmake-2.8.10.2;find cmake-2.8.10.2 -type d -name "*" -exec chmod a+rx {} \; Looking for CMAKE in directory starting with cmake Found a copy of CMAKE in cmake-2.8.10.2 Looking for CMAKE in directory starting with cmake Found a copy of CMAKE in cmake-2.8.10.2 Have to rebuild cmake, /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/cmake.args != /sandbox/balay/petsc.clone/arch-elemental/conf/cmake =============================================================================== Configuring CMake; this may take several minutes =============================================================================== Executing: cd /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2 && ./configure --prefix=/sandbox/balay/petsc.clone/arch-elemental stdout: --------------------------------------------- CMake 2.8.10.2, Copyright 2000-2012 Kitware, Inc. Found GNU toolchain C compiler on this system is: gcc C++ compiler on this system is: g++ Makefile processor on this system is: make g++ is GNU compiler g++ has setenv g++ has unsetenv g++ does not have environ in stdlib.h g++ has STL in std:: namespace g++ has ANSI streams g++ has streams in std:: namespace g++ has sstream g++ has operator!=(string, char*) g++ has stl iterator_traits g++ has standard template allocator g++ has allocator<>::rebind<> g++ does not have non-standard allocator<>::max_size argument g++ has stl containers supporting allocator objects g++ has header cstddef g++ requires template friends to use <> g++ supports member templates g++ has standard template specialization syntax g++ has argument dependent lookup g++ has struct stat with st_mtim member g++ has ios::binary openmode g++ has ANSI for scoping --------------------------------------------- g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmStandardIncludes.cxx -o cmStandardIncludes.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmake.cxx -o cmake.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmakemain.cxx -o cmakemain.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmakewizard.cxx -o cmakewizard.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmCommandArgumentLexer.cxx -o cmCommandArgumentLexer.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmCommandArgumentParser.cxx -o cmCommandArgumentParser.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmCommandArgumentParserHelper.cxx -o cmCommandArgumentParserHelper.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmDefinitions.cxx -o cmDefinitions.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmDepends.cxx -o cmDepends.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmDependsC.cxx -o cmDependsC.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmDocumentationFormatter.cxx -o cmDocumentationFormatter.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmDocumentationFormatterText.cxx -o cmDocumentationFormatterText.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmPolicies.cxx -o cmPolicies.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmProperty.cxx -o cmProperty.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmPropertyMap.cxx -o cmPropertyMap.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmPropertyDefinition.cxx -o cmPropertyDefinition.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmPropertyDefinitionMap.cxx -o cmPropertyDefinitionMap.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmMakeDepend.cxx -o cmMakeDepend.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmMakefile.cxx -o cmMakefile.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmExportFileGenerator.cxx -o cmExportFileGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmExportInstallFileGenerator.cxx -o cmExportInstallFileGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmExportSet.cxx -o cmExportSet.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmExportSetMap.cxx -o cmExportSetMap.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmInstallDirectoryGenerator.cxx -o cmInstallDirectoryGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGeneratedFileStream.cxx -o cmGeneratedFileStream.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGeneratorTarget.cxx -o cmGeneratorTarget.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGeneratorExpressionDAGChecker.cxx -o cmGeneratorExpressionDAGChecker.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGeneratorExpressionEvaluator.cxx -o cmGeneratorExpressionEvaluator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGeneratorExpressionLexer.cxx -o cmGeneratorExpressionLexer.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGeneratorExpressionParser.cxx -o cmGeneratorExpressionParser.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGeneratorExpression.cxx -o cmGeneratorExpression.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGlobalGenerator.cxx -o cmGlobalGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmLocalGenerator.cxx -o cmLocalGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmInstallGenerator.cxx -o cmInstallGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmInstallExportGenerator.cxx -o cmInstallExportGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmInstallFilesGenerator.cxx -o cmInstallFilesGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmInstallScriptGenerator.cxx -o cmInstallScriptGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmInstallTargetGenerator.cxx -o cmInstallTargetGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmScriptGenerator.cxx -o cmScriptGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmSourceFile.cxx -o cmSourceFile.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmSourceFileLocation.cxx -o cmSourceFileLocation.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmSystemTools.cxx -o cmSystemTools.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmTestGenerator.cxx -o cmTestGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmVersion.cxx -o cmVersion.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmFileTimeComparison.cxx -o cmFileTimeComparison.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGlobalUnixMakefileGenerator3.cxx -o cmGlobalUnixMakefileGenerator3.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmLocalUnixMakefileGenerator3.cxx -o cmLocalUnixMakefileGenerator3.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmMakefileExecutableTargetGenerator.cxx -o cmMakefileExecutableTargetGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmMakefileLibraryTargetGenerator.cxx -o cmMakefileLibraryTargetGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmMakefileTargetGenerator.cxx -o cmMakefileTargetGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmMakefileUtilityTargetGenerator.cxx -o cmMakefileUtilityTargetGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmOSXBundleGenerator.cxx -o cmOSXBundleGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmNewLineStyle.cxx -o cmNewLineStyle.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmBootstrapCommands.cxx -o cmBootstrapCommands.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmCommands.cxx -o cmCommands.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmTarget.cxx -o cmTarget.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmTest.cxx -o cmTest.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmCustomCommand.cxx -o cmCustomCommand.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmCustomCommandGenerator.cxx -o cmCustomCommandGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmDocumentVariables.cxx -o cmDocumentVariables.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmCacheManager.cxx -o cmCacheManager.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmListFileCache.cxx -o cmListFileCache.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmComputeLinkDepends.cxx -o cmComputeLinkDepends.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmComputeLinkInformation.cxx -o cmComputeLinkInformation.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmOrderDirectories.cxx -o cmOrderDirectories.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmComputeTargetDepends.cxx -o cmComputeTargetDepends.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmComputeComponentGraph.cxx -o cmComputeComponentGraph.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmExprLexer.cxx -o cmExprLexer.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmExprParser.cxx -o cmExprParser.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmExprParserHelper.cxx -o cmExprParserHelper.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmGlobalNinjaGenerator.cxx -o cmGlobalNinjaGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmLocalNinjaGenerator.cxx -o cmLocalNinjaGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmNinjaTargetGenerator.cxx -o cmNinjaTargetGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmNinjaNormalTargetGenerator.cxx -o cmNinjaNormalTargetGenerator.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmNinjaUtilityTargetGenerator.cxx -o cmNinjaUtilityTargetGenerator.o gcc -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/cmListFileLexer.c -o cmListFileLexer.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -DKWSYS_NAMESPACE=cmsys -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/kwsys/Directory.cxx -o Directory.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -DKWSYS_NAMESPACE=cmsys -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/kwsys/Glob.cxx -o Glob.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -DKWSYS_NAMESPACE=cmsys -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/kwsys/RegularExpression.cxx -o RegularExpression.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -DKWSYS_NAMESPACE=cmsys -DKWSYS_CXX_HAS_SETENV=1 -DKWSYS_CXX_HAS_UNSETENV=1 -DKWSYS_CXX_HAS_ENVIRON_IN_STDLIB_H=0 -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/kwsys/SystemTools.cxx -o SystemTools.o gcc -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -DKWSYS_NAMESPACE=cmsys -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/kwsys/ProcessUNIX.c -o ProcessUNIX.o gcc -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -DKWSYS_NAMESPACE=cmsys -DKWSYS_STRING_C -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/kwsys/String.c -o String.o gcc -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -DKWSYS_NAMESPACE=cmsys -c /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source/kwsys/System.c -o System.o g++ -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Source -I/sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/Bootstrap.cmk cmStandardIncludes.o cmake.o cmakemain.o cmakewizard.o cmCommandArgumentLexer.o cmCommandArgumentParser.o cmCommandArgumentParserHelper.o cmDefinitions.o cmDepends.o cmDependsC.o cmDocumentationFormatter.o cmDocumentationFormatterText.o cmPolicies.o cmProperty.o cmPropertyMap.o cmPropertyDefinition.o cmPropertyDefinitionMap.o cmMakeDepend.o cmMakefile.o cmExportFileGenerator.o cmExportInstallFileGenerator.o cmExportSet.o cmExportSetMap.o cmInstallDirectoryGenerator.o cmGeneratedFileStream.o cmGeneratorTarget.o cmGeneratorExpressionDAGChecker.o cmGeneratorExpressionEvaluator.o cmGeneratorExpressionLexer.o cmGeneratorExpressionParser.o cmGeneratorExpression.o cmGlobalGenerator.o cmLocalGenerator.o cmInstallGenerator.o cmInstallExportGenerator.o cmInstallFilesGenerator.o cmInstallScriptGenerator.o cmInstallTargetGenerator.o cmScriptGenerator.o cmSourceFile.o cmSourceFileLocation.o cmSystemTools.o cmTestGenerator.o cmVersion.o cmFileTimeComparison.o cmGlobalUnixMakefileGenerator3.o cmLocalUnixMakefileGenerator3.o cmMakefileExecutableTargetGenerator.o cmMakefileLibraryTargetGenerator.o cmMakefileTargetGenerator.o cmMakefileUtilityTargetGenerator.o cmOSXBundleGenerator.o cmNewLineStyle.o cmBootstrapCommands.o cmCommands.o cmTarget.o cmTest.o cmCustomCommand.o cmCustomCommandGenerator.o cmDocumentVariables.o cmCacheManager.o cmListFileCache.o cmComputeLinkDepends.o cmComputeLinkInformation.o cmOrderDirectories.o cmComputeTargetDepends.o cmComputeComponentGraph.o cmExprLexer.o cmExprParser.o cmExprParserHelper.o cmGlobalNinjaGenerator.o cmLocalNinjaGenerator.o cmNinjaTargetGenerator.o cmNinjaNormalTargetGenerator.o cmNinjaUtilityTargetGenerator.o cmListFileLexer.o Directory.o Glob.o RegularExpression.o SystemTools.o ProcessUNIX.o String.o System.o -o cmake -- The C compiler identification is GNU 4.6.3 -- The CXX compiler identification is GNU 4.6.3 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Check for STD namespace -- Check for STD namespace - found -- Check for ANSI scope -- Check for ANSI scope - found -- Check for sstream -- Check for sstream - found -- Looking for unsetenv -- Looking for unsetenv - found -- Looking for environ -- Looking for environ - not found -- Checking whether header cstdio is available -- Checking whether header cstdio is available - yes -- Checking for Large File Support -- Checking for Large File Support - yes -- Checking whether STL classes are in std namespace -- Checking whether STL classes are in std namespace - yes -- Checking whether ANSI stream headers are available -- Checking whether ANSI stream headers are available - yes -- Checking whether ANSI streams are in std namespace -- Checking whether ANSI streams are in std namespace - yes -- Checking whether ANSI string stream is available -- Checking whether ANSI string stream is available - yes -- Checking whether header cstddef is available -- Checking whether header cstddef is available - yes -- Checking whether stl string has operator!= for char* -- Checking whether stl string has operator!= for char* - yes -- Checking whether stl has iterator_traits -- Checking whether stl has iterator_traits - yes -- Checking whether stl has standard template allocator -- Checking whether stl has standard template allocator - yes -- Checking for rebind member of stl allocator -- Checking for rebind member of stl allocator - yes -- Checking for non-standard argument to stl allocator<>::max_size -- Checking for non-standard argument to stl allocator<>::max_size - no -- Checking whether stl containers support allocator objects. -- Checking whether stl containers support allocator objects. - yes -- Checking whether ios has binary openmode -- Checking whether ios has binary openmode - yes -- Checking whether "<>" is needed for template friends -- Checking whether "<>" is needed for template friends - yes -- Checking for member template support -- Checking for member template support - yes -- Checking for standard template specialization syntax -- Checking for standard template specialization syntax - yes -- Checking whether argument dependent lookup is supported -- Checking whether argument dependent lookup is supported - yes -- Checking whether struct stat has st_mtim member -- Checking whether struct stat has st_mtim member - yes -- Checking whether C++ compiler has 'long long' -- Checking whether C++ compiler has 'long long' - yes -- Checking whether C++ compiler has '__int64' -- Checking whether C++ compiler has '__int64' - no -- Checking for C type size macros -- Checking for C type size macros - compiled -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of char -- Check size of char - done -- Check size of __int64 -- Check size of __int64 - failed -- Checking whether char is signed -- Checking whether char is signed - yes -- Checking if istream supports long long -- Checking if istream supports long long - yes -- Checking if ostream supports long long -- Checking if ostream supports long long - yes -- Checking whether C compiler has ptrdiff_t in stddef.h -- Checking whether C compiler has ptrdiff_t in stddef.h - yes -- Checking whether C compiler has ssize_t in unistd.h -- Checking whether C compiler has ssize_t in unistd.h - yes -- Checking whether CXX compiler has setenv -- Checking whether CXX compiler has setenv - yes -- Checking whether CXX compiler has unsetenv -- Checking whether CXX compiler has unsetenv - yes -- Checking whether CXX compiler has environ in stdlib.h -- Checking whether CXX compiler has environ in stdlib.h - no -- Looking for connect in socket;dl -- Looking for connect in socket;dl - not found -- Looking for gethostbyname in c -- Looking for gethostbyname in c - found -- Looking for recv in network;dl -- Looking for recv in network;dl - not found -- Looking for getch in ws2_32;dl -- Looking for getch in ws2_32;dl - not found -- Looking for getch in winmm;dl -- Looking for getch in winmm;dl - not found -- Looking for idna_to_ascii_lz in idn;dl -- Looking for idna_to_ascii_lz in idn;dl - found -- Looking for dlopen in dl;idn -- Looking for dlopen in dl;idn - found -- Looking for process.h -- Looking for process.h - not found -- Looking for features.h -- Looking for features.h - found -- Looking for include file stdio.h -- Looking for include file stdio.h - found -- Looking for 4 include files stdio.h, ..., inttypes.h -- Looking for 4 include files stdio.h, ..., inttypes.h - found -- Looking for 5 include files stdio.h, ..., alloca.h -- Looking for 5 include files stdio.h, ..., alloca.h - found -- Looking for 6 include files stdio.h, ..., arpa/inet.h -- Looking for 6 include files stdio.h, ..., arpa/inet.h - found -- Looking for 7 include files stdio.h, ..., dlfcn.h -- Looking for 7 include files stdio.h, ..., dlfcn.h - found -- Looking for 8 include files stdio.h, ..., fcntl.h -- Looking for 8 include files stdio.h, ..., fcntl.h - found -- Looking for 9 include files stdio.h, ..., malloc.h -- Looking for 9 include files stdio.h, ..., malloc.h - found -- Looking for 10 include files stdio.h, ..., memory.h -- Looking for 10 include files stdio.h, ..., memory.h - found -- Looking for 11 include files stdio.h, ..., netdb.h -- Looking for 11 include files stdio.h, ..., netdb.h - found -- Looking for 12 include files stdio.h, ..., sys/poll.h -- Looking for 12 include files stdio.h, ..., sys/poll.h - found -- Looking for 13 include files stdio.h, ..., assert.h -- Looking for 13 include files stdio.h, ..., assert.h - found -- Looking for 14 include files stdio.h, ..., limits.h -- Looking for 14 include files stdio.h, ..., limits.h - found -- Looking for 15 include files stdio.h, ..., sys/socket.h -- Looking for 15 include files stdio.h, ..., sys/socket.h - found -- Looking for 16 include files stdio.h, ..., netinet/in.h -- Looking for 16 include files stdio.h, ..., netinet/in.h - found -- Looking for 17 include files stdio.h, ..., net/if.h -- Looking for 17 include files stdio.h, ..., net/if.h - found -- Looking for 18 include files stdio.h, ..., netinet/if_ether.h -- Looking for 18 include files stdio.h, ..., netinet/if_ether.h - found -- Looking for 19 include files stdio.h, ..., netinet/tcp.h -- Looking for 19 include files stdio.h, ..., netinet/tcp.h - found -- Looking for 20 include files stdio.h, ..., sys/select.h -- Looking for 20 include files stdio.h, ..., sys/select.h - found -- Looking for 21 include files stdio.h, ..., utime.h -- Looking for 21 include files stdio.h, ..., utime.h - found -- Looking for 23 include files stdio.h, ..., pwd.h -- Looking for 23 include files stdio.h, ..., pwd.h - found -- Looking for 24 include files stdio.h, ..., sgtty.h -- Looking for 24 include files stdio.h, ..., sgtty.h - found -- Looking for 26 include files stdio.h, ..., stdlib.h -- Looking for 26 include files stdio.h, ..., stdlib.h - found -- Looking for 27 include files stdio.h, ..., string.h -- Looking for 27 include files stdio.h, ..., string.h - found -- Looking for 28 include files stdio.h, ..., strings.h -- Looking for 28 include files stdio.h, ..., strings.h - found -- Looking for 29 include files stdio.h, ..., sys/param.h -- Looking for 29 include files stdio.h, ..., sys/param.h - found -- Looking for 30 include files stdio.h, ..., sys/stat.h -- Looking for 30 include files stdio.h, ..., sys/stat.h - found -- Looking for 31 include files stdio.h, ..., sys/time.h -- Looking for 31 include files stdio.h, ..., sys/time.h - found -- Looking for 32 include files stdio.h, ..., sys/resource.h -- Looking for 32 include files stdio.h, ..., sys/resource.h - found -- Looking for 33 include files stdio.h, ..., termios.h -- Looking for 33 include files stdio.h, ..., termios.h - found -- Looking for 34 include files stdio.h, ..., termio.h -- Looking for 34 include files stdio.h, ..., termio.h - found -- Looking for 35 include files stdio.h, ..., io.h -- Looking for 35 include files stdio.h, ..., io.h - not found -- Looking for 35 include files stdio.h, ..., time.h -- Looking for 35 include files stdio.h, ..., time.h - found -- Looking for 36 include files stdio.h, ..., unistd.h -- Looking for 36 include files stdio.h, ..., unistd.h - found -- Looking for 37 include files stdio.h, ..., sys/utime.h -- Looking for 37 include files stdio.h, ..., sys/utime.h - not found -- Looking for 37 include files stdio.h, ..., sockio.h -- Looking for 37 include files stdio.h, ..., sockio.h - not found -- Looking for 37 include files stdio.h, ..., sys/sockio.h -- Looking for 37 include files stdio.h, ..., sys/sockio.h - not found -- Looking for 37 include files stdio.h, ..., x509.h -- Looking for 37 include files stdio.h, ..., x509.h - not found -- Looking for 37 include files stdio.h, ..., locale.h -- Looking for 37 include files stdio.h, ..., locale.h - found -- Looking for 38 include files stdio.h, ..., setjmp.h -- Looking for 38 include files stdio.h, ..., setjmp.h - found -- Looking for 39 include files stdio.h, ..., signal.h -- Looking for 39 include files stdio.h, ..., signal.h - found -- Looking for 40 include files stdio.h, ..., sys/ioctl.h -- Looking for 40 include files stdio.h, ..., sys/ioctl.h - found -- Looking for 41 include files stdio.h, ..., sys/utsname.h -- Looking for 41 include files stdio.h, ..., sys/utsname.h - found -- Looking for 42 include files stdio.h, ..., idn-free.h -- Looking for 42 include files stdio.h, ..., idn-free.h - found -- Looking for 43 include files stdio.h, ..., idna.h -- Looking for 43 include files stdio.h, ..., idna.h - found -- Looking for 44 include files stdio.h, ..., tld.h -- Looking for 44 include files stdio.h, ..., tld.h - found -- Looking for 45 include files stdio.h, ..., arpa/tftp.h -- Looking for 45 include files stdio.h, ..., arpa/tftp.h - found -- Looking for 46 include files stdio.h, ..., errno.h -- Looking for 46 include files stdio.h, ..., errno.h - found -- Looking for 47 include files stdio.h, ..., libgen.h -- Looking for 47 include files stdio.h, ..., libgen.h - found -- Looking for 48 include files stdio.h, ..., sys/filio.h -- Looking for 48 include files stdio.h, ..., sys/filio.h - not found -- Check size of size_t -- Check size of size_t - done -- Check size of ssize_t -- Check size of ssize_t - done -- Check size of long long -- Check size of long long - done -- Check size of long -- Check size of long - done -- Check size of __int64 -- Check size of __int64 - failed -- Check size of time_t -- Check size of time_t - done -- Looking for basename -- Looking for basename - found -- Looking for socket -- Looking for socket - found -- Looking for poll -- Looking for poll - found -- Looking for select -- Looking for select - found -- Looking for strdup -- Looking for strdup - found -- Looking for strstr -- Looking for strstr - found -- Looking for strtok_r -- Looking for strtok_r - found -- Looking for strftime -- Looking for strftime - found -- Looking for uname -- Looking for uname - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for stricmp -- Looking for stricmp - not found -- Looking for strcmpi -- Looking for strcmpi - not found -- Looking for strncmpi -- Looking for strncmpi - not found -- Looking for gethostbyaddr -- Looking for gethostbyaddr - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for inet_addr -- Looking for inet_addr - found -- Looking for inet_pton -- Looking for inet_pton - found -- Looking for inet_ntoa -- Looking for inet_ntoa - found -- Looking for inet_ntoa_r -- Looking for inet_ntoa_r - not found -- Looking for tcsetattr -- Looking for tcsetattr - found -- Looking for tcgetattr -- Looking for tcgetattr - found -- Looking for perror -- Looking for perror - found -- Looking for closesocket -- Looking for closesocket - not found -- Looking for setvbuf -- Looking for setvbuf - found -- Looking for sigsetjmp -- Looking for sigsetjmp - found -- Looking for getpass_r -- Looking for getpass_r - not found -- Looking for strlcat -- Looking for strlcat - not found -- Looking for getpwuid -- Looking for getpwuid - found -- Looking for geteuid -- Looking for geteuid - found -- Looking for utime -- Looking for utime - found -- Looking for gmtime_r -- Looking for gmtime_r - found -- Looking for localtime_r -- Looking for localtime_r - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for gethostbyname_r -- Looking for gethostbyname_r - found -- Looking for gethostbyaddr_r -- Looking for gethostbyaddr_r - found -- Looking for signal -- Looking for signal - found -- Looking for SIGALRM -- Looking for SIGALRM - found -- Looking for strtoll -- Looking for strtoll - found -- Looking for _strtoi64 -- Looking for _strtoi64 - not found -- Looking for strerror_r -- Looking for strerror_r - found -- Looking for siginterrupt -- Looking for siginterrupt - found -- Looking for fork -- Looking for fork - found -- Looking for pipe -- Looking for pipe - found -- Looking for ftruncate -- Looking for ftruncate - found -- Looking for getprotobyname -- Looking for getprotobyname - found -- Looking for getrlimit -- Looking for getrlimit - found -- Looking for idn_free -- Looking for idn_free - found -- Looking for idna_strerror -- Looking for idna_strerror - found -- Looking for tld_strerror -- Looking for tld_strerror - found -- Looking for setlocale -- Looking for setlocale - found -- Looking for setrlimit -- Looking for setrlimit - found -- Looking for sigaction -- Looking for sigaction - found -- Performing Curl Test HAVE_FIONBIO -- Performing Curl Test HAVE_FIONBIO - Failed -- Performing Curl Test HAVE_IOCTLSOCKET -- Performing Curl Test HAVE_IOCTLSOCKET - Failed -- Performing Curl Test HAVE_IOCTLSOCKET_CASE -- Performing Curl Test HAVE_IOCTLSOCKET_CASE - Failed -- Performing Curl Test HAVE_O_NONBLOCK -- Performing Curl Test HAVE_O_NONBLOCK - Success -- Performing Curl Test HAVE_SO_NONBLOCK -- Performing Curl Test HAVE_SO_NONBLOCK - Failed -- Performing Curl Test TIME_WITH_SYS_TIME -- Performing Curl Test TIME_WITH_SYS_TIME - Success -- Performing Curl Test HAVE_O_NONBLOCKHAVE_GETHOSTBYADDR_R_5 -- Performing Curl Test HAVE_O_NONBLOCKHAVE_GETHOSTBYADDR_R_5 - Failed -- Performing Curl Test HAVE_GETHOSTBYADDR_R_7 -- Performing Curl Test HAVE_GETHOSTBYADDR_R_7 - Failed -- Performing Curl Test HAVE_GETHOSTBYADDR_R_8 -- Performing Curl Test HAVE_GETHOSTBYADDR_R_8 - Success -- Performing Curl Test HAVE_GETHOSTBYADDR_R_5_REENTRANT -- Performing Curl Test HAVE_GETHOSTBYADDR_R_5_REENTRANT - Failed -- Performing Curl Test HAVE_GETHOSTBYADDR_R_7_REENTRANT -- Performing Curl Test HAVE_GETHOSTBYADDR_R_7_REENTRANT - Failed -- Performing Curl Test HAVE_GETHOSTBYADDR_R_8_REENTRANT -- Performing Curl Test HAVE_GETHOSTBYADDR_R_8_REENTRANT - Success -- Performing Curl Test HAVE_GETHOSTBYNAME_R_3 -- Performing Curl Test HAVE_GETHOSTBYNAME_R_3 - Failed -- Performing Curl Test HAVE_GETHOSTBYNAME_R_5 -- Performing Curl Test HAVE_GETHOSTBYNAME_R_5 - Failed -- Performing Curl Test HAVE_GETHOSTBYNAME_R_6 -- Performing Curl Test HAVE_GETHOSTBYNAME_R_6 - Success -- Performing Curl Test HAVE_GETHOSTBYNAME_R_3_REENTRANT -- Performing Curl Test HAVE_GETHOSTBYNAME_R_3_REENTRANT - Failed -- Performing Curl Test HAVE_GETHOSTBYNAME_R_5_REENTRANT -- Performing Curl Test HAVE_GETHOSTBYNAME_R_5_REENTRANT - Failed -- Performing Curl Test HAVE_GETHOSTBYNAME_R_6_REENTRANT -- Performing Curl Test HAVE_GETHOSTBYNAME_R_6_REENTRANT - Success -- Performing Curl Test HAVE_SOCKLEN_T -- Performing Curl Test HAVE_SOCKLEN_T - Success -- Performing Curl Test HAVE_IN_ADDR_T -- Performing Curl Test HAVE_IN_ADDR_T - Success -- Performing Curl Test STDC_HEADERS -- Performing Curl Test STDC_HEADERS - Success -- Performing Curl Test RETSIGTYPE_TEST -- Performing Curl Test RETSIGTYPE_TEST - Success -- Performing Curl Test HAVE_INET_NTOA_R_DECL -- Performing Curl Test HAVE_INET_NTOA_R_DECL - Failed -- Performing Curl Test HAVE_INET_NTOA_R_DECL_REENTRANT -- Performing Curl Test HAVE_INET_NTOA_R_DECL_REENTRANT - Failed -- Performing Curl Test HAVE_GETADDRINFO -- Performing Curl Test HAVE_GETADDRINFO - Success -- Performing Curl Test HAVE_FILE_OFFSET_BITS -- Performing Curl Test HAVE_FILE_OFFSET_BITS - Success -- Check size of curl_off_t -- Check size of curl_off_t - done -- Performing Test curl_cv_recv -- Performing Test curl_cv_recv - Success -- Performing Test int recv(int, void *, size_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(int, void *, size_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, void *, size_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(int, void *, size_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, void *, int, int) (curl_cv_func_recv_test) -- Performing Test int recv(int, void *, int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, void *, int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(int, void *, int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, void *, socklen_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(int, void *, socklen_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, void *, socklen_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(int, void *, socklen_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, void *, unsigned int, int) (curl_cv_func_recv_test) -- Performing Test int recv(int, void *, unsigned int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, void *, unsigned int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(int, void *, unsigned int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, char *, size_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(int, char *, size_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, char *, size_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(int, char *, size_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, char *, int, int) (curl_cv_func_recv_test) -- Performing Test int recv(int, char *, int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, char *, int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(int, char *, int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, char *, socklen_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(int, char *, socklen_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, char *, socklen_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(int, char *, socklen_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, char *, unsigned int, int) (curl_cv_func_recv_test) -- Performing Test int recv(int, char *, unsigned int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(int, char *, unsigned int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(int, char *, unsigned int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, void *, size_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, void *, size_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, void *, size_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, void *, size_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, void *, int, int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, void *, int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, void *, int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, void *, int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, void *, socklen_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, void *, socklen_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, void *, socklen_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, void *, socklen_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, void *, unsigned int, int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, void *, unsigned int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, void *, unsigned int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, void *, unsigned int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, char *, size_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, char *, size_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, char *, size_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, char *, size_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, char *, int, int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, char *, int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, char *, int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, char *, int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, char *, socklen_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, char *, socklen_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, char *, socklen_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, char *, socklen_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, char *, unsigned int, int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, char *, unsigned int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(ssize_t, char *, unsigned int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(ssize_t, char *, unsigned int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, void *, size_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, void *, size_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, void *, size_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, void *, size_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, void *, int, int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, void *, int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, void *, int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, void *, int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, void *, socklen_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, void *, socklen_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, void *, socklen_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, void *, socklen_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, void *, unsigned int, int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, void *, unsigned int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, void *, unsigned int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, void *, unsigned int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, char *, size_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, char *, size_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, char *, size_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, char *, size_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, char *, int, int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, char *, int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, char *, int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, char *, int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, char *, socklen_t, int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, char *, socklen_t, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, char *, socklen_t, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, char *, socklen_t, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, char *, unsigned int, int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, char *, unsigned int, int) (curl_cv_func_recv_test) - Failed -- Performing Test int recv(SOCKET, char *, unsigned int, unsigned int) (curl_cv_func_recv_test) -- Performing Test int recv(SOCKET, char *, unsigned int, unsigned int) (curl_cv_func_recv_test) - Failed -- Performing Test ssize_t recv(int, void *, size_t, int) (curl_cv_func_recv_test) -- Performing Test ssize_t recv(int, void *, size_t, int) (curl_cv_func_recv_test) - Success -- Performing Test curl_cv_send -- Performing Test curl_cv_send - Success -- Performing Test int send(int, const void *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(int, const void *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const void *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, const void *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const void *, int, int) (curl_cv_func_send_test) -- Performing Test int send(int, const void *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const void *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, const void *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const void *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(int, const void *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const void *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, const void *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const void *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(int, const void *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const void *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, const void *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, void *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(int, void *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, void *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, void *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, void *, int, int) (curl_cv_func_send_test) -- Performing Test int send(int, void *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, void *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, void *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, void *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(int, void *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, void *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, void *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, void *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(int, void *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, void *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, void *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, char *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(int, char *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, char *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, char *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, char *, int, int) (curl_cv_func_send_test) -- Performing Test int send(int, char *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, char *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, char *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, char *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(int, char *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, char *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, char *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, char *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(int, char *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, char *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, char *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const char *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(int, const char *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const char *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, const char *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const char *, int, int) (curl_cv_func_send_test) -- Performing Test int send(int, const char *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const char *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, const char *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const char *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(int, const char *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const char *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, const char *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const char *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(int, const char *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(int, const char *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(int, const char *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const void *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const void *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const void *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const void *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const void *, int, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const void *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const void *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const void *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const void *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const void *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const void *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const void *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const void *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const void *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const void *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const void *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, void *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, void *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, void *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, void *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, void *, int, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, void *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, void *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, void *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, void *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, void *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, void *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, void *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, void *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, void *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, void *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, void *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, char *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, char *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, char *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, char *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, char *, int, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, char *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, char *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, char *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, char *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, char *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, char *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, char *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, char *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, char *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, char *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, char *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const char *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const char *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const char *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const char *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const char *, int, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const char *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const char *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const char *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const char *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const char *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const char *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const char *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const char *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const char *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(ssize_t, const char *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(ssize_t, const char *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const void *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const void *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const void *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const void *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const void *, int, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const void *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const void *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const void *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const void *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const void *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const void *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const void *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const void *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const void *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const void *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const void *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, void *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, void *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, void *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, void *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, void *, int, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, void *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, void *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, void *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, void *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, void *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, void *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, void *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, void *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, void *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, void *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, void *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, char *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, char *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, char *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, char *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, char *, int, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, char *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, char *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, char *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, char *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, char *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, char *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, char *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, char *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, char *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, char *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, char *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const char *, size_t, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const char *, size_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const char *, size_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const char *, size_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const char *, int, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const char *, int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const char *, int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const char *, int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const char *, socklen_t, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const char *, socklen_t, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const char *, socklen_t, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const char *, socklen_t, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const char *, unsigned int, int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const char *, unsigned int, int) (curl_cv_func_send_test) - Failed -- Performing Test int send(SOCKET, const char *, unsigned int, unsigned int) (curl_cv_func_send_test) -- Performing Test int send(SOCKET, const char *, unsigned int, unsigned int) (curl_cv_func_send_test) - Failed -- Performing Test ssize_t send(int, const void *, size_t, int) (curl_cv_func_send_test) -- Performing Test ssize_t send(int, const void *, size_t, int) (curl_cv_func_send_test) - Success -- Performing Test HAVE_MSG_NOSIGNAL -- Performing Test HAVE_MSG_NOSIGNAL - Success -- Performing Test HAVE_STRUCT_TIMEVAL -- Performing Test HAVE_STRUCT_TIMEVAL - Success -- Check size of sig_atomic_t -- Check size of sig_atomic_t - done -- Performing Test HAVE_SIG_ATOMIC_T_NOT_VOLATILE -- Performing Test HAVE_SIG_ATOMIC_T_NOT_VOLATILE - Success -- Check size of struct sockaddr_storage -- Check size of struct sockaddr_storage - done -- Found ZLIB: cmzlib -- Found BZip2: cmbzip2 (found version "1.0.5") -- Looking for BZ2_bzCompressInit in cmbzip2 -- Looking for BZ2_bzCompressInit in cmbzip2 - not found -- Performing Test HAVE_DIRENT_H -- Performing Test HAVE_DIRENT_H - Success -- Looking for include files sys/types.h, acl/libacl.h -- Looking for include files sys/types.h, acl/libacl.h - not found -- Looking for include files sys/types.h, ctype.h -- Looking for include files sys/types.h, ctype.h - found -- Looking for 3 include files sys/types.h, ..., copyfile.h -- Looking for 3 include files sys/types.h, ..., copyfile.h - not found -- Looking for 3 include files sys/types.h, ..., direct.h -- Looking for 3 include files sys/types.h, ..., direct.h - not found -- Looking for 5 include files sys/types.h, ..., ext2fs/ext2_fs.h -- Looking for 5 include files sys/types.h, ..., ext2fs/ext2_fs.h - not found -- Performing Test HAVE_WORKING_EXT2_IOC_GETFLAGS -- Performing Test HAVE_WORKING_EXT2_IOC_GETFLAGS - Failed -- Looking for 6 include files sys/types.h, ..., grp.h -- Looking for 6 include files sys/types.h, ..., grp.h - found -- Looking for 8 include files sys/types.h, ..., langinfo.h -- Looking for 8 include files sys/types.h, ..., langinfo.h - found -- Looking for 10 include files sys/types.h, ..., linux/types.h -- Looking for 10 include files sys/types.h, ..., linux/types.h - found -- Looking for 11 include files sys/types.h, ..., linux/fiemap.h -- Looking for 11 include files sys/types.h, ..., linux/fiemap.h - found -- Looking for 12 include files sys/types.h, ..., linux/fs.h -- Looking for 12 include files sys/types.h, ..., linux/fs.h - found -- Looking for 13 include files sys/types.h, ..., linux/magic.h -- Looking for 13 include files sys/types.h, ..., linux/magic.h - found -- Looking for 16 include files sys/types.h, ..., paths.h -- Looking for 16 include files sys/types.h, ..., paths.h - found -- Looking for 17 include files sys/types.h, ..., poll.h -- Looking for 17 include files sys/types.h, ..., poll.h - found -- Looking for 19 include files sys/types.h, ..., regex.h -- Looking for 19 include files sys/types.h, ..., regex.h - found -- Looking for 21 include files sys/types.h, ..., stdarg.h -- Looking for 21 include files sys/types.h, ..., stdarg.h - found -- Looking for 26 include files sys/types.h, ..., sys/acl.h -- Looking for 26 include files sys/types.h, ..., sys/acl.h - not found -- Looking for 26 include files sys/types.h, ..., sys/cdefs.h -- Looking for 26 include files sys/types.h, ..., sys/cdefs.h - found -- Looking for 28 include files sys/types.h, ..., sys/mkdev.h -- Looking for 28 include files sys/types.h, ..., sys/mkdev.h - not found -- Looking for 28 include files sys/types.h, ..., sys/mount.h -- Looking for 28 include files sys/types.h, ..., sys/mount.h - not found -- Looking for 32 include files sys/types.h, ..., sys/statfs.h -- Looking for 32 include files sys/types.h, ..., sys/statfs.h - found -- Looking for 33 include files sys/types.h, ..., sys/statvfs.h -- Looking for 33 include files sys/types.h, ..., sys/statvfs.h - found -- Looking for 36 include files sys/types.h, ..., sys/vfs.h -- Looking for 36 include files sys/types.h, ..., sys/vfs.h - found -- Looking for 37 include files sys/types.h, ..., sys/wait.h -- Looking for 37 include files sys/types.h, ..., sys/wait.h - found -- Looking for 41 include files sys/types.h, ..., wchar.h -- Looking for 41 include files sys/types.h, ..., wchar.h - found -- Looking for 42 include files sys/types.h, ..., wctype.h -- Looking for 42 include files sys/types.h, ..., wctype.h - found -- Looking for 43 include files sys/types.h, ..., windows.h -- Looking for 43 include files sys/types.h, ..., windows.h - not found -- Looking for 43 include files sys/types.h, ..., wincrypt.h -- Looking for 43 include files sys/types.h, ..., wincrypt.h - not found -- Looking for 43 include files sys/types.h, ..., winioctl.h -- Looking for 43 include files sys/types.h, ..., winioctl.h - not found -- Performing Test SAFE_TO_DEFINE_EXTENSIONS -- Performing Test SAFE_TO_DEFINE_EXTENSIONS - Success -- Looking for MD5Init in md -- Looking for MD5Init in md - not found -- Looking for _CrtSetReportMode -- Looking for _CrtSetReportMode - not found -- Looking for chown -- Looking for chown - found -- Looking for chroot -- Looking for chroot - found -- Looking for ctime_r -- Looking for ctime_r - found -- Looking for fchdir -- Looking for fchdir - found -- Looking for fchmod -- Looking for fchmod - found -- Looking for fchown -- Looking for fchown - found -- Looking for fcntl -- Looking for fcntl - found -- Looking for fdopendir -- Looking for fdopendir - found -- Looking for fstat -- Looking for fstat - found -- Looking for fstatat -- Looking for fstatat - found -- Looking for fstatfs -- Looking for fstatfs - found -- Looking for fstatvfs -- Looking for fstatvfs - found -- Looking for futimens -- Looking for futimens - found -- Looking for futimes -- Looking for futimes - found -- Looking for futimesat -- Looking for futimesat - found -- Looking for getgrgid_r -- Looking for getgrgid_r - found -- Looking for getgrnam_r -- Looking for getgrnam_r - found -- Looking for getpwnam_r -- Looking for getpwnam_r - found -- Looking for getpwuid_r -- Looking for getpwuid_r - found -- Looking for getpid -- Looking for getpid - found -- Looking for getvfsbyname -- Looking for getvfsbyname - not found -- Looking for lchflags -- Looking for lchflags - not found -- Looking for lchown -- Looking for lchown - found -- Looking for link -- Looking for link - found -- Looking for lstat -- Looking for lstat - found -- Looking for lutimes -- Looking for lutimes - found -- Looking for mbrtowc -- Looking for mbrtowc - found -- Looking for mbsnrtowcs -- Looking for mbsnrtowcs - found -- Looking for memmove -- Looking for memmove - found -- Looking for mkdir -- Looking for mkdir - found -- Looking for mkfifo -- Looking for mkfifo - found -- Looking for mknod -- Looking for mknod - found -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for nl_langinfo -- Looking for nl_langinfo - found -- Looking for openat -- Looking for openat - found -- Looking for readlink -- Looking for readlink - found -- Looking for setenv -- Looking for setenv - found -- Looking for statfs -- Looking for statfs - found -- Looking for statvfs -- Looking for statvfs - found -- Looking for strchr -- Looking for strchr - found -- Looking for strerror -- Looking for strerror - found -- Looking for strncpy_s -- Looking for strncpy_s - not found -- Looking for strrchr -- Looking for strrchr - found -- Looking for symlink -- Looking for symlink - found -- Looking for timegm -- Looking for timegm - found -- Looking for tzset -- Looking for tzset - found -- Looking for utimes -- Looking for utimes - found -- Looking for utimensat -- Looking for utimensat - found -- Looking for vfork -- Looking for vfork - found -- Looking for wcrtomb -- Looking for wcrtomb - found -- Looking for wcscmp -- Looking for wcscmp - found -- Looking for wcscpy -- Looking for wcscpy - found -- Looking for wcslen -- Looking for wcslen - found -- Looking for wcsnrtombs -- Looking for wcsnrtombs - found -- Looking for wctomb -- Looking for wctomb - found -- Looking for _ctime64_s -- Looking for _ctime64_s - not found -- Looking for _fseeki64 -- Looking for _fseeki64 - not found -- Looking for _get_timezone -- Looking for _get_timezone - not found -- Looking for _localtime64_s -- Looking for _localtime64_s - not found -- Looking for _mkgmtime64 -- Looking for _mkgmtime64 - not found -- Looking for cygwin_conv_path -- Looking for cygwin_conv_path - not found -- Looking for fseeko -- Looking for fseeko - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for wmemcmp -- Looking for wmemcmp - found -- Looking for wmemcpy -- Looking for wmemcpy - found -- Performing Test HAVE_READDIR_R -- Performing Test HAVE_READDIR_R - Success -- Performing Test HAVE_READLINKAT -- Performing Test HAVE_READLINKAT - Success -- Performing Test MAJOR_IN_MKDEV -- Performing Test MAJOR_IN_MKDEV - Failed -- Performing Test MAJOR_IN_SYSMACROS -- Performing Test MAJOR_IN_SYSMACROS - Success -- Looking for EFTYPE -- Looking for EFTYPE - not found -- Looking for EILSEQ -- Looking for EILSEQ - found -- Looking for D_MD_ORDER -- Looking for D_MD_ORDER - not found -- Looking for INT64_MAX -- Looking for INT64_MAX - found -- Looking for INT64_MIN -- Looking for INT64_MIN - found -- Looking for UINT32_MAX -- Looking for UINT32_MAX - found -- Looking for UINT64_MAX -- Looking for UINT64_MAX - found -- Looking for SIZE_MAX -- Looking for SIZE_MAX - found -- Looking for SSIZE_MAX -- Looking for SSIZE_MAX - found -- Performing Test HAVE_STRUCT_TM_TM_GMTOFF -- Performing Test HAVE_STRUCT_TM_TM_GMTOFF - Success -- Performing Test HAVE_STRUCT_TM___TM_GMTOFF -- Performing Test HAVE_STRUCT_TM___TM_GMTOFF - Failed -- Performing Test HAVE_STRUCT_STATFS_F_NAMEMAX -- Performing Test HAVE_STRUCT_STATFS_F_NAMEMAX - Failed -- Performing Test HAVE_STRUCT_STAT_ST_BIRTHTIME -- Performing Test HAVE_STRUCT_STAT_ST_BIRTHTIME - Failed -- Performing Test HAVE_STRUCT_STAT_ST_BIRTHTIMESPEC_TV_NSEC -- Performing Test HAVE_STRUCT_STAT_ST_BIRTHTIMESPEC_TV_NSEC - Failed -- Performing Test HAVE_STRUCT_STAT_ST_MTIMESPEC_TV_NSEC -- Performing Test HAVE_STRUCT_STAT_ST_MTIMESPEC_TV_NSEC - Failed -- Performing Test HAVE_STRUCT_STAT_ST_MTIM_TV_NSEC -- Performing Test HAVE_STRUCT_STAT_ST_MTIM_TV_NSEC - Success -- Performing Test HAVE_STRUCT_STAT_ST_MTIME_N -- Performing Test HAVE_STRUCT_STAT_ST_MTIME_N - Failed -- Performing Test HAVE_STRUCT_STAT_ST_UMTIME -- Performing Test HAVE_STRUCT_STAT_ST_UMTIME - Failed -- Performing Test HAVE_STRUCT_STAT_ST_MTIME_USEC -- Performing Test HAVE_STRUCT_STAT_ST_MTIME_USEC - Failed -- Performing Test HAVE_STRUCT_STAT_ST_BLKSIZE -- Performing Test HAVE_STRUCT_STAT_ST_BLKSIZE - Success -- Performing Test HAVE_STRUCT_STAT_ST_FLAGS -- Performing Test HAVE_STRUCT_STAT_ST_FLAGS - Failed -- Performing Test HAVE_STRUCT_STATVFS_F_IOSIZE -- Performing Test HAVE_STRUCT_STATVFS_F_IOSIZE - Failed -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of long long -- Check size of long long - done -- Check size of unsigned short -- Check size of unsigned short - done -- Check size of unsigned -- Check size of unsigned - done -- Check size of unsigned long -- Check size of unsigned long - done -- Check size of unsigned long long -- Check size of unsigned long long - done -- Check size of __int64 -- Check size of __int64 - failed -- Check size of unsigned __int64 -- Check size of unsigned __int64 - failed -- Check size of int16_t -- Check size of int16_t - done -- Check size of int32_t -- Check size of int32_t - done -- Check size of int64_t -- Check size of int64_t - done -- Check size of intmax_t -- Check size of intmax_t - done -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of uintmax_t -- Check size of uintmax_t - done -- Check size of dev_t -- Check size of dev_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of id_t -- Check size of id_t - done -- Check size of mode_t -- Check size of mode_t - done -- Check size of off_t -- Check size of off_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of ssize_t -- Check size of ssize_t - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of pid_t -- Check size of pid_t - done -- Check size of intptr_t -- Check size of intptr_t - done -- Check size of uintptr_t -- Check size of uintptr_t - done -- Check size of wchar_t -- Check size of wchar_t - done -- Checking _FILE_OFFSET_BITS for large files -- Checking _FILE_OFFSET_BITS for large files - not needed -- Checking support for ARCHIVE_CRYPTO_MD5_LIBC -- Checking support for ARCHIVE_CRYPTO_MD5_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_RMD160_LIBC -- Checking support for ARCHIVE_CRYPTO_RMD160_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBC -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC2 -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC2 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC2 -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC2 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC2 -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC2 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC3 -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC3 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC3 -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC3 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC3 -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC3 -- not found -- Checking support for ARCHIVE_CRYPTO_MD5_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_MD5_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_MD5_LIBMD -- Checking support for ARCHIVE_CRYPTO_MD5_LIBMD -- not found -- Checking support for ARCHIVE_CRYPTO_RMD160_LIBMD -- Checking support for ARCHIVE_CRYPTO_RMD160_LIBMD -- not found -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBMD -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBMD -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBMD -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBMD -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBMD -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBMD -- not found -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for wsyncup in /usr/lib/x86_64-linux-gnu/libcurses.so -- Looking for wsyncup in /usr/lib/x86_64-linux-gnu/libcurses.so - found -- Looking for elf.h -- Looking for elf.h - found -- Looking for a Fortran compiler -- Looking for a Fortran compiler - /usr/bin/f95 -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake (found version "4.8.1") -- Performing Test QT4_WORKS -- Performing Test QT4_WORKS - Success -- Performing Test run_pic_test -- Performing Test run_pic_test - Success -- Configuring done -- Generating done -- Build files have been written to: /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2 --------------------------------------------- CMake has bootstrapped. Now run make. =============================================================================== Compiling CMake; this may take several minutes =============================================================================== Executing: cd /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2 && make && make install && make clean stdout: Scanning dependencies of target cmIML_test [ 0%] Building C object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test.c.o [ 0%] Building C object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test_ABI_C.c.o [ 1%] Building C object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test_INT_C.c.o [ 1%] Building C object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test_include_C.c.o [ 1%] Building CXX object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test_ABI_CXX.cxx.o [ 1%] Building CXX object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test_INT_CXX.cxx.o [ 1%] Building CXX object 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[ 12%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/connect.c.o [ 12%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/content_encoding.c.o [ 12%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/cookie.c.o [ 13%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/dict.c.o [ 13%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/easy.c.o [ 13%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/escape.c.o [ 13%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/file.c.o [ 14%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/formdata.c.o [ 14%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/ftp.c.o [ 14%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/getenv.c.o [ 14%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/getinfo.c.o [ 14%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/gtls.c.o [ 15%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/hash.c.o [ 15%] Building C object 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object Utilities/cmcurl/CMakeFiles/cmcurl.dir/inet_ntop.c.o [ 18%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/inet_pton.c.o [ 18%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/krb4.c.o [ 19%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/ldap.c.o [ 19%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/llist.c.o [ 19%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/md5.c.o [ 19%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/mprintf.c.o [ 20%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/multi.c.o [ 20%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/netrc.c.o [ 20%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/parsedate.c.o [ 20%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/progress.c.o [ 20%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/security.c.o [ 21%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/select.c.o [ 21%] Building C object 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Utilities/cmcurl/CMakeFiles/cmcurl.dir/timeval.c.o [ 24%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/transfer.c.o [ 24%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/url.c.o [ 25%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/version.c.o Linking C static library libcmcurl.a [ 25%] Built target cmcurl Scanning dependencies of target LIBCURL [ 25%] Building C object Utilities/cmcurl/CMakeFiles/LIBCURL.dir/Testing/curltest.c.o Linking C executable LIBCURL [ 25%] Built target LIBCURL Scanning dependencies of target cmcompress [ 26%] Building C object Utilities/cmcompress/CMakeFiles/cmcompress.dir/cmcompress.c.o Linking C static library libcmcompress.a [ 26%] Built target cmcompress Scanning dependencies of target cmbzip2 [ 26%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/blocksort.c.o [ 26%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/huffman.c.o [ 26%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/crctable.c.o [ 27%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/randtable.c.o [ 27%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/compress.c.o [ 27%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/decompress.c.o [ 27%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/bzlib.c.o Linking C static library libcmbzip2.a [ 27%] Built target cmbzip2 Scanning dependencies of target cmlibarchive [ 27%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_acl.c.o [ 28%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_check_magic.c.o [ 28%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_crypto.c.o [ 28%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_entry.c.o [ 28%] Building C object 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target cmzlib [ 25%] Built target cmcurl [ 25%] Built target LIBCURL [ 26%] Built target cmcompress [ 27%] Built target cmbzip2 [ 46%] Built target cmlibarchive [ 46%] Built target cmexpat [ 55%] Built target cmForm [ 79%] Built target CMakeLib [ 82%] Built target CPackLib [ 92%] Built target CTestLib [ 95%] Built target ccmake [ 96%] Built target cmake [ 96%] Built target cpack [ 96%] Built target ctest [ 97%] Built target documentation [ 98%] Built target CMakeLibTests [ 99%] Built target runcompilecommands [ 99%] Built target foo [100%] Built target memcheck_fail [100%] Built target pseudo_BC [100%] Built target pseudo_purify [100%] Built target pseudo_valgrind Install the project... -- Install configuration: "" -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/Copyright.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/UseVTKBuildSettings40.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckFunctionExists.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/TestForAnsiForScope.cxx -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindosgGA.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CTest.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindZLIB.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestGNU.c -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckLibraryExists.lists.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindGTest.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckCXXSourceRuns.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindCoin3D.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeMSYSFindMake.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/SquishRunTestCase.bat -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindImageMagick.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeExtraGeneratorDetermineCompilerMacrosAndIncludeDirs.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindwxWidgets.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindGIF.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/TestForSSTREAM.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindKDE3.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeCommonLanguageInclude.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindSDL_sound.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindLibArchive.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindProtobuf.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckIncludeFileCXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeFortranCompilerABI.F -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeMinGWFindMake.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindBoost.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindosgDB.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindLua51.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindQt.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindUnixCommands.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindWish.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeConfigurableFile.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeClDeps.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindSWIG.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeBorlandFindMake.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeCCompilerABI.c -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckSizeOf.cmake -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindOpenAL.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeDetermineCompiler.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/InstallRequiredSystemLibraries.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindBZip2.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindSDL_net.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakePushCheckState.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeGenericSystem.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/TestForSTDNamespace.cxx -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindOpenSceneGraph.cmake -- Installing: 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-- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/call_mod.f90 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Macro.h.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Verify -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Verify/CMakeLists.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Verify/VerifyC.c -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Verify/VerifyCXX.cxx -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Verify/VerifyFortran.f -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Verify/main.c -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Input.cmake.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/my_module_.c -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/mymodule.f90 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/my_sub.f -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/CMakeLists.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/my_module.f90 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/mymodule_.c -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface/Output.cmake.in -- 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindSDL.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindPackageMessage.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindSubversion.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/ITKCompatibility.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestASM-ATTCompiler.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestASM_MASMCompiler.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindCxxTest.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/TestForSSTREAM.cxx -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindosgFX.cmake -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/XL-Fortran.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/PathScale-C.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/PathScale.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/HP-ASM.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/GNU-C.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/XL-ASM.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/HP-C.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/VisualAge-Fortran.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/SunPro-Fortran.cmake -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/Intel-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/XL.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/MIPSpro-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/GNU-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/Intel-C.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/Intel-Fortran.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/PGI-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/Clang-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/PGI-C.cmake -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/MIPSpro-Fortran.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/GNU.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Compiler/MIPSpro-C.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeJavaCompiler.cmake.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindLibLZMA.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FLTKCompatibility.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/AddFileDependencies.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeJavaInformation.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/NSIS.template.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindTCL.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeBackwardCompatibilityCXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindMFC.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindFLTK.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindosgText.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindCurses.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindosgShadow.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPack.background.png.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPackZIP.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindX11.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindLAPACK.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindJava.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindSDL_ttf.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindOpenMP.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindJasper.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPackPackageMaker.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPack.DS_Store.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/MacOSXBundleInfo.plist.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindProducer.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeCXXCompiler.cmake.in -- 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/UsewxWidgets.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeVS7BackwardCompatibility.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeASM-ATTInformation.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPack.OSXX11.main.scpt.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/AutomocInfo.cmake.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/SquishTestScript.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindosgParticle.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FortranCInterface.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/DeployQt4.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindHSPELL.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/SystemInformation.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindFreetype.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindEXPAT.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPackCygwin.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindRuby.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPackRPM.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeDetermineRCCompiler.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckIncludeFile.cxx.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindRTI.cmake -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/AIX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/FreeBSD.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/SunOS-GNU-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Windows-Embarcadero-C.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/ULTRIX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Windows-MSVC.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Darwin-VisualAge-C.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Linux-Intel.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/gas.cmake -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeVS10FindMake.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeVerifyManifest.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/TestForANSIStreamHeaders.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeDetermineCXXCompiler.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindPostgreSQL.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/UtilityHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/EXEHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CPack.GenericDescription.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CTestScript.cmake.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CMakeVSMacros1.vsmacros -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/cygwin-package.sh.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CPackConfig.cmake.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/TestDriver.cxx.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/DLLFooter.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CMakeVSMacros2.vsmacros -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/UtilityFooter.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/AppleInfo.plist -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/staticLibFooter.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/staticLibHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/EXEFooter.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CPack.GenericWelcome.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/DLLHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CMakeVisualStudio6Configurations.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CPack.GenericLicense.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/EXEWinHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmsys/Copyright.txt -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakecompat.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakeprops.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakepolicies.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakevars.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakemodules.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/ctest.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cpack.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/ccmake.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-policies.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-properties.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-variables.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-modules.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-commands.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-compatcommands.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ctest.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cpack.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ccmake.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-policies.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-properties.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-variables.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-modules.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-commands.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-compatcommands.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ctest.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cpack.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ccmake.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake.docbook -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ctest.docbook -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cpack.docbook -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ccmake.docbook -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/aclocal/cmake.m4 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/editors/vim/cmake-help.vim -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/editors/vim/cmake-indent.vim -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/editors/vim/cmake-syntax.vim -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/editors/emacs/cmake-mode.el -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/completions/cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/completions/cpack -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/completions/ctest ********Output of running make on cmake follows ******* Scanning dependencies of target cmIML_test [ 0%] Building C object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test.c.o [ 0%] Building C object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test_ABI_C.c.o [ 1%] Building C object Utilities/KWIML/test/CMakeFiles/cmIML_test.dir/test_INT_C.c.o [ 1%] Building C object 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Source/kwsys/CMakeFiles/cmsys_c.dir/ProcessUNIX.c.o [ 4%] Building C object Source/kwsys/CMakeFiles/cmsys_c.dir/Base64.c.o [ 5%] Building C object Source/kwsys/CMakeFiles/cmsys_c.dir/MD5.c.o [ 5%] Building C object Source/kwsys/CMakeFiles/cmsys_c.dir/Terminal.c.o [ 5%] Building C object Source/kwsys/CMakeFiles/cmsys_c.dir/System.c.o [ 5%] Building C object Source/kwsys/CMakeFiles/cmsys_c.dir/String.c.o Linking C static library libcmsys_c.a [ 5%] Built target cmsys_c Scanning dependencies of target cmsysTestProcess [ 6%] Building C object Source/kwsys/CMakeFiles/cmsysTestProcess.dir/testProcess.c.o Linking C executable cmsysTestProcess [ 6%] Built target cmsysTestProcess Scanning dependencies of target cmsysTestSharedForward [ 6%] Building C object Source/kwsys/CMakeFiles/cmsysTestSharedForward.dir/testSharedForward.c.o Linking C executable cmsysTestSharedForward [ 6%] Built target cmsysTestSharedForward Scanning dependencies of target cmsysTestsC [ 6%] Building C object Source/kwsys/CMakeFiles/cmsysTestsC.dir/cmsysTestsC.c.o [ 6%] Building C object Source/kwsys/CMakeFiles/cmsysTestsC.dir/testEncode.c.o [ 7%] Building C object Source/kwsys/CMakeFiles/cmsysTestsC.dir/testTerminal.c.o Linking C executable cmsysTestsC [ 7%] Built target cmsysTestsC Scanning dependencies of target cmsysTestsCxx [ 7%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/cmsysTestsCxx.cxx.o [ 7%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testAutoPtr.cxx.o [ 7%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testHashSTL.cxx.o [ 7%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testRegistry.cxx.o [ 8%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testIOS.cxx.o [ 8%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testSystemTools.cxx.o [ 8%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testCommandLineArguments.cxx.o [ 8%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testCommandLineArguments1.cxx.o [ 9%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testSystemInformation.cxx.o [ 9%] Building CXX object Source/kwsys/CMakeFiles/cmsysTestsCxx.dir/testDynamicLoader.cxx.o Linking CXX executable cmsysTestsCxx [ 9%] Built target cmsysTestsCxx Scanning dependencies of target cmzlib [ 9%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/adler32.c.o [ 10%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/compress.c.o [ 10%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/crc32.c.o [ 10%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/deflate.c.o [ 10%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/gzio.c.o [ 11%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/inffast.c.o [ 11%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/inflate.c.o [ 11%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/inftrees.c.o [ 11%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/trees.c.o [ 12%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/uncompr.c.o [ 12%] Building C object Utilities/cmzlib/CMakeFiles/cmzlib.dir/zutil.c.o Linking C static library libcmzlib.a [ 12%] Built target cmzlib Scanning dependencies of target cmcurl [ 12%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/base64.c.o [ 12%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/connect.c.o [ 12%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/content_encoding.c.o [ 12%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/cookie.c.o [ 13%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/dict.c.o [ 13%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/easy.c.o [ 13%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/escape.c.o [ 13%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/file.c.o [ 14%] Building C object Utilities/cmcurl/CMakeFiles/cmcurl.dir/formdata.c.o [ 14%] Building 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Utilities/cmcompress/CMakeFiles/cmcompress.dir/cmcompress.c.o Linking C static library libcmcompress.a [ 26%] Built target cmcompress Scanning dependencies of target cmbzip2 [ 26%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/blocksort.c.o [ 26%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/huffman.c.o [ 26%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/crctable.c.o [ 27%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/randtable.c.o [ 27%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/compress.c.o [ 27%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/decompress.c.o [ 27%] Building C object Utilities/cmbzip2/CMakeFiles/cmbzip2.dir/bzlib.c.o Linking C static library libcmbzip2.a [ 27%] Built target cmbzip2 Scanning dependencies of target cmlibarchive [ 27%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_acl.c.o [ 28%] Building C object 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pseudo_BC [100%] Built target pseudo_purify [100%] Built target pseudo_valgrind Install the project... -- Install configuration: "" -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/Copyright.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/UseVTKBuildSettings40.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckFunctionExists.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/TestForAnsiForScope.cxx -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindosgGA.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CTest.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindZLIB.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestGNU.c -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckLibraryExists.lists.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindGTest.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckCXXSourceRuns.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindCoin3D.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeMSYSFindMake.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/SquishRunTestCase.bat -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindImageMagick.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeExtraGeneratorDetermineCompilerMacrosAndIncludeDirs.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindwxWidgets.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindGIF.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/TestForSSTREAM.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindKDE3.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeCommonLanguageInclude.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindSDL_sound.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindLibArchive.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindProtobuf.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckIncludeFileCXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeFortranCompilerABI.F -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Haiku.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Windows-MSVC-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Linux-GNU-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/AIX-GNU.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Linux-GNU-C.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Windows-Intel-ASM.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/Linux-CXX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/QNX.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/Platform/WindowsPaths.cmake -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeVS6FindMake.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/UseJavaClassFilelist.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindWget.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindQt3.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CTestScriptMode.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestWatcomVersion.c -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeDetermineSystem.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CheckIncludeFiles.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindGit.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPack.OSXScriptLauncher.rsrc.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CPack.OSXX11.Info.plist.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindGLU.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindBISON.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeForceCompiler.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeVS10FindMake.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeVerifyManifest.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/TestForANSIStreamHeaders.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeDetermineCXXCompiler.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/FindPostgreSQL.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/UtilityHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/EXEHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CPack.GenericDescription.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CTestScript.cmake.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CMakeVSMacros1.vsmacros -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/cygwin-package.sh.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CPackConfig.cmake.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/TestDriver.cxx.in -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/DLLFooter.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CMakeVSMacros2.vsmacros -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/UtilityFooter.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/AppleInfo.plist -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/staticLibFooter.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/staticLibHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/EXEFooter.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CPack.GenericWelcome.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/DLLHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CMakeVisualStudio6Configurations.cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/CPack.GenericLicense.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Templates/EXEWinHeader.dsptemplate -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmsys/Copyright.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmzlib/Copyright.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmcurl/COPYING -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmcompress/Copyright.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmlibarchive/COPYING -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmexpat/COPYING -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/include/cmCPluginAPI.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/bin/ccmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/bin/cpack -- Installing: /sandbox/balay/petsc.clone/arch-elemental/bin/ctest -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmake.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakecommands.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakecompat.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakeprops.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakepolicies.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakevars.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cmakemodules.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/ctest.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/cpack.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/man/man1/ccmake.1 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-policies.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-properties.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-variables.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-modules.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-commands.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-compatcommands.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ctest.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cpack.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ccmake.txt -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-policies.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-properties.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-variables.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-modules.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-commands.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake-compatcommands.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ctest.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cpack.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ccmake.html -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cmake.docbook -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ctest.docbook -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/cpack.docbook -- Installing: /sandbox/balay/petsc.clone/arch-elemental/doc/cmake-2.8/ccmake.docbook -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/aclocal/cmake.m4 -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/editors/vim/cmake-help.vim -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/editors/vim/cmake-indent.vim -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/editors/vim/cmake-syntax.vim -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/editors/emacs/cmake-mode.el -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/completions/cmake -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/completions/cpack -- Installing: /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/completions/ctest********End of Output of running make on cmake ******* Executing: cp -f /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2/cmake.args /sandbox/balay/petsc.clone/arch-elemental/conf/cmake Defined make macro "CMAKE" to "/sandbox/balay/petsc.clone/arch-elemental/bin/cmake" Not checking for library in Download CMAKE: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download CMAKE: ['/sandbox/balay/petsc.clone/arch-elemental/include', '/usr/include/mpich2'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.cmake(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.cmake(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.metis(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.metis(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.parmetis(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.parmetis(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Numpy(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Numpy(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.X(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Package specific search directory X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lX11 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBX11" to "1" Popping language C Checking for headers Package specific search directory X: ['/usr/include/mpich2'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/usr/include/mpich2'] Checking include with compiler flags var CPPFLAGS ['/usr/include/mpich2'] Executing: mpicc -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.headers -I/usr/include/mpich2 /tmp/petsc-KqLK70/config.headers/conftest.c stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.c" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 # 3 "/tmp/petsc-KqLK70/config.headers/conftest.c" 2 # 1 "/usr/include/X11/Xlib.h" 1 3 4 # 38 "/usr/include/X11/Xlib.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 39 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/X.h" 1 3 4 # 66 "/usr/include/X11/X.h" 3 4 typedef unsigned long XID; typedef unsigned long Mask; typedef unsigned long Atom; typedef unsigned long VisualID; typedef unsigned long Time; # 96 "/usr/include/X11/X.h" 3 4 typedef XID Window; typedef XID Drawable; typedef XID Font; typedef XID Pixmap; typedef XID Cursor; typedef XID Colormap; typedef XID GContext; typedef XID KeySym; typedef unsigned char KeyCode; # 45 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/Xfuncproto.h" 1 3 4 # 48 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/Xosdefs.h" 1 3 4 # 49 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 150 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 52 "/usr/include/X11/Xlib.h" 2 3 4 # 69 "/usr/include/X11/Xlib.h" 3 4 extern int _Xmblen( char *str, int len ); typedef char *XPointer; # 156 "/usr/include/X11/Xlib.h" 3 4 typedef struct _XExtData { int number; struct _XExtData *next; int (*free_private)( struct _XExtData *extension ); XPointer private_data; } XExtData; typedef struct { int extension; int major_opcode; int first_event; int first_error; } XExtCodes; typedef struct { int depth; int bits_per_pixel; int scanline_pad; } XPixmapFormatValues; typedef struct { int function; unsigned long plane_mask; unsigned long foreground; unsigned long background; int line_width; int line_style; int cap_style; int join_style; int fill_style; int fill_rule; int arc_mode; Pixmap tile; Pixmap stipple; int ts_x_origin; int ts_y_origin; Font font; int subwindow_mode; int graphics_exposures; int clip_x_origin; int clip_y_origin; Pixmap clip_mask; int dash_offset; char dashes; } XGCValues; typedef struct _XGC *GC; typedef struct { XExtData *ext_data; VisualID visualid; int class; unsigned long red_mask, green_mask, blue_mask; int bits_per_rgb; int map_entries; } Visual; typedef struct { int depth; int nvisuals; Visual *visuals; } Depth; struct _XDisplay; typedef struct { XExtData *ext_data; struct _XDisplay *display; Window root; int width, height; int mwidth, mheight; int ndepths; Depth *depths; int root_depth; Visual *root_visual; GC default_gc; Colormap cmap; unsigned long white_pixel; unsigned long black_pixel; int max_maps, min_maps; int backing_store; int save_unders; long root_input_mask; } Screen; typedef struct { XExtData *ext_data; int depth; int bits_per_pixel; int scanline_pad; } ScreenFormat; typedef struct { Pixmap background_pixmap; unsigned long background_pixel; Pixmap border_pixmap; unsigned long border_pixel; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; long event_mask; long do_not_propagate_mask; int override_redirect; Colormap colormap; Cursor cursor; } XSetWindowAttributes; typedef struct { int x, y; int width, height; int border_width; int depth; Visual *visual; Window root; int class; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; Colormap colormap; int map_installed; int map_state; long all_event_masks; long your_event_mask; long do_not_propagate_mask; int override_redirect; Screen *screen; } XWindowAttributes; typedef struct { int family; int length; char *address; } XHostAddress; typedef struct { int typelength; int valuelength; char *type; char *value; } XServerInterpretedAddress; typedef struct _XImage { int width, height; int xoffset; int format; char *data; int byte_order; int bitmap_unit; int bitmap_bit_order; int bitmap_pad; int depth; int bytes_per_line; int bits_per_pixel; unsigned long red_mask; unsigned long green_mask; unsigned long blue_mask; XPointer obdata; struct funcs { struct _XImage *(*create_image)( struct _XDisplay* , Visual* , unsigned int , int , int , char* , unsigned int , unsigned int , int , int ); int (*destroy_image) (struct _XImage *); unsigned long (*get_pixel) (struct _XImage *, int, int); int (*put_pixel) (struct _XImage *, int, int, unsigned long); struct _XImage *(*sub_image)(struct _XImage *, int, int, unsigned int, unsigned int); int (*add_pixel) (struct _XImage *, long); } f; } XImage; typedef struct { int x, y; int width, height; int border_width; Window sibling; int stack_mode; } XWindowChanges; typedef struct { unsigned long pixel; unsigned short red, green, blue; char flags; char pad; } XColor; typedef struct { short x1, y1, x2, y2; } XSegment; typedef struct { short x, y; } XPoint; typedef struct { short x, y; unsigned short width, height; } XRectangle; typedef struct { short x, y; unsigned short width, height; short angle1, angle2; } XArc; typedef struct { int key_click_percent; int bell_percent; int bell_pitch; int bell_duration; int led; int led_mode; int key; int auto_repeat_mode; } XKeyboardControl; typedef struct { int key_click_percent; int bell_percent; unsigned int bell_pitch, bell_duration; unsigned long led_mask; int global_auto_repeat; char auto_repeats[32]; } XKeyboardState; typedef struct { Time time; short x, y; } XTimeCoord; typedef struct { int max_keypermod; KeyCode *modifiermap; } XModifierKeymap; # 495 "/usr/include/X11/Xlib.h" 3 4 typedef struct _XDisplay Display; struct _XPrivate; struct _XrmHashBucketRec; typedef struct { XExtData *ext_data; struct _XPrivate *private1; int fd; int private2; int proto_major_version; int proto_minor_version; char *vendor; XID private3; XID private4; XID private5; int private6; XID (*resource_alloc)( struct _XDisplay* ); int byte_order; int bitmap_unit; int bitmap_pad; int bitmap_bit_order; int nformats; ScreenFormat *pixmap_format; int private8; int release; struct _XPrivate *private9, *private10; int qlen; unsigned long last_request_read; unsigned long request; XPointer private11; XPointer private12; XPointer private13; XPointer private14; unsigned max_request_size; struct _XrmHashBucketRec *db; int (*private15)( struct _XDisplay* ); char *display_name; int default_screen; int nscreens; Screen *screens; unsigned long motion_buffer; unsigned long private16; int min_keycode; int max_keycode; XPointer private17; XPointer private18; int private19; char *xdefaults; } *_XPrivDisplay; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int keycode; int same_screen; } XKeyEvent; typedef XKeyEvent XKeyPressedEvent; typedef XKeyEvent XKeyReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int button; int same_screen; } XButtonEvent; typedef XButtonEvent XButtonPressedEvent; typedef XButtonEvent XButtonReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; char is_hint; int same_screen; } XMotionEvent; typedef XMotionEvent XPointerMovedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; int mode; int detail; int same_screen; int focus; unsigned int state; } XCrossingEvent; typedef XCrossingEvent XEnterWindowEvent; typedef XCrossingEvent XLeaveWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int mode; int detail; } XFocusChangeEvent; typedef XFocusChangeEvent XFocusInEvent; typedef XFocusChangeEvent XFocusOutEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; char key_vector[32]; } XKeymapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int x, y; int width, height; int count; } XExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int x, y; int width, height; int count; int major_code; int minor_code; } XGraphicsExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int major_code; int minor_code; } XNoExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int state; } XVisibilityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; int override_redirect; } XCreateWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; } XDestroyWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int from_configure; } XUnmapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int override_redirect; } XMapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; } XMapRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; Window parent; int x, y; int override_redirect; } XReparentEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; int width, height; int border_width; Window above; int override_redirect; } XConfigureEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; } XGravityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int width, height; } XResizeRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; Window above; int detail; unsigned long value_mask; } XConfigureRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int place; } XCirculateEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int place; } XCirculateRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom atom; Time time; int state; } XPropertyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom selection; Time time; } XSelectionClearEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window owner; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Colormap colormap; int new; int state; } XColormapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom message_type; int format; union { char b[20]; short s[10]; long l[5]; } data; } XClientMessageEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int request; int first_keycode; int count; } XMappingEvent; typedef struct { int type; Display *display; XID resourceid; unsigned long serial; unsigned char error_code; unsigned char request_code; unsigned char minor_code; } XErrorEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; } XAnyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; } XGenericEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; unsigned int cookie; void *data; } XGenericEventCookie; typedef union _XEvent { int type; XAnyEvent xany; Found header files ['X11/Xlib.h'] in ['/usr/include/mpich2'] Popping language C ================================================================================ TEST checkSharedLibrary from PETSc.packages.X(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Zoltan(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Zoltan(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.afterimage(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.afterimage(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.utilities.Regression(/sandbox/balay/petsc.clone/config/PETSc/utilities/Regression.py:32) TESTING: configureRegression from PETSc.utilities.Regression(config/PETSc/utilities/Regression.py:32) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to "C C_X Fortran CMAKE X F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex DATAFILESPATH" ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:440) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:440) ================================================================================ Checking for a functional BLAS and LAPACK in IRIX Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:112) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:112) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libcomplib.sgimath.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lcomplib.sgimath -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libcomplib.sgimath.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lcomplib.sgimath -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libcomplib.sgimath.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lcomplib.sgimath -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Another IRIX Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:112) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:112) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libscs.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lscs -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lscs collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libscs.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lscs -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lscs collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libscs.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lscs -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lscs collect2: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Compaq/Alpha Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:112) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:112) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libcxml.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lcxml -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcxml collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libcxml.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lcxml -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcxml collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libcxml.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lcxml -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcxml collect2: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:112) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:112) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libessl.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lessl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lessl collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libessl.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lessl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lessl collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libessl.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lessl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lessl collect2: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library for Blue Gene ================================================================================ TEST checkLib from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:112) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:112) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libesslbg.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lesslbg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lesslbg collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libesslbg.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lesslbg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lesslbg collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libesslbg.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lesslbg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lesslbg collect2: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler libraries ================================================================================ TEST checkLib from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:112) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:112) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_ddot_': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `ddot_' collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_ddot': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `ddot' collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_ddot_': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `ddot_' collect2: ld returned 1 exit status Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations ================================================================================ TEST checkLib from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:112) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:112) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libblas.a'] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -lblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBBLAS" to "1" Popping language C Checking for functions [dgetrs_] in library ['liblapack.a'] ['libblas.a', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -llapack -lblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for functions [dgeev_] in library ['liblapack.a'] ['libblas.a', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -llapack -lblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBLAPACK" to "1" Popping language C Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST check64BitBLASIndices from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:553) TESTING: check64BitBLASIndices from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:553) Check for and use 64bit integer blas ================================================================================ TEST checkESSL from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:499) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:499) Check for the IBM ESSL library Checking for functions [iessl] in library ['liblapack.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -llapack -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `iessl' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:505) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:505) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['liblapack.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -llapack -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `ipessl' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:518) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:518) Check for missing LAPACK routines Checking for functions [dtrsen_ dgerfs_ dgges_ dtgsen_ dgesvd_ dgetrf_ dgetrs_ dgeev_ dgelss_ dsyev_ dsyevx_ dsygv_ dsygvx_ dpotrf_ dpotrs_ dstebz_ dpttrf_ dpttrs_ dstein_ dorgqr_ dgeqrf_ dgesv_ dhseqr_ dsteqr_] in library ['liblapack.a'] ['libblas.a', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dgesvd_(); static void _check_dgesvd_() { dgesvd_(); } char dgetrf_(); static void _check_dgetrf_() { dgetrf_(); } char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } char dgeev_(); static void _check_dgeev_() { dgeev_(); } char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dsyev_(); static void _check_dsyev_() { dsyev_(); } char dsyevx_(); static void _check_dsyevx_() { dsyevx_(); } char dsygv_(); static void _check_dsygv_() { dsygv_(); } char dsygvx_(); static void _check_dsygvx_() { dsygvx_(); } char dpotrf_(); static void _check_dpotrf_() { dpotrf_(); } char dpotrs_(); static void _check_dpotrs_() { dpotrs_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dpttrf_(); static void _check_dpttrf_() { dpttrf_(); } char dpttrs_(); static void _check_dpttrs_() { dpttrs_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dgeqrf_(); static void _check_dgeqrf_() { dgeqrf_(); } char dgesv_(); static void _check_dgesv_() { dgesv_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } int main() { _check_dtrsen_(); _check_dgerfs_(); _check_dgges_(); _check_dtgsen_(); _check_dgesvd_(); _check_dgetrf_(); _check_dgetrs_(); _check_dgeev_(); _check_dgelss_(); _check_dsyev_(); _check_dsyevx_(); _check_dsygv_(); _check_dsygvx_(); _check_dpotrf_(); _check_dpotrs_(); _check_dstebz_(); _check_dpttrf_(); _check_dpttrs_(); _check_dstein_(); _check_dorgqr_(); _check_dgeqrf_(); _check_dgesv_(); _check_dhseqr_(); _check_dsteqr_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -llapack -lblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBLAPACK" to "1" Popping language C ================================================================================ TEST checklsame from config.packages.BlasLapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/packages/BlasLapack.py:531) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:531) Do the BLAS/LAPACK libraries have a valid lsame() function with correction binding. Lion and xcode 4.2 do not Checking for functions [lsame_] in library ['liblapack.a', 'libblas.a', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -llapack -lblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_LIBLAPACK" to "1" Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBMPICHF90" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBQUADMATH" to "1" Defined "HAVE_LIBM" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.UMFPACK(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.UMFPACK(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.CHOLMOD(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.CHOLMOD(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.ml(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.elemental(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.elemental(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional elemental Looking for ELEMENTAL in directory starting with elemental Could not locate an existing copy of elemental: ['c2html-0.9.4', 'cmake-2.8.10.2', 'sowing-1.1.16e'] Downloading elemental Executing: ['git', 'clone', 'https://github.com/elemental/Elemental', '/sandbox/balay/petsc.clone/externalpackages/elemental'] stdout: Cloning into '/sandbox/balay/petsc.clone/externalpackages/elemental'... ERROR: Could not execute "['git', 'clone', 'https://github.com/elemental/Elemental', '/sandbox/balay/petsc.clone/externalpackages/elemental']": Cloning into '/sandbox/balay/petsc.clone/externalpackages/elemental'...error: Failed connect to github.com:443; Connection timed out while accessing https://github.com/elemental/Elemental/info/refs fatal: HTTP request failed Downloading http://libelemental.org/pub/releases/elemental-0.81.tgz to /sandbox/balay/petsc.clone/externalpackages/_d_elemental-0.81.tgz Extracting /sandbox/balay/petsc.clone/externalpackages/_d_elemental-0.81.tgz Executing: cd /sandbox/balay/petsc.clone/externalpackages; chmod -R a+r elemental-0.81;find elemental-0.81 -type d -name "*" -exec chmod a+rx {} \; Looking for ELEMENTAL in directory starting with elemental Found a copy of ELEMENTAL in elemental-0.81 Looking for ELEMENTAL in directory starting with elemental Found a copy of ELEMENTAL in elemental-0.81 Pushing language C Popping language C Pushing language Cxx Executing: mpicxx -V Popping language Cxx Pushing language FC Popping language FC Have to rebuild elemental, /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/elemental != /sandbox/balay/petsc.clone/arch-elemental/conf/elemental =============================================================================== Configuring Elemental; this may take several minutes =============================================================================== Executing: cd /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental && /sandbox/balay/petsc.clone/arch-elemental/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/sandbox/balay/petsc.clone/arch-elemental -DCMAKE_VERBOSE_MAKEFILE=1 -DMATH_LIBS:STRING="-llapack -lblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm" -DMPI_C_COMPILER="mpicc" -DCMAKE_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING=" -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " -DMPI_CXX_COMPILER="mpicxx" -DCMAKE_CXX_COMPILER="mpicxx" -DCMAKE_CXX_FLAGS:STRING=" -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x " -DCMAKE_Fortran_COMPILER="mpif90" -DCMAKE_Fortran_FLAGS:STRING=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " stdout: -- The C compiler identification is GNU 4.6.3 -- The CXX compiler identification is GNU 4.6.3 -- Check for working C compiler: /usr/bin/mpicc -- Check for working C compiler: /usr/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/mpicxx -- Check for working CXX compiler: /usr/bin/mpicxx -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Build mode not specified, defaulting to PureRelease build. -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /usr/bin/mpif90 -- Check for working Fortran compiler: /usr/bin/mpif90 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/mpif90 supports Fortran 90 -- Checking whether /usr/bin/mpif90 supports Fortran 90 -- yes -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Verifying Fortran/CXX Compiler Compatibility -- Verifying Fortran/CXX Compiler Compatibility - Success -- Found MPI_C: /usr/lib/libmpich.so;/usr/lib/libopa.so;/usr/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/libcr.so;/usr/lib/x86_64-linux-gnu/libpthread.so -- Found MPI_CXX: /usr/lib/libmpichcxx.so;/usr/lib/libmpich.so;/usr/lib/libopa.so;/usr/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/libcr.so;/usr/lib/x86_64-linux-gnu/libpthread.so -- Found MPI_Fortran: /usr/lib/libmpichf90.so;/usr/lib/libmpichf90.so;/usr/lib/libmpich.so;/usr/lib/libopa.so;/usr/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/libcr.so;/usr/lib/x86_64-linux-gnu/libpthread.so -- Using user-defined MATH_LIBS=-llapack -lblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -- Looking for daxpy -- Looking for daxpy - not found -- Looking for daxpy_ -- Looking for daxpy_ - found -- Looking for dpotrf -- Looking for dpotrf - not found -- Looking for dpotrf_ -- Looking for dpotrf_ - found -- Looking for dsyevr_ -- Looking for dsyevr_ - found -- Looking for FLA_Bsvd_v_opd_var1 -- Looking for FLA_Bsvd_v_opd_var1 - not found -- Looking for MPI_Reduce_scatter -- Looking for MPI_Reduce_scatter - found -- Looking for MPI_Reduce_scatter_block -- Looking for MPI_Reduce_scatter_block - found -- Looking for MPI_Iallgather -- Looking for MPI_Iallgather - not found -- Looking for MPIX_Iallgather -- Looking for MPIX_Iallgather - not found -- Looking for MPI_Init_thread -- Looking for MPI_Init_thread - found -- Looking for MPI_Query_thread -- Looking for MPI_Query_thread - found -- Looking for MPI_Comm_set_errhandler -- Looking for MPI_Comm_set_errhandler - found -- Performing Test HAVE_MPI_IN_PLACE -- Performing Test HAVE_MPI_IN_PLACE - Success -- Performing Test HAVE___restrict__ -- Performing Test HAVE___restrict__ - Success -- Performing Test HAVE___restrict -- Performing Test HAVE___restrict - Success -- Performing Test HAVE_restrict -- Performing Test HAVE_restrict - Failed -- Using __restrict__ keyword. -- Looking for claqr0_ -- Looking for claqr0_ - found -- Looking for cuncsd_ -- Looking for cuncsd_ - found -- Looking for mkl_set_num_threads -- Looking for mkl_set_num_threads - not found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Configuring done -- Generating done -- Build files have been written to: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental =============================================================================== Compiling Elemental; this may take several minutes =============================================================================== Executing: cd /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental && make && make install stdout: /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -H/sandbox/balay/petsc.clone/externalpackages/elemental-0.81 -B/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental --check-build-system CMakeFiles/Makefile.cmake 0 /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_start /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' make -f CMakeFiles/prepare_elemental_headers.dir/build.make CMakeFiles/prepare_elemental_headers.dir/depend make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' cd /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental && /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_depends "Unix Makefiles" /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles/prepare_elemental_headers.dir/DependInfo.cmake --color= Scanning dependencies of target prepare_elemental_headers make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' make -f CMakeFiles/prepare_elemental_headers.dir/build.make CMakeFiles/prepare_elemental_headers.dir/build make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 0%] Generating include/elemental-lite.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental-lite.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental-lite.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 0%] Generating include/elemental/lapack-like.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/lapack-like.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/lapack-like.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 0%] Generating include/elemental/convex/LogDetDivergence.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/convex/LogDetDivergence.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/convex/LogDetDivergence.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 0%] Generating include/elemental/convex/LogBarrier.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/convex/LogBarrier.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/convex/LogBarrier.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 53 [ 1%] Generating include/elemental/convex/SingularValueSoftThreshold.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/convex/SingularValueSoftThreshold.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/convex/SingularValueSoftThreshold.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 1%] Generating include/elemental/convex/UnitaryCoherence.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/convex/UnitaryCoherence.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/convex/UnitaryCoherence.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 1%] Generating include/elemental/convex/SoftThreshold.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/convex/SoftThreshold.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/convex/SoftThreshold.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 1%] Generating include/elemental/control/Ricatti.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/control/Ricatti.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/control/Ricatti.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 1%] Generating include/elemental/control/Sylvester.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/control/Sylvester.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/control/Sylvester.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 1%] Generating include/elemental/control/Lyapunov.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/control/Lyapunov.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/control/Lyapunov.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 1%] Generating include/elemental/blas-like_impl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/blas-like_impl.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/blas-like_impl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 1%] Generating include/elemental/blas-like_decl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/blas-like_decl.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/blas-like_decl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 54 [ 2%] Generating include/elemental/convex_decl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/convex_decl.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/convex_decl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 2%] Generating include/elemental/lapack-like_impl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental/lapack-like_impl.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/lapack-like_impl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 2%] Generating include/elemental/matrices_impl.hpp 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/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental/convex_impl.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 46%] Generating include/elemental.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental.hpp make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 [ 46%] Built target prepare_elemental_headers make 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`/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 99 100 [ 48%] Built target prepare_pmrrr_headers make -f external/pmrrr/CMakeFiles/pmrrr.dir/build.make external/pmrrr/CMakeFiles/pmrrr.dir/depend make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' cd /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental && /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_depends "Unix Makefiles" /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr 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-I/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include -o CMakeFiles/elemental.dir/src/core/dist_matrix/circ_circ.cpp.o -c /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 54%] Building CXX object CMakeFiles/elemental.dir/src/core/dist_matrix/star_md.cpp.o /usr/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x -O3 -I/usr/include/mpich2 -I/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include -o CMakeFiles/elemental.dir/src/core/dist_matrix/star_md.cpp.o -c /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_md.cpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report 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CMakeFiles/elemental.dir/src/core/dist_matrix/vr_star.cpp.o /usr/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x -O3 -I/usr/include/mpich2 -I/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include -o CMakeFiles/elemental.dir/src/core/dist_matrix/vr_star.cpp.o -c /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp Linking CXX static library libelemental.a /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -P CMakeFiles/elemental.dir/cmake_clean_target.cmake /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_link_script CMakeFiles/elemental.dir/link.txt --verbose=1 /usr/bin/ar cr libelemental.a CMakeFiles/elemental.dir/src/blas-like/Trr2k.cpp.o CMakeFiles/elemental.dir/src/blas-like/Trrk.cpp.o CMakeFiles/elemental.dir/src/lapack-like/HermitianEig.cpp.o CMakeFiles/elemental.dir/src/lapack-like/HermitianTridiag.cpp.o CMakeFiles/elemental.dir/src/io/ComplexDisplayWindow.cpp.o CMakeFiles/elemental.dir/src/io/DisplayWindow.cpp.o CMakeFiles/elemental.dir/src/io/SpyWindow.cpp.o CMakeFiles/elemental.dir/src/core/imports/blas.cpp.o CMakeFiles/elemental.dir/src/core/imports/lapack.cpp.o CMakeFiles/elemental.dir/src/core/imports/pmrrr.cpp.o CMakeFiles/elemental.dir/src/core/imports/mpi.cpp.o CMakeFiles/elemental.dir/src/core/mpi_ops.cpp.o CMakeFiles/elemental.dir/src/core/matrix.cpp.o CMakeFiles/elemental.dir/src/core/global.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/mc_star.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/mr_mc.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/abstract.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/star_mc.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/vc_star.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/star_vc.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/star_star.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/mr_star.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/md_star.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/circ_circ.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/star_md.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/star_vr.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/star_mr.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/mc_mr.cpp.o CMakeFiles/elemental.dir/src/core/dist_matrix/vr_star.cpp.o /usr/bin/ranlib libelemental.a make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 [100%] Built target elemental make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' 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`CMakeFiles/prepare_elemental_headers.dir/build'. make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 [ 46%] Built target prepare_elemental_headers make -f external/pmrrr/CMakeFiles/prepare_pmrrr_headers.dir/build.make external/pmrrr/CMakeFiles/prepare_pmrrr_headers.dir/depend make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' cd /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental && /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_depends "Unix Makefiles" /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 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/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 [100%] Built target elemental make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_start /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' make[1]: Nothing to be done for `preinstall'. make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' Install the project... /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -P cmake_install.cmake -- Install configuration: "PureRelease" -- Installing: 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/sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrmm/UVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrmm/LVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrmm/UVar5.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syr2k.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syrk/UN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syrk/LT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syrk/LN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syrk/UT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trtrmm/LVar1.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trtrmm/UVar1.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trtrmm/Unblocked.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm/RUT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm/RUN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm/RLT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm/LLN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm/LUN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm/LLT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm/LUT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm/RLN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/LVar5.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/LVar4.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/LVar3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/LVar1.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/UVar4.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/UVar1.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/UVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/LVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/UVar3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm/UVar5.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trtrmm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Hemm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trsm/RUT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trsm/RUN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trsm/RLT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trsm/LLN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trsm/LUN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trsm/LLT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trsm/LUT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trsm/RLN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syrk.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrmm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trdtrmm/LVar1.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trdtrmm/UVar1.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trdtrmm/Unblocked.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Symm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/TwoSidedTrsm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trdtrmm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trtrsm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syr2k/UN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syr2k/LT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syr2k/LN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Syr2k/UT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Trmm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Gemm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Gemm/TT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Gemm/NT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Gemm/NN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Gemm/TN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Her2k.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Symm/RL.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Symm/RU.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Symm/LU.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3/Symm/LL.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Syr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Ger.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Trsv.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Symv.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Geru.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Symv/L.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Symv/U.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Trmv.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Gemv.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Her2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Hemv.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Her.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Trsv/UN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Trsv/LT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Trsv/LN.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Trsv/UT.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Syr2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Gemv/N.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2/Gemv/T.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/DiagonalScale.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Transpose.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Nrm2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Dot.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Adjoint.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Conjugate.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/AxpyTriangle.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/SetDiagonal.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/MakeHermitian.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Dotu.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/ScaleTrapezoid.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/MakeTriangular.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Zero.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Scale.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Copy.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/MakeReal.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/MakeSymmetric.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/DiagonalSolve.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/Axpy.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/blas-like/level1/MakeTrapezoidal.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/TriangularInverse/LVar3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/TriangularInverse/UVar3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Sign.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Schur/InverseFreeSDC.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Schur/SDC.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LU/SolveAfter.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LU/Panel.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LU/Local.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/PivotParity.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ComposePivots.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LeastSquares.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Determinant/LUPartialPiv.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Determinant/Cholesky.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LU.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ConditionNumber.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ExpandPackedReflectors.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Pseudoinverse.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/TwoLowerBound.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/Entrywise.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/KyFan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/Infinity.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/One.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/Max.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/Two.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/Frobenius.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/Zero.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/EntrywiseOne.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/Schatten.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/TwoUpperBound.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm/Nuclear.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HilbertSchmidt.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HPDSolve.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/GaussianElimination.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/PanelHouseholder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/Explicit.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/ApplyQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/BusingerGolub.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/Cholesky.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/Householder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LDL.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ/PanelHouseholder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ/Explicit.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ/ApplyQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ/Householder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ExpandPackedReflectors/LV.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LUVB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LLHB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LLVF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RUVF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LLVB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LUVF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LLHF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LUHB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RLHF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RLVF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RUHB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RUVB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/Util.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RUHF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RLHB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LUHF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RLVB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ/PanelHouseholder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ/ApplyQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ/Cholesky.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ/Householder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/PanelU.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/L.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/PanelL.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/U.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/LUnb.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/Apply.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/UUnb.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Skeleton.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Inverse.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Reflector.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Polar.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD/Util.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD/Chan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD/GolubReinsch.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD/Thresholded.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Reflector/Row.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Reflector/Col.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianEig.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianTridiag.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Inverse/CholeskyLVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Inverse/CholeskyUVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Inverse/LUPartialPiv.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/TriangularInverse.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/SolveAfter.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/LVar3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/LVar3Square.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/UVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/UVar3Square.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/LVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/UVar3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SquareRoot.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianGenDefiniteEig.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Polar/QDWH.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Polar/SVD.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianFunction.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SkewHermitianEig.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ID.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Schur.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Hadamard.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianTridiag/ApplyQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianEig/Sort.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LDL/Var3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Determinant.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyRowPivots.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyColumnPivots.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Trace.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Helmholtz.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Zeros.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/CauchyLike.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/HermitianFromEVD.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Parter.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Diagonal.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/NormalUniformSpectrum.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Grcar.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Lehmer.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/MinIJ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Hilbert.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Gear.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Jordan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Riemann.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Lotkin.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Laplacian.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Uniform.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Fiedler.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Walsh.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Redheffer.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/HermitianUniformSpectrum.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/ExtendedKahan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Lauchli.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Cauchy.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Identity.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/NormalFromEVD.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/KMS.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Ones.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Forsythe.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Wilkinson.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Toeplitz.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Pei.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Egorov.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/GKS.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Fourier.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Legendre.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Kahan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Hanowa.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/GCDMatrix.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/OneTwoOne.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Hankel.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/TriW.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Ris.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Circulant.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/control_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/control.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/Display.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/Spy.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/spy_window_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/complex_display_window_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/display_window_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/spy_widget_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/ColorMap.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/Print.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/Write.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/spy_widget_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/display_widget_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/display_widget_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/control_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/grid_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/view_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/axpy_interface.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/indexing_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/axpy_interface_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/complex_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/repartition_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/complex_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/mpi_choice.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/pmrrr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/choice.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/mpi.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/lapack.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/blas.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/flame.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/partition_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/types_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/memory_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/random_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/memory_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/timer_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/axpy_interface_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/partition_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/types_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/ReduceComm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/environment_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/complex.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/matrix.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/mr_mc.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/circ_circ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_mr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_vc.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/mr_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/mc_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_md.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/mc_mr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/vc_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/abstract.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/vr_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_vr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_mc.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/md_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/timer_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/environment_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/repartition_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/indexing_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/random_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/matrix_forward_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/grid_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix_forward_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/slide_partition_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/slide_partition_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/view_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/convex_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/lib/libpmrrr.a -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/global.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/rrr.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/tasks.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/process_task.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/queue.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/plarre.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/plarrv.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/structs.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/pmrrr.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/counter.h ********Output of running make on elemental follows ******* -- The C compiler identification is GNU 4.6.3 -- The CXX compiler identification is GNU 4.6.3 -- Check for working C compiler: /usr/bin/mpicc -- Check for working C compiler: /usr/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/mpicxx -- Check for working CXX compiler: /usr/bin/mpicxx -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Build mode not specified, defaulting to PureRelease build. -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /usr/bin/mpif90 -- Check for working Fortran compiler: /usr/bin/mpif90 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/mpif90 supports Fortran 90 -- Checking whether /usr/bin/mpif90 supports Fortran 90 -- yes -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Verifying Fortran/CXX Compiler Compatibility -- Verifying Fortran/CXX Compiler Compatibility - Success -- Found MPI_C: /usr/lib/libmpich.so;/usr/lib/libopa.so;/usr/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/libcr.so;/usr/lib/x86_64-linux-gnu/libpthread.so -- Found MPI_CXX: /usr/lib/libmpichcxx.so;/usr/lib/libmpich.so;/usr/lib/libopa.so;/usr/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/libcr.so;/usr/lib/x86_64-linux-gnu/libpthread.so -- Found MPI_Fortran: /usr/lib/libmpichf90.so;/usr/lib/libmpichf90.so;/usr/lib/libmpich.so;/usr/lib/libopa.so;/usr/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/libcr.so;/usr/lib/x86_64-linux-gnu/libpthread.so -- Using user-defined MATH_LIBS=-llapack -lblas -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -- Looking for daxpy -- Looking for daxpy - not found -- Looking for daxpy_ -- Looking for daxpy_ - found -- Looking for dpotrf -- Looking for dpotrf - not found -- Looking for dpotrf_ -- Looking for dpotrf_ - found -- Looking for dsyevr_ -- Looking for dsyevr_ - found -- Looking for FLA_Bsvd_v_opd_var1 -- Looking for FLA_Bsvd_v_opd_var1 - not found -- Looking for MPI_Reduce_scatter -- Looking for MPI_Reduce_scatter - found -- Looking for MPI_Reduce_scatter_block -- Looking for MPI_Reduce_scatter_block - found -- Looking for MPI_Iallgather -- Looking for MPI_Iallgather - not found -- Looking for MPIX_Iallgather -- Looking for MPIX_Iallgather - not found -- Looking for MPI_Init_thread -- Looking for MPI_Init_thread - found -- Looking for MPI_Query_thread -- Looking for MPI_Query_thread - found -- Looking for MPI_Comm_set_errhandler -- Looking for MPI_Comm_set_errhandler - found -- Performing Test HAVE_MPI_IN_PLACE -- Performing Test HAVE_MPI_IN_PLACE - Success -- Performing Test HAVE___restrict__ -- Performing Test HAVE___restrict__ - Success -- Performing Test HAVE___restrict -- Performing Test HAVE___restrict - Success -- Performing Test HAVE_restrict -- Performing Test HAVE_restrict - Failed -- Using __restrict__ keyword. -- Looking for claqr0_ -- Looking for claqr0_ - found -- Looking for cuncsd_ -- Looking for cuncsd_ - found -- Looking for mkl_set_num_threads -- Looking for mkl_set_num_threads - not found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Configuring done -- Generating done -- Build files have been written to: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/sandbox/balay/petsc.clone/arch-elemental/bin/cmake -H/sandbox/balay/petsc.clone/externalpackages/elemental-0.81 -B/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental --check-build-system CMakeFiles/Makefile.cmake 0 /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_start /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' make -f CMakeFiles/prepare_elemental_headers.dir/build.make CMakeFiles/prepare_elemental_headers.dir/depend make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' cd /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental && /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_depends "Unix Makefiles" /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles/prepare_elemental_headers.dir/DependInfo.cmake --color= Scanning dependencies of target prepare_elemental_headers make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' make -f CMakeFiles/prepare_elemental_headers.dir/build.make CMakeFiles/prepare_elemental_headers.dir/build make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 0%] Generating include/elemental-lite.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E copy /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/include/elemental-lite.hpp /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/include/elemental-lite.hpp /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles [ 0%] Generating include/elemental/lapack-like.hpp 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/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 50 51 52 [ 51%] Built target pmrrr make -f CMakeFiles/elemental.dir/build.make CMakeFiles/elemental.dir/depend make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' cd /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental && /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_depends "Unix Makefiles" /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles/elemental.dir/DependInfo.cmake --color= make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' make -f CMakeFiles/elemental.dir/build.make CMakeFiles/elemental.dir/build make[2]: Entering directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' make[2]: Nothing to be done for `CMakeFiles/elemental.dir/build'. make[2]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_report /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 [100%] Built target elemental make[1]: Leaving directory `/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental' /sandbox/balay/petsc.clone/arch-elemental/bin/cmake -E cmake_progress_start /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering 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/sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/ApplyQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/BusingerGolub.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/Cholesky.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/QR/Householder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LDL.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ/PanelHouseholder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ/Explicit.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ/ApplyQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ/Householder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ExpandPackedReflectors/LV.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LUVB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LLHB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LLVF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RUVF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LLVB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LUVF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LLHF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LUHB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RLHF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RLVF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RUHB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RUVB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/Util.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RUHF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RLHB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/LUHF.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors/RLVB.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ/PanelHouseholder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ/ApplyQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ/Cholesky.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ/Householder.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/PanelU.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/L.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/PanelL.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/U.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/LUnb.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/Apply.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Bidiag/UUnb.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyPackedReflectors.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Skeleton.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Inverse.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Reflector.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Polar.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD/Util.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD/Chan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD/GolubReinsch.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD/Thresholded.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Reflector/Row.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Reflector/Col.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SVD.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianEig.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianTridiag.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Inverse/CholeskyLVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Inverse/CholeskyUVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Inverse/LUPartialPiv.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/TriangularInverse.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/SolveAfter.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/LVar3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/LVar3Square.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/UVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/UVar3Square.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/LVar2.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky/UVar3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SquareRoot.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianGenDefiniteEig.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Polar/QDWH.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Polar/SVD.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianFunction.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/SkewHermitianEig.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Cholesky.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/RQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ID.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Schur.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Norm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Hadamard.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianTridiag/ApplyQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LQ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/HermitianEig/Sort.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/LDL/Var3.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Determinant.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyRowPivots.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/ApplyColumnPivots.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like/Trace.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/lapack-like_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Helmholtz.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Zeros.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/CauchyLike.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/HermitianFromEVD.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Parter.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Diagonal.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/NormalUniformSpectrum.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Grcar.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Lehmer.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/MinIJ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Hilbert.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Gear.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Jordan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Riemann.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Lotkin.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Laplacian.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Uniform.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Fiedler.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Walsh.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Redheffer.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/HermitianUniformSpectrum.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/ExtendedKahan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Lauchli.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Cauchy.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Identity.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/NormalFromEVD.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/KMS.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Ones.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Forsythe.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Wilkinson.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Toeplitz.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Pei.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Egorov.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/GKS.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Fourier.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Legendre.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Kahan.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Hanowa.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/GCDMatrix.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/OneTwoOne.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Hankel.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/TriW.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Ris.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices/Circulant.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/matrices_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/control_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/control.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/Display.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/Spy.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/spy_window_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/complex_display_window_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/display_window_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/spy_widget_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/ColorMap.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/Print.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/Write.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/spy_widget_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/display_widget_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io/display_widget_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/io.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/control_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/grid_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/view_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/axpy_interface.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/indexing_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/axpy_interface_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/complex_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/repartition_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/complex_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/mpi_choice.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/pmrrr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/choice.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/mpi.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/lapack.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/blas.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/imports/flame.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/partition_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/types_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/memory_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/random_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/memory_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/timer_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/axpy_interface_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/partition_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/types_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/ReduceComm.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/environment_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/complex.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/matrix.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/mr_mc.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/circ_circ.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_mr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_vc.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/mr_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/mc_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_md.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/mc_mr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/vc_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/abstract.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/vr_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_vr.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/star_mc.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix/md_star.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/timer_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/environment_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/repartition_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/indexing_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/random_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/matrix_forward_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/grid_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/dist_matrix_forward_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/slide_partition_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/slide_partition_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/core/view_decl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental/convex_impl.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/elemental.hpp -- Installing: /sandbox/balay/petsc.clone/arch-elemental/lib/libpmrrr.a -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/global.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/rrr.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/tasks.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/process_task.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/queue.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/plarre.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/plarrv.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/structs.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/pmrrr.h -- Installing: /sandbox/balay/petsc.clone/arch-elemental/include/counter.h/sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_r_task.c: In function ‘PMR_process_r_task’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_r_task.c:162:20: warning: ‘savegap’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c: In function ‘refine_eigvals.isra.1’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c:447:22: warning: ‘savegap’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c: In function ‘communicate_refined_eigvals.isra.2’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c:495:20: warning: ‘other_begin’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c: In function ‘create_subtasks.isra.3’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c:748:15: warning: ‘sn_first’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c:738:9: warning: ‘sn_size’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c:737:9: warning: ‘sn_last’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c: In function ‘PMR_process_c_task’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c:139:17: warning: ‘rf_end’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_c_task.c:139:17: warning: ‘rf_begin’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_s_task.c: In function ‘PMR_process_s_task’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_s_task.c:263:14: warning: ‘bstw’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/process_s_task.c:211:27: warning: ‘bstres’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c: In function ‘handle_small_cases’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c:430:6: warning: passing argument 1 of ‘dstemr_’ discards ‘const’ qualifier from pointer target type [enabled by default] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr/include/pmrrr.h:316:1: note: expected ‘char *’ but argument is of type ‘const char *’ /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c:430:6: warning: passing argument 2 of ‘dstemr_’ discards ‘const’ qualifier from pointer target type [enabled by default] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr/include/pmrrr.h:316:1: note: expected ‘char *’ but argument is of type ‘const char *’ /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c: In function ‘scale_matrix’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c:500:3: warning: passing argument 1 of ‘dlanst_’ discards ‘const’ qualifier from pointer target type [enabled by default] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr/include/pmrrr.h:272:1: note: expected ‘char *’ but argument is of type ‘const char *’ /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c: In function ‘handle_small_cases.isra.1’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c:396:11: warning: ‘Z_tmp’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c: In function ‘PMRRR’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c:337:9: warning: ‘E2copy’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/pmrrr.c:336:9: warning: ‘Dcopy’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c: In function ‘eigval_subset_proc’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c:527:6: warning: passing argument 1 of ‘dlarrd_’ discards ‘const’ qualifier from pointer target type [enabled by default] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr/include/pmrrr.h:283:1: note: expected ‘char *’ but argument is of type ‘const char *’ /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c:527:6: warning: passing argument 2 of ‘dlarrd_’ discards ‘const’ qualifier from pointer target type [enabled by default] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr/include/pmrrr.h:283:1: note: expected ‘char *’ but argument is of type ‘const char *’ /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c:604:6: warning: passing argument 1 of ‘dlarrc_’ discards ‘const’ qualifier from pointer target type [enabled by default] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr/include/pmrrr.h:279:1: note: expected ‘char *’ but argument is of type ‘const char *’ /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c: In function ‘eigval_subset_thread_a’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c:888:4: warning: passing argument 1 of ‘dlarrd_’ discards ‘const’ qualifier from pointer target type [enabled by default] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr/include/pmrrr.h:283:1: note: expected ‘char *’ but argument is of type ‘const char *’ /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c:888:4: warning: passing argument 2 of ‘dlarrd_’ discards ‘const’ qualifier from pointer target type [enabled by default] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/arch-elemental/external/pmrrr/include/pmrrr.h:283:1: note: expected ‘char *’ but argument is of type ‘const char *’ /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c: In function ‘plarre’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c:336:5: warning: ‘isize’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c:270:30: warning: ‘ilast’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarre.c:270:30: warning: ‘ifirst’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarrv.c: In function ‘assign_to_proc.isra.0’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarrv.c:248:10: warning: ‘iend’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarrv.c: In function ‘init_workQ.isra.1’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarrv.c:439:13: warning: ‘sn_last’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/external/pmrrr/src/plarrv.c:451:17: warning: ‘sn_first’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = int, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp:1785:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = float, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp:1785:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = double, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp:1810:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp:1785:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mr_mc.cpp:1810:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = int, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp:1322:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = float, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp:1322:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = double, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp:1343:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp:1322:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vc_star.cpp:1343:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = int, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp:1061:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = float, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp:1061:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = double, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp:1082:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp:1061:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vc.cpp:1082:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = int, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp:496:18: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = float, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp:496:18: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = double, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp:496:18: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp:496:18: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/circ_circ.cpp:496:18: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = int, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp:1149:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = float, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp:1149:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = double, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp:1170:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp:1149:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/star_vr.cpp:1170:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = int, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp:2233:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = float, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp:2233:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = double, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp:2258:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp:2233:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/mc_mr.cpp:2258:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = int, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp:990:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = float, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp:990:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = double, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp:1011:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp:990:1: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp: In member function ‘const elem::DistMatrix& elem::DistMatrix::operator=(const elem::DistMatrix&) [with T = elem::Complex, Int = int]’: /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/src/core/dist_matrix/vr_star.cpp:1011:8: warning: ‘recvBuf’ may be used uninitialized in this function [-Wuninitialized] ********End of Output of running make on elemental ******* Executing: cp -f /sandbox/balay/petsc.clone/externalpackages/elemental-0.81/elemental /sandbox/balay/petsc.clone/arch-elemental/conf/elemental Not checking for library in Download ELEMENTAL: ['/sandbox/balay/petsc.clone/arch-elemental/lib/libelemental.a', 'libpmrrr.a'] because no functions given to check for ================================================================================ TEST check from config.libraries(/sandbox/balay/petsc.clone/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library ['/sandbox/balay/petsc.clone/arch-elemental/lib/libelemental.a', 'libpmrrr.a'] ['liblapack.a', 'libblas.a', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Checking for headers Download ELEMENTAL: ['/sandbox/balay/petsc.clone/arch-elemental/include', '/usr/include/mpich2'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/sandbox/balay/petsc.clone/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['elemental.hpp'] in ['/sandbox/balay/petsc.clone/arch-elemental/include', '/usr/include/mpich2'] Checking include with compiler flags var CPPFLAGS ['/sandbox/balay/petsc.clone/arch-elemental/include', '/usr/include/mpich2', '/usr/include/mpich2'] Executing: mpicxx -E -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.headers -std=c++0x -I/sandbox/balay/petsc.clone/arch-elemental/include -I/usr/include/mpich2 -I/usr/include/mpich2 /tmp/petsc-KqLK70/config.headers/conftest.cc stdout: # 1 "/tmp/petsc-KqLK70/config.headers/conftest.cc" # 1 "" # 1 "" # 1 "/tmp/petsc-KqLK70/config.headers/conftest.cc" # 1 "/tmp/petsc-KqLK70/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-KqLK70/config.headers/conftest.cc" 2 # 1 "/tmp/petsc-KqLK70/config.headers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-KqLK70/config.headers/conftest.cc" 2 # 1 "/sandbox/balay/petsc.clone/arch-elemental/include/elemental.hpp" 1 # 9 "/sandbox/balay/petsc.clone/arch-elemental/include/elemental.hpp" # 1 "/sandbox/balay/petsc.clone/arch-elemental/include/elemental/config.h" 1 # 14 "/sandbox/balay/petsc.clone/arch-elemental/include/elemental.hpp" 2 # 1 "/sandbox/balay/petsc.clone/arch-elemental/include/elemental/FCMangle.h" 1 # 16 "/sandbox/balay/petsc.clone/arch-elemental/include/elemental.hpp" 2 # 1 "/sandbox/balay/petsc.clone/arch-elemental/include/elemental/core.hpp" 1 # 9 "/sandbox/balay/petsc.clone/arch-elemental/include/elemental/core.hpp" # 1 "/usr/include/mpich2/mpi.h" 1 # 14 "/usr/include/mpich2/mpi.h" extern "C" { # 23 "/usr/include/mpich2/mpi.h" typedef int MPI_Datatype; # 124 "/usr/include/mpich2/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 210 "/usr/include/mpich2/mpi.h" extern int MPICH_ATTR_FAILED_PROCESSES; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; # 227 "/usr/include/mpich2/mpi.h" typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; # 255 "/usr/include/mpich2/mpi.h" typedef int MPI_Errhandler; # 276 "/usr/include/mpich2/mpi.h" typedef int MPI_Request; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); # 327 "/usr/include/mpich2/mpi.h" enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18 }; typedef int MPI_Info; # 372 "/usr/include/mpich2/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; # 385 "/usr/include/mpich2/mpi.h" typedef long long MPI_Offset; typedef struct MPI_Status { int count; int cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; # 441 "/usr/include/mpich2/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; # 460 "/usr/include/mpich2/mpi.h" typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); # 546 "/usr/include/mpich2/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); # 569 "/usr/include/mpich2/mpi.h" int MPI_Send(void*, int, MPI_Datatype, int, int, MPI_Comm); int MPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *); int MPI_Get_count(MPI_Status *, MPI_Datatype, int *); int MPI_Bsend(void*, int, MPI_Datatype, int, int, MPI_Comm); int MPI_Ssend(void*, int, MPI_Datatype, int, int, MPI_Comm); int MPI_Rsend(void*, int, MPI_Datatype, int, int, MPI_Comm); int MPI_Buffer_attach( void*, int); int MPI_Buffer_detach( void*, int *); int MPI_Isend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Ibsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Issend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Irsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Wait(MPI_Request *, MPI_Status *); int MPI_Test(MPI_Request *, int *, MPI_Status *); int MPI_Request_free(MPI_Request *); int MPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int MPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Waitall(int, MPI_Request *, MPI_Status *); int MPI_Testall(int, MPI_Request *, int *, MPI_Status *); int MPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int MPI_Probe(int, int, MPI_Comm, MPI_Status *); int MPI_Cancel(MPI_Request *); int MPI_Test_cancelled(MPI_Status *, int *); int MPI_Send_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int MPI_Bsend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *); int MPI_Ssend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *); int MPI_Rsend_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *); int MPI_Recv_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *); int MPI_Start(MPI_Request *); int MPI_Startall(int, MPI_Request *); int MPI_Sendrecv(void *, int, MPI_Datatype,int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *); int MPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *); int MPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int MPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int MPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int MPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int MPI_Address(void*, MPI_Aint *); int MPI_Type_extent(MPI_Datatype, MPI_Aint *); int MPI_Type_size(MPI_Datatype, int *); int MPI_Type_lb(MPI_Datatype, MPI_Aint *); int MPI_Type_ub(MPI_Datatype, MPI_Aint *); int MPI_Type_commit(MPI_Datatype *); int MPI_Type_free(MPI_Datatype *); int MPI_Get_elements(MPI_Status *, MPI_Datatype, int *); int MPI_Pack(void*, int, MPI_Datatype, void *, int, int *, MPI_Comm); int MPI_Unpack(void*, int, int *, void *, int, MPI_Datatype, MPI_Comm); int MPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int MPI_Barrier(MPI_Comm ); int MPI_Bcast(void*, int, MPI_Datatype, int, MPI_Comm ); int MPI_Gather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int MPI_Gatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm); int MPI_Scatter(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int MPI_Scatterv(void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int MPI_Allgather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm); int MPI_Allgatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm); int MPI_Alltoall(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm); int MPI_Alltoallv(void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm); int MPI_Reduce(void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm); int MPI_Op_create(MPI_User_function *, int, MPI_Op *); int MPI_Op_free( MPI_Op *); int MPI_Allreduce(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm); int MPI_Reduce_scatter(void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm); int MPI_Scan(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm ); int MPI_Group_size(MPI_Group, int *); int MPI_Group_rank(MPI_Group, int *); int MPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *); int MPI_Group_compare(MPI_Group, MPI_Group, int *); int MPI_Comm_group(MPI_Comm, MPI_Group *); int MPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_free(MPI_Group *); int MPI_Comm_size(MPI_Comm, int *); int MPI_Comm_rank(MPI_Comm, int *); int MPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int MPI_Comm_dup(MPI_Comm, MPI_Comm *); int MPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int MPI_Comm_free(MPI_Comm *); int MPI_Comm_test_inter(MPI_Comm, int *); int MPI_Comm_remote_size(MPI_Comm, int *); int MPI_Comm_remote_group(MPI_Comm, MPI_Group *); int MPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm * ); int MPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int MPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int MPI_Keyval_free(int *); int MPI_Attr_put(MPI_Comm, int, void*); int MPI_Attr_get(MPI_Comm, int, void *, int *); int MPI_Attr_delete(MPI_Comm, int); int MPI_Topo_test(MPI_Comm, int *); int MPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Dims_create(int, int, int *); int MPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Graphdims_get(MPI_Comm, int *, int *); int MPI_Graph_get(MPI_Comm, int, int, int *, int *); int MPI_Cartdim_get(MPI_Comm, int *); int MPI_Cart_get(MPI_Comm, int, int *, int *, int *); int MPI_Cart_rank(MPI_Comm, int *, int *); int MPI_Cart_coords(MPI_Comm, int, int, int *); int MPI_Graph_neighbors_count(MPI_Comm, int, int *); int MPI_Graph_neighbors(MPI_Comm, int, int, int *); int MPI_Cart_shift(MPI_Comm, int, int, int *, int *); int MPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int MPI_Cart_map(MPI_Comm, int, int *, int *, int *); int MPI_Graph_map(MPI_Comm, int, int *, int *, int *); int MPI_Get_processor_name(char *, int *); int MPI_Get_version(int *, int *); int MPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int MPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int MPI_Errhandler_free(MPI_Errhandler *); int MPI_Error_string(int, char *, int *); int MPI_Error_class(int, int *); double MPI_Wtime(void); double MPI_Wtick(void); double PMPI_Wtime(void); double PMPI_Wtick(void); int MPI_Init(int *, char ***); int MPI_Finalize(void); int MPI_Initialized(int *); int MPI_Abort(MPI_Comm, int); int MPI_Pcontrol(const int, ...); int MPIR_Dup_fn ( MPI_Comm, int, void *, void *, void *, int * ); int MPI_Close_port(char *); int MPI_Comm_accept(char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_connect(char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_disconnect(MPI_Comm *); int MPI_Comm_get_parent(MPI_Comm *); int MPI_Comm_join(int, MPI_Comm *); int MPI_Comm_spawn(char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int MPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int MPI_Lookup_name(char *, MPI_Info, char *); int MPI_Open_port(MPI_Info, char *); int MPI_Publish_name(char *, MPI_Info, char *); int MPI_Unpublish_name(char *, MPI_Info, char *); int MPI_Accumulate(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win); int MPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win); int MPI_Put(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win); int MPI_Win_complete(MPI_Win); int MPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int MPI_Win_fence(int, MPI_Win); int MPI_Win_free(MPI_Win *); int MPI_Win_get_group(MPI_Win, MPI_Group *); int MPI_Win_lock(int, int, int, MPI_Win); int MPI_Win_post(MPI_Group, int, MPI_Win); int MPI_Win_start(MPI_Group, int, MPI_Win); int MPI_Win_test(MPI_Win, int *); int MPI_Win_unlock(int, MPI_Win); int MPI_Win_wait(MPI_Win); int MPI_Alltoallw(void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int MPI_Exscan(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Add_error_class(int *); int MPI_Add_error_code(int, int *); int MPI_Add_error_string(int, char *); int MPI_Comm_call_errhandler(MPI_Comm, int); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int MPI_Comm_delete_attr(MPI_Comm, int); int MPI_Comm_free_keyval(int *); int MPI_Comm_get_attr(MPI_Comm, int, void *, int *); int MPI_Comm_get_name(MPI_Comm, char *, int *); int MPI_Comm_set_attr(MPI_Comm, int, void *); int MPI_Comm_set_name(MPI_Comm, char *); int MPI_File_call_errhandler(MPI_File, int); int MPI_Grequest_complete(MPI_Request); int MPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int MPI_Init_thread(int *, char ***, int, int *); int MPI_Is_thread_main(int *); int MPI_Query_thread(int *); int MPI_Status_set_cancelled(MPI_Status *, int); int MPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int MPI_Type_delete_attr(MPI_Datatype, int); int MPI_Type_dup(MPI_Datatype, MPI_Datatype *); int MPI_Type_free_keyval(int *); int MPI_Type_get_attr(MPI_Datatype, int, void *, int *); int MPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int MPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int MPI_Type_get_name(MPI_Datatype, char *, int *); int MPI_Type_set_attr(MPI_Datatype, int, void *); int MPI_Type_set_name(MPI_Datatype, char *); int MPI_Type_match_size( int, int, MPI_Datatype *); int MPI_Win_call_errhandler(MPI_Win, int); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int MPI_Win_delete_attr(MPI_Win, int); int MPI_Win_free_keyval(int *); int MPI_Win_get_attr(MPI_Win, int, void *, int *); int MPI_Win_get_name(MPI_Win, char *, int *); int MPI_Win_set_attr(MPI_Win, int, void *); int MPI_Win_set_name(MPI_Win, char *); # 823 "/usr/include/mpich2/mpi.h" int MPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int MPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int MPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int MPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int MPI_File_set_errhandler(MPI_File, MPI_Errhandler); int MPI_Finalized(int *); int MPI_Free_mem(void *); int MPI_Get_address(void *, MPI_Aint *); int MPI_Info_create(MPI_Info *); int MPI_Info_delete(MPI_Info, char *); int MPI_Info_dup(MPI_Info, MPI_Info *); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info, char *, int, char *, int *); int MPI_Info_get_nkeys(MPI_Info, int *); int MPI_Info_get_nthkey(MPI_Info, int, char *); int MPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int MPI_Info_set(MPI_Info, char *, char *); int MPI_Pack_external(char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *); int MPI_Pack_external_size(char *, int, MPI_Datatype, MPI_Aint *); int MPI_Request_get_status(MPI_Request, int *, MPI_Status *); int MPI_Status_c2f(MPI_Status *, MPI_Fint *); int MPI_Status_f2c(MPI_Fint *, MPI_Status *); int MPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int MPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int MPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Unpack_external(char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype); int MPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int MPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int MPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int MPI_Type_create_f90_integer( int, MPI_Datatype * ); int MPI_Type_create_f90_real( int, int, MPI_Datatype * ); int MPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int MPI_Reduce_local(void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); # 891 "/usr/include/mpich2/mpi.h" int PMPI_Send(void*, int, MPI_Datatype, int, int, MPI_Comm); int PMPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *); int PMPI_Get_count(MPI_Status *, MPI_Datatype, int *); int PMPI_Bsend(void*, int, MPI_Datatype, int, int, MPI_Comm); int PMPI_Ssend(void*, int, MPI_Datatype, int, int, MPI_Comm); int PMPI_Rsend(void*, int, MPI_Datatype, int, int, MPI_Comm); int PMPI_Buffer_attach( void* buffer, int); int PMPI_Buffer_detach( void* buffer, int *); int PMPI_Isend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Ibsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Issend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Irsend(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPI_Test(MPI_Request *, int *, MPI_Status *); int PMPI_Request_free(MPI_Request *); int PMPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Waitall(int, MPI_Request *, MPI_Status *); int PMPI_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int PMPI_Probe(int, int, MPI_Comm, MPI_Status *); int PMPI_Cancel(MPI_Request *); int PMPI_Test_cancelled(MPI_Status *, int *); int PMPI_Send_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Bsend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Ssend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Rsend_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Recv_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *); int PMPI_Start(MPI_Request *); int PMPI_Startall(int, MPI_Request *); int PMPI_Sendrecv(void *, int, MPI_Datatype, int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *); int PMPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *); int PMPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int PMPI_Address(void*, MPI_Aint *); int PMPI_Type_extent(MPI_Datatype, MPI_Aint *); int PMPI_Type_size(MPI_Datatype, int *); int PMPI_Type_lb(MPI_Datatype, MPI_Aint *); int PMPI_Type_ub(MPI_Datatype, MPI_Aint *); int PMPI_Type_commit(MPI_Datatype *); int PMPI_Type_free(MPI_Datatype *); int PMPI_Get_elements(MPI_Status *, MPI_Datatype, int *); int PMPI_Pack(void*, int, MPI_Datatype, void *, int, int *, MPI_Comm); int PMPI_Unpack(void*, int, int *, void *, int, MPI_Datatype, MPI_Comm); int PMPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int PMPI_Barrier(MPI_Comm ); int PMPI_Bcast(void* buffer, int, MPI_Datatype, int, MPI_Comm ); int PMPI_Gather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int PMPI_Gatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm); int PMPI_Scatter(void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int PMPI_Scatterv(void* , int *, int *displs, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm); int PMPI_Allgather(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm); int PMPI_Allgatherv(void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm); int PMPI_Alltoall(void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm); int PMPI_Alltoallv(void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm); int PMPI_Reduce(void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm); int PMPI_Op_create(MPI_User_function *, int, MPI_Op *); int PMPI_Op_free( MPI_Op *); int PMPI_Allreduce(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm); int PMPI_Reduce_scatter(void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm); int PMPI_Scan(void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm ); int PMPI_Group_size(MPI_Group, int *); int PMPI_Group_rank(MPI_Group, int *); int PMPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *); int PMPI_Group_compare(MPI_Group, MPI_Group, int *); int PMPI_Comm_group(MPI_Comm, MPI_Group *); int PMPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_free(MPI_Group *); int PMPI_Comm_size(MPI_Comm, int *); int PMPI_Comm_rank(MPI_Comm, int *); int PMPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int PMPI_Comm_dup(MPI_Comm, MPI_Comm *); int PMPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int PMPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int PMPI_Comm_free(MPI_Comm *); int PMPI_Comm_test_inter(MPI_Comm, int *); int PMPI_Comm_remote_size(MPI_Comm, int *); int PMPI_Comm_remote_group(MPI_Comm, MPI_Group *); int PMPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm *); int PMPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int PMPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int PMPI_Keyval_free(int *); int PMPI_Attr_put(MPI_Comm, int, void*); int PMPI_Attr_get(MPI_Comm, int, void *, int *); int PMPI_Attr_delete(MPI_Comm, int); int PMPI_Topo_test(MPI_Comm, int *); int PMPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Dims_create(int, int, int *); int PMPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Graphdims_get(MPI_Comm, int *, int *); int PMPI_Graph_get(MPI_Comm, int, int, int *, int *); int PMPI_Cartdim_get(MPI_Comm, int *); int PMPI_Cart_get(MPI_Comm, int, int *, int *, int *); int PMPI_Cart_rank(MPI_Comm, int *, int *); int PMPI_Cart_coords(MPI_Comm, int, int, int *); int PMPI_Graph_neighbors_count(MPI_Comm, int, int *); int PMPI_Graph_neighbors(MPI_Comm, int, int, int *); int PMPI_Cart_shift(MPI_Comm, int, int, int *, int *); int PMPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int PMPI_Cart_map(MPI_Comm, int, int *, int *, int *); int PMPI_Graph_map(MPI_Comm, int, int *, int *, int *); int PMPI_Get_processor_name(char *, int *); int PMPI_Get_version(int *, int *); int PMPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int PMPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int PMPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int PMPI_Errhandler_free(MPI_Errhandler *); int PMPI_Error_string(int, char *, int *); int PMPI_Error_class(int, int *); int PMPI_Init(int *, char ***); int PMPI_Finalize(void); int PMPI_Initialized(int *); int PMPI_Abort(MPI_Comm, int); int PMPI_Pcontrol(const int, ...); int PMPI_Close_port(char *); int PMPI_Comm_accept(char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_connect(char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_disconnect(MPI_Comm *); int PMPI_Comm_get_parent(MPI_Comm *); int PMPI_Comm_join(int, MPI_Comm *); int PMPI_Comm_spawn(char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int PMPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int PMPI_Lookup_name(char *, MPI_Info, char *); int PMPI_Open_port(MPI_Info, char *); int PMPI_Publish_name(char *, MPI_Info, char *); int PMPI_Unpublish_name(char *, MPI_Info, char *); int PMPI_Accumulate(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win); int PMPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win); int PMPI_Put(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win); int PMPI_Win_complete(MPI_Win); int PMPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int PMPI_Win_fence(int, MPI_Win); int PMPI_Win_free(MPI_Win *); int PMPI_Win_get_group(MPI_Win, MPI_Group *); int PMPI_Win_lock(int, int, int, MPI_Win); int PMPI_Win_post(MPI_Group, int, MPI_Win); int PMPI_Win_start(MPI_Group, int, MPI_Win); int PMPI_Win_test(MPI_Win, int *); int PMPI_Win_unlock(int, MPI_Win); int PMPI_Win_wait(MPI_Win); int PMPI_Alltoallw(void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int PMPI_Exscan(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Add_error_class(int *); int PMPI_Add_error_code(int, int *); int PMPI_Add_error_string(int, char *); int PMPI_Comm_call_errhandler(MPI_Comm, int); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int PMPI_Comm_delete_attr(MPI_Comm, int); int PMPI_Comm_free_keyval(int *); int PMPI_Comm_get_attr(MPI_Comm, int, void *, int *); int PMPI_Comm_get_name(MPI_Comm, char *, int *); int PMPI_Comm_set_attr(MPI_Comm, int, void *); int PMPI_Comm_set_name(MPI_Comm, char *); int PMPI_File_call_errhandler(MPI_File, int); int PMPI_Grequest_complete(MPI_Request); int PMPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int PMPI_Init_thread(int *, char ***, int, int *); int PMPI_Is_thread_main(int *); int PMPI_Query_thread(int *); int PMPI_Status_set_cancelled(MPI_Status *, int); int PMPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int PMPI_Type_delete_attr(MPI_Datatype, int); int PMPI_Type_dup(MPI_Datatype, MPI_Datatype *); int PMPI_Type_free_keyval(int *); int PMPI_Type_get_attr(MPI_Datatype, int, void *, int *); int PMPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int PMPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int PMPI_Type_get_name(MPI_Datatype, char *, int *); int PMPI_Type_set_attr(MPI_Datatype, int, void *); int PMPI_Type_set_name(MPI_Datatype, char *); int PMPI_Type_match_size( int, int, MPI_Datatype *); int PMPI_Win_call_errhandler(MPI_Win, int); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int PMPI_Win_delete_attr(MPI_Win, int); int PMPI_Win_free_keyval(int *); int PMPI_Win_get_attr(MPI_Win, int, void *, int *); int PMPI_Win_get_name(MPI_Win, char *, int *); int PMPI_Win_set_attr(MPI_Win, int, void *); int PMPI_Win_set_name(MPI_Win, char *); int PMPI_Type_create_f90_integer( int, MPI_Datatype * ); int PMPI_Type_create_f90_real( int, int, MPI_Datatype * ); int PMPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int PMPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int PMPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int PMPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int PMPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int PMPI_File_set_errhandler(MPI_File, MPI_Errhandler); int PMPI_Finalized(int *); int PMPI_Free_mem(void *); int PMPI_Get_address(void *, MPI_Aint *); int PMPI_Info_create(MPI_Info *); int PMPI_Info_delete(MPI_Info, char *); int PMPI_Info_dup(MPI_Info, MPI_Info *); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info, char *, int, char *, int *); int PMPI_Info_get_nkeys(MPI_Info, int *); int PMPI_Info_get_nthkey(MPI_Info, int, char *); int PMPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int PMPI_Info_set(MPI_Info, char *, char *); int PMPI_Pack_external(char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *); int PMPI_Pack_external_size(char *, int, MPI_Datatype, MPI_Aint *); int PMPI_Request_get_status(MPI_Request, int *, MPI_Status *); int PMPI_Status_c2f(MPI_Status *, MPI_Fint *); int PMPI_Status_f2c(MPI_Fint *, MPI_Status *); int PMPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int PMPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int PMPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Unpack_external(char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype); int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int PMPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int PMPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int PMPI_Reduce_local(void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block(void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); # 1184 "/usr/include/mpich2/mpi.h" # 1 "/usr/include/mpich2/mpio.h" 1 # 13 "/usr/include/mpich2/mpio.h" # 1 "/usr/include/mpich2/mpi.h" 1 # 14 "/usr/include/mpich2/mpio.h" 2 extern "C" { # 119 "/usr/include/mpich2/mpio.h" int MPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int MPI_File_close(MPI_File *); int MPI_File_delete(char *, MPI_Info); int MPI_File_set_size(MPI_File, MPI_Offset); int MPI_File_preallocate(MPI_File, MPI_Offset); int MPI_File_get_size(MPI_File, MPI_Offset *); int MPI_File_get_group(MPI_File, MPI_Group *); int MPI_File_get_amode(MPI_File, int *); int MPI_File_set_info(MPI_File, MPI_Info); int MPI_File_get_info(MPI_File, MPI_Info *); int MPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int MPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int MPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_seek(MPI_File, MPI_Offset, int); int MPI_File_get_position(MPI_File, MPI_Offset *); int MPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int MPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int MPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int MPI_File_seek_shared(MPI_File, MPI_Offset, int); int MPI_File_get_position_shared(MPI_File, MPI_Offset *); int MPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype); int MPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype); int MPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype); int MPI_File_read_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype); int MPI_File_write_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype); int MPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype); int MPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int MPI_Register_datarep(char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int MPI_File_set_atomicity(MPI_File, int); int MPI_File_get_atomicity(MPI_File, int *); int MPI_File_sync(MPI_File); # 248 "/usr/include/mpich2/mpio.h" MPI_File MPI_File_f2c(MPI_Fint); MPI_Fint MPI_File_c2f(MPI_File); # 305 "/usr/include/mpich2/mpio.h" int PMPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete(char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *); int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *); int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype); int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype); int PMPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype); int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype); int PMPI_File_write_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype); int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype); int PMPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep(char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 419 "/usr/include/mpich2/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 456 "/usr/include/mpich2/mpio.h" } # 1185 "/usr/include/mpich2/mpi.h" 2 } # 1200 "/usr/include/mpich2/mpi.h" # 1 "/usr/include/mpich2/mpicxx.h" 1 # 54 "/usr/include/mpich2/mpicxx.h" # 1 "/usr/include/stdio.h" 1 3 4 # 28 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/stdio.h" 2 3 4 extern "C" { # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 37 "/usr/include/stdio.h" 2 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 75 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 32 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 83 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 53 "/usr/include/_G_config.h" 3 4 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 33 "/usr/include/libio.h" 2 3 4 # 53 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 54 "/usr/include/libio.h" 2 3 4 # 172 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 182 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 205 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 273 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 321 "/usr/include/libio.h" 3 4 __off64_t _offset; # 330 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 366 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); typedef __io_read_fn cookie_read_function_t; typedef __io_write_fn cookie_write_function_t; typedef __io_seek_fn cookie_seek_function_t; typedef __io_close_fn cookie_close_function_t; typedef struct { __io_read_fn *read; __io_write_fn *write; __io_seek_fn *seek; __io_close_fn *close; } _IO_cookie_io_functions_t; typedef _IO_cookie_io_functions_t cookie_io_functions_t; struct _IO_cookie_file; extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write, void *__cookie, _IO_cookie_io_functions_t __fns); extern "C" { extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 462 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) throw (); Found header files ['elemental.hpp'] in ['/sandbox/balay/petsc.clone/arch-elemental/include', '/usr/include/mpich2'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from PETSc.packages.elemental(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.elemental(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.clique(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.clique(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hypre(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.oski(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.oski(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PaStiX(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.PaStiX(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.spai(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pARMS(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.pARMS(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.scalapack(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.scalapack(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/sandbox/balay/petsc.clone/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureCPURelax from config.atomics(/sandbox/balay/petsc.clone/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-KqLK70/config.atomics Executing: mpicc -c -o /tmp/petsc-KqLK70/config.atomics/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/sandbox/balay/petsc.clone/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: mpicc -c -o /tmp/petsc-KqLK70/config.atomics/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.atomics/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: mpicc -c -o /tmp/petsc-KqLK70/config.atomics/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:742) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:742) All intermediate test results are stored in /tmp/petsc-KqLK70/PETSc.Configure Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:4:15: error: ‘RTLD_DEFAULT’ undeclared here (not in a function) Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:589) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:589) Sees if there are any prefetch functions supported Executing: uname -s stdout: Linux Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" Popping language C ================================================================================ TEST configureUnused from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:659) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:659) Sees if __attribute((unused)) is supported Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:7:5: warning: unused variable ‘j’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "UNUSED" to "__attribute((unused))" Popping language C ================================================================================ TEST configureDeprecated from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:671) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:671) Check if __attribute((deprecated)) is supported Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:3:38: warning: ‘myfunc’ defined but not used [-Wunused-function] Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED(why)" to "__attribute((deprecated))" Popping language C ================================================================================ TEST configureExpect from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:691) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:691) Sees if the __builtin_expect directive is supported Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" Popping language C ================================================================================ TEST configureFunctionName from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:698) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:698) Sees if the compiler supports __func__ or a variant. Falls back on __FUNCT__ which PETSc source defines, but most users do not, thus stack traces through user code are better when the compiler's variant is used. Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language C Defined "FUNCTION_NAME_C" to "__func__" Pushing language Cxx Executing: mpicxx -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x /tmp/petsc-KqLK70/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /tmp/petsc-KqLK70/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Popping language Cxx Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:720) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:720) Determine what to use for uintptr_t Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:6:18: warning: unused variable ‘i’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" Popping language C ================================================================================ TEST configureSolaris from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:747) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:747) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:760) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:760) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:766) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:766) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetComputerName] in library ['kernel32'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['advapi32'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['User32.lib'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['user32'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for type: int32_t Executing: mpicc -c -o /tmp/petsc-KqLK70/config.types/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/config.types/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:6:7: warning: unused variable ‘u’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:8:5: warning: unused variable ‘a’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:3:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:3:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:833) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:833) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Linux ================================================================================ TEST configureDefaultArch from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:849) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:849) ================================================================================ TEST configureScript from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:866) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:866) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:901) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:901) Setup the directories for installation Defined make rule "shared_install" with dependencies "" and code ['-@echo "Now to check if the libraries are working do:"', '-@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:915) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:915) ================================================================================ TEST configureFortranFlush from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:920) TESTING: configureFortranFlush from PETSc.Configure(config/PETSc/Configure.py:920) Checking for functions [flush_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush_(); static void _check_flush_() { flush_(); } int main() { _check_flush_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_flush_': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `flush_' collect2: ld returned 1 exit status Popping language C Checking for functions [flush__] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpichf90', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-KqLK70/config.libraries/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush__(); static void _check_flush__() { flush__(); } int main() { _check_flush__();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-KqLK70/config.libraries/conftest.o: In function `_check_flush__': /tmp/petsc-KqLK70/config.libraries/conftest.c:5: undefined reference to `flush__' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST configureFeatureTestMacros from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:645) TESTING: configureFeatureTestMacros from PETSc.Configure(config/PETSc/Configure.py:645) Checks if certain feature test macros are support Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:4:20: fatal error: sysctl.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureAtoll from PETSc.Configure(/sandbox/balay/petsc.clone/config/PETSc/Configure.py:654) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:654) Checks if atoll exists Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-KqLK70/PETSc.Configure/conftest.c:7:6: warning: unused variable ‘v’ [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-KqLK70/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl Defined "HAVE_ATOLL" to "1" Defined make rule "remote" with dependencies "" and code [] Defined make rule "remoteclean" with dependencies "" and code [] Pushing language C Defined make macro "CC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " Popping language C Pushing language Cxx Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x " Popping language Cxx Defined make macro "CPP_FLAGS" to " " Pushing language C Defined make macro "PCC" to "mpicc" Defined make macro "PCC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0" Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC Executing: mpif90 -V Defined make macro "FC_LINKER" to "mpif90" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " Popping language FC Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Pushing language C Defined make macro "SL_LINKER" to "mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Popping language C Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Executing: mpicc -c -o /tmp/petsc-KqLK70/PETSc.Configure/conftest.o -I/tmp/petsc-KqLK70/config.setCompilers -I/tmp/petsc-KqLK70/config.compilers -I/tmp/petsc-KqLK70/config.headers -I/tmp/petsc-KqLK70/PETSc.utilities.cacheDetails -I/tmp/petsc-KqLK70/PETSc.utilities.missing -I/tmp/petsc-KqLK70/config.functions -I/tmp/petsc-KqLK70/PETSc.utilities.scalarTypes -I/tmp/petsc-KqLK70/PETSc.packages.valgrind -I/tmp/petsc-KqLK70/config.packages.MPI -I/tmp/petsc-KqLK70/PETSc.packages.pthread -I/tmp/petsc-KqLK70/config.atomics -I/tmp/petsc-KqLK70/config.types -I/tmp/petsc-KqLK70/config.libraries -I/tmp/petsc-KqLK70/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /tmp/petsc-KqLK70/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined "HAVE_ELEMENTAL" to "1" Defined make macro "ELEMENTAL_LIB" to "-Wl,-rpath,/sandbox/balay/petsc.clone/arch-elemental/lib -L/sandbox/balay/petsc.clone/arch-elemental/lib -lelemental -lpmrrr" Defined make macro "ELEMENTAL_INCLUDE" to "-I/sandbox/balay/petsc.clone/arch-elemental/include" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-llapack -lblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-lX11" Defined make macro "X_INCLUDE" to "" Defined "HAVE_CMAKE" to "1" Defined make macro "CMAKE_LIB" to "" Defined make macro "CMAKE_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "-lpthread" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_VALGRIND" to "1" Defined make macro "VALGRIND_LIB" to "" Defined make macro "VALGRIND_INCLUDE" to "" Defined "HAVE_C2HTML" to "1" Defined make macro "C2HTML_LIB" to "" Defined make macro "C2HTML_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/usr/include/mpich2" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L/sandbox/balay/petsc.clone/arch-elemental/lib -lpetsc -Wl,-rpath,/sandbox/balay/petsc.clone/arch-elemental/lib -lelemental -lpmrrr -llapack -lblas -lX11 -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl " Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/sandbox/balay/petsc.clone/arch-elemental/lib -L/sandbox/balay/petsc.clone/arch-elemental/lib -lelemental -lpmrrr -llapack -lblas -lX11 -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl " Defined make macro "PETSC_CC_INCLUDES" to "-I/sandbox/balay/petsc.clone/include -I/sandbox/balay/petsc.clone/arch-elemental/include -I/usr/include/mpich2" Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "PETSC_FC_INCLUDES" to "-I/sandbox/balay/petsc.clone/include -I/sandbox/balay/petsc.clone/arch-elemental/include -I/usr/include/mpich2" Defined make macro "DESTDIR" to "/sandbox/balay/petsc.clone/arch-elemental" Defined "LIB_DIR" to ""/sandbox/balay/petsc.clone/arch-elemental/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--download-elemental --with-cxx-dialect=C++11 PETSC_ARCH=arch-elemental --download-cmake --with-etags=0" Pushing language C Popping language C Pushing language FC Popping language FC Pushing language C Popping language C Pushing language FC Popping language FC Executing: ['/sandbox/balay/petsc.clone/arch-elemental/bin/cmake', '--version'] stdout: cmake version 2.8.10.2 Pushing language C Popping language C Pushing language FC Popping language FC Pushing language Cxx Popping language Cxx Contents of initial cache file /sandbox/balay/petsc.clone/arch-elemental/initial_cache_file.cmake : SET (CMAKE_C_COMPILER mpicc CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_C_FLAGS " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " CACHE STRING "Dummy comment" FORCE) SET (PETSC_CUDA_HOST_FLAGS ,-fPIC,-Wall,-Wwrite-strings,-Wno-strict-aliasing,-Wno-unknown-pragmas,-g3,-fno-inline,-O0 CACHE STRING "Dummy comment" FORCE) SET (CMAKE_Fortran_COMPILER mpif90 CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_Fortran_FLAGS " -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_CXX_COMPILER mpicxx CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_CXX_FLAGS " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_AR /usr/bin/ar CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_RANLIB /usr/bin/ranlib CACHE FILEPATH "Dummy comment" FORCE) Removing: /sandbox/balay/petsc.clone/arch-elemental/CMakeCache.txt Removing: /sandbox/balay/petsc.clone/arch-elemental/CMakeFiles/2.8.10.2 Invoking: ['/sandbox/balay/petsc.clone/arch-elemental/bin/cmake', '--trace', '--debug-output', '-C/sandbox/balay/petsc.clone/arch-elemental/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-elemental', '/sandbox/balay/petsc.clone'] Executing: ['/sandbox/balay/petsc.clone/arch-elemental/bin/cmake', '--trace', '--debug-output', '-C/sandbox/balay/petsc.clone/arch-elemental/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-elemental', '/sandbox/balay/petsc.clone'] stdout: Running with trace output on. Running with debug output on. -- The C compiler identification is GNU 4.6.3 Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeDetermineCCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Check for working C compiler: /usr/bin/mpicc Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Check for working C compiler: /usr/bin/mpicc -- works Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Detecting C compiler ABI info Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Detecting C compiler ABI info - done Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- The Fortran compiler identification is GNU Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeDetermineFortranCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Check for working Fortran compiler: /usr/bin/mpif90 Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Check for working Fortran compiler: /usr/bin/mpif90 -- works Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Detecting Fortran compiler ABI info Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Detecting Fortran compiler ABI info - done Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Checking whether /usr/bin/mpif90 supports Fortran 90 Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Checking whether /usr/bin/mpif90 supports Fortran 90 -- yes Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- The CXX compiler identification is GNU 4.6.3 Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeDetermineCXXCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Check for working CXX compiler: /usr/bin/mpicxx Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Check for working CXX compiler: /usr/bin/mpicxx -- works Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Detecting CXX compiler ABI info Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Detecting CXX compiler ABI info - done Called from: [2] /sandbox/balay/petsc.clone/arch-elemental/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /sandbox/balay/petsc.clone/CMakeLists.txt -- Configuring done -- Generating /sandbox/balay/petsc.clone/arch-elemental -- Generating done -- Build files have been written to: /sandbox/balay/petsc.clone/arch-elemental CMake configured successfully, using as default build Defined make macro "PETSC_BUILD_USING_CMAKE" to "1" Pushing language C Popping language C Pushing language FC Popping language FC ================================================================================ ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.petsc4py(/sandbox/balay/petsc.clone/config/PETSc/packages/petsc4py.py:65) TESTING: alternateConfigureLibrary from PETSc.packages.petsc4py(config/PETSc/packages/petsc4py.py:65) Defined make rule "petsc4py" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpi4py(/sandbox/balay/petsc.clone/config/PETSc/packages/mpi4py.py:49) TESTING: alternateConfigureLibrary from PETSc.packages.mpi4py(config/PETSc/packages/mpi4py.py:49) Defined make rule "mpi4py" with dependencies "" and code [] Defined make rule "mpi4py_noinstall" with dependencies "" and code [] **** arch-elemental/conf/petscvariables **** MPICXX_SHOW = c++ -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpichcxx -lmpich -lopa -lmpl -lrt -lcr -lpthread C_DEPFLAGS = -MMD -MP MPICC_SHOW = gcc -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -L/usr/lib -lmpich -lopa -lmpl -lrt -lcr -lpthread AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP FC_DEPFLAGS = -MMD -MP MPIFC_SHOW = gfortran -Wl,-Bsymbolic-functions -Wl,-z,relro -I/usr/include/mpich2 -I/usr/include/mpich2 -L/usr/lib -lmpichf90 -lmpichf90 -lmpich -lopa -lmpl -lrt -lcr -lpthread FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -J PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = mpicc PETSC_BUILD_USING_CMAKE = 1 CC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 SOWING_LIB = PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc FC_FLAGS = -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g BLASLAPACK_LIB = -llapack -lblas PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} SHLIBS = libpetsc VALGRIND_INCLUDE = MPI_LIB = C2HTML_LIB = PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} CC_SUFFIX = o PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} C2HTML_INCLUDE = CMAKE_LIB = CONFIGURE_OPTIONS = --download-elemental --with-cxx-dialect=C++11 PETSC_ARCH=arch-elemental --download-cmake --with-etags=0 PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CMAKE_INCLUDE = PTHREAD_LIB = -lpthread PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/sandbox/balay/petsc.clone/include -I/sandbox/balay/petsc.clone/arch-elemental/include -I/usr/include/mpich2 CPP_FLAGS = PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = FC_LINKER = mpif90 PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/sandbox/balay/petsc.clone/arch-elemental/lib -L/sandbox/balay/petsc.clone/arch-elemental/lib -lelemental -lpmrrr -llapack -lblas -lX11 -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x PCC_LINKER_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES = -I/sandbox/balay/petsc.clone/include -I/sandbox/balay/petsc.clone/arch-elemental/include -I/usr/include/mpich2 PCC_LINKER = mpicc PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 VALGRIND_LIB = PTHREAD_INCLUDE = ELEMENTAL_INCLUDE = -I/sandbox/balay/petsc.clone/arch-elemental/include BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = so PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} DESTDIR = /sandbox/balay/petsc.clone/arch-elemental FC_MODULE_FLAG = -I X_LIB = -lX11 ELEMENTAL_LIB = -Wl,-rpath,/sandbox/balay/petsc.clone/arch-elemental/lib -L/sandbox/balay/petsc.clone/arch-elemental/lib -lelemental -lpmrrr X_INCLUDE = PETSC_WITH_EXTERNAL_LIB = -L/sandbox/balay/petsc.clone/arch-elemental/lib -lpetsc -Wl,-rpath,/sandbox/balay/petsc.clone/arch-elemental/lib -lelemental -lpmrrr -llapack -lblas -lX11 -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpichf90 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lcr -lpthread -lgcc_s -ldl SOWING_INCLUDE = MPI_INCLUDE = -I/usr/include/mpich2 FC_SUFFIX = o PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SLFLAG = -Wl,-rpath, CC = mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = mpicc CXX = mpicxx FC = mpif90 CXXCPP = mpicxx -E FC_LINKER_SLFLAG = -Wl,-rpath, CPP = mpicc -E AR_LIB_SUFFIX = a LD_SHARED = mpicc AR = /usr/bin/ar DIR = /sandbox/balay/petsc.clone SVN = svn GIT = git HG = hg CVS = cvs SHELL = /bin/sh GREP = /bin/grep MV = /bin/mv PYTHON = /usr/bin/python MKDIR = /bin/mkdir -p SEDINPLACE = /bin/sed -i SED = /bin/sed DIFF = /usr/bin/diff -w GZIP = /bin/gzip RM = /bin/rm -f CP = /bin/cp MAKE_IS_GNUMAKE = 1 MAKE = /usr/bin/make MAKE_NP = 7 OMAKE_NOPRINTDIR = /usr/bin/make --no-print-directory OMAKE = /usr/bin/make --print-directory MPIEXEC = mpiexec TEST_RUNS = C C_X Fortran CMAKE X F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex DATAFILESPATH DATAFILESPATH = /home/petsc/datafiles BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true CMAKE = /sandbox/balay/petsc.clone/arch-elemental/bin/cmake LEX = lex FLEX = flex C2HTML = /sandbox/balay/petsc.clone/arch-elemental/bin/c2html BIB2HTML = /sandbox/balay/petsc.clone/arch-elemental/bin/bib2html PDFLATEX = /usr/bin/pdflatex MAPNAMES = /sandbox/balay/petsc.clone/arch-elemental/bin/mapnames BFORT = /sandbox/balay/petsc.clone/arch-elemental/bin/bfort DOCTEXT = /sandbox/balay/petsc.clone/arch-elemental/bin/doctext **** arch-elemental/conf/petscrules **** shared_install: -@echo "Now to check if the libraries are working do:" -@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test" -@echo "=========================================" remoteclean: remote: libc: ${LIBNAME}(${OBJSC}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} .F.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.o .f90.o .f95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $< .f.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o .F95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $< shared_arch: shared_linux mpi4py_noinstall: mpi4py: petsc4py: **** arch-elemental/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_UINTPTR_T #define PETSC_UINTPTR_T uintptr_t #endif #ifndef PETSC_HAVE_PTHREAD #define PETSC_HAVE_PTHREAD 1 #endif #ifndef PETSC_DEPRECATED #define PETSC_DEPRECATED(why) __attribute((deprecated)) #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_SO_REUSEADDR #define PETSC_HAVE_SO_REUSEADDR 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_PREFETCH_HINT_T2 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #endif #ifndef PETSC_PREFETCH_HINT_T0 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #endif #ifndef PETSC_PREFETCH_HINT_T1 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_HAVE_X #define PETSC_HAVE_X 1 #endif #ifndef PETSC_LIB_DIR #define PETSC_LIB_DIR "/sandbox/balay/petsc.clone/arch-elemental/lib" #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_HAVE_SOWING #define PETSC_HAVE_SOWING 1 #endif #ifndef PETSC_SLSUFFIX #define PETSC_SLSUFFIX "so" #endif #ifndef PETSC_FUNCTION_NAME_CXX #define PETSC_FUNCTION_NAME_CXX __func__ #endif #ifndef PETSC_HAVE_ELEMENTAL #define PETSC_HAVE_ELEMENTAL 1 #endif #ifndef PETSC_HAVE_ATOLL #define PETSC_HAVE_ATOLL 1 #endif #ifndef PETSC_HAVE_CMAKE #define PETSC_HAVE_CMAKE 1 #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_UNUSED #define PETSC_UNUSED __attribute((unused)) #endif #ifndef PETSC_FUNCTION_NAME_C #define PETSC_FUNCTION_NAME_C __func__ #endif #ifndef PETSC_HAVE_C2HTML #define PETSC_HAVE_C2HTML 1 #endif #ifndef PETSC_HAVE_VALGRIND #define PETSC_HAVE_VALGRIND 1 #endif #ifndef PETSC_USE_SINGLE_LIBRARY #define PETSC_USE_SINGLE_LIBRARY 1 #endif #ifndef PETSC_HAVE_BUILTIN_EXPECT #define PETSC_HAVE_BUILTIN_EXPECT 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_HAVE_XMMINTRIN_H #define PETSC_HAVE_XMMINTRIN_H 1 #endif #ifndef PETSC_PREFETCH_HINT_NTA #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #endif #ifndef PETSC_Prefetch #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_MEMORY_H #define PETSC_HAVE_MEMORY_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBBLAS #define PETSC_HAVE_LIBBLAS 1 #endif #ifndef PETSC_HAVE_LIBZ #define PETSC_HAVE_LIBZ 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBPTHREAD #define PETSC_HAVE_LIBPTHREAD 1 #endif #ifndef PETSC_HAVE_LIBLAPACK #define PETSC_HAVE_LIBLAPACK 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LIBMPICHF90 #define PETSC_HAVE_LIBMPICHF90 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBX11 #define PETSC_HAVE_LIBX11 1 #endif #ifndef PETSC_HAVE_LIBQUADMATH #define PETSC_HAVE_LIBQUADMATH 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_HAVE_LIBGFORTRAN #define PETSC_HAVE_LIBGFORTRAN 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-elemental" #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2013-10-09 12:53:47 -0500" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "eac4354e69c9fa8375b34702260aea8b9f91650b" #endif #ifndef PETSC_DIR #define PETSC_DIR "/sandbox/balay/petsc.clone" #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_BLASLAPACK_UNDERSCORE #define PETSC_BLASLAPACK_UNDERSCORE 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_HAVE_SCHED_CPU_SET_T #define PETSC_HAVE_SCHED_CPU_SET_T 1 #endif #ifndef PETSC_HAVE_PTHREAD_BARRIER_T #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** arch-elemental/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- Framework: Directory creation : Created the external packages directory: /sandbox/balay/petsc.clone/externalpackages File creation : Created makefile configure header arch-elemental/conf/petscvariables File creation : Created makefile configure header arch-elemental/conf/petscvariables File creation : Created configure header arch-elemental/include/petscconf.h File creation : Created C specific configure header arch-elemental/include/petscfix.h SOWING: Download : Downloaded sowing into /sandbox/balay/petsc.clone/externalpackages/sowing-1.1.16e Sowing: Install : Installed Sowing into /sandbox/balay/petsc.clone/arch-elemental PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-elemental in conf/petscvariables File creation : Created arch-elemental/conf/reconfigure-arch-elemental.py for automatic reconfiguration C2HTML: Download : Downloaded c2html into /sandbox/balay/petsc.clone/externalpackages/c2html-0.9.4 Install : Installed c2html into /sandbox/balay/petsc.clone/arch-elemental CMAKE: Download : Downloaded cmake into /sandbox/balay/petsc.clone/externalpackages/cmake-2.8.10.2 Install : Installed cmake into /sandbox/balay/petsc.clone/arch-elemental ELEMENTAL: Download : Downloaded elemental into /sandbox/balay/petsc.clone/externalpackages/elemental-0.81 Install : Installed elemental into /sandbox/balay/petsc.clone/arch-elemental Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Compilers: C Compiler: mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 C++ Compiler: mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -std=c++0x Fortran Compiler: mpif90 -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g Linkers: Shared linker: mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 Dynamic linker: mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 make: MPI: Includes: -I/usr/include/mpich2 BLAS/LAPACK: -llapack -lblas X: Library: -lX11 cmake: pthread: Library: -lpthread valgrind: Arch: c2html: sowing: elemental: Includes: -I/sandbox/balay/petsc.clone/arch-elemental/include Library: -Wl,-rpath,/sandbox/balay/petsc.clone/arch-elemental/lib -L/sandbox/balay/petsc.clone/arch-elemental/lib -lelemental -lpmrrr PETSc: PETSC_ARCH: arch-elemental PETSC_DIR: /sandbox/balay/petsc.clone Clanguage: C Scalar type: real Precision: double Memory alignment: 16 shared libraries: enabled xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with (gnumake build): make PETSC_DIR=/sandbox/balay/petsc.clone PETSC_ARCH=arch-elemental all or (experimental with python): PETSC_DIR=/sandbox/balay/petsc.clone PETSC_ARCH=arch-elemental ./config/builder.py xxx=========================================================================xxx